Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119890 | AES80711.1 | 68.504 | 127 | 25 | 1 | 1 | 112 | 2 | 128 | 6.42e-45 | 167 |
| Msa1119890 | AES80711.1 | 78.736 | 174 | 36 | 1 | 99 | 272 | 260 | 432 | 4.47e-89 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119890 | G7KX87 | 68.504 | 127 | 25 | 1 | 1 | 112 | 2 | 128 | 3.07e-45 | 167 |
| Msa1119890 | G7KX87 | 78.736 | 174 | 36 | 1 | 99 | 272 | 260 | 432 | 2.13e-89 | 281 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1119890 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119890 | MtrunA17_Chr7g0252101 | 78.736 | 174 | 36 | 1 | 99 | 272 | 260 | 432 | 4.11e-93 | 281 |
| Msa1119890 | MtrunA17_Chr7g0252101 | 68.504 | 127 | 25 | 1 | 1 | 112 | 2 | 128 | 5.90e-49 | 167 |
| Msa1119890 | MtrunA17_Chr1g0207351 | 70.857 | 175 | 50 | 1 | 98 | 272 | 193 | 366 | 1.28e-80 | 247 |
| Msa1119890 | MtrunA17_Chr3g0093911 | 69.143 | 175 | 53 | 1 | 98 | 272 | 177 | 350 | 2.41e-78 | 241 |
| Msa1119890 | MtrunA17_Chr1g0209051 | 67.052 | 173 | 56 | 1 | 99 | 271 | 99 | 270 | 3.65e-75 | 230 |
| Msa1119890 | MtrunA17_Chr1g0202841 | 64.943 | 174 | 58 | 2 | 101 | 272 | 7 | 179 | 1.91e-71 | 217 |
| Msa1119890 | MtrunA17_Chr4g0075971 | 58.286 | 175 | 64 | 4 | 101 | 272 | 434 | 602 | 1.91e-53 | 182 |
| Msa1119890 | MtrunA17_Chr7g0243331 | 55.114 | 176 | 69 | 4 | 101 | 272 | 181 | 350 | 7.62e-53 | 175 |
| Msa1119890 | MtrunA17_Chr1g0187941 | 63.433 | 134 | 48 | 1 | 99 | 232 | 5 | 137 | 8.94e-51 | 163 |
| Msa1119890 | MtrunA17_Chr3g0077801 | 56.250 | 176 | 68 | 4 | 98 | 269 | 179 | 349 | 1.26e-50 | 169 |
| Msa1119890 | MtrunA17_Chr3g0112311 | 53.591 | 181 | 71 | 4 | 100 | 270 | 178 | 355 | 5.18e-50 | 168 |
| Msa1119890 | MtrunA17_Chr3g0123471 | 54.438 | 169 | 70 | 3 | 98 | 263 | 94 | 258 | 8.70e-49 | 162 |
| Msa1119890 | MtrunA17_Chr6g0488101 | 53.804 | 184 | 71 | 6 | 100 | 272 | 275 | 455 | 1.61e-48 | 166 |
| Msa1119890 | MtrunA17_Chr6g0488271 | 53.261 | 184 | 72 | 6 | 100 | 272 | 235 | 415 | 4.82e-48 | 164 |
| Msa1119890 | MtrunA17_Chr6g0452641 | 51.087 | 184 | 76 | 4 | 100 | 272 | 160 | 340 | 1.04e-47 | 162 |
| Msa1119890 | MtrunA17_Chr3g0077851 | 53.977 | 176 | 72 | 4 | 100 | 271 | 165 | 335 | 4.56e-47 | 160 |
| Msa1119890 | MtrunA17_Chr3g0077901 | 51.705 | 176 | 76 | 4 | 100 | 271 | 201 | 371 | 3.68e-44 | 153 |
| Msa1119890 | MtrunA17_Chr6g0486591 | 49.383 | 162 | 68 | 5 | 122 | 272 | 1 | 159 | 1.66e-38 | 132 |
| Msa1119890 | MtrunA17_Chr3g0122991 | 51.908 | 131 | 49 | 3 | 118 | 238 | 148 | 274 | 2.98e-35 | 127 |
| Msa1119890 | MtrunA17_Chr1g0196241 | 69.880 | 83 | 21 | 2 | 169 | 250 | 3 | 82 | 2.29e-33 | 117 |
| Msa1119890 | MtrunA17_Chr1g0209191 | 59.406 | 101 | 31 | 2 | 178 | 271 | 1 | 98 | 5.06e-33 | 116 |
| Msa1119890 | MtrunA17_Chr5g0431721 | 72.308 | 65 | 18 | 0 | 1 | 65 | 1 | 65 | 7.64e-26 | 98.6 |
| Msa1119890 | MtrunA17_Chr6g0459061 | 32.704 | 159 | 98 | 4 | 101 | 257 | 187 | 338 | 3.47e-16 | 77.4 |
| Msa1119890 | MtrunA17_Chr1g0209061 | 41.441 | 111 | 40 | 5 | 1 | 99 | 2 | 99 | 1.02e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTAATATGGAGTACAATA+TGG | 0.249161 | 7_3:+69025004 | Msa1119890:CDS |
| ACAACATGCAGTGTGTATTC+AGG | 0.284588 | 7_3:+69025198 | Msa1119890:CDS |
| CAAGTTTCCTCAAGTTTGAT+TGG | 0.335961 | 7_3:+69025271 | Msa1119890:CDS |
| TGCACTTGAGTTTCTTCTTA+AGG | 0.341291 | 7_3:+69023834 | Msa1119890:CDS |
