AlfalfaGEDB | Msa1120940

M. sativa cultivar zhongmu-4 / Msa1120940

KEGG: -
GO: GO:0000003 GO:0000902 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009892 GO:0009987 GO:0010033 GO:0010228 GO:0010605 GO:0010639 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019222 GO:0019538 GO:0022414 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0033044 GO:0033169 GO:0033993 GO:0035065 GO:0035067 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0099402 GO:1901564 GO:1901700 GO:1901983 GO:1901984 GO:1902275 GO:1905268 GO:2000756 GO:2000757 GO:2001251
PFAM: PF02375.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1120940	MCI20043.1	100.000	48	0	0	52	99	89	136	9.90e-27	105

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1120940	sp\|Q5N712\|JM705_ORYSJ	87.234	47	6	0	52	98	245	291	3.20e-24	98.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1120940	A0A072VND5	60.305	131	20	2	1	99	1	131	5.98e-41	140

TFs/TRs:

Gene ID	Type	Classification
Msa1120940	TR	Jumonji

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1120940	MtrunA17_Chr1g0197421	60.000	130	20	2	1	98	1	130	1.01e-43	138
Msa1120940	MtrunA17_Chr3g0116441	100.000	47	0	0	52	98	219	265	2.69e-28	106
Msa1120940	MtrunA17_Chr3g0116441	86.957	46	6	0	1	46	15	60	5.75e-24	94.4
Msa1120940	MtrunA17_Chr1g0199511	60.417	48	19	0	52	99	338	385	3.84e-17	75.1
Msa1120940	MtrunA17_Chr1g0199511	66.667	45	14	1	1	44	13	57	8.15e-16	71.2
Msa1120940	MtrunA17_Chr5g0410721	63.636	44	16	0	52	95	280	323	2.05e-12	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1120940	AT3G48430.1	87.234	47	6	0	52	98	247	293	8.96e-25	97.1
Msa1120940	AT3G48430.1	64.865	37	13	0	1	37	17	53	6.37e-12	60.5
Msa1120940	AT5G04240.1	58.333	48	20	0	52	99	306	353	4.62e-14	66.6
Msa1120940	AT5G04240.1	64.444	45	15	1	1	44	13	57	5.50e-14	66.2
Msa1120940	AT5G46910.1	59.091	44	18	0	52	95	294	337	6.00e-11	57.8
Msa1120940	AT5G46910.2	59.091	44	18	0	52	95	294	337	7.55e-11	57.4

