Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1122300 | XP_039683226.1 | 98.406 | 251 | 3 | 1 | 1 | 251 | 1 | 250 | 7.88e-180 | 504 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1122300 | sp|O80674|BH106_ARATH | 61.644 | 219 | 78 | 5 | 18 | 233 | 10 | 225 | 2.12e-79 | 242 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1122300 | A0A396H4N2 | 98.406 | 251 | 3 | 1 | 1 | 251 | 1 | 250 | 3.77e-180 | 504 |
Gene ID | Type | Classification |
---|---|---|
Msa1122300 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1122300 | MtrunA17_Chr7g0255961 | 98.406 | 251 | 3 | 1 | 1 | 251 | 1 | 250 | 0.0 | 504 |
Msa1122300 | MtrunA17_Chr1g0198801 | 49.738 | 191 | 89 | 3 | 59 | 243 | 141 | 330 | 7.35e-48 | 161 |
Msa1122300 | MtrunA17_Chr3g0113721 | 40.625 | 192 | 96 | 4 | 68 | 243 | 31 | 220 | 2.25e-41 | 141 |
Msa1122300 | MtrunA17_Chr2g0325521 | 45.810 | 179 | 90 | 3 | 71 | 243 | 54 | 231 | 1.18e-33 | 122 |
Msa1122300 | MtrunA17_Chr4g0041051 | 42.553 | 188 | 91 | 5 | 68 | 243 | 60 | 242 | 1.26e-28 | 108 |
Msa1122300 | MtrunA17_Chr5g0412371 | 35.096 | 208 | 114 | 5 | 32 | 233 | 7 | 199 | 6.86e-28 | 105 |
Msa1122300 | MtrunA17_Chr5g0427361 | 37.931 | 174 | 80 | 3 | 59 | 206 | 19 | 190 | 5.54e-23 | 94.0 |
Msa1122300 | MtrunA17_Chr4g0045901 | 38.415 | 164 | 96 | 4 | 70 | 230 | 69 | 230 | 4.74e-22 | 92.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1122300 | AT2G41130.1 | 61.644 | 219 | 78 | 5 | 18 | 233 | 10 | 225 | 2.16e-80 | 242 |
Msa1122300 | AT3G56770.1 | 60.825 | 194 | 62 | 4 | 69 | 250 | 38 | 229 | 2.80e-73 | 223 |
Msa1122300 | AT1G68810.1 | 46.231 | 199 | 95 | 3 | 57 | 243 | 151 | 349 | 1.44e-46 | 159 |
Msa1122300 | AT3G25710.1 | 58.571 | 140 | 56 | 1 | 72 | 211 | 128 | 265 | 2.71e-44 | 152 |
Msa1122300 | AT2G40200.1 | 41.579 | 190 | 94 | 4 | 71 | 245 | 58 | 245 | 6.63e-35 | 125 |
Msa1122300 | AT4G38070.1 | 34.254 | 181 | 103 | 5 | 26 | 206 | 50 | 214 | 1.46e-21 | 90.9 |
Find 74 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAATCGTAATTAACTATT+TGG | 0.156759 | 7_3:+72698788 | None:intergenic |
GACTGTTATTTCGTCCGTTT+CGG | 0.283104 | 7_3:+72699378 | None:intergenic |
GAGACTTGAGGATTTCAATT+AGG | 0.288498 | 7_3:+72699266 | None:intergenic |
TTTCAATTAGGTCGGGAATT+AGG | 0.301702 | 7_3:+72699278 | None:intergenic |
ATGGTGGAGTAGTAGTAATA+AGG | 0.320333 | 7_3:+72700924 | None:intergenic |
CAACAGATTCAGAATAATAT+TGG | 0.370222 | 7_3:-72700814 | Msa1122300:CDS |
AACTACTAGTACTGATGTAT+AGG | 0.381986 | 7_3:+72698980 | None:intergenic |
TGGTGGAGTAGTAGTAATAA+GGG | 0.382130 | 7_3:+72700925 | None:intergenic |
GAATTCACTTAGGTCTTTGT+TGG | 0.385824 | 7_3:-72699128 | Msa1122300:CDS |
TAGAAAGCTAGTGTAGGTTA+TGG | 0.430337 | 7_3:+72700905 | None:intergenic |
TGTTGCATCATAGTGCTACT+AGG | 0.431842 | 7_3:+72700721 | None:intergenic |
AAAGAGATAAGGAAGAGAAA+GGG | 0.435396 | 7_3:+72700850 | None:intergenic |
GAAAGAGATAAGGAAGAGAA+AGG | 0.446668 | 7_3:+72700849 | None:intergenic |
GCTGAAATGGCCACACTTGG+AGG | 0.451338 | 7_3:-72699223 | Msa1122300:CDS |
GTCGAAAAGGCGTCGAGGGT+TGG | 0.453710 | 7_3:-72699080 | Msa1122300:CDS |
GTTGAGTATTCAAAGAATGA+AGG | 0.456323 | 7_3:+72700745 | None:intergenic |
CATTGGGTTAAGATAAGTTA+AGG | 0.457884 | 7_3:+72699043 | None:intergenic |
CACTTAGGTCTTTGTTGGAT+AGG | 0.462227 | 7_3:-72699123 | Msa1122300:CDS |
CACTGCAAATCAATCTGCAT+TGG | 0.466060 | 7_3:+72699026 | None:intergenic |
AGGAAGCTGAGAAGAGAAGA+AGG | 0.471315 | 7_3:-72700582 | Msa1122300:CDS |
GTAGTAATAAGGGGAAGGAA+AGG | 0.472830 | 7_3:+72700935 | None:intergenic |
GGGGAAGGAAAGGGAGTGAG+TGG | 0.478776 | 7_3:+72700945 | None:intergenic |
AAGCAGCTAGAGCTCTATCT+TGG | 0.482896 | 7_3:+72700617 | None:intergenic |
GTTATTTCGTCCGTTTCGGA+TGG | 0.483862 | 7_3:+72699382 | None:intergenic |