| CAAGCTAAGTACTCCTATAT+TGG | 0.350080 | 7_3:-69024875 | None:intergenic |
| CACTTTCCAGCTGGTCCCTT+AGG | 0.350389 | 7_3:+69024947 | Msa1119890:CDS |
| AAAACTCATAAAAGATTTCA+AGG | 0.352278 | 7_3:+69023909 | Msa1119890:CDS |
| CTCTCATATCCCCACATGTC+CGG | 0.359142 | 7_3:-69025144 | None:intergenic |
| GATGACCACTTTCAGTTTGC+CGG | 0.363031 | 7_3:+69024353 | Msa1119890:CDS |
| TATGTCAAAATGAAAACTTT+AGG | 0.369262 | 7_3:+69025060 | Msa1119890:CDS |
| AGGGAGGGTTGTTGACTTTG+TGG | 0.410514 | 7_3:+69024816 | Msa1119890:intron |
| GTCATCGATATCTAGTGTTT+CGG | 0.443080 | 7_3:-69024336 | None:intergenic |
| TTTAATATGGAGTACAATAT+GGG | 0.449695 | 7_3:+69025005 | Msa1119890:CDS |
| GTCACTCATAAGGCCAATAT+AGG | 0.450218 | 7_3:+69024862 | Msa1119890:CDS |
| AATATATGTTGTCACTCATA+AGG | 0.454953 | 7_3:+69024852 | Msa1119890:CDS |
| TTCCAGCTGGTCCCTTAGGT+TGG | 0.469332 | 7_3:+69024951 | Msa1119890:CDS |
| CAGCTGGAAAGTGGTACATT+GGG | 0.473856 | 7_3:-69024937 | None:intergenic |
| GCAGCTCCCTCACTCTTCCT+TGG | 0.477319 | 7_3:-69023957 | None:intergenic |
| GGGAAAACGGTGAAGAAGGT+AGG | 0.482082 | 7_3:+69024272 | Msa1119890:intron |
| AGAGAATTGTCAACTTCCTA+TGG | 0.486101 | 7_3:+69024295 | Msa1119890:CDS |
| GCTGAAAGAATTGATATAAG+AGG | 0.511724 | 7_3:+69023931 | Msa1119890:CDS |
| GTGATACAAAGTAGGGAAAA+CGG | 0.519610 | 7_3:+69024259 | Msa1119890:intron |
| AAACTTGTTCCATGAGGAGC+TGG | 0.519686 | 7_3:-69025255 | None:intergenic |
| TCTCATATCCCCACATGTCC+GGG | 0.523100 | 7_3:-69025143 | None:intergenic |
| AGAGTGAGGGAGCTGCTTCA+AGG | 0.529263 | 7_3:+69023964 | Msa1119890:CDS |
| CCAGCTGGAAAGTGGTACAT+TGG | 0.529412 | 7_3:-69024938 | None:intergenic |
| CATCATGGCCATTGTTTCGA+GGG | 0.532022 | 7_3:-69023810 | None:intergenic |
| GAGCTGCTTCAAGGACATCC+AGG | 0.532286 | 7_3:+69023973 | Msa1119890:CDS |
| TCATCATGGCCATTGTTTCG+AGG | 0.533555 | 7_3:-69023811 | None:intergenic |
| AACCAACCTAAGGGACCAGC+TGG | 0.533936 | 7_3:-69024953 | None:intergenic |
| CATCACAGCTAACCAACCTA+AGG | 0.538273 | 7_3:-69024963 | None:intergenic |
| AGTAGGGAAAACGGTGAAGA+AGG | 0.541106 | 7_3:+69024268 | Msa1119890:intron |
| CTAAGGGACCAGCTGGAAAG+TGG | 0.544886 | 7_3:-69024946 | None:intergenic |
| ACACACCGGCAAACTGAAAG+TGG | 0.564920 | 7_3:-69024358 | None:intergenic |
| ATGATATCAAGCACATCCAT+AGG | 0.565205 | 7_3:-69024311 | None:intergenic |
| CATTGAGCAACCCGGACATG+TGG | 0.567823 | 7_3:+69025133 | Msa1119890:CDS |
| ATTACGCTTCCAGCTCCTCA+TGG | 0.574519 | 7_3:+69025246 | Msa1119890:CDS |
| GAAACTCAAGTGCATCATCA+TGG | 0.574862 | 7_3:-69023825 | None:intergenic |
| ATGAACATCCCTCGAAACAA+TGG | 0.578173 | 7_3:+69023802 | Msa1119890:CDS |
| CCAATGTACCACTTTCCAGC+TGG | 0.586019 | 7_3:+69024938 | Msa1119890:CDS |
| TAAAACACCAATCAAACTTG+AGG | 0.597972 | 7_3:-69025278 | None:intergenic |
| TTGTTATGCATTGAGCAACC+CGG | 0.598873 | 7_3:+69025125 | Msa1119890:CDS |
| ATTGATATAAGAGGTGTCCA+AGG | 0.601739 | 7_3:+69023940 | Msa1119890:CDS |
| AGGTGTCCAAGGAAGAGTGA+GGG | 0.605251 | 7_3:+69023951 | Msa1119890:CDS |
| ATTGAGCAACCCGGACATGT+GGG | 0.605413 | 7_3:+69025134 | Msa1119890:CDS |
| TTGAGCAACCCGGACATGTG+GGG | 0.641021 | 7_3:+69025135 | Msa1119890:CDS |
| ATCACAGCTAACCAACCTAA+GGG | 0.644653 | 7_3:-69024962 | None:intergenic |
| GAGGTGTCCAAGGAAGAGTG+AGG | 0.685556 | 7_3:+69023950 | Msa1119890:CDS |
| TTGAGGAAACTTGTTCCATG+AGG | 0.687755 | 7_3:-69025261 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAAATAGAAAAACAT+AGG | + | chr7_3:69024207-69024226 | Msa1119890:intron | 15.0% |
