Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121980 | XP_003624937.2 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.75e-61 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121980 | sp|Q58FS3|RAD_ANTMA | 69.149 | 94 | 26 | 2 | 1 | 92 | 1 | 93 | 1.24e-40 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121980 | A2Q4K0 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 3.70e-61 | 190 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1121980 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121980 | MtrunA17_Chr7g0255841 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.13e-65 | 190 |
| Msa1121980 | MtrunA17_Chr3g0081631 | 72.222 | 90 | 24 | 1 | 4 | 92 | 2 | 91 | 1.26e-44 | 139 |
| Msa1121980 | MtrunA17_Chr6g0449111 | 72.059 | 68 | 19 | 0 | 7 | 74 | 5 | 72 | 6.26e-35 | 114 |
| Msa1121980 | MtrunA17_Chr3g0144631 | 68.354 | 79 | 21 | 1 | 1 | 75 | 1 | 79 | 5.32e-34 | 112 |
| Msa1121980 | MtrunA17_Chr1g0155181 | 59.302 | 86 | 29 | 1 | 6 | 85 | 1 | 86 | 6.14e-33 | 109 |
| Msa1121980 | MtrunA17_Chr3g0141601 | 57.143 | 91 | 35 | 2 | 6 | 92 | 1 | 91 | 3.14e-32 | 107 |
| Msa1121980 | MtrunA17_Chr5g0404101 | 63.014 | 73 | 27 | 0 | 4 | 76 | 11 | 83 | 1.24e-30 | 103 |
| Msa1121980 | MtrunA17_Chr8g0373131 | 56.716 | 67 | 28 | 1 | 9 | 75 | 2 | 67 | 7.81e-25 | 88.6 |
| Msa1121980 | MtrunA17_Chr8g0373111 | 56.716 | 67 | 28 | 1 | 9 | 75 | 2 | 67 | 8.21e-25 | 88.6 |
| Msa1121980 | MtrunA17_Chr8g0373121 | 56.716 | 67 | 28 | 1 | 9 | 75 | 2 | 67 | 8.21e-25 | 88.6 |
| Msa1121980 | MtrunA17_Chr3g0141641 | 45.055 | 91 | 41 | 2 | 11 | 92 | 2 | 92 | 3.32e-24 | 87.4 |
| Msa1121980 | MtrunA17_Chr5g0404301 | 60.317 | 63 | 24 | 1 | 10 | 72 | 2 | 63 | 9.33e-24 | 85.5 |
| Msa1121980 | MtrunA17_Chr8g0373101 | 56.452 | 62 | 26 | 1 | 11 | 72 | 4 | 64 | 6.78e-23 | 83.6 |
| Msa1121980 | MtrunA17_Chr5g0436501 | 54.930 | 71 | 32 | 0 | 12 | 82 | 27 | 97 | 1.30e-20 | 82.8 |
| Msa1121980 | MtrunA17_Chr8g0364741 | 50.667 | 75 | 37 | 0 | 6 | 80 | 4 | 78 | 2.62e-20 | 78.6 |
| Msa1121980 | MtrunA17_Chr1g0162081 | 50.000 | 78 | 39 | 0 | 1 | 78 | 1 | 78 | 1.38e-19 | 80.5 |
| Msa1121980 | MtrunA17_Chr8g0365011 | 54.167 | 72 | 33 | 0 | 9 | 80 | 5 | 76 | 2.84e-19 | 79.3 |
| Msa1121980 | MtrunA17_Chr3g0104071 | 50.685 | 73 | 36 | 0 | 2 | 74 | 33 | 105 | 9.65e-19 | 78.2 |
| Msa1121980 | MtrunA17_Chr5g0429521 | 47.826 | 69 | 36 | 0 | 11 | 79 | 28 | 96 | 5.02e-18 | 76.3 |
| Msa1121980 | MtrunA17_Chr7g0241761 | 52.174 | 69 | 33 | 0 | 12 | 80 | 35 | 103 | 5.19e-18 | 76.3 |
| Msa1121980 | MtrunA17_Chr1g0194071 | 57.627 | 59 | 24 | 1 | 11 | 68 | 10 | 68 | 6.75e-16 | 66.6 |