GTAATTTCAGAAACTTCAAA+GGG | 0.483898 | 7_3:+72700655 | None:intergenic |
ACTACTAGTACTGATGTATA+GGG | 0.486079 | 7_3:+72698981 | None:intergenic |
CTTGAGGATTTCAATTAGGT+CGG | 0.491066 | 7_3:+72699270 | None:intergenic |
GGCAATGACATCTCCGACGA+AGG | 0.495302 | 7_3:-72699346 | Msa1122300:CDS |
TTGAGGATTTCAATTAGGTC+GGG | 0.495547 | 7_3:+72699271 | None:intergenic |
AGTAATTTCAGAAACTTCAA+AGG | 0.496460 | 7_3:+72700654 | None:intergenic |
AAGAGATAAGGAAGAGAAAG+GGG | 0.505760 | 7_3:+72700851 | None:intergenic |
TAGTAATAAGGGGAAGGAAA+GGG | 0.506583 | 7_3:+72700936 | None:intergenic |
AAAGCTAGTGTAGGTTATGG+TGG | 0.508254 | 7_3:+72700908 | None:intergenic |
CCTTGGAGTTGCAAGGGAGA+AGG | 0.512266 | 7_3:+72700524 | None:intergenic |
AAAGCTGAAATGGCCACACT+TGG | 0.515003 | 7_3:-72699226 | Msa1122300:CDS |
ACTGCAAATCAATCTGCATT+GGG | 0.520969 | 7_3:+72699027 | None:intergenic |
CTTGGAGTTGCAAGGGAGAA+GGG | 0.521866 | 7_3:+72700525 | None:intergenic |
AGAGATAAGGAAGAGAAAGG+GGG | 0.522706 | 7_3:+72700852 | None:intergenic |
TTCGTCCGTTTCGGATGGAA+CGG | 0.524569 | 7_3:+72699387 | None:intergenic |
GAGATAAGGAAGAGAAAGGG+GGG | 0.530773 | 7_3:+72700853 | None:intergenic |
TGATAACCTTGTTACTTCCA+AGG | 0.531796 | 7_3:+72698892 | None:intergenic |
GAAATAACAGTCATATCTGC+AGG | 0.539469 | 7_3:-72699367 | Msa1122300:CDS |
GATTCAGAATAATATTGGTA+TGG | 0.539541 | 7_3:-72700809 | Msa1122300:CDS |
TCTTTGTTGGATAGGTCTAG+TGG | 0.542993 | 7_3:-72699115 | Msa1122300:CDS |
GAAGCATTGTGAAAGAGATA+AGG | 0.544855 | 7_3:+72700839 | None:intergenic |
TTGAGTATTCAAAGAATGAA+GGG | 0.546799 | 7_3:+72700746 | None:intergenic |
CCTTCTCCCTTGCAACTCCA+AGG | 0.549041 | 7_3:-72700524 | Msa1122300:intron |
ATAATAACCTTGGAGTTGCA+AGG | 0.549750 | 7_3:+72700517 | None:intergenic |
GGTCTAGTGGTTGTAACGAT+AGG | 0.565435 | 7_3:-72699102 | Msa1122300:CDS |
GAGTAGTAGTAATAAGGGGA+AGG | 0.570776 | 7_3:+72700930 | None:intergenic |
TAATAACCTTGGAGTTGCAA+GGG | 0.573577 | 7_3:+72700518 | None:intergenic |
ATAGAATAGAAAGCTAGTGT+AGG | 0.573634 | 7_3:+72700899 | None:intergenic |
AAGGGAGAAGGGTACGAAGA+TGG | 0.575464 | 7_3:+72700536 | None:intergenic |
CGAAACCGTTCCATCCGAAA+CGG | 0.575955 | 7_3:-72699392 | Msa1122300:CDS |
GAATATGAGTCTGCCTTCGT+CGG | 0.576237 | 7_3:+72699333 | None:intergenic |
ATAGGTCGAAAAGGCGTCGA+GGG | 0.576982 | 7_3:-72699084 | Msa1122300:CDS |
GTTGTAACGATAGGTCGAAA+AGG | 0.580273 | 7_3:-72699093 | Msa1122300:CDS |
GGTGGAGTAGTAGTAATAAG+GGG | 0.585789 | 7_3:+72700926 | None:intergenic |
TAGAGCTCTATCTTGGTGAG+AGG | 0.587097 | 7_3:+72700624 | None:intergenic |
AATTAGGTCGGGAATTAGGT+CGG | 0.587819 | 7_3:+72699282 | None:intergenic |
TTTCAGAAACTTCAAAGGGG+TGG | 0.587837 | 7_3:+72700659 | None:intergenic |
AGAGCTCTATCTTGGTGAGA+GGG | 0.588854 | 7_3:+72700625 | None:intergenic |
ACGTGTTCTTCCTCCAAGTG+TGG | 0.600825 | 7_3:+72699213 | None:intergenic |
GGAAGCTGAGAAGAGAAGAA+GGG | 0.604105 | 7_3:-72700581 | Msa1122300:CDS |
AAGAACACGTAACGTTCTTG+TGG | 0.618248 | 7_3:-72699200 | Msa1122300:CDS |
AGATAAGGAAGAGAAAGGGG+GGG | 0.623313 | 7_3:+72700854 | None:intergenic |
ATAGAGCCTTGGAAGTAACA+AGG | 0.623435 | 7_3:-72698898 | Msa1122300:three_prime_UTR |
GAAGGGTACGAAGATGGTCA+AGG | 0.633890 | 7_3:+72700542 | None:intergenic |
AGCTGCTTTGAAGAATCACA+AGG | 0.645458 | 7_3:-72700602 | Msa1122300:CDS |
ATGAAGGGTTGTTAGCAACA+AGG | 0.651347 | 7_3:+72700761 | None:intergenic |
ATGTATAGGGAATGAAAATG+TGG | 0.657149 | 7_3:+72698994 | None:intergenic |
GATAGGTCGAAAAGGCGTCG+AGG | 0.658588 | 7_3:-72699085 | Msa1122300:CDS |
TGATTGATTTCAGACAGACA+AGG | 0.674472 | 7_3:-72699485 | Msa1122300:intron |
TAATTTCAGAAACTTCAAAG+GGG | 0.757536 | 7_3:+72700656 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTTTTTTTTTATACTATTTA+AGG | + | chr7_3:72699797-72699816 | None:intergenic | 10.0% |