| !! | AAAACTAAATAGAAAAACAT+AGG | + | chr7_3:69024207-69024226 | Msa1119890:intron | 15.0% |
| !! | AAAACTCATAAAAGATTTCA+AGG | + | chr7_3:69023909-69023928 | Msa1119890:CDS | 20.0% |
| !! | TTAGAATAAGTGAATTATTG+TGG | - | chr7_3:69024597-69024616 | None:intergenic | 20.0% |
| !!! | TTTTAGTGGTTGATTTAATA+TGG | + | chr7_3:69024992-69025011 | Msa1119890:CDS | 20.0% |
| !! | ATTTAATATGGAGTACAATA+TGG | + | chr7_3:69025004-69025023 | Msa1119890:CDS | 20.0% |
| !! | TTTAATATGGAGTACAATAT+GGG | + | chr7_3:69025005-69025024 | Msa1119890:CDS | 20.0% |
| !!! | TTTCATTTTGACATAATTCA+TGG | - | chr7_3:69025055-69025074 | None:intergenic | 20.0% |
| !! | TATGTCAAAATGAAAACTTT+AGG | + | chr7_3:69025060-69025079 | Msa1119890:CDS | 20.0% |
| !! | AAAACTCATAAAAGATTTCA+AGG | + | chr7_3:69023909-69023928 | Msa1119890:CDS | 20.0% |
| !! | TTAGAATAAGTGAATTATTG+TGG | - | chr7_3:69024597-69024616 | None:intergenic | 20.0% |
| !!! | TTTTAGTGGTTGATTTAATA+TGG | + | chr7_3:69024992-69025011 | Msa1119890:CDS | 20.0% |
| !! | ATTTAATATGGAGTACAATA+TGG | + | chr7_3:69025004-69025023 | Msa1119890:CDS | 20.0% |
| !! | TTTAATATGGAGTACAATAT+GGG | + | chr7_3:69025005-69025024 | Msa1119890:CDS | 20.0% |
| !!! | TTTCATTTTGACATAATTCA+TGG | - | chr7_3:69025055-69025074 | None:intergenic | 20.0% |
| !! | TATGTCAAAATGAAAACTTT+AGG | + | chr7_3:69025060-69025079 | Msa1119890:CDS | 20.0% |
| ! | TTGAATCTGAATATTAAACC+TGG | - | chr7_3:69023994-69024013 | None:intergenic | 25.0% |
| ! | AACAGATAAAGCAAAAGTAA+AGG | - | chr7_3:69024104-69024123 | None:intergenic | 25.0% |
| ! | TAGATCGTAGAATTATTGAA+GGG | - | chr7_3:69024136-69024155 | None:intergenic | 25.0% |
| ! | ATAGATCGTAGAATTATTGA+AGG | - | chr7_3:69024137-69024156 | None:intergenic | 25.0% |
| ! | ATCACAACAATAACAGTATT+AGG | - | chr7_3:69024244-69024263 | None:intergenic | 25.0% |
| ! | TTATTGTTGTGATACAAAGT+AGG | + | chr7_3:69024251-69024270 | Msa1119890:intron | 25.0% |
| ! | TATTGTTGTGATACAAAGTA+GGG | + | chr7_3:69024252-69024271 | Msa1119890:intron | 25.0% |
| !! | AGGTCTTTTCATAAATTTAC+TGG | + | chr7_3:69024392-69024411 | Msa1119890:intron | 25.0% |
| ! | AATTTACTGGAGAAATTTCT+TGG | + | chr7_3:69024405-69024424 | Msa1119890:intron | 25.0% |
| ! | ATAAAGGAATATGATACACT+AGG | - | chr7_3:69024469-69024488 | None:intergenic | 25.0% |
| !!! | CCTTCTTTTTTCTTGTAAAT+GGG | - | chr7_3:69024624-69024643 | None:intergenic | 25.0% |
| !!! | ACCTTCTTTTTTCTTGTAAA+TGG | - | chr7_3:69024625-69024644 | None:intergenic | 25.0% |
| ! | AATATATGTTGTCACTCATA+AGG | + | chr7_3:69024852-69024871 | Msa1119890:CDS | 25.0% |
| !! | CTCAATGCATAACAATTTTT+CGG | - | chr7_3:69025120-69025139 | None:intergenic | 25.0% |
| ! | TTGAATCTGAATATTAAACC+TGG | - | chr7_3:69023994-69024013 | None:intergenic | 25.0% |
| ! | AACAGATAAAGCAAAAGTAA+AGG | - | chr7_3:69024104-69024123 | None:intergenic | 25.0% |
| ! | TAGATCGTAGAATTATTGAA+GGG | - | chr7_3:69024136-69024155 | None:intergenic | 25.0% |
| ! | ATAGATCGTAGAATTATTGA+AGG | - | chr7_3:69024137-69024156 | None:intergenic | 25.0% |
| ! | ATCACAACAATAACAGTATT+AGG | - | chr7_3:69024244-69024263 | None:intergenic | 25.0% |
| ! | TTATTGTTGTGATACAAAGT+AGG | + | chr7_3:69024251-69024270 | Msa1119890:intron | 25.0% |
| ! | TATTGTTGTGATACAAAGTA+GGG | + | chr7_3:69024252-69024271 | Msa1119890:intron | 25.0% |
| !! | AGGTCTTTTCATAAATTTAC+TGG | + | chr7_3:69024392-69024411 | Msa1119890:intron | 25.0% |
