AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1122300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122300 MtrunA17_Chr7g0255961 98.406 251 3 1 1 251 1 250 0.0 504
Msa1122300 MtrunA17_Chr1g0198801 49.738 191 89 3 59 243 141 330 7.35e-48 161
Msa1122300 MtrunA17_Chr3g0113721 40.625 192 96 4 68 243 31 220 2.25e-41 141
Msa1122300 MtrunA17_Chr2g0325521 45.810 179 90 3 71 243 54 231 1.18e-33 122
Msa1122300 MtrunA17_Chr4g0041051 42.553 188 91 5 68 243 60 242 1.26e-28 108
Msa1122300 MtrunA17_Chr5g0412371 35.096 208 114 5 32 233 7 199 6.86e-28 105
Msa1122300 MtrunA17_Chr5g0427361 37.931 174 80 3 59 206 19 190 5.54e-23 94.0
Msa1122300 MtrunA17_Chr4g0045901 38.415 164 96 4 70 230 69 230 4.74e-22 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122300 AT2G41130.1 61.644 219 78 5 18 233 10 225 2.16e-80 242
Msa1122300 AT3G56770.1 60.825 194 62 4 69 250 38 229 2.80e-73 223
Msa1122300 AT1G68810.1 46.231 199 95 3 57 243 151 349 1.44e-46 159
Msa1122300 AT3G25710.1 58.571 140 56 1 72 211 128 265 2.71e-44 152
Msa1122300 AT2G40200.1 41.579 190 94 4 71 245 58 245 6.63e-35 125
Msa1122300 AT4G38070.1 34.254 181 103 5 26 206 50 214 1.46e-21 90.9

Find 74 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATCGTAATTAACTATT+TGG 0.156759 7_3:+72698788 None:intergenic
GACTGTTATTTCGTCCGTTT+CGG 0.283104 7_3:+72699378 None:intergenic
GAGACTTGAGGATTTCAATT+AGG 0.288498 7_3:+72699266 None:intergenic
TTTCAATTAGGTCGGGAATT+AGG 0.301702 7_3:+72699278 None:intergenic
ATGGTGGAGTAGTAGTAATA+AGG 0.320333 7_3:+72700924 None:intergenic
CAACAGATTCAGAATAATAT+TGG 0.370222 7_3:-72700814 Msa1122300:CDS
AACTACTAGTACTGATGTAT+AGG 0.381986 7_3:+72698980 None:intergenic
TGGTGGAGTAGTAGTAATAA+GGG 0.382130 7_3:+72700925 None:intergenic
GAATTCACTTAGGTCTTTGT+TGG 0.385824 7_3:-72699128 Msa1122300:CDS
TAGAAAGCTAGTGTAGGTTA+TGG 0.430337 7_3:+72700905 None:intergenic
TGTTGCATCATAGTGCTACT+AGG 0.431842 7_3:+72700721 None:intergenic
AAAGAGATAAGGAAGAGAAA+GGG 0.435396 7_3:+72700850 None:intergenic
GAAAGAGATAAGGAAGAGAA+AGG 0.446668 7_3:+72700849 None:intergenic
GCTGAAATGGCCACACTTGG+AGG 0.451338 7_3:-72699223 Msa1122300:CDS
GTCGAAAAGGCGTCGAGGGT+TGG 0.453710 7_3:-72699080 Msa1122300:CDS
GTTGAGTATTCAAAGAATGA+AGG 0.456323 7_3:+72700745 None:intergenic
CATTGGGTTAAGATAAGTTA+AGG 0.457884 7_3:+72699043 None:intergenic