!!! | GTTTTTTTTTATACTATTTA+AGG | + | chr7_3:72699797-72699816 | None:intergenic | 10.0% |
!!! | TAGATCCTTAATTATTTTTT+TGG | - | chr7_3:72699591-72699610 | Msa1122300:intron | 15.0% |
!! | AAGTTCCAAAAAAATAATTA+AGG | + | chr7_3:72699599-72699618 | None:intergenic | 15.0% |
!! | TTTCAATTTGCAAATAAATT+TGG | + | chr7_3:72699819-72699838 | None:intergenic | 15.0% |
!!! | TTATAGGTTTTTAAAAATTG+AGG | + | chr7_3:72700058-72700077 | None:intergenic | 15.0% |
!!! | TCAATTTTTAAAAACCTATA+AGG | - | chr7_3:72700057-72700076 | Msa1122300:intron | 15.0% |
!!! | TAGATCCTTAATTATTTTTT+TGG | - | chr7_3:72699591-72699610 | Msa1122300:intron | 15.0% |
!! | AAGTTCCAAAAAAATAATTA+AGG | + | chr7_3:72699599-72699618 | None:intergenic | 15.0% |
!! | TTTCAATTTGCAAATAAATT+TGG | + | chr7_3:72699819-72699838 | None:intergenic | 15.0% |
!!! | TTATAGGTTTTTAAAAATTG+AGG | + | chr7_3:72700058-72700077 | None:intergenic | 15.0% |
!!! | TCAATTTTTAAAAACCTATA+AGG | - | chr7_3:72700057-72700076 | Msa1122300:intron | 15.0% |
!! | AATGATGAAAATAATAACCT+TGG | + | chr7_3:72699252-72699271 | None:intergenic | 20.0% |
!! | TCATTGTTAATTATTTGTCT+TGG | - | chr7_3:72699267-72699286 | Msa1122300:CDS | 20.0% |
!!! | TTTCACTCTTTTTTTTTTGT+TGG | + | chr7_3:72699425-72699444 | None:intergenic | 20.0% |
!! | ATCAATCGTAATTAACTATT+TGG | + | chr7_3:72700971-72700990 | None:intergenic | 20.0% |
!! | AATGATGAAAATAATAACCT+TGG | + | chr7_3:72699252-72699271 | None:intergenic | 20.0% |
!! | TCATTGTTAATTATTTGTCT+TGG | - | chr7_3:72699267-72699286 | Msa1122300:CDS | 20.0% |
!!! | TTTCACTCTTTTTTTTTTGT+TGG | + | chr7_3:72699425-72699444 | None:intergenic | 20.0% |
!! | ATCAATCGTAATTAACTATT+TGG | + | chr7_3:72700971-72700990 | None:intergenic | 20.0% |
!! | AGTTTATGAGTAGAATTTTG+TGG | + | chr7_3:72698788-72698807 | None:intergenic | 25.0% |
! | CAACAGATTCAGAATAATAT+TGG | - | chr7_3:72698942-72698961 | Msa1122300:three_prime_UTR | 25.0% |
! | GATTCAGAATAATATTGGTA+TGG | - | chr7_3:72698947-72698966 | Msa1122300:three_prime_UTR | 25.0% |
! | TTGAGTATTCAAAGAATGAA+GGG | + | chr7_3:72699013-72699032 | None:intergenic | 25.0% |
! | TAATTTCAGAAACTTCAAAG+GGG | + | chr7_3:72699103-72699122 | None:intergenic | 25.0% |
! | GTAATTTCAGAAACTTCAAA+GGG | + | chr7_3:72699104-72699123 | None:intergenic | 25.0% |
! | AGTAATTTCAGAAACTTCAA+AGG | + | chr7_3:72699105-72699124 | None:intergenic | 25.0% |
!! | TTTTGTTCTTTTGTTCTCAA+AGG | - | chr7_3:72699327-72699346 | Msa1122300:CDS | 25.0% |
! | CTTAATTACTAAAGTGAGAA+AGG | + | chr7_3:72699489-72699508 | None:intergenic | 25.0% |
! | TTCCCAACAAAAAATATGTA+AGG | - | chr7_3:72699742-72699761 | Msa1122300:intron | 25.0% |
!!! | TGCCTTACATATTTTTTGTT+GGG | + | chr7_3:72699747-72699766 | None:intergenic | 25.0% |
!!! | TTGCCTTACATATTTTTTGT+TGG | + | chr7_3:72699748-72699767 | None:intergenic | 25.0% |
! | CTTAATTAATCTCATCTTGA+TGG | + | chr7_3:72699929-72699948 | None:intergenic | 25.0% |
! | CTAATACATGTTTACATATG+TGG | + | chr7_3:72700129-72700148 | None:intergenic | 25.0% |
!! | ATTTTCTTCAGAATTCACTT+AGG | - | chr7_3:72700618-72700637 | Msa1122300:CDS | 25.0% |
!!! | GTGTTCAGTTATTTTGTAAT+AGG | - | chr7_3:72700806-72700825 | Msa1122300:CDS | 25.0% |
!! | AGTTTATGAGTAGAATTTTG+TGG | + | chr7_3:72698788-72698807 | None:intergenic | 25.0% |
! | CAACAGATTCAGAATAATAT+TGG | - | chr7_3:72698942-72698961 | Msa1122300:three_prime_UTR | 25.0% |
! | GATTCAGAATAATATTGGTA+TGG | - | chr7_3:72698947-72698966 | Msa1122300:three_prime_UTR | 25.0% |
! | TTGAGTATTCAAAGAATGAA+GGG | + | chr7_3:72699013-72699032 | None:intergenic | 25.0% |
! | TAATTTCAGAAACTTCAAAG+GGG | + | chr7_3:72699103-72699122 | None:intergenic | 25.0% |
! | GTAATTTCAGAAACTTCAAA+GGG | + | chr7_3:72699104-72699123 | None:intergenic | 25.0% |