| ! | AATTTACTGGAGAAATTTCT+TGG | + | chr7_3:69024405-69024424 | Msa1119890:intron | 25.0% |
| ! | ATAAAGGAATATGATACACT+AGG | - | chr7_3:69024469-69024488 | None:intergenic | 25.0% |
| !!! | CCTTCTTTTTTCTTGTAAAT+GGG | - | chr7_3:69024624-69024643 | None:intergenic | 25.0% |
| !!! | ACCTTCTTTTTTCTTGTAAA+TGG | - | chr7_3:69024625-69024644 | None:intergenic | 25.0% |
| ! | AATATATGTTGTCACTCATA+AGG | + | chr7_3:69024852-69024871 | Msa1119890:CDS | 25.0% |
| !! | CTCAATGCATAACAATTTTT+CGG | - | chr7_3:69025120-69025139 | None:intergenic | 25.0% |
| GCTGAAAGAATTGATATAAG+AGG | + | chr7_3:69023931-69023950 | Msa1119890:CDS | 30.0% | |
| TTGAAGAAGTAATGGTTCTT+GGG | - | chr7_3:69024434-69024453 | None:intergenic | 30.0% | |
| TACACTTCTTGAAGAAGTAA+TGG | - | chr7_3:69024442-69024461 | None:intergenic | 30.0% | |
| TATTCCTTTATTAGCATACC+CGG | + | chr7_3:69024478-69024497 | Msa1119890:intron | 30.0% | |
| ! | TCTTCGAGCAATAAACTTTT+TGG | - | chr7_3:69024504-69024523 | None:intergenic | 30.0% |
| CCCATTTACAAGAAAAAAGA+AGG | + | chr7_3:69024621-69024640 | Msa1119890:intron | 30.0% | |
| TAAAACACCAATCAAACTTG+AGG | - | chr7_3:69025281-69025300 | None:intergenic | 30.0% | |
| GCTGAAAGAATTGATATAAG+AGG | + | chr7_3:69023931-69023950 | Msa1119890:CDS | 30.0% | |
| TTGAAGAAGTAATGGTTCTT+GGG | - | chr7_3:69024434-69024453 | None:intergenic | 30.0% | |
| TACACTTCTTGAAGAAGTAA+TGG | - | chr7_3:69024442-69024461 | None:intergenic | 30.0% | |
| TATTCCTTTATTAGCATACC+CGG | + | chr7_3:69024478-69024497 | Msa1119890:intron | 30.0% | |
| ! | TCTTCGAGCAATAAACTTTT+TGG | - | chr7_3:69024504-69024523 | None:intergenic | 30.0% |
| CCCATTTACAAGAAAAAAGA+AGG | + | chr7_3:69024621-69024640 | Msa1119890:intron | 30.0% | |
| TAAAACACCAATCAAACTTG+AGG | - | chr7_3:69025281-69025300 | None:intergenic | 30.0% | |
| TGCACTTGAGTTTCTTCTTA+AGG | + | chr7_3:69023834-69023853 | Msa1119890:CDS | 35.0% | |
| !! | ATTGATATAAGAGGTGTCCA+AGG | + | chr7_3:69023940-69023959 | Msa1119890:CDS | 35.0% |
| TGAAGTGCAATGGAAAAAGT+AGG | - | chr7_3:69024047-69024066 | None:intergenic | 35.0% | |
| TCAAGATATGTGAAGTGCAA+TGG | - | chr7_3:69024057-69024076 | None:intergenic | 35.0% | |
| GTGATACAAAGTAGGGAAAA+CGG | + | chr7_3:69024259-69024278 | Msa1119890:intron | 35.0% | |
| AGAGAATTGTCAACTTCCTA+TGG | + | chr7_3:69024295-69024314 | Msa1119890:CDS | 35.0% | |
| ATGATATCAAGCACATCCAT+AGG | - | chr7_3:69024314-69024333 | None:intergenic | 35.0% | |
| GTCATCGATATCTAGTGTTT+CGG | - | chr7_3:69024339-69024358 | None:intergenic | 35.0% | |
| CTTGAAGAAGTAATGGTTCT+TGG | - | chr7_3:69024435-69024454 | None:intergenic | 35.0% | |
| AGTTTATTGCTCGAAGATGA+TGG | + | chr7_3:69024507-69024526 | Msa1119890:intron | 35.0% | |
| !! | TCTAAGTTTGTTACTTCCAG+AGG | - | chr7_3:69024662-69024681 | None:intergenic | 35.0% |
| ATGCTCTAACGAATTTGTCT+TGG | + | chr7_3:69024711-69024730 | Msa1119890:intron | 35.0% | |
| GTCTATCAATCTCGATATTC+TGG | + | chr7_3:69024763-69024782 | Msa1119890:intron | 35.0% | |
| ATCAATCTCGATATTCTGGT+TGG | + | chr7_3:69024767-69024786 | Msa1119890:intron | 35.0% | |
| ! | TCAATCTCGATATTCTGGTT+GGG | + | chr7_3:69024768-69024787 | Msa1119890:intron | 35.0% |
| TTGGGTTACTTATTCGACAA+TGG | + | chr7_3:69024786-69024805 | Msa1119890:intron | 35.0% | |
| TATTCGACAATGGAAAAGTC+AGG | + | chr7_3:69024796-69024815 | Msa1119890:intron | 35.0% | |