| Msa1121980 | MtrunA17_Chr1g0210471 | 47.619 | 63 | 33 | 0 | 12 | 74 | 24 | 86 | 7.82e-15 | 67.0 |
| Msa1121980 | MtrunA17_Chr7g0270711 | 55.000 | 60 | 26 | 1 | 11 | 69 | 10 | 69 | 3.19e-14 | 62.0 |
| Msa1121980 | MtrunA17_Chr4g0062741 | 45.205 | 73 | 36 | 2 | 6 | 74 | 1 | 73 | 4.56e-14 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121980 | AT2G21650.1 | 64.773 | 88 | 24 | 1 | 12 | 92 | 14 | 101 | 4.16e-38 | 123 |
| Msa1121980 | AT4G39250.1 | 64.368 | 87 | 25 | 1 | 12 | 92 | 14 | 100 | 1.32e-37 | 122 |
| Msa1121980 | AT1G75250.2 | 55.670 | 97 | 37 | 1 | 1 | 91 | 1 | 97 | 5.60e-36 | 117 |
| Msa1121980 | AT1G75250.1 | 69.333 | 75 | 23 | 0 | 1 | 75 | 1 | 75 | 1.47e-35 | 117 |
| Msa1121980 | AT1G19510.1 | 59.783 | 92 | 37 | 0 | 1 | 92 | 1 | 92 | 2.64e-29 | 100 |
| Msa1121980 | AT2G18328.1 | 62.295 | 61 | 23 | 0 | 15 | 75 | 14 | 74 | 1.84e-24 | 88.2 |
| Msa1121980 | AT5G05790.2 | 52.857 | 70 | 33 | 0 | 9 | 78 | 28 | 97 | 3.54e-20 | 82.0 |
| Msa1121980 | AT5G05790.1 | 52.857 | 70 | 33 | 0 | 9 | 78 | 28 | 97 | 3.54e-20 | 82.0 |
| Msa1121980 | AT4G36570.1 | 75.000 | 44 | 11 | 0 | 12 | 55 | 12 | 55 | 4.92e-20 | 76.3 |
| Msa1121980 | AT3G11280.2 | 52.239 | 67 | 32 | 0 | 12 | 78 | 33 | 99 | 1.03e-18 | 77.8 |
| Msa1121980 | AT3G11280.1 | 52.239 | 67 | 32 | 0 | 12 | 78 | 33 | 99 | 1.03e-18 | 77.8 |
| Msa1121980 | AT2G38090.1 | 52.174 | 69 | 33 | 0 | 12 | 80 | 29 | 97 | 2.27e-18 | 77.4 |
| Msa1121980 | AT5G58900.1 | 50.000 | 74 | 34 | 1 | 4 | 74 | 23 | 96 | 3.03e-17 | 74.3 |
| Msa1121980 | AT5G08520.1 | 52.381 | 63 | 30 | 0 | 12 | 74 | 12 | 74 | 5.44e-16 | 70.9 |
| Msa1121980 | AT1G49010.1 | 46.479 | 71 | 35 | 1 | 7 | 74 | 3 | 73 | 1.43e-14 | 67.4 |
| Msa1121980 | AT5G23650.1 | 46.377 | 69 | 37 | 0 | 6 | 74 | 7 | 75 | 2.01e-14 | 67.0 |
| Msa1121980 | AT5G04760.1 | 41.791 | 67 | 38 | 1 | 8 | 74 | 2 | 67 | 4.55e-13 | 62.4 |
| Msa1121980 | AT5G01200.1 | 42.424 | 66 | 37 | 1 | 10 | 74 | 28 | 93 | 2.05e-11 | 58.2 |
Find 33 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATTAATAAGCTAGTTT+TGG | 0.255773 | 7_3:+72175664 | None:intergenic |
| AAACAGTTGTTGATTCTTCT+AGG | 0.290374 | 7_3:+72174928 | None:intergenic |
| ACCCCTCAATACTAGTAATT+AGG | 0.339755 | 7_3:+72175088 | None:intergenic |
| TTGCTGTTGATTGCACTTGT+TGG | 0.365127 | 7_3:+72175154 | None:intergenic |
| TCTAGCTCAATGTCAGCTTC+TGG | 0.383535 | 7_3:-72175608 | Msa1121980:CDS |
| GATATTAAACATATTGAGTC+AGG | 0.394581 | 7_3:-72175437 | Msa1121980:CDS |
| TAATGTTTCTTAACTTCCTC+AGG | 0.405406 | 7_3:+72175476 | None:intergenic |