! | AGTAATTTCAGAAACTTCAA+AGG | + | chr7_3:72699105-72699124 | None:intergenic | 25.0% |
!! | TTTTGTTCTTTTGTTCTCAA+AGG | - | chr7_3:72699327-72699346 | Msa1122300:CDS | 25.0% |
! | CTTAATTACTAAAGTGAGAA+AGG | + | chr7_3:72699489-72699508 | None:intergenic | 25.0% |
! | TTCCCAACAAAAAATATGTA+AGG | - | chr7_3:72699742-72699761 | Msa1122300:intron | 25.0% |
!!! | TGCCTTACATATTTTTTGTT+GGG | + | chr7_3:72699747-72699766 | None:intergenic | 25.0% |
!!! | TTGCCTTACATATTTTTTGT+TGG | + | chr7_3:72699748-72699767 | None:intergenic | 25.0% |
! | CTTAATTAATCTCATCTTGA+TGG | + | chr7_3:72699929-72699948 | None:intergenic | 25.0% |
! | CTAATACATGTTTACATATG+TGG | + | chr7_3:72700129-72700148 | None:intergenic | 25.0% |
!! | ATTTTCTTCAGAATTCACTT+AGG | - | chr7_3:72700618-72700637 | Msa1122300:CDS | 25.0% |
!!! | GTGTTCAGTTATTTTGTAAT+AGG | - | chr7_3:72700806-72700825 | Msa1122300:CDS | 25.0% |
! | TTATGAGTAGAATTTTGTGG+TGG | + | chr7_3:72698785-72698804 | None:intergenic | 30.0% |
ATAGAATAGAAAGCTAGTGT+AGG | + | chr7_3:72698860-72698879 | None:intergenic | 30.0% | |
AAAGAGATAAGGAAGAGAAA+GGG | + | chr7_3:72698909-72698928 | None:intergenic | 30.0% | |
GTTGAGTATTCAAAGAATGA+AGG | + | chr7_3:72699014-72699033 | None:intergenic | 30.0% | |
! | CTTTAGTAATTAAGTTGCCA+TGG | - | chr7_3:72699495-72699514 | Msa1122300:intron | 30.0% |
! | TGTCTGAAGTAGTGTATATT+CGG | - | chr7_3:72699701-72699720 | Msa1122300:intron | 30.0% |
TGCAAATTGAAAATTGAGCT+AGG | - | chr7_3:72699827-72699846 | Msa1122300:intron | 30.0% | |
GCAAATTGAAAATTGAGCTA+GGG | - | chr7_3:72699828-72699847 | Msa1122300:intron | 30.0% | |
!!! | GATGGTTATTTTGAATGCTA+GGG | + | chr7_3:72699911-72699930 | None:intergenic | 30.0% |
!!! | TGATGGTTATTTTGAATGCT+AGG | + | chr7_3:72699912-72699931 | None:intergenic | 30.0% |
TGATGAAGAAAGCAAAGTTT+AGG | - | chr7_3:72700151-72700170 | Msa1122300:intron | 30.0% | |
!!! | TTTCAGCTTTGAGAGTTTTT+AGG | + | chr7_3:72700520-72700539 | None:intergenic | 30.0% |
AAAAACTCTCAAAGCTGAAA+TGG | - | chr7_3:72700520-72700539 | Msa1122300:intron | 30.0% | |
CATTGGGTTAAGATAAGTTA+AGG | + | chr7_3:72700716-72700735 | None:intergenic | 30.0% | |
ATGTATAGGGAATGAAAATG+TGG | + | chr7_3:72700765-72700784 | None:intergenic | 30.0% | |
!! | ACTACTAGTACTGATGTATA+GGG | + | chr7_3:72700778-72700797 | None:intergenic | 30.0% |
!! | AACTACTAGTACTGATGTAT+AGG | + | chr7_3:72700779-72700798 | None:intergenic | 30.0% |
! | TTATGAGTAGAATTTTGTGG+TGG | + | chr7_3:72698785-72698804 | None:intergenic | 30.0% |
ATAGAATAGAAAGCTAGTGT+AGG | + | chr7_3:72698860-72698879 | None:intergenic | 30.0% | |
AAAGAGATAAGGAAGAGAAA+GGG | + | chr7_3:72698909-72698928 | None:intergenic | 30.0% | |
GTTGAGTATTCAAAGAATGA+AGG | + | chr7_3:72699014-72699033 | None:intergenic | 30.0% | |
! | CTTTAGTAATTAAGTTGCCA+TGG | - | chr7_3:72699495-72699514 | Msa1122300:intron | 30.0% |
! | TGTCTGAAGTAGTGTATATT+CGG | - | chr7_3:72699701-72699720 | Msa1122300:intron | 30.0% |
TGCAAATTGAAAATTGAGCT+AGG | - | chr7_3:72699827-72699846 | Msa1122300:intron | 30.0% | |
GCAAATTGAAAATTGAGCTA+GGG | - | chr7_3:72699828-72699847 | Msa1122300:intron | 30.0% | |
!!! | GATGGTTATTTTGAATGCTA+GGG | + | chr7_3:72699911-72699930 | None:intergenic | 30.0% |
!!! | TGATGGTTATTTTGAATGCT+AGG | + | chr7_3:72699912-72699931 | None:intergenic | 30.0% |
TGATGAAGAAAGCAAAGTTT+AGG | - | chr7_3:72700151-72700170 | Msa1122300:intron | 30.0% | |
!!! | TTTCAGCTTTGAGAGTTTTT+AGG | + | chr7_3:72700520-72700539 | None:intergenic | 30.0% |
AAAAACTCTCAAAGCTGAAA+TGG | - | chr7_3:72700520-72700539 | Msa1122300:intron | 30.0% | |
CATTGGGTTAAGATAAGTTA+AGG | + | chr7_3:72700716-72700735 | None:intergenic | 30.0% | |