| ATTCGACAATGGAAAAGTCA+GGG | + | chr7_3:69024797-69024816 | Msa1119890:intron | 35.0% | |
| CAAGCTAAGTACTCCTATAT+TGG | - | chr7_3:69024878-69024897 | None:intergenic | 35.0% | |
| ! | CTGTGATGAACAACTTTTAG+TGG | + | chr7_3:69024978-69024997 | Msa1119890:CDS | 35.0% |
| CAAGTTTCCTCAAGTTTGAT+TGG | + | chr7_3:69025271-69025290 | Msa1119890:CDS | 35.0% | |
| TGCACTTGAGTTTCTTCTTA+AGG | + | chr7_3:69023834-69023853 | Msa1119890:CDS | 35.0% | |
| !! | ATTGATATAAGAGGTGTCCA+AGG | + | chr7_3:69023940-69023959 | Msa1119890:CDS | 35.0% |
| TGAAGTGCAATGGAAAAAGT+AGG | - | chr7_3:69024047-69024066 | None:intergenic | 35.0% | |
| TCAAGATATGTGAAGTGCAA+TGG | - | chr7_3:69024057-69024076 | None:intergenic | 35.0% | |
| GTGATACAAAGTAGGGAAAA+CGG | + | chr7_3:69024259-69024278 | Msa1119890:intron | 35.0% | |
| AGAGAATTGTCAACTTCCTA+TGG | + | chr7_3:69024295-69024314 | Msa1119890:CDS | 35.0% | |
| ATGATATCAAGCACATCCAT+AGG | - | chr7_3:69024314-69024333 | None:intergenic | 35.0% | |
| GTCATCGATATCTAGTGTTT+CGG | - | chr7_3:69024339-69024358 | None:intergenic | 35.0% | |
| CTTGAAGAAGTAATGGTTCT+TGG | - | chr7_3:69024435-69024454 | None:intergenic | 35.0% | |
| AGTTTATTGCTCGAAGATGA+TGG | + | chr7_3:69024507-69024526 | Msa1119890:intron | 35.0% | |
| !! | TCTAAGTTTGTTACTTCCAG+AGG | - | chr7_3:69024662-69024681 | None:intergenic | 35.0% |
| ATGCTCTAACGAATTTGTCT+TGG | + | chr7_3:69024711-69024730 | Msa1119890:intron | 35.0% | |
| GTCTATCAATCTCGATATTC+TGG | + | chr7_3:69024763-69024782 | Msa1119890:intron | 35.0% | |
| ATCAATCTCGATATTCTGGT+TGG | + | chr7_3:69024767-69024786 | Msa1119890:intron | 35.0% | |
| ! | TCAATCTCGATATTCTGGTT+GGG | + | chr7_3:69024768-69024787 | Msa1119890:intron | 35.0% |
| TTGGGTTACTTATTCGACAA+TGG | + | chr7_3:69024786-69024805 | Msa1119890:intron | 35.0% | |
| TATTCGACAATGGAAAAGTC+AGG | + | chr7_3:69024796-69024815 | Msa1119890:intron | 35.0% | |
| ATTCGACAATGGAAAAGTCA+GGG | + | chr7_3:69024797-69024816 | Msa1119890:intron | 35.0% | |
| CAAGCTAAGTACTCCTATAT+TGG | - | chr7_3:69024878-69024897 | None:intergenic | 35.0% | |
| ! | CTGTGATGAACAACTTTTAG+TGG | + | chr7_3:69024978-69024997 | Msa1119890:CDS | 35.0% |
| CAAGTTTCCTCAAGTTTGAT+TGG | + | chr7_3:69025271-69025290 | Msa1119890:CDS | 35.0% | |
| ATGAACATCCCTCGAAACAA+TGG | + | chr7_3:69023802-69023821 | Msa1119890:CDS | 40.0% | |
| GAAACTCAAGTGCATCATCA+TGG | - | chr7_3:69023828-69023847 | None:intergenic | 40.0% | |
| AAAAGTAGGAACGAACCAGT+TGG | - | chr7_3:69024033-69024052 | None:intergenic | 40.0% | |
| !! | GAGCAATAAACTTTTTGGCC+GGG | - | chr7_3:69024499-69024518 | None:intergenic | 40.0% |
| !! | CGAGCAATAAACTTTTTGGC+CGG | - | chr7_3:69024500-69024519 | None:intergenic | 40.0% |
| ! | GCATATGTCACTTCTTCTAG+CGG | + | chr7_3:69024550-69024569 | Msa1119890:intron | 40.0% |
| TTCTAGCGGTTATTGTGTCA+TGG | + | chr7_3:69024564-69024583 | Msa1119890:intron | 40.0% | |
| ! | GTTTGTTACTTCCAGAGGTA+GGG | - | chr7_3:69024657-69024676 | None:intergenic | 40.0% |
| !! | AGTTTGTTACTTCCAGAGGT+AGG | - | chr7_3:69024658-69024677 | None:intergenic | 40.0% |
| ! | GCATTTGCTAAAAGCAAGCA+AGG | - | chr7_3:69024695-69024714 | None:intergenic | 40.0% |
| CTCTAACGAATTTGTCTTGG+TGG | + | chr7_3:69024714-69024733 | Msa1119890:intron | 40.0% | |
| GTCACTCATAAGGCCAATAT+AGG | + | chr7_3:69024862-69024881 | Msa1119890:CDS | 40.0% | |
| ATCACAGCTAACCAACCTAA+GGG | - | chr7_3:69024965-69024984 | None:intergenic | 40.0% | |