CACTTAGGTCTTTGTTGGAT+AGG 0.462227 7_3:-72699123 Msa1122300:CDS
CACTGCAAATCAATCTGCAT+TGG 0.466060 7_3:+72699026 None:intergenic
AGGAAGCTGAGAAGAGAAGA+AGG 0.471315 7_3:-72700582 Msa1122300:CDS
GTAGTAATAAGGGGAAGGAA+AGG 0.472830 7_3:+72700935 None:intergenic
GGGGAAGGAAAGGGAGTGAG+TGG 0.478776 7_3:+72700945 None:intergenic
AAGCAGCTAGAGCTCTATCT+TGG 0.482896 7_3:+72700617 None:intergenic
GTTATTTCGTCCGTTTCGGA+TGG 0.483862 7_3:+72699382 None:intergenic
GTAATTTCAGAAACTTCAAA+GGG 0.483898 7_3:+72700655 None:intergenic
ACTACTAGTACTGATGTATA+GGG 0.486079 7_3:+72698981 None:intergenic
CTTGAGGATTTCAATTAGGT+CGG 0.491066 7_3:+72699270 None:intergenic
GGCAATGACATCTCCGACGA+AGG 0.495302 7_3:-72699346 Msa1122300:CDS
TTGAGGATTTCAATTAGGTC+GGG 0.495547 7_3:+72699271 None:intergenic
AGTAATTTCAGAAACTTCAA+AGG 0.496460 7_3:+72700654 None:intergenic
AAGAGATAAGGAAGAGAAAG+GGG 0.505760 7_3:+72700851 None:intergenic
TAGTAATAAGGGGAAGGAAA+GGG 0.506583 7_3:+72700936 None:intergenic
AAAGCTAGTGTAGGTTATGG+TGG 0.508254 7_3:+72700908 None:intergenic
CCTTGGAGTTGCAAGGGAGA+AGG 0.512266 7_3:+72700524 None:intergenic
AAAGCTGAAATGGCCACACT+TGG 0.515003 7_3:-72699226 Msa1122300:CDS
ACTGCAAATCAATCTGCATT+GGG 0.520969 7_3:+72699027 None:intergenic
CTTGGAGTTGCAAGGGAGAA+GGG 0.521866 7_3:+72700525 None:intergenic
AGAGATAAGGAAGAGAAAGG+GGG 0.522706 7_3:+72700852 None:intergenic
TTCGTCCGTTTCGGATGGAA+CGG 0.524569 7_3:+72699387 None:intergenic
GAGATAAGGAAGAGAAAGGG+GGG 0.530773 7_3:+72700853 None:intergenic
TGATAACCTTGTTACTTCCA+AGG 0.531796 7_3:+72698892 None:intergenic
GAAATAACAGTCATATCTGC+AGG 0.539469 7_3:-72699367 Msa1122300:CDS
GATTCAGAATAATATTGGTA+TGG 0.539541 7_3:-72700809 Msa1122300:CDS
TCTTTGTTGGATAGGTCTAG+TGG 0.542993 7_3:-72699115 Msa1122300:CDS
GAAGCATTGTGAAAGAGATA+AGG 0.544855 7_3:+72700839 None:intergenic
TTGAGTATTCAAAGAATGAA+GGG 0.546799 7_3:+72700746 None:intergenic
CCTTCTCCCTTGCAACTCCA+AGG 0.549041 7_3:-72700524 Msa1122300:intron
ATAATAACCTTGGAGTTGCA+AGG 0.549750 7_3:+72700517 None:intergenic
GGTCTAGTGGTTGTAACGAT+AGG 0.565435 7_3:-72699102 Msa1122300:CDS
GAGTAGTAGTAATAAGGGGA+AGG 0.570776 7_3:+72700930 None:intergenic
TAATAACCTTGGAGTTGCAA+GGG 0.573577 7_3:+72700518 None:intergenic
ATAGAATAGAAAGCTAGTGT+AGG 0.573634 7_3:+72700899 None:intergenic
AAGGGAGAAGGGTACGAAGA+TGG 0.575464 7_3:+72700536 None:intergenic
CGAAACCGTTCCATCCGAAA+CGG 0.575955 7_3:-72699392 Msa1122300:CDS