ATGTATAGGGAATGAAAATG+TGG | + | chr7_3:72700765-72700784 | None:intergenic | 30.0% | |
!! | ACTACTAGTACTGATGTATA+GGG | + | chr7_3:72700778-72700797 | None:intergenic | 30.0% |
!! | AACTACTAGTACTGATGTAT+AGG | + | chr7_3:72700779-72700798 | None:intergenic | 30.0% |
TAGTAATAAGGGGAAGGAAA+GGG | + | chr7_3:72698823-72698842 | None:intergenic | 35.0% | |
TGGTGGAGTAGTAGTAATAA+GGG | + | chr7_3:72698834-72698853 | None:intergenic | 35.0% | |
! | ATGGTGGAGTAGTAGTAATA+AGG | + | chr7_3:72698835-72698854 | None:intergenic | 35.0% |
TAGAAAGCTAGTGTAGGTTA+TGG | + | chr7_3:72698854-72698873 | None:intergenic | 35.0% | |
AAGAGATAAGGAAGAGAAAG+GGG | + | chr7_3:72698908-72698927 | None:intergenic | 35.0% | |
GAAAGAGATAAGGAAGAGAA+AGG | + | chr7_3:72698910-72698929 | None:intergenic | 35.0% | |
!! | GAAGCATTGTGAAAGAGATA+AGG | + | chr7_3:72698920-72698939 | None:intergenic | 35.0% |
TAATAACCTTGGAGTTGCAA+GGG | + | chr7_3:72699241-72699260 | None:intergenic | 35.0% | |
ATAATAACCTTGGAGTTGCA+AGG | + | chr7_3:72699242-72699261 | None:intergenic | 35.0% | |
ACACACACAATTATCTTTGC+TGG | + | chr7_3:72699368-72699387 | None:intergenic | 35.0% | |
! | GTAAAGTACTACATGTTCCA+TGG | + | chr7_3:72699515-72699534 | None:intergenic | 35.0% |
! | TCATAGCTTTTGCAAAATCG+TGG | + | chr7_3:72700033-72700052 | None:intergenic | 35.0% |
!!! | AAACCACTGTAGTTTTGAAG+AGG | + | chr7_3:72700085-72700104 | None:intergenic | 35.0% |
ACAGTGGTTTACTTTGATTC+CGG | - | chr7_3:72700095-72700114 | Msa1122300:intron | 35.0% | |
! | TACATATGTGGTGAGTTTTC+CGG | + | chr7_3:72700117-72700136 | None:intergenic | 35.0% |
TACTGAAGAAAGCAAAACCT+AGG | - | chr7_3:72700188-72700207 | Msa1122300:intron | 35.0% | |
TCAATCTTGTCACAAAACCT+AGG | + | chr7_3:72700208-72700227 | None:intergenic | 35.0% | |
! | TGATTGATTTCAGACAGACA+AGG | - | chr7_3:72700271-72700290 | Msa1122300:intron | 35.0% |
GAAATAACAGTCATATCTGC+AGG | - | chr7_3:72700389-72700408 | Msa1122300:intron | 35.0% | |
TTTCAATTAGGTCGGGAATT+AGG | + | chr7_3:72700481-72700500 | None:intergenic | 35.0% | |
TTGAGGATTTCAATTAGGTC+GGG | + | chr7_3:72700488-72700507 | None:intergenic | 35.0% | |
CTTGAGGATTTCAATTAGGT+CGG | + | chr7_3:72700489-72700508 | None:intergenic | 35.0% | |
GAGACTTGAGGATTTCAATT+AGG | + | chr7_3:72700493-72700512 | None:intergenic | 35.0% | |
!!! | TTTTTAGGTGAAGAGACTTG+AGG | + | chr7_3:72700505-72700524 | None:intergenic | 35.0% |
GAATTCACTTAGGTCTTTGT+TGG | - | chr7_3:72700628-72700647 | Msa1122300:CDS | 35.0% | |
ACTGCAAATCAATCTGCATT+GGG | + | chr7_3:72700732-72700751 | None:intergenic | 35.0% | |
! | GTTTTTCGTTTATAGAGCCT+TGG | - | chr7_3:72700847-72700866 | Msa1122300:five_prime_UTR | 35.0% |
! | TGATAACCTTGTTACTTCCA+AGG | + | chr7_3:72700867-72700886 | None:intergenic | 35.0% |
TAGTAATAAGGGGAAGGAAA+GGG | + | chr7_3:72698823-72698842 | None:intergenic | 35.0% | |
TGGTGGAGTAGTAGTAATAA+GGG | + | chr7_3:72698834-72698853 | None:intergenic | 35.0% | |
! | ATGGTGGAGTAGTAGTAATA+AGG | + | chr7_3:72698835-72698854 | None:intergenic | 35.0% |
TAGAAAGCTAGTGTAGGTTA+TGG | + | chr7_3:72698854-72698873 | None:intergenic | 35.0% | |
AAGAGATAAGGAAGAGAAAG+GGG | + | chr7_3:72698908-72698927 | None:intergenic | 35.0% | |
GAAAGAGATAAGGAAGAGAA+AGG | + | chr7_3:72698910-72698929 | None:intergenic | 35.0% | |
!! | GAAGCATTGTGAAAGAGATA+AGG | + | chr7_3:72698920-72698939 | None:intergenic | 35.0% |
TAATAACCTTGGAGTTGCAA+GGG | + | chr7_3:72699241-72699260 | None:intergenic | 35.0% | |
ATAATAACCTTGGAGTTGCA+AGG | + | chr7_3:72699242-72699261 | None:intergenic | 35.0% | |
ACACACACAATTATCTTTGC+TGG | + | chr7_3:72699368-72699387 | None:intergenic | 35.0% | |
! | GTAAAGTACTACATGTTCCA+TGG | + | chr7_3:72699515-72699534 | None:intergenic | 35.0% |
! | TCATAGCTTTTGCAAAATCG+TGG | + | chr7_3:72700033-72700052 | None:intergenic | 35.0% |