| TTGTTATGCATTGAGCAACC+CGG | + | chr7_3:69025125-69025144 | Msa1119890:CDS | 40.0% | |
| ACAACATGCAGTGTGTATTC+AGG | + | chr7_3:69025198-69025217 | Msa1119890:CDS | 40.0% | |
| ! | TTGAGGAAACTTGTTCCATG+AGG | - | chr7_3:69025264-69025283 | None:intergenic | 40.0% |
| ATGAACATCCCTCGAAACAA+TGG | + | chr7_3:69023802-69023821 | Msa1119890:CDS | 40.0% | |
| GAAACTCAAGTGCATCATCA+TGG | - | chr7_3:69023828-69023847 | None:intergenic | 40.0% | |
| AAAAGTAGGAACGAACCAGT+TGG | - | chr7_3:69024033-69024052 | None:intergenic | 40.0% | |
| !! | GAGCAATAAACTTTTTGGCC+GGG | - | chr7_3:69024499-69024518 | None:intergenic | 40.0% |
| !! | CGAGCAATAAACTTTTTGGC+CGG | - | chr7_3:69024500-69024519 | None:intergenic | 40.0% |
| ! | GCATATGTCACTTCTTCTAG+CGG | + | chr7_3:69024550-69024569 | Msa1119890:intron | 40.0% |
| TTCTAGCGGTTATTGTGTCA+TGG | + | chr7_3:69024564-69024583 | Msa1119890:intron | 40.0% | |
| ! | GTTTGTTACTTCCAGAGGTA+GGG | - | chr7_3:69024657-69024676 | None:intergenic | 40.0% |
| !! | AGTTTGTTACTTCCAGAGGT+AGG | - | chr7_3:69024658-69024677 | None:intergenic | 40.0% |
| ! | GCATTTGCTAAAAGCAAGCA+AGG | - | chr7_3:69024695-69024714 | None:intergenic | 40.0% |
| CTCTAACGAATTTGTCTTGG+TGG | + | chr7_3:69024714-69024733 | Msa1119890:intron | 40.0% | |
| GTCACTCATAAGGCCAATAT+AGG | + | chr7_3:69024862-69024881 | Msa1119890:CDS | 40.0% | |
| ATCACAGCTAACCAACCTAA+GGG | - | chr7_3:69024965-69024984 | None:intergenic | 40.0% | |
| TTGTTATGCATTGAGCAACC+CGG | + | chr7_3:69025125-69025144 | Msa1119890:CDS | 40.0% | |
| ACAACATGCAGTGTGTATTC+AGG | + | chr7_3:69025198-69025217 | Msa1119890:CDS | 40.0% | |
| ! | TTGAGGAAACTTGTTCCATG+AGG | - | chr7_3:69025264-69025283 | None:intergenic | 40.0% |
| CATCATGGCCATTGTTTCGA+GGG | - | chr7_3:69023813-69023832 | None:intergenic | 45.0% | |
| TCATCATGGCCATTGTTTCG+AGG | - | chr7_3:69023814-69023833 | None:intergenic | 45.0% | |
| AGTAGGGAAAACGGTGAAGA+AGG | + | chr7_3:69024268-69024287 | Msa1119890:intron | 45.0% | |
| GATGACCACTTTCAGTTTGC+CGG | + | chr7_3:69024353-69024372 | Msa1119890:CDS | 45.0% | |
| TTGGCCGGGTATGCTAATAA+AGG | - | chr7_3:69024485-69024504 | None:intergenic | 45.0% | |
| GTAGTCAATTTCCCTACCTC+TGG | + | chr7_3:69024643-69024662 | Msa1119890:intron | 45.0% | |
| TGCTAAAAGCAAGCAAGGCA+CGG | - | chr7_3:69024690-69024709 | None:intergenic | 45.0% | |
| GACAATGGAAAAGTCAGGGA+GGG | + | chr7_3:69024801-69024820 | Msa1119890:intron | 45.0% | |
| CAGCTGGAAAGTGGTACATT+GGG | - | chr7_3:69024940-69024959 | None:intergenic | 45.0% | |
| CATCACAGCTAACCAACCTA+AGG | - | chr7_3:69024966-69024985 | None:intergenic | 45.0% | |
| ! | AAACTTGTTCCATGAGGAGC+TGG | - | chr7_3:69025258-69025277 | None:intergenic | 45.0% |
| CATCATGGCCATTGTTTCGA+GGG | - | chr7_3:69023813-69023832 | None:intergenic | 45.0% | |
| TCATCATGGCCATTGTTTCG+AGG | - | chr7_3:69023814-69023833 | None:intergenic | 45.0% | |
| AGTAGGGAAAACGGTGAAGA+AGG | + | chr7_3:69024268-69024287 | Msa1119890:intron | 45.0% | |
| GATGACCACTTTCAGTTTGC+CGG | + | chr7_3:69024353-69024372 | Msa1119890:CDS | 45.0% | |
| TTGGCCGGGTATGCTAATAA+AGG | - | chr7_3:69024485-69024504 | None:intergenic | 45.0% | |
| GTAGTCAATTTCCCTACCTC+TGG | + | chr7_3:69024643-69024662 | Msa1119890:intron | 45.0% | |
| TGCTAAAAGCAAGCAAGGCA+CGG | - | chr7_3:69024690-69024709 | None:intergenic | 45.0% | |
| GACAATGGAAAAGTCAGGGA+GGG | + | chr7_3:69024801-69024820 | Msa1119890:intron | 45.0% | |