GAATATGAGTCTGCCTTCGT+CGG 0.576237 7_3:+72699333 None:intergenic
ATAGGTCGAAAAGGCGTCGA+GGG 0.576982 7_3:-72699084 Msa1122300:CDS
GTTGTAACGATAGGTCGAAA+AGG 0.580273 7_3:-72699093 Msa1122300:CDS
GGTGGAGTAGTAGTAATAAG+GGG 0.585789 7_3:+72700926 None:intergenic
TAGAGCTCTATCTTGGTGAG+AGG 0.587097 7_3:+72700624 None:intergenic
AATTAGGTCGGGAATTAGGT+CGG 0.587819 7_3:+72699282 None:intergenic
TTTCAGAAACTTCAAAGGGG+TGG 0.587837 7_3:+72700659 None:intergenic
AGAGCTCTATCTTGGTGAGA+GGG 0.588854 7_3:+72700625 None:intergenic
ACGTGTTCTTCCTCCAAGTG+TGG 0.600825 7_3:+72699213 None:intergenic
GGAAGCTGAGAAGAGAAGAA+GGG 0.604105 7_3:-72700581 Msa1122300:CDS
AAGAACACGTAACGTTCTTG+TGG 0.618248 7_3:-72699200 Msa1122300:CDS
AGATAAGGAAGAGAAAGGGG+GGG 0.623313 7_3:+72700854 None:intergenic
ATAGAGCCTTGGAAGTAACA+AGG 0.623435 7_3:-72698898 Msa1122300:three_prime_UTR
GAAGGGTACGAAGATGGTCA+AGG 0.633890 7_3:+72700542 None:intergenic
AGCTGCTTTGAAGAATCACA+AGG 0.645458 7_3:-72700602 Msa1122300:CDS
ATGAAGGGTTGTTAGCAACA+AGG 0.651347 7_3:+72700761 None:intergenic
ATGTATAGGGAATGAAAATG+TGG 0.657149 7_3:+72698994 None:intergenic
GATAGGTCGAAAAGGCGTCG+AGG 0.658588 7_3:-72699085 Msa1122300:CDS
TGATTGATTTCAGACAGACA+AGG 0.674472 7_3:-72699485 Msa1122300:intron
TAATTTCAGAAACTTCAAAG+GGG 0.757536 7_3:+72700656 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTTTTATACTATTTA+AGG + chr7_3:72699797-72699816 None:intergenic 10.0%
!!! GTTTTTTTTTATACTATTTA+AGG + chr7_3:72699797-72699816 None:intergenic 10.0%
!!! TAGATCCTTAATTATTTTTT+TGG - chr7_3:72699591-72699610 Msa1122300:intron 15.0%
!! AAGTTCCAAAAAAATAATTA+AGG + chr7_3:72699599-72699618 None:intergenic 15.0%
!! TTTCAATTTGCAAATAAATT+TGG + chr7_3:72699819-72699838 None:intergenic 15.0%
!!! TTATAGGTTTTTAAAAATTG+AGG + chr7_3:72700058-72700077 None:intergenic 15.0%
!!! TCAATTTTTAAAAACCTATA+AGG - chr7_3:72700057-72700076 Msa1122300:intron 15.0%
!!! TAGATCCTTAATTATTTTTT+TGG - chr7_3:72699591-72699610 Msa1122300:intron 15.0%
!! AAGTTCCAAAAAAATAATTA+AGG + chr7_3:72699599-72699618 None:intergenic 15.0%
!! TTTCAATTTGCAAATAAATT+TGG + chr7_3:72699819-72699838 None:intergenic 15.0%
!!! TTATAGGTTTTTAAAAATTG+AGG + chr7_3:72700058-72700077 None:intergenic 15.0%
!!! TCAATTTTTAAAAACCTATA+AGG - chr7_3:72700057-72700076 Msa1122300:intron 15.0%