!!! | AAACCACTGTAGTTTTGAAG+AGG | + | chr7_3:72700085-72700104 | None:intergenic | 35.0% |
ACAGTGGTTTACTTTGATTC+CGG | - | chr7_3:72700095-72700114 | Msa1122300:intron | 35.0% | |
! | TACATATGTGGTGAGTTTTC+CGG | + | chr7_3:72700117-72700136 | None:intergenic | 35.0% |
TACTGAAGAAAGCAAAACCT+AGG | - | chr7_3:72700188-72700207 | Msa1122300:intron | 35.0% | |
TCAATCTTGTCACAAAACCT+AGG | + | chr7_3:72700208-72700227 | None:intergenic | 35.0% | |
! | TGATTGATTTCAGACAGACA+AGG | - | chr7_3:72700271-72700290 | Msa1122300:intron | 35.0% |
GAAATAACAGTCATATCTGC+AGG | - | chr7_3:72700389-72700408 | Msa1122300:intron | 35.0% | |
TTTCAATTAGGTCGGGAATT+AGG | + | chr7_3:72700481-72700500 | None:intergenic | 35.0% | |
TTGAGGATTTCAATTAGGTC+GGG | + | chr7_3:72700488-72700507 | None:intergenic | 35.0% | |
CTTGAGGATTTCAATTAGGT+CGG | + | chr7_3:72700489-72700508 | None:intergenic | 35.0% | |
GAGACTTGAGGATTTCAATT+AGG | + | chr7_3:72700493-72700512 | None:intergenic | 35.0% | |
!!! | TTTTTAGGTGAAGAGACTTG+AGG | + | chr7_3:72700505-72700524 | None:intergenic | 35.0% |
GAATTCACTTAGGTCTTTGT+TGG | - | chr7_3:72700628-72700647 | Msa1122300:CDS | 35.0% | |
ACTGCAAATCAATCTGCATT+GGG | + | chr7_3:72700732-72700751 | None:intergenic | 35.0% | |
! | GTTTTTCGTTTATAGAGCCT+TGG | - | chr7_3:72700847-72700866 | Msa1122300:five_prime_UTR | 35.0% |
! | TGATAACCTTGTTACTTCCA+AGG | + | chr7_3:72700867-72700886 | None:intergenic | 35.0% |
GTAGTAATAAGGGGAAGGAA+AGG | + | chr7_3:72698824-72698843 | None:intergenic | 40.0% | |
GAGTAGTAGTAATAAGGGGA+AGG | + | chr7_3:72698829-72698848 | None:intergenic | 40.0% | |
GGTGGAGTAGTAGTAATAAG+GGG | + | chr7_3:72698833-72698852 | None:intergenic | 40.0% | |
AAAGCTAGTGTAGGTTATGG+TGG | + | chr7_3:72698851-72698870 | None:intergenic | 40.0% | |
AGAGATAAGGAAGAGAAAGG+GGG | + | chr7_3:72698907-72698926 | None:intergenic | 40.0% | |
ATGAAGGGTTGTTAGCAACA+AGG | + | chr7_3:72698998-72699017 | None:intergenic | 40.0% | |
! | TGTTGCATCATAGTGCTACT+AGG | + | chr7_3:72699038-72699057 | None:intergenic | 40.0% |
TTTCAGAAACTTCAAAGGGG+TGG | + | chr7_3:72699100-72699119 | None:intergenic | 40.0% | |
!! | AGCTGCTTTGAAGAATCACA+AGG | - | chr7_3:72699154-72699173 | Msa1122300:CDS | 40.0% |
TCTTATGCGTTAAGCACAAG+TGG | - | chr7_3:72699663-72699682 | Msa1122300:intron | 40.0% | |
! | AGGGAAGTCACTTAGGTTTT+AGG | + | chr7_3:72699892-72699911 | None:intergenic | 40.0% |
! | TAGCTTTTGCAAAATCGTGG+TGG | + | chr7_3:72700030-72700049 | None:intergenic | 40.0% |
!!! | GTTTTGAAGAGGCTCCTTAT+AGG | + | chr7_3:72700074-72700093 | None:intergenic | 40.0% |
!! | GACTGTTATTTCGTCCGTTT+CGG | + | chr7_3:72700381-72700400 | None:intergenic | 40.0% |
AATTAGGTCGGGAATTAGGT+CGG | + | chr7_3:72700477-72700496 | None:intergenic | 40.0% | |
AAGAACACGTAACGTTCTTG+TGG | - | chr7_3:72700556-72700575 | Msa1122300:CDS | 40.0% | |
CACTTAGGTCTTTGTTGGAT+AGG | - | chr7_3:72700633-72700652 | Msa1122300:CDS | 40.0% | |
TCTTTGTTGGATAGGTCTAG+TGG | - | chr7_3:72700641-72700660 | Msa1122300:CDS | 40.0% | |
GTTGTAACGATAGGTCGAAA+AGG | - | chr7_3:72700663-72700682 | Msa1122300:CDS | 40.0% | |
CACTGCAAATCAATCTGCAT+TGG | + | chr7_3:72700733-72700752 | None:intergenic | 40.0% | |
ATAGAGCCTTGGAAGTAACA+AGG | - | chr7_3:72700858-72700877 | Msa1122300:five_prime_UTR | 40.0% | |
GTAGTAATAAGGGGAAGGAA+AGG | + | chr7_3:72698824-72698843 | None:intergenic | 40.0% | |
GAGTAGTAGTAATAAGGGGA+AGG | + | chr7_3:72698829-72698848 | None:intergenic | 40.0% | |
GGTGGAGTAGTAGTAATAAG+GGG | + | chr7_3:72698833-72698852 | None:intergenic | 40.0% | |
AAAGCTAGTGTAGGTTATGG+TGG | + | chr7_3:72698851-72698870 | None:intergenic | 40.0% | |
AGAGATAAGGAAGAGAAAGG+GGG | + | chr7_3:72698907-72698926 | None:intergenic | 40.0% | |