| ACCTTGAATTAATTAAGAAA+TGG | 0.426803 | 7_3:-72175633 | Msa1121980:exon |
| GCCATTTCTTAATTAATTCA+AGG | 0.445884 | 7_3:+72175632 | None:intergenic |
| CAATGTCAGCTTCTGGCTCA+TGG | 0.458214 | 7_3:-72175601 | Msa1121980:CDS |
| ATCCTAATTACTAGTATTGA+GGG | 0.459377 | 7_3:-72175090 | Msa1121980:three_prime_UTR |
| CAGTGTCTCATGAGGAGAAA+AGG | 0.467404 | 7_3:-72175382 | Msa1121980:intron |
| TATCCTAATTACTAGTATTG+AGG | 0.475214 | 7_3:-72175091 | Msa1121980:three_prime_UTR |
| TTCTGGCTCATGGAGTGTTA+AGG | 0.488975 | 7_3:-72175591 | Msa1121980:CDS |
| TTGCACTTGTTGGTCAATGA+AGG | 0.513934 | 7_3:+72175164 | None:intergenic |
| TGAGAATTACTTATAAAGAG+TGG | 0.517508 | 7_3:+72175689 | None:intergenic |
| GCTACATTGTACCAACGATC+TGG | 0.520197 | 7_3:+72175521 | None:intergenic |
| TTTCTTAATTAATTCAAGGT+AGG | 0.525340 | 7_3:+72175636 | None:intergenic |
| TAATTAATTCAAGGTAGGAA+AGG | 0.540977 | 7_3:+72175641 | None:intergenic |
| AACAGCTAAAGCTCTTTCAA+AGG | 0.549456 | 7_3:+72175559 | None:intergenic |
| TACTTATAAAGAGTGGTAAG+TGG | 0.568013 | 7_3:+72175696 | None:intergenic |
| ACATTATGAACTTCTTGTTG+AGG | 0.570098 | 7_3:-72175459 | Msa1121980:CDS |
| ACAACAAGAAAAGCAAAGGA+TGG | 0.575663 | 7_3:+72174959 | None:intergenic |
| TTCAACAACAAGAAAAGCAA+AGG | 0.583360 | 7_3:+72174955 | None:intergenic |
| GAAAATTTCAGTGTCTCATG+AGG | 0.590467 | 7_3:-72175390 | Msa1121980:CDS |
| TACAATGTAGCTCATGCTGT+TGG | 0.593737 | 7_3:-72175509 | Msa1121980:CDS |
| AATGTAGCTCATGCTGTTGG+TGG | 0.602491 | 7_3:-72175506 | Msa1121980:CDS |
| ACAAAGACACTCCAGATCGT+TGG | 0.612332 | 7_3:-72175532 | Msa1121980:CDS |
| CAACTTTATTAAGAACGAGG+AGG | 0.657197 | 7_3:+72174903 | None:intergenic |
| ATATTAAACATATTGAGTCA+GGG | 0.667795 | 7_3:-72175436 | Msa1121980:CDS |
| TTACAACTTTATTAAGAACG+AGG | 0.684701 | 7_3:+72174900 | None:intergenic |
| TCCTAATTACTAGTATTGAG+GGG | 0.688545 | 7_3:-72175089 | Msa1121980:three_prime_UTR |
| TGTTGGTGGCAAAACTCCTG+AGG | 0.702099 | 7_3:-72175492 | Msa1121980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATTAATAAGCTAGTTT+TGG | + | chr7_3:72174844-72174863 | None:intergenic | 20.0% |
| !! | TTTCTTAATTAATTCAAGGT+AGG | + | chr7_3:72174872-72174891 | None:intergenic | 20.0% |
| !! | ACCTTGAATTAATTAAGAAA+TGG | - | chr7_3:72174872-72174891 | Msa1121980:three_prime_UTR | 20.0% |
| !! | ATATTAAACATATTGAGTCA+GGG | - | chr7_3:72175069-72175088 | Msa1121980:three_prime_UTR | 20.0% |
| !!! | ATTTTCTTGTAATTTGGAAA+TGG | + | chr7_3:72175101-72175120 | None:intergenic | 20.0% |
| !!! | ACTGAAATTTTCTTGTAATT+TGG | + | chr7_3:72175107-72175126 | None:intergenic | 20.0% |
