AlfalfaGEDB | Msa1120990

M. sativa cultivar zhongmu-4 / Msa1120990

KEGG: -
GO: GO:0000003 GO:0000902 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009892 GO:0009987 GO:0010033 GO:0010228 GO:0010605 GO:0010639 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019222 GO:0019538 GO:0022414 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0033044 GO:0033169 GO:0033993 GO:0035065 GO:0035067 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0099402 GO:1901564 GO:1901700 GO:1901983 GO:1901984 GO:1902275 GO:1905268 GO:2000756 GO:2000757 GO:2001251
PFAM: PF02375.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1120990	MCI20043.1	100.000	48	0	0	52	99	89	136	8.04e-27	105

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1120990	sp\|Q5N712\|JM705_ORYSJ	87.234	47	6	0	52	98	245	291	3.60e-24	98.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1120990	A0A072VND5	59.542	131	21	2	1	99	1	131	1.66e-40	139

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TFs/TRs:

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Gene ID	Type	Classification
Msa1120990	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1120990	MtrunA17_Chr1g0197421	59.231	130	21	2	1	98	1	130	3.50e-43	137
Msa1120990	MtrunA17_Chr3g0116441	100.000	47	0	0	52	98	219	265	4.01e-28	106
Msa1120990	MtrunA17_Chr3g0116441	84.783	46	7	0	1	46	15	60	4.43e-23	92.0
Msa1120990	MtrunA17_Chr1g0199511	60.417	48	19	0	52	99	338	385	4.57e-17	74.7
Msa1120990	MtrunA17_Chr1g0199511	64.444	45	15	1	1	44	13	57	5.44e-15	68.9
Msa1120990	MtrunA17_Chr5g0410721	63.636	44	16	0	52	95	280	323	2.05e-12	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1120990	AT3G48430.1	87.234	47	6	0	52	98	247	293	1.22e-24	96.7
Msa1120990	AT3G48430.1	62.162	37	14	0	1	37	17	53	4.38e-11	58.2
Msa1120990	AT5G04240.1	58.333	48	20	0	52	99	306	353	5.19e-14	66.6
Msa1120990	AT5G04240.1	62.222	45	16	1	1	44	13	57	3.40e-13	64.3
Msa1120990	AT5G46910.1	59.091	44	18	0	52	95	294	337	6.88e-11	57.8
Msa1120990	AT5G46910.2	59.091	44	18	0	52	95	294	337	8.00e-11	57.4

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Find 33 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTCAACAAAGACCCTT+TGG	0.483798	7_3:+70898714	None:intergenic
AAAGCAACAGCAGCATCTCT+AGG	0.535968	7_3:+70898547	None:intergenic
AATTTGGAAGGTGGAAAAGG+AGG	0.540672	7_3:+70898743	None:intergenic
AGAGTCCGAATTTGGAAGCT+TGG	0.462536	7_3:+70898777	None:intergenic
AGCTGGAGTGGCTCGGTATT+CGG	0.220666	7_3:+70898841	None:intergenic
AGCTTGAATTATCTTCATAT+GGG	0.462001	7_3:-70898595	Msa1120990:CDS
ATATGGGTGCTTCTAAGACC+TGG	0.590963	7_3:-70898579	Msa1120990:CDS
ATCCATGAACTCTAACCAAG+AGG	0.634497	7_3:+70898481	None:intergenic
ATCTCTAGGAACACCATACC+AGG	0.515561	7_3:+70898561	None:intergenic
ATCTTCGAATTCAGCTGGAG+TGG	0.570450	7_3:+70898829	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAACCAAGCTTCCAAATT+CGG	-	chr7_3:70898564-70898583	Msa1120990:CDS	35.0%
TTGAATTTGGAAGGTGGAAA+AGG	+	chr7_3:70898609-70898628	None:intergenic	35.0%
TTTCCACCTTCCAAATTCAA+GGG	-	chr7_3:70898609-70898628	Msa1120990:CDS	35.0%
GTCTTTGTTGAGGTTTATGA+AGG	-	chr7_3:70898639-70898658	Msa1120990:intron	35.0%
TTTGTTGAGGTTTATGAAGG+AGG	-	chr7_3:70898642-70898661	Msa1120990:intron	35.0%
GTTGTTAGAGTTCATGGTTA+TGG	-	chr7_3:70898829-70898848	Msa1120990:CDS	35.0%
ATTGGATCTTCGAATTCAGC+TGG	+	chr7_3:70898525-70898544	None:intergenic	40.0%
ATTTGGAAGGTGGAAAAGGA+GGG	+	chr7_3:70898605-70898624	None:intergenic	40.0%
AATTTGGAAGGTGGAAAAGG+AGG	+	chr7_3:70898606-70898625	None:intergenic	40.0%
TTCCAAATTCAAGGGCCAAA+GGG	-	chr7_3:70898617-70898636	Msa1120990:intron	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	70898492	70898876	70898492	ID=Msa1120990;Name=Msa1120990
chr7_3	mRNA	70898492	70898876	70898492	ID=Msa1120990-mRNA-1;Parent=Msa1120990;Name=Msa1120990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0\|0\|1\|1\|1\|2\|0\|99
chr7_3	exon	70898718	70898876	70898718	ID=Msa1120990-mRNA-1:exon:18065;Parent=Msa1120990-mRNA-1
chr7_3	exon	70898492	70898632	70898492	ID=Msa1120990-mRNA-1:exon:18064;Parent=Msa1120990-mRNA-1
chr7_3	CDS	70898718	70898876	70898718	ID=Msa1120990-mRNA-1:cds;Parent=Msa1120990-mRNA-1
chr7_3	CDS	70898492	70898632	70898492	ID=Msa1120990-mRNA-1:cds;Parent=Msa1120990-mRNA-1

Gene Sequence	>Msa1120990 ATGCCAGTAGCACCCGAATACCGAGCCACTCCAGCTGAATTCGAAGATCCAATCGAATACATTTTCAAGATGGAAAACCAAGCTTCCAAATTCGGACTCTGCAAAATCATCCCTCCTTTTCCACCTTCCAAATTCAAGGGCCAAAGGGTCTTTGTTGAGGATCATGATTTGCATAGCTTGAATTATCTTCATATGGGTGCTTCTAAGACCTGGTATGGTGTTCCTAGAGATGCTGCTGTTGCTTTTGAGGATGTTGTTAGAGTTCATGGTTATGGTGGAGAGATTAACCCTCTTGGTTAG
Protein sequence	>Msa1120990 MPVAPEYRATPAEFEDPIEYIFKMENQASKFGLCKIIPPFPPSKFKGQRVFVEDHDLHSLNYLHMGASKTWYGVPRDAAVAFEDVVRVHGYGGEINPLG*