Find 34 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GACCCTTTGGCCCTTGAATT+TGG	0.187974	7_3:-70813398	None:intergenic
AGCTGGAGTGGGTCGGTATT+CGG	0.239347	7_3:-70813284	None:intergenic
GAGGATGTTGTTAGAGTTCA+TGG	0.296735	7_3:+70813602	Msa1120940:CDS
TAGCTTGAATTATCTTCATA+TGG	0.324265	7_3:+70813529	Msa1120940:CDS
GTTGTTAGAGTTCATGGTTA+TGG	0.343745	7_3:+70813608	Msa1120940:CDS
GCTGGAGTGGGTCGGTATTC+GGG	0.344330	7_3:-70813283	None:intergenic
GAAAACCAAGCTTCCAAATT+CGG	0.381270	7_3:+70813343	Msa1120940:CDS
GGTCGGTATTCGGGTGCTAC+TGG	0.434393	7_3:-70813274	None:intergenic
CTTTGGCCCTTGAATTTGGA+AGG	0.452571	7_3:-70813394	None:intergenic
TTGAATTTGGAAGGTGGAAA+AGG	0.454957	7_3:-70813385	None:intergenic
ATTGGATCTTCGAATTCAGC+TGG	0.456740	7_3:-70813301	None:intergenic
AGCTTGAATTATCTTCATAT+GGG	0.462001	7_3:+70813530	Msa1120940:CDS
AGAGTCCGAATTTGGAAGCT+TGG	0.462536	7_3:-70813348	None:intergenic
ATCATGAAAATGTATTCGAT+TGG	0.478299	7_3:-70813319	None:intergenic
AAACCTCAACAAAGACCCTT+TGG	0.483798	7_3:-70813411	None:intergenic
GGTGGAGAGATTAACCCTCT+TGG	0.496887	7_3:+70813629	Msa1120940:CDS
GGTGCTTCTAAGACCTGGTA+TGG	0.509028	7_3:+70813551	Msa1120940:CDS
ATTTGGAAGGTGGAAAAGGA+GGG	0.511614	7_3:-70813381	None:intergenic
ATCTCTAGGAACACCATACC+AGG	0.515561	7_3:-70813564	None:intergenic
TTCCAAATTCAAGGGCCAAA+GGG	0.528642	7_3:+70813396	Msa1120940:CDS
GGGCCAAAGGGTCTTTGTTG+AGG	0.534359	7_3:+70813408	Msa1120940:CDS
AAAGCAACAGCAGCATCTCT+AGG	0.535968	7_3:-70813578	None:intergenic
AATTTGGAAGGTGGAAAAGG+AGG	0.540672	7_3:-70813382	None:intergenic
ATCTTCGAATTCAGCTGGAG+TGG	0.545061	7_3:-70813296	None:intergenic
GTATTCGGGTGCTACTGGCA+TGG	0.554461	7_3:-70813269	None:intergenic
GTTAGAGTTCATGGTTATGG+TGG	0.562896	7_3:+70813611	Msa1120940:CDS
TTTCCACCTTCCAAATTCAA+GGG	0.562964	7_3:+70813388	Msa1120940:CDS
CTTCCAAATTCAAGGGCCAA+AGG	0.564784	7_3:+70813395	Msa1120940:CDS
TCTTCGAATTCAGCTGGAGT+GGG	0.577536	7_3:-70813295	None:intergenic
ATATGGGTGCTTCTAAGACC+TGG	0.590963	7_3:+70813546	Msa1120940:CDS
CGAATTCAGCTGGAGTGGGT+CGG	0.600042	7_3:-70813291	None:intergenic
TCCATGAACTCTAACCAAGA+GGG	0.604035	7_3:-70813643	None:intergenic
TGGCCCTTGAATTTGGAAGG+TGG	0.617375	7_3:-70813391	None:intergenic
ATCCATGAACTCTAACCAAG+AGG	0.634497	7_3:-70813644	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	ATCATGAAAATGTATTCGAT+TGG	-	chr7_3:70813322-70813341	None:intergenic	25.0%
!	TAGCTTGAATTATCTTCATA+TGG	+	chr7_3:70813529-70813548	Msa1120940:CDS	25.0%
!	AGCTTGAATTATCTTCATAT+GGG	+	chr7_3:70813530-70813549	Msa1120940:CDS	25.0%
	GAAAACCAAGCTTCCAAATT+CGG	+	chr7_3:70813343-70813362	Msa1120940:CDS	35.0%
	TTGAATTTGGAAGGTGGAAA+AGG	-	chr7_3:70813388-70813407	None:intergenic	35.0%
!	TTTTCCACCTTCCAAATTCA+AGG	+	chr7_3:70813387-70813406	Msa1120940:CDS	35.0%
	TTTCCACCTTCCAAATTCAA+GGG	+	chr7_3:70813388-70813407	Msa1120940:CDS	35.0%
	GTCTTTGTTGAGGTTTATGA+AGG	+	chr7_3:70813418-70813437	Msa1120940:intron	35.0%
	TTTGTTGAGGTTTATGAAGG+AGG	+	chr7_3:70813421-70813440	Msa1120940:intron	35.0%
!!	ATCTTGCCATGCTTTTTAGT+TGG	+	chr7_3:70813474-70813493	Msa1120940:intron	35.0%
	AGCAAACCAACTAAAAAGCA+TGG	-	chr7_3:70813483-70813502	None:intergenic	35.0%
	GTTGTTAGAGTTCATGGTTA+TGG	+	chr7_3:70813608-70813627	Msa1120940:CDS	35.0%
	ATTGGATCTTCGAATTCAGC+TGG	-	chr7_3:70813304-70813323	None:intergenic	40.0%
!	GATTTTGCAGAGTCCGAATT+TGG	-	chr7_3:70813359-70813378	None:intergenic	40.0%
	ATTTGGAAGGTGGAAAAGGA+GGG	-	chr7_3:70813384-70813403	None:intergenic	40.0%