ATGAAGGGTTGTTAGCAACA+AGG | + | chr7_3:72698998-72699017 | None:intergenic | 40.0% | |
! | TGTTGCATCATAGTGCTACT+AGG | + | chr7_3:72699038-72699057 | None:intergenic | 40.0% |
TTTCAGAAACTTCAAAGGGG+TGG | + | chr7_3:72699100-72699119 | None:intergenic | 40.0% | |
!! | AGCTGCTTTGAAGAATCACA+AGG | - | chr7_3:72699154-72699173 | Msa1122300:CDS | 40.0% |
TCTTATGCGTTAAGCACAAG+TGG | - | chr7_3:72699663-72699682 | Msa1122300:intron | 40.0% | |
! | AGGGAAGTCACTTAGGTTTT+AGG | + | chr7_3:72699892-72699911 | None:intergenic | 40.0% |
! | TAGCTTTTGCAAAATCGTGG+TGG | + | chr7_3:72700030-72700049 | None:intergenic | 40.0% |
!!! | GTTTTGAAGAGGCTCCTTAT+AGG | + | chr7_3:72700074-72700093 | None:intergenic | 40.0% |
!! | GACTGTTATTTCGTCCGTTT+CGG | + | chr7_3:72700381-72700400 | None:intergenic | 40.0% |
AATTAGGTCGGGAATTAGGT+CGG | + | chr7_3:72700477-72700496 | None:intergenic | 40.0% | |
AAGAACACGTAACGTTCTTG+TGG | - | chr7_3:72700556-72700575 | Msa1122300:CDS | 40.0% | |
CACTTAGGTCTTTGTTGGAT+AGG | - | chr7_3:72700633-72700652 | Msa1122300:CDS | 40.0% | |
TCTTTGTTGGATAGGTCTAG+TGG | - | chr7_3:72700641-72700660 | Msa1122300:CDS | 40.0% | |
GTTGTAACGATAGGTCGAAA+AGG | - | chr7_3:72700663-72700682 | Msa1122300:CDS | 40.0% | |
CACTGCAAATCAATCTGCAT+TGG | + | chr7_3:72700733-72700752 | None:intergenic | 40.0% | |
ATAGAGCCTTGGAAGTAACA+AGG | - | chr7_3:72700858-72700877 | Msa1122300:five_prime_UTR | 40.0% | |
AGATAAGGAAGAGAAAGGGG+GGG | + | chr7_3:72698905-72698924 | None:intergenic | 45.0% | |
GAGATAAGGAAGAGAAAGGG+GGG | + | chr7_3:72698906-72698925 | None:intergenic | 45.0% | |
AGAGCTCTATCTTGGTGAGA+GGG | + | chr7_3:72699134-72699153 | None:intergenic | 45.0% | |
TAGAGCTCTATCTTGGTGAG+AGG | + | chr7_3:72699135-72699154 | None:intergenic | 45.0% | |
AAGCAGCTAGAGCTCTATCT+TGG | + | chr7_3:72699142-72699161 | None:intergenic | 45.0% | |
AGGAAGCTGAGAAGAGAAGA+AGG | - | chr7_3:72699174-72699193 | Msa1122300:CDS | 45.0% | |
GGAAGCTGAGAAGAGAAGAA+GGG | - | chr7_3:72699175-72699194 | Msa1122300:CDS | 45.0% | |
ATGCGTTAAGCACAAGTGGT+TGG | - | chr7_3:72699667-72699686 | Msa1122300:intron | 45.0% | |
GAATGCTAGGGAAGTCACTT+AGG | + | chr7_3:72699899-72699918 | None:intergenic | 45.0% | |
GAGCCTCTTCAAAACTACAG+TGG | - | chr7_3:72700079-72700098 | Msa1122300:intron | 45.0% | |
! | GTTATTTCGTCCGTTTCGGA+TGG | + | chr7_3:72700377-72700396 | None:intergenic | 45.0% |
GAATATGAGTCTGCCTTCGT+CGG | + | chr7_3:72700426-72700445 | None:intergenic | 45.0% | |
AAAGCTGAAATGGCCACACT+TGG | - | chr7_3:72700530-72700549 | Msa1122300:CDS | 45.0% | |
GGTCTAGTGGTTGTAACGAT+AGG | - | chr7_3:72700654-72700673 | Msa1122300:CDS | 45.0% | |
AGATAAGGAAGAGAAAGGGG+GGG | + | chr7_3:72698905-72698924 | None:intergenic | 45.0% | |
GAGATAAGGAAGAGAAAGGG+GGG | + | chr7_3:72698906-72698925 | None:intergenic | 45.0% | |
AGAGCTCTATCTTGGTGAGA+GGG | + | chr7_3:72699134-72699153 | None:intergenic | 45.0% | |
TAGAGCTCTATCTTGGTGAG+AGG | + | chr7_3:72699135-72699154 | None:intergenic | 45.0% | |
AAGCAGCTAGAGCTCTATCT+TGG | + | chr7_3:72699142-72699161 | None:intergenic | 45.0% | |
AGGAAGCTGAGAAGAGAAGA+AGG | - | chr7_3:72699174-72699193 | Msa1122300:CDS | 45.0% | |
GGAAGCTGAGAAGAGAAGAA+GGG | - | chr7_3:72699175-72699194 | Msa1122300:CDS | 45.0% | |
ATGCGTTAAGCACAAGTGGT+TGG | - | chr7_3:72699667-72699686 | Msa1122300:intron | 45.0% | |
GAATGCTAGGGAAGTCACTT+AGG | + | chr7_3:72699899-72699918 | None:intergenic | 45.0% | |
GAGCCTCTTCAAAACTACAG+TGG | - | chr7_3:72700079-72700098 | Msa1122300:intron | 45.0% | |
! | GTTATTTCGTCCGTTTCGGA+TGG | + | chr7_3:72700377-72700396 | None:intergenic | 45.0% |
GAATATGAGTCTGCCTTCGT+CGG | + | chr7_3:72700426-72700445 | None:intergenic | 45.0% | |
AAAGCTGAAATGGCCACACT+TGG | - | chr7_3:72700530-72700549 | Msa1122300:CDS | 45.0% | |