| !!! | TACTCTTTACTTTCTTTTAT+AGG | - | chr7_3:72175304-72175323 | Msa1121980:intron | 20.0% |
| !!! | GCTTTACTCTTTTTTTTTTT+TGG | - | chr7_3:72175515-72175534 | Msa1121980:CDS | 20.0% |
| !!! | AACAATTAATAAGCTAGTTT+TGG | + | chr7_3:72174844-72174863 | None:intergenic | 20.0% |
| !! | TTTCTTAATTAATTCAAGGT+AGG | + | chr7_3:72174872-72174891 | None:intergenic | 20.0% |
| !! | ACCTTGAATTAATTAAGAAA+TGG | - | chr7_3:72174872-72174891 | Msa1121980:three_prime_UTR | 20.0% |
| !! | ATATTAAACATATTGAGTCA+GGG | - | chr7_3:72175069-72175088 | Msa1121980:three_prime_UTR | 20.0% |
| !!! | ATTTTCTTGTAATTTGGAAA+TGG | + | chr7_3:72175101-72175120 | None:intergenic | 20.0% |
| !!! | ACTGAAATTTTCTTGTAATT+TGG | + | chr7_3:72175107-72175126 | None:intergenic | 20.0% |
| !!! | TACTCTTTACTTTCTTTTAT+AGG | - | chr7_3:72175304-72175323 | Msa1121980:intron | 20.0% |
| !!! | GCTTTACTCTTTTTTTTTTT+TGG | - | chr7_3:72175515-72175534 | Msa1121980:CDS | 20.0% |
| ! | TGAGAATTACTTATAAAGAG+TGG | + | chr7_3:72174819-72174838 | None:intergenic | 25.0% |
| ! | TAATTAATTCAAGGTAGGAA+AGG | + | chr7_3:72174867-72174886 | None:intergenic | 25.0% |
| ! | GCCATTTCTTAATTAATTCA+AGG | + | chr7_3:72174876-72174895 | None:intergenic | 25.0% |
| ! | GATATTAAACATATTGAGTC+AGG | - | chr7_3:72175068-72175087 | Msa1121980:three_prime_UTR | 25.0% |
| !! | TTACTTTCTTTTATAGGATG+AGG | - | chr7_3:72175310-72175329 | Msa1121980:intron | 25.0% |
| ! | TATCCTAATTACTAGTATTG+AGG | - | chr7_3:72175414-72175433 | Msa1121980:CDS | 25.0% |
| !! | ATCCTAATTACTAGTATTGA+GGG | - | chr7_3:72175415-72175434 | Msa1121980:CDS | 25.0% |
| ! | TTACAACTTTATTAAGAACG+AGG | + | chr7_3:72175608-72175627 | None:intergenic | 25.0% |
| ! | TGAGAATTACTTATAAAGAG+TGG | + | chr7_3:72174819-72174838 | None:intergenic | 25.0% |
| ! | TAATTAATTCAAGGTAGGAA+AGG | + | chr7_3:72174867-72174886 | None:intergenic | 25.0% |
| ! | GCCATTTCTTAATTAATTCA+AGG | + | chr7_3:72174876-72174895 | None:intergenic | 25.0% |
| ! | GATATTAAACATATTGAGTC+AGG | - | chr7_3:72175068-72175087 | Msa1121980:three_prime_UTR | 25.0% |
| !! | TTACTTTCTTTTATAGGATG+AGG | - | chr7_3:72175310-72175329 | Msa1121980:intron | 25.0% |
| ! | TATCCTAATTACTAGTATTG+AGG | - | chr7_3:72175414-72175433 | Msa1121980:CDS | 25.0% |
| !! | ATCCTAATTACTAGTATTGA+GGG | - | chr7_3:72175415-72175434 | Msa1121980:CDS | 25.0% |
| ! | TTACAACTTTATTAAGAACG+AGG | + | chr7_3:72175608-72175627 | None:intergenic | 25.0% |
| TACTTATAAAGAGTGGTAAG+TGG | + | chr7_3:72174812-72174831 | None:intergenic | 30.0% | |
| TAATGTTTCTTAACTTCCTC+AGG | + | chr7_3:72175032-72175051 | None:intergenic | 30.0% | |