	AATTTGGAAGGTGGAAAAGG+AGG	-	chr7_3:70813385-70813404	None:intergenic	40.0%
	TTCCAAATTCAAGGGCCAAA+GGG	+	chr7_3:70813396-70813415	Msa1120940:CDS	40.0%
	AAACCTCAACAAAGACCCTT+TGG	-	chr7_3:70813414-70813433	None:intergenic	40.0%
	GTTTATGAAGGAGGAGATAC+CGG	+	chr7_3:70813430-70813449	Msa1120940:intron	40.0%
	TTTATGAAGGAGGAGATACC+GGG	+	chr7_3:70813431-70813450	Msa1120940:intron	40.0%
	AGCATGGCAAGATAAACCAT+AGG	-	chr7_3:70813467-70813486	None:intergenic	40.0%
!!	TAGTTGGTTTGCTTGACATG+TGG	+	chr7_3:70813490-70813509	Msa1120940:intron	40.0%
	GAGGATGTTGTTAGAGTTCA+TGG	+	chr7_3:70813602-70813621	Msa1120940:CDS	40.0%
	GTTAGAGTTCATGGTTATGG+TGG	+	chr7_3:70813611-70813630	Msa1120940:CDS	40.0%
	TCTTCGAATTCAGCTGGAGT+GGG	-	chr7_3:70813298-70813317	None:intergenic	45.0%
	ATCTTCGAATTCAGCTGGAG+TGG	-	chr7_3:70813299-70813318	None:intergenic	45.0%
	AGAGTCCGAATTTGGAAGCT+TGG	-	chr7_3:70813351-70813370	None:intergenic	45.0%
	CTTTGGCCCTTGAATTTGGA+AGG	-	chr7_3:70813397-70813416	None:intergenic	45.0%
	CTTCCAAATTCAAGGGCCAA+AGG	+	chr7_3:70813395-70813414	Msa1120940:CDS	45.0%
!!	TTGGTTTGCTTGACATGTGG+AGG	+	chr7_3:70813493-70813512	Msa1120940:intron	45.0%
!!	ATATGGGTGCTTCTAAGACC+TGG	+	chr7_3:70813546-70813565	Msa1120940:CDS	45.0%
!	ATCTCTAGGAACACCATACC+AGG	-	chr7_3:70813567-70813586	None:intergenic	45.0%
	AAAGCAACAGCAGCATCTCT+AGG	-	chr7_3:70813581-70813600	None:intergenic	45.0%
!!!	AGATGCTGCTGTTGCTTTTG+AGG	+	chr7_3:70813583-70813602	Msa1120940:CDS	45.0%
	TGGCCCTTGAATTTGGAAGG+TGG	-	chr7_3:70813394-70813413	None:intergenic	50.0%
	GACCCTTTGGCCCTTGAATT+TGG	-	chr7_3:70813401-70813420	None:intergenic	50.0%
	ACCATAGGCGAAGTAACTCC+CGG	-	chr7_3:70813452-70813471	None:intergenic	50.0%
!!	GGTGCTTCTAAGACCTGGTA+TGG	+	chr7_3:70813551-70813570	Msa1120940:CDS	50.0%
	GGTGGAGAGATTAACCCTCT+TGG	+	chr7_3:70813629-70813648	Msa1120940:CDS	50.0%
	AGCTGGAGTGGGTCGGTATT+CGG	-	chr7_3:70813287-70813306	None:intergenic	55.0%
	CGAATTCAGCTGGAGTGGGT+CGG	-	chr7_3:70813294-70813313	None:intergenic	55.0%
	GGGCCAAAGGGTCTTTGTTG+AGG	+	chr7_3:70813408-70813427	Msa1120940:CDS	55.0%
	ACCGGGAGTTACTTCGCCTA+TGG	+	chr7_3:70813448-70813467	Msa1120940:intron	55.0%
!	GGTCGGTATTCGGGTGCTAC+TGG	-	chr7_3:70813277-70813296	None:intergenic	60.0%
	GCTGGAGTGGGTCGGTATTC+GGG	-	chr7_3:70813286-70813305	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	70813271	70813655	70813271	ID=Msa1120940;Name=Msa1120940
chr7_3	mRNA	70813271	70813655	70813271	ID=Msa1120940-mRNA-1;Parent=Msa1120940;Name=Msa1120940-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0\|0\|1\|1\|1\|2\|0\|99
chr7_3	exon	70813271	70813429	70813271	ID=Msa1120940-mRNA-1:exon:18029;Parent=Msa1120940-mRNA-1
chr7_3	exon	70813515	70813655	70813515	ID=Msa1120940-mRNA-1:exon:18030;Parent=Msa1120940-mRNA-1
chr7_3	CDS	70813271	70813429	70813271	ID=Msa1120940-mRNA-1:cds;Parent=Msa1120940-mRNA-1
chr7_3	CDS	70813515	70813655	70813515	ID=Msa1120940-mRNA-1:cds;Parent=Msa1120940-mRNA-1

Gene Sequence	>Msa1120940 ATGCCAGTAGCACCCGAATACCGACCCACTCCAGCTGAATTCGAAGATCCAATCGAATACATTTTCATGATCGAAAACCAAGCTTCCAAATTCGGACTCTGCAAAATCATCCCTCCTTTTCCACCTTCCAAATTCAAGGGCCAAAGGGTCTTTGTTGAGGATCATGATTTGCATAGCTTGAATTATCTTCATATGGGTGCTTCTAAGACCTGGTATGGTGTTCCTAGAGATGCTGCTGTTGCTTTTGAGGATGTTGTTAGAGTTCATGGTTATGGTGGAGAGATTAACCCTCTTGGTTAG
Protein sequence	>Msa1120940 MPVAPEYRPTPAEFEDPIEYIFMIENQASKFGLCKIIPPFPPSKFKGQRVFVEDHDLHSLNYLHMGASKTWYGVPRDAAVAFEDVVRVHGYGGEINPLG*