| CAGCTGGAAAGTGGTACATT+GGG | - | chr7_3:69024940-69024959 | None:intergenic | 45.0% | |
| CATCACAGCTAACCAACCTA+AGG | - | chr7_3:69024966-69024985 | None:intergenic | 45.0% | |
| ! | AAACTTGTTCCATGAGGAGC+TGG | - | chr7_3:69025258-69025277 | None:intergenic | 45.0% |
| AGGTGTCCAAGGAAGAGTGA+GGG | + | chr7_3:69023951-69023970 | Msa1119890:CDS | 50.0% | |
| ACCTTCCTCATCATGCCAAC+TGG | + | chr7_3:69024015-69024034 | Msa1119890:intron | 50.0% | |
| ACCAGTTGGCATGATGAGGA+AGG | - | chr7_3:69024019-69024038 | None:intergenic | 50.0% | |
| ACGAACCAGTTGGCATGATG+AGG | - | chr7_3:69024023-69024042 | None:intergenic | 50.0% | |
| GGGAAAACGGTGAAGAAGGT+AGG | + | chr7_3:69024272-69024291 | Msa1119890:intron | 50.0% | |
| ACACACCGGCAAACTGAAAG+TGG | - | chr7_3:69024361-69024380 | None:intergenic | 50.0% | |
| TTGCCGGTGTGTGCAAGAAT+TGG | + | chr7_3:69024369-69024388 | Msa1119890:intron | 50.0% | |
| CCTCCAATTCTTGCACACAC+CGG | - | chr7_3:69024375-69024394 | None:intergenic | 50.0% | |
| !! | AGATGATGGAGTCCCTCGTA+CGG | + | chr7_3:69024521-69024540 | Msa1119890:intron | 50.0% |
| CGACAATGGAAAAGTCAGGG+AGG | + | chr7_3:69024800-69024819 | Msa1119890:intron | 50.0% | |
| !! | AGGGAGGGTTGTTGACTTTG+TGG | + | chr7_3:69024816-69024835 | Msa1119890:intron | 50.0% |
| CCAGCTGGAAAGTGGTACAT+TGG | - | chr7_3:69024941-69024960 | None:intergenic | 50.0% | |
| CCAATGTACCACTTTCCAGC+TGG | + | chr7_3:69024938-69024957 | Msa1119890:CDS | 50.0% | |
| ATTGAGCAACCCGGACATGT+GGG | + | chr7_3:69025134-69025153 | Msa1119890:CDS | 50.0% | |
| TCTCATATCCCCACATGTCC+GGG | - | chr7_3:69025146-69025165 | None:intergenic | 50.0% | |
| CTCTCATATCCCCACATGTC+CGG | - | chr7_3:69025147-69025166 | None:intergenic | 50.0% | |
| ATTACGCTTCCAGCTCCTCA+TGG | + | chr7_3:69025246-69025265 | Msa1119890:CDS | 50.0% | |
| AGGTGTCCAAGGAAGAGTGA+GGG | + | chr7_3:69023951-69023970 | Msa1119890:CDS | 50.0% | |
| ACCTTCCTCATCATGCCAAC+TGG | + | chr7_3:69024015-69024034 | Msa1119890:intron | 50.0% | |
| ACCAGTTGGCATGATGAGGA+AGG | - | chr7_3:69024019-69024038 | None:intergenic | 50.0% | |
| ACGAACCAGTTGGCATGATG+AGG | - | chr7_3:69024023-69024042 | None:intergenic | 50.0% | |
| GGGAAAACGGTGAAGAAGGT+AGG | + | chr7_3:69024272-69024291 | Msa1119890:intron | 50.0% | |
| ACACACCGGCAAACTGAAAG+TGG | - | chr7_3:69024361-69024380 | None:intergenic | 50.0% | |
| TTGCCGGTGTGTGCAAGAAT+TGG | + | chr7_3:69024369-69024388 | Msa1119890:intron | 50.0% | |
| CCTCCAATTCTTGCACACAC+CGG | - | chr7_3:69024375-69024394 | None:intergenic | 50.0% | |
| !! | AGATGATGGAGTCCCTCGTA+CGG | + | chr7_3:69024521-69024540 | Msa1119890:intron | 50.0% |
| CGACAATGGAAAAGTCAGGG+AGG | + | chr7_3:69024800-69024819 | Msa1119890:intron | 50.0% | |
| !! | AGGGAGGGTTGTTGACTTTG+TGG | + | chr7_3:69024816-69024835 | Msa1119890:intron | 50.0% |
| CCAGCTGGAAAGTGGTACAT+TGG | - | chr7_3:69024941-69024960 | None:intergenic | 50.0% | |
| CCAATGTACCACTTTCCAGC+TGG | + | chr7_3:69024938-69024957 | Msa1119890:CDS | 50.0% | |
| ATTGAGCAACCCGGACATGT+GGG | + | chr7_3:69025134-69025153 | Msa1119890:CDS | 50.0% | |
| TCTCATATCCCCACATGTCC+GGG | - | chr7_3:69025146-69025165 | None:intergenic | 50.0% | |
| CTCTCATATCCCCACATGTC+CGG | - | chr7_3:69025147-69025166 | None:intergenic | 50.0% | |
| ATTACGCTTCCAGCTCCTCA+TGG | + | chr7_3:69025246-69025265 | Msa1119890:CDS | 50.0% | |
| ! | GAGGTGTCCAAGGAAGAGTG+AGG | + | chr7_3:69023950-69023969 | Msa1119890:CDS | 55.0% |