| ACATTATGAACTTCTTGTTG+AGG | - | chr7_3:72175046-72175065 | Msa1121980:three_prime_UTR | 30.0% | |
| TTATTTAACAAGCAACACGT+AGG | + | chr7_3:72175194-72175213 | None:intergenic | 30.0% | |
| ! | TCCTAATTACTAGTATTGAG+GGG | - | chr7_3:72175416-72175435 | Msa1121980:CDS | 30.0% |
| TTCAACAACAAGAAAAGCAA+AGG | + | chr7_3:72175553-72175572 | None:intergenic | 30.0% | |
| !! | AAACAGTTGTTGATTCTTCT+AGG | + | chr7_3:72175580-72175599 | None:intergenic | 30.0% |
| TACTTATAAAGAGTGGTAAG+TGG | + | chr7_3:72174812-72174831 | None:intergenic | 30.0% | |
| TAATGTTTCTTAACTTCCTC+AGG | + | chr7_3:72175032-72175051 | None:intergenic | 30.0% | |
| ACATTATGAACTTCTTGTTG+AGG | - | chr7_3:72175046-72175065 | Msa1121980:three_prime_UTR | 30.0% | |
| TTATTTAACAAGCAACACGT+AGG | + | chr7_3:72175194-72175213 | None:intergenic | 30.0% | |
| ! | TCCTAATTACTAGTATTGAG+GGG | - | chr7_3:72175416-72175435 | Msa1121980:CDS | 30.0% |
| TTCAACAACAAGAAAAGCAA+AGG | + | chr7_3:72175553-72175572 | None:intergenic | 30.0% | |
| !! | AAACAGTTGTTGATTCTTCT+AGG | + | chr7_3:72175580-72175599 | None:intergenic | 30.0% |
| AACAGCTAAAGCTCTTTCAA+AGG | + | chr7_3:72174949-72174968 | None:intergenic | 35.0% | |
| GAAAATTTCAGTGTCTCATG+AGG | - | chr7_3:72175115-72175134 | Msa1121980:three_prime_UTR | 35.0% | |
| ACCCCTCAATACTAGTAATT+AGG | + | chr7_3:72175420-72175439 | None:intergenic | 35.0% | |
| ACAACAAGAAAAGCAAAGGA+TGG | + | chr7_3:72175549-72175568 | None:intergenic | 35.0% | |
| CAACTTTATTAAGAACGAGG+AGG | + | chr7_3:72175605-72175624 | None:intergenic | 35.0% | |
| AACAGCTAAAGCTCTTTCAA+AGG | + | chr7_3:72174949-72174968 | None:intergenic | 35.0% | |
| GAAAATTTCAGTGTCTCATG+AGG | - | chr7_3:72175115-72175134 | Msa1121980:three_prime_UTR | 35.0% | |
| ACCCCTCAATACTAGTAATT+AGG | + | chr7_3:72175420-72175439 | None:intergenic | 35.0% | |
| ACAACAAGAAAAGCAAAGGA+TGG | + | chr7_3:72175549-72175568 | None:intergenic | 35.0% | |
| CAACTTTATTAAGAACGAGG+AGG | + | chr7_3:72175605-72175624 | None:intergenic | 35.0% | |
| TACAATGTAGCTCATGCTGT+TGG | - | chr7_3:72174996-72175015 | Msa1121980:three_prime_UTR | 40.0% | |
| ! | TTGCACTTGTTGGTCAATGA+AGG | + | chr7_3:72175344-72175363 | None:intergenic | 40.0% |
| ! | TTGCTGTTGATTGCACTTGT+TGG | + | chr7_3:72175354-72175373 | None:intergenic | 40.0% |
| TACAATGTAGCTCATGCTGT+TGG | - | chr7_3:72174996-72175015 | Msa1121980:three_prime_UTR | 40.0% | |
| ! | TTGCACTTGTTGGTCAATGA+AGG | + | chr7_3:72175344-72175363 | None:intergenic | 40.0% |
| ! | TTGCTGTTGATTGCACTTGT+TGG | + | chr7_3:72175354-72175373 | None:intergenic | 40.0% |