!! AATGATGAAAATAATAACCT+TGG + chr7_3:72699252-72699271 None:intergenic 20.0%
!! TCATTGTTAATTATTTGTCT+TGG - chr7_3:72699267-72699286 Msa1122300:CDS 20.0%
!!! TTTCACTCTTTTTTTTTTGT+TGG + chr7_3:72699425-72699444 None:intergenic 20.0%
!! ATCAATCGTAATTAACTATT+TGG + chr7_3:72700971-72700990 None:intergenic 20.0%
!! AATGATGAAAATAATAACCT+TGG + chr7_3:72699252-72699271 None:intergenic 20.0%
!! TCATTGTTAATTATTTGTCT+TGG - chr7_3:72699267-72699286 Msa1122300:CDS 20.0%
!!! TTTCACTCTTTTTTTTTTGT+TGG + chr7_3:72699425-72699444 None:intergenic 20.0%
!! ATCAATCGTAATTAACTATT+TGG + chr7_3:72700971-72700990 None:intergenic 20.0%
!! AGTTTATGAGTAGAATTTTG+TGG + chr7_3:72698788-72698807 None:intergenic 25.0%
! CAACAGATTCAGAATAATAT+TGG - chr7_3:72698942-72698961 Msa1122300:three_prime_UTR 25.0%
! GATTCAGAATAATATTGGTA+TGG - chr7_3:72698947-72698966 Msa1122300:three_prime_UTR 25.0%
! TTGAGTATTCAAAGAATGAA+GGG + chr7_3:72699013-72699032 None:intergenic 25.0%
! TAATTTCAGAAACTTCAAAG+GGG + chr7_3:72699103-72699122 None:intergenic 25.0%
! GTAATTTCAGAAACTTCAAA+GGG + chr7_3:72699104-72699123 None:intergenic 25.0%
! AGTAATTTCAGAAACTTCAA+AGG + chr7_3:72699105-72699124 None:intergenic 25.0%
!! TTTTGTTCTTTTGTTCTCAA+AGG - chr7_3:72699327-72699346 Msa1122300:CDS 25.0%
! CTTAATTACTAAAGTGAGAA+AGG + chr7_3:72699489-72699508 None:intergenic 25.0%
! TTCCCAACAAAAAATATGTA+AGG - chr7_3:72699742-72699761 Msa1122300:intron 25.0%
!!! TGCCTTACATATTTTTTGTT+GGG + chr7_3:72699747-72699766 None:intergenic 25.0%
!!! TTGCCTTACATATTTTTTGT+TGG + chr7_3:72699748-72699767 None:intergenic 25.0%
! CTTAATTAATCTCATCTTGA+TGG + chr7_3:72699929-72699948 None:intergenic 25.0%
! CTAATACATGTTTACATATG+TGG + chr7_3:72700129-72700148 None:intergenic 25.0%
!! ATTTTCTTCAGAATTCACTT+AGG - chr7_3:72700618-72700637 Msa1122300:CDS 25.0%
!!! GTGTTCAGTTATTTTGTAAT+AGG - chr7_3:72700806-72700825 Msa1122300:CDS 25.0%
!! AGTTTATGAGTAGAATTTTG+TGG + chr7_3:72698788-72698807 None:intergenic 25.0%
! CAACAGATTCAGAATAATAT+TGG - chr7_3:72698942-72698961 Msa1122300:three_prime_UTR 25.0%
! GATTCAGAATAATATTGGTA+TGG - chr7_3:72698947-72698966 Msa1122300:three_prime_UTR 25.0%
! TTGAGTATTCAAAGAATGAA+GGG + chr7_3:72699013-72699032 None:intergenic 25.0%
! TAATTTCAGAAACTTCAAAG+GGG + chr7_3:72699103-72699122 None:intergenic 25.0%
! GTAATTTCAGAAACTTCAAA+GGG + chr7_3:72699104-72699123 None:intergenic 25.0%