| AGAGTGAGGGAGCTGCTTCA+AGG | + | chr7_3:69023964-69023983 | Msa1119890:CDS | 55.0% | |
| GAGCTGCTTCAAGGACATCC+AGG | + | chr7_3:69023973-69023992 | Msa1119890:CDS | 55.0% | |
| CCGGTGTGTGCAAGAATTGG+AGG | + | chr7_3:69024372-69024391 | Msa1119890:intron | 55.0% | |
| ATATGCGCACCACCGTACGA+GGG | - | chr7_3:69024536-69024555 | None:intergenic | 55.0% | |
| CTAAGGGACCAGCTGGAAAG+TGG | - | chr7_3:69024949-69024968 | None:intergenic | 55.0% | |
| CACTTTCCAGCTGGTCCCTT+AGG | + | chr7_3:69024947-69024966 | Msa1119890:CDS | 55.0% | |
| TTCCAGCTGGTCCCTTAGGT+TGG | + | chr7_3:69024951-69024970 | Msa1119890:CDS | 55.0% | |
| AACCAACCTAAGGGACCAGC+TGG | - | chr7_3:69024956-69024975 | None:intergenic | 55.0% | |
| CATTGAGCAACCCGGACATG+TGG | + | chr7_3:69025133-69025152 | Msa1119890:CDS | 55.0% | |
| TTGAGCAACCCGGACATGTG+GGG | + | chr7_3:69025135-69025154 | Msa1119890:CDS | 55.0% | |
| ! | GAGGTGTCCAAGGAAGAGTG+AGG | + | chr7_3:69023950-69023969 | Msa1119890:CDS | 55.0% |
| AGAGTGAGGGAGCTGCTTCA+AGG | + | chr7_3:69023964-69023983 | Msa1119890:CDS | 55.0% | |
| GAGCTGCTTCAAGGACATCC+AGG | + | chr7_3:69023973-69023992 | Msa1119890:CDS | 55.0% | |
| CCGGTGTGTGCAAGAATTGG+AGG | + | chr7_3:69024372-69024391 | Msa1119890:intron | 55.0% | |
| ATATGCGCACCACCGTACGA+GGG | - | chr7_3:69024536-69024555 | None:intergenic | 55.0% | |
| CTAAGGGACCAGCTGGAAAG+TGG | - | chr7_3:69024949-69024968 | None:intergenic | 55.0% | |
| CACTTTCCAGCTGGTCCCTT+AGG | + | chr7_3:69024947-69024966 | Msa1119890:CDS | 55.0% | |
| TTCCAGCTGGTCCCTTAGGT+TGG | + | chr7_3:69024951-69024970 | Msa1119890:CDS | 55.0% | |
| AACCAACCTAAGGGACCAGC+TGG | - | chr7_3:69024956-69024975 | None:intergenic | 55.0% | |
| CATTGAGCAACCCGGACATG+TGG | + | chr7_3:69025133-69025152 | Msa1119890:CDS | 55.0% | |
| TTGAGCAACCCGGACATGTG+GGG | + | chr7_3:69025135-69025154 | Msa1119890:CDS | 55.0% | |
| GCAGCTCCCTCACTCTTCCT+TGG | - | chr7_3:69023960-69023979 | None:intergenic | 60.0% | |
| TGATGGAGTCCCTCGTACGG+TGG | + | chr7_3:69024524-69024543 | Msa1119890:intron | 60.0% | |
| CATATGCGCACCACCGTACG+AGG | - | chr7_3:69024537-69024556 | None:intergenic | 60.0% | |
| GCAGCTCCCTCACTCTTCCT+TGG | - | chr7_3:69023960-69023979 | None:intergenic | 60.0% | |
| TGATGGAGTCCCTCGTACGG+TGG | + | chr7_3:69024524-69024543 | Msa1119890:intron | 60.0% | |
| CATATGCGCACCACCGTACG+AGG | - | chr7_3:69024537-69024556 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 69023802 | 69025341 | 69023802 | ID=Msa1119890;Name=Msa1119890 |
| chr7_3 | mRNA | 69023802 | 69025341 | 69023802 | ID=Msa1119890-mRNA-1;Parent=Msa1119890;Name=Msa1119890-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|1|1|3|0|272 |
| chr7_3 | exon | 69023802 | 69023994 | 69023802 | ID=Msa1119890-mRNA-1:exon:17358;Parent=Msa1119890-mRNA-1 |
| chr7_3 | exon | 69024273 | 69024374 | 69024273 | ID=Msa1119890-mRNA-1:exon:17359;Parent=Msa1119890-mRNA-1 |
| chr7_3 | exon | 69024818 | 69025341 | 69024818 | ID=Msa1119890-mRNA-1:exon:17360;Parent=Msa1119890-mRNA-1 |
| chr7_3 | CDS | 69023802 | 69023994 | 69023802 | ID=Msa1119890-mRNA-1:cds;Parent=Msa1119890-mRNA-1 |
| chr7_3 | CDS | 69024273 | 69024374 | 69024273 | ID=Msa1119890-mRNA-1:cds;Parent=Msa1119890-mRNA-1 |
| chr7_3 | CDS | 69024818 | 69025341 | 69024818 | ID=Msa1119890-mRNA-1:cds;Parent=Msa1119890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