| ! | TCTAGCTCAATGTCAGCTTC+TGG | - | chr7_3:72174897-72174916 | Msa1121980:three_prime_UTR | 45.0% |
| !! | TTCTGGCTCATGGAGTGTTA+AGG | - | chr7_3:72174914-72174933 | Msa1121980:three_prime_UTR | 45.0% |
| ACAAAGACACTCCAGATCGT+TGG | - | chr7_3:72174973-72174992 | Msa1121980:three_prime_UTR | 45.0% | |
| GCTACATTGTACCAACGATC+TGG | + | chr7_3:72174987-72175006 | None:intergenic | 45.0% | |
| AATGTAGCTCATGCTGTTGG+TGG | - | chr7_3:72174999-72175018 | Msa1121980:three_prime_UTR | 45.0% | |
| CAGTGTCTCATGAGGAGAAA+AGG | - | chr7_3:72175123-72175142 | Msa1121980:three_prime_UTR | 45.0% | |
| ! | TCTAGCTCAATGTCAGCTTC+TGG | - | chr7_3:72174897-72174916 | Msa1121980:three_prime_UTR | 45.0% |
| !! | TTCTGGCTCATGGAGTGTTA+AGG | - | chr7_3:72174914-72174933 | Msa1121980:three_prime_UTR | 45.0% |
| ACAAAGACACTCCAGATCGT+TGG | - | chr7_3:72174973-72174992 | Msa1121980:three_prime_UTR | 45.0% | |
| GCTACATTGTACCAACGATC+TGG | + | chr7_3:72174987-72175006 | None:intergenic | 45.0% | |
| AATGTAGCTCATGCTGTTGG+TGG | - | chr7_3:72174999-72175018 | Msa1121980:three_prime_UTR | 45.0% | |
| CAGTGTCTCATGAGGAGAAA+AGG | - | chr7_3:72175123-72175142 | Msa1121980:three_prime_UTR | 45.0% | |
| !! | CAATGTCAGCTTCTGGCTCA+TGG | - | chr7_3:72174904-72174923 | Msa1121980:three_prime_UTR | 50.0% |
| !! | TGTTGGTGGCAAAACTCCTG+AGG | - | chr7_3:72175013-72175032 | Msa1121980:three_prime_UTR | 50.0% |
| !! | CAATGTCAGCTTCTGGCTCA+TGG | - | chr7_3:72174904-72174923 | Msa1121980:three_prime_UTR | 50.0% |
| !! | TGTTGGTGGCAAAACTCCTG+AGG | - | chr7_3:72175013-72175032 | Msa1121980:three_prime_UTR | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 72174806 | 72175721 | 72174806 | ID=Msa1121980;Name=Msa1121980 |
| chr7_3 | mRNA | 72174806 | 72175721 | 72174806 | ID=Msa1121980-mRNA-1;Parent=Msa1121980;Name=Msa1121980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=85|1|1|1|1|1|2|371|92 |
| chr7_3 | exon | 72174806 | 72175201 | 72174806 | ID=Msa1121980-mRNA-1:exon:18665;Parent=Msa1121980-mRNA-1 |
| chr7_3 | exon | 72175383 | 72175721 | 72175383 | ID=Msa1121980-mRNA-1:exon:18664;Parent=Msa1121980-mRNA-1 |
| chr7_3 | five_prime_UTR | 72175637 | 72175721 | 72175637 | ID=Msa1121980-mRNA-1:five_prime_utr;Parent=Msa1121980-mRNA-1 |
| chr7_3 | CDS | 72175383 | 72175636 | 72175383 | ID=Msa1121980-mRNA-1:cds;Parent=Msa1121980-mRNA-1 |
| chr7_3 | CDS | 72175177 | 72175201 | 72175177 | ID=Msa1121980-mRNA-1:cds;Parent=Msa1121980-mRNA-1 |
| chr7_3 | three_prime_UTR | 72174806 | 72175176 | 72174806 | ID=Msa1121980-mRNA-1:three_prime_utr;Parent=Msa1121980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