! AGTAATTTCAGAAACTTCAA+AGG + chr7_3:72699105-72699124 None:intergenic 25.0%
!! TTTTGTTCTTTTGTTCTCAA+AGG - chr7_3:72699327-72699346 Msa1122300:CDS 25.0%
! CTTAATTACTAAAGTGAGAA+AGG + chr7_3:72699489-72699508 None:intergenic 25.0%
! TTCCCAACAAAAAATATGTA+AGG - chr7_3:72699742-72699761 Msa1122300:intron 25.0%
!!! TGCCTTACATATTTTTTGTT+GGG + chr7_3:72699747-72699766 None:intergenic 25.0%
!!! TTGCCTTACATATTTTTTGT+TGG + chr7_3:72699748-72699767 None:intergenic 25.0%
! CTTAATTAATCTCATCTTGA+TGG + chr7_3:72699929-72699948 None:intergenic 25.0%
! CTAATACATGTTTACATATG+TGG + chr7_3:72700129-72700148 None:intergenic 25.0%
!! ATTTTCTTCAGAATTCACTT+AGG - chr7_3:72700618-72700637 Msa1122300:CDS 25.0%
!!! GTGTTCAGTTATTTTGTAAT+AGG - chr7_3:72700806-72700825 Msa1122300:CDS 25.0%
! TTATGAGTAGAATTTTGTGG+TGG + chr7_3:72698785-72698804 None:intergenic 30.0%
ATAGAATAGAAAGCTAGTGT+AGG + chr7_3:72698860-72698879 None:intergenic 30.0%
AAAGAGATAAGGAAGAGAAA+GGG + chr7_3:72698909-72698928 None:intergenic 30.0%
GTTGAGTATTCAAAGAATGA+AGG + chr7_3:72699014-72699033 None:intergenic 30.0%
! CTTTAGTAATTAAGTTGCCA+TGG - chr7_3:72699495-72699514 Msa1122300:intron 30.0%
! TGTCTGAAGTAGTGTATATT+CGG - chr7_3:72699701-72699720 Msa1122300:intron 30.0%
TGCAAATTGAAAATTGAGCT+AGG - chr7_3:72699827-72699846 Msa1122300:intron 30.0%
GCAAATTGAAAATTGAGCTA+GGG - chr7_3:72699828-72699847 Msa1122300:intron 30.0%
!!! GATGGTTATTTTGAATGCTA+GGG + chr7_3:72699911-72699930 None:intergenic 30.0%
!!! TGATGGTTATTTTGAATGCT+AGG + chr7_3:72699912-72699931 None:intergenic 30.0%
TGATGAAGAAAGCAAAGTTT+AGG - chr7_3:72700151-72700170 Msa1122300:intron 30.0%
!!! TTTCAGCTTTGAGAGTTTTT+AGG + chr7_3:72700520-72700539 None:intergenic 30.0%
AAAAACTCTCAAAGCTGAAA+TGG - chr7_3:72700520-72700539 Msa1122300:intron 30.0%
CATTGGGTTAAGATAAGTTA+AGG + chr7_3:72700716-72700735 None:intergenic 30.0%
ATGTATAGGGAATGAAAATG+TGG + chr7_3:72700765-72700784 None:intergenic 30.0%
!! ACTACTAGTACTGATGTATA+GGG + chr7_3:72700778-72700797 None:intergenic 30.0%
!! AACTACTAGTACTGATGTAT+AGG + chr7_3:72700779-72700798 None:intergenic 30.0%
! TTATGAGTAGAATTTTGTGG+TGG + chr7_3:72698785-72698804 None:intergenic 30.0%
ATAGAATAGAAAGCTAGTGT+AGG + chr7_3:72698860-72698879 None:intergenic 30.0%
AAAGAGATAAGGAAGAGAAA+GGG + chr7_3:72698909-72698928 None:intergenic 30.0%