GGTCTAGTGGTTGTAACGAT+AGG | - | chr7_3:72700654-72700673 | Msa1122300:CDS | 45.0% | |
! | GAAGGGTACGAAGATGGTCA+AGG | + | chr7_3:72699217-72699236 | None:intergenic | 50.0% |
! | AAGGGAGAAGGGTACGAAGA+TGG | + | chr7_3:72699223-72699242 | None:intergenic | 50.0% |
CTTGGAGTTGCAAGGGAGAA+GGG | + | chr7_3:72699234-72699253 | None:intergenic | 50.0% | |
CGAAACCGTTCCATCCGAAA+CGG | - | chr7_3:72700364-72700383 | Msa1122300:intron | 50.0% | |
TTCGTCCGTTTCGGATGGAA+CGG | + | chr7_3:72700372-72700391 | None:intergenic | 50.0% | |
ACGTGTTCTTCCTCCAAGTG+TGG | + | chr7_3:72700546-72700565 | None:intergenic | 50.0% | |
!! | ATAGGTCGAAAAGGCGTCGA+GGG | - | chr7_3:72700672-72700691 | Msa1122300:CDS | 50.0% |
! | GAAGGGTACGAAGATGGTCA+AGG | + | chr7_3:72699217-72699236 | None:intergenic | 50.0% |
! | AAGGGAGAAGGGTACGAAGA+TGG | + | chr7_3:72699223-72699242 | None:intergenic | 50.0% |
CTTGGAGTTGCAAGGGAGAA+GGG | + | chr7_3:72699234-72699253 | None:intergenic | 50.0% | |
CGAAACCGTTCCATCCGAAA+CGG | - | chr7_3:72700364-72700383 | Msa1122300:intron | 50.0% | |
TTCGTCCGTTTCGGATGGAA+CGG | + | chr7_3:72700372-72700391 | None:intergenic | 50.0% | |
ACGTGTTCTTCCTCCAAGTG+TGG | + | chr7_3:72700546-72700565 | None:intergenic | 50.0% | |
!! | ATAGGTCGAAAAGGCGTCGA+GGG | - | chr7_3:72700672-72700691 | Msa1122300:CDS | 50.0% |
CCTTGGAGTTGCAAGGGAGA+AGG | + | chr7_3:72699235-72699254 | None:intergenic | 55.0% | |
CCTTCTCCCTTGCAACTCCA+AGG | - | chr7_3:72699232-72699251 | Msa1122300:CDS | 55.0% | |
GGCAATGACATCTCCGACGA+AGG | - | chr7_3:72700410-72700429 | Msa1122300:intron | 55.0% | |
GCTGAAATGGCCACACTTGG+AGG | - | chr7_3:72700533-72700552 | Msa1122300:CDS | 55.0% | |
!! | GATAGGTCGAAAAGGCGTCG+AGG | - | chr7_3:72700671-72700690 | Msa1122300:CDS | 55.0% |
CCTTGGAGTTGCAAGGGAGA+AGG | + | chr7_3:72699235-72699254 | None:intergenic | 55.0% | |
CCTTCTCCCTTGCAACTCCA+AGG | - | chr7_3:72699232-72699251 | Msa1122300:CDS | 55.0% | |
GGCAATGACATCTCCGACGA+AGG | - | chr7_3:72700410-72700429 | Msa1122300:intron | 55.0% | |
GCTGAAATGGCCACACTTGG+AGG | - | chr7_3:72700533-72700552 | Msa1122300:CDS | 55.0% | |
!! | GATAGGTCGAAAAGGCGTCG+AGG | - | chr7_3:72700671-72700690 | Msa1122300:CDS | 55.0% |
GGGGAAGGAAAGGGAGTGAG+TGG | + | chr7_3:72698814-72698833 | None:intergenic | 60.0% | |
! | GGAAGAGAAAGGGGGGGTGT+AGG | + | chr7_3:72698899-72698918 | None:intergenic | 60.0% |
!! | GTCGAAAAGGCGTCGAGGGT+TGG | - | chr7_3:72700676-72700695 | Msa1122300:CDS | 60.0% |
GGGGAAGGAAAGGGAGTGAG+TGG | + | chr7_3:72698814-72698833 | None:intergenic | 60.0% | |
! | GGAAGAGAAAGGGGGGGTGT+AGG | + | chr7_3:72698899-72698918 | None:intergenic | 60.0% |
!! | GTCGAAAAGGCGTCGAGGGT+TGG | - | chr7_3:72700676-72700695 | Msa1122300:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 72698758 | 72701020 | 72698758 | ID=Msa1122300;Name=Msa1122300 |
chr7_3 | mRNA | 72698758 | 72701020 | 72698758 | ID=Msa1122300-mRNA-1;Parent=Msa1122300;Name=Msa1122300-mRNA-1;_AED=0.00;_eAED=0.00;_QI=175|1|1|1|1|1|2|302|251 |
chr7_3 | exon | 72698758 | 72699494 | 72698758 | ID=Msa1122300-mRNA-1:exon:18944;Parent=Msa1122300-mRNA-1 |
chr7_3 | exon | 72700525 | 72701020 | 72700525 | ID=Msa1122300-mRNA-1:exon:18943;Parent=Msa1122300-mRNA-1 |
chr7_3 | five_prime_UTR | 72700846 | 72701020 | 72700846 | ID=Msa1122300-mRNA-1:five_prime_utr;Parent=Msa1122300-mRNA-1 |
chr7_3 | CDS | 72700525 | 72700845 | 72700525 | ID=Msa1122300-mRNA-1:cds;Parent=Msa1122300-mRNA-1 |
chr7_3 | CDS | 72699060 | 72699494 | 72699060 | ID=Msa1122300-mRNA-1:cds;Parent=Msa1122300-mRNA-1 |
chr7_3 | three_prime_UTR | 72698758 | 72699059 | 72698758 | ID=Msa1122300-mRNA-1:three_prime_utr;Parent=Msa1122300-mRNA-1 |
Gene Sequence |
Protein sequence |