GTTGAGTATTCAAAGAATGA+AGG + chr7_3:72699014-72699033 None:intergenic 30.0%
! CTTTAGTAATTAAGTTGCCA+TGG - chr7_3:72699495-72699514 Msa1122300:intron 30.0%
! TGTCTGAAGTAGTGTATATT+CGG - chr7_3:72699701-72699720 Msa1122300:intron 30.0%
TGCAAATTGAAAATTGAGCT+AGG - chr7_3:72699827-72699846 Msa1122300:intron 30.0%
GCAAATTGAAAATTGAGCTA+GGG - chr7_3:72699828-72699847 Msa1122300:intron 30.0%
!!! GATGGTTATTTTGAATGCTA+GGG + chr7_3:72699911-72699930 None:intergenic 30.0%
!!! TGATGGTTATTTTGAATGCT+AGG + chr7_3:72699912-72699931 None:intergenic 30.0%
TGATGAAGAAAGCAAAGTTT+AGG - chr7_3:72700151-72700170 Msa1122300:intron 30.0%
!!! TTTCAGCTTTGAGAGTTTTT+AGG + chr7_3:72700520-72700539 None:intergenic 30.0%
AAAAACTCTCAAAGCTGAAA+TGG - chr7_3:72700520-72700539 Msa1122300:intron 30.0%
CATTGGGTTAAGATAAGTTA+AGG + chr7_3:72700716-72700735 None:intergenic 30.0%
ATGTATAGGGAATGAAAATG+TGG + chr7_3:72700765-72700784 None:intergenic 30.0%
!! ACTACTAGTACTGATGTATA+GGG + chr7_3:72700778-72700797 None:intergenic 30.0%
!! AACTACTAGTACTGATGTAT+AGG + chr7_3:72700779-72700798 None:intergenic 30.0%
TAGTAATAAGGGGAAGGAAA+GGG + chr7_3:72698823-72698842 None:intergenic 35.0%
TGGTGGAGTAGTAGTAATAA+GGG + chr7_3:72698834-72698853 None:intergenic 35.0%
! ATGGTGGAGTAGTAGTAATA+AGG + chr7_3:72698835-72698854 None:intergenic 35.0%
TAGAAAGCTAGTGTAGGTTA+TGG + chr7_3:72698854-72698873 None:intergenic 35.0%
AAGAGATAAGGAAGAGAAAG+GGG + chr7_3:72698908-72698927 None:intergenic 35.0%
GAAAGAGATAAGGAAGAGAA+AGG + chr7_3:72698910-72698929 None:intergenic 35.0%
!! GAAGCATTGTGAAAGAGATA+AGG + chr7_3:72698920-72698939 None:intergenic 35.0%
TAATAACCTTGGAGTTGCAA+GGG + chr7_3:72699241-72699260 None:intergenic 35.0%
ATAATAACCTTGGAGTTGCA+AGG + chr7_3:72699242-72699261 None:intergenic 35.0%
ACACACACAATTATCTTTGC+TGG + chr7_3:72699368-72699387 None:intergenic 35.0%
! GTAAAGTACTACATGTTCCA+TGG + chr7_3:72699515-72699534 None:intergenic 35.0%
! TCATAGCTTTTGCAAAATCG+TGG + chr7_3:72700033-72700052 None:intergenic 35.0%
!!! AAACCACTGTAGTTTTGAAG+AGG + chr7_3:72700085-72700104 None:intergenic 35.0%
ACAGTGGTTTACTTTGATTC+CGG - chr7_3:72700095-72700114 Msa1122300:intron 35.0%
! TACATATGTGGTGAGTTTTC+CGG + chr7_3:72700117-72700136 None:intergenic 35.0%
TACTGAAGAAAGCAAAACCT+AGG - chr7_3:72700188-72700207 Msa1122300:intron 35.0%
TCAATCTTGTCACAAAACCT+AGG + chr7_3:72700208-72700227 None:intergenic 35.0%
! TGATTGATTTCAGACAGACA+AGG - chr7_3:72700271-72700290 Msa1122300:intron 35.0%
GAAATAACAGTCATATCTGC+AGG - chr7_3:72700389-72700408 Msa1122300:intron 35.0%
TTTCAATTAGGTCGGGAATT+AGG + chr7_3:72700481-72700500 None:intergenic 35.0%
TTGAGGATTTCAATTAGGTC+GGG + chr7_3:72700488-72700507 None:intergenic 35.0%
CTTGAGGATTTCAATTAGGT+CGG + chr7_3:72700489-72700508 None:intergenic 35.0%
GAGACTTGAGGATTTCAATT+AGG + chr7_3:72700493-72700512 None:intergenic 35.0%
!!! TTTTTAGGTGAAGAGACTTG+AGG + chr7_3:72700505-72700524 None:intergenic 35.0%
GAATTCACTTAGGTCTTTGT+TGG - chr7_3:72700628-72700647 Msa1122300:CDS 35.0%
ACTGCAAATCAATCTGCATT+GGG + chr7_3:72700732-72700751 None:intergenic 35.0%
! GTTTTTCGTTTATAGAGCCT+TGG - chr7_3:72700847-72700866 Msa1122300:five_prime_UTR 35.0%
! TGATAACCTTGTTACTTCCA+AGG + chr7_3:72700867-72700886 None:intergenic 35.0%
TAGTAATAAGGGGAAGGAAA+GGG + chr7_3:72698823-72698842 None:intergenic 35.0%
TGGTGGAGTAGTAGTAATAA+GGG + chr7_3:72698834-72698853 None:intergenic 35.0%
! ATGGTGGAGTAGTAGTAATA+AGG + chr7_3:72698835-72698854 None:intergenic 35.0%
TAGAAAGCTAGTGTAGGTTA+TGG + chr7_3:72698854-72698873 None:intergenic 35.0%
AAGAGATAAGGAAGAGAAAG+GGG + chr7_3:72698908-72698927 None:intergenic 35.0%
GAAAGAGATAAGGAAGAGAA+AGG + chr7_3:72698910-72698929 None:intergenic 35.0%
!! GAAGCATTGTGAAAGAGATA+AGG + chr7_3:72698920-72698939 None:intergenic 35.0%
TAATAACCTTGGAGTTGCAA+GGG + chr7_3:72699241-72699260 None:intergenic 35.0%
ATAATAACCTTGGAGTTGCA+AGG + chr7_3:72699242-72699261 None:intergenic 35.0%
ACACACACAATTATCTTTGC+TGG + chr7_3:72699368-72699387 None:intergenic 35.0%
! GTAAAGTACTACATGTTCCA+TGG + chr7_3:72699515-72699534 None:intergenic 35.0%
! TCATAGCTTTTGCAAAATCG+TGG + chr7_3:72700033-72700052 None:intergenic 35.0%
!!! AAACCACTGTAGTTTTGAAG+AGG + chr7_3:72700085-72700104 None:intergenic 35.0%
ACAGTGGTTTACTTTGATTC+CGG - chr7_3:72700095-72700114 Msa1122300:intron 35.0%
! TACATATGTGGTGAGTTTTC+CGG + chr7_3:72700117-72700136 None:intergenic 35.0%
TACTGAAGAAAGCAAAACCT+AGG - chr7_3:72700188-72700207 Msa1122300:intron 35.0%
TCAATCTTGTCACAAAACCT+AGG + chr7_3:72700208-72700227 None:intergenic 35.0%
! TGATTGATTTCAGACAGACA+AGG - chr7_3:72700271-72700290 Msa1122300:intron 35.0%
GAAATAACAGTCATATCTGC+AGG - chr7_3:72700389-72700408 Msa1122300:intron 35.0%
TTTCAATTAGGTCGGGAATT+AGG + chr7_3:72700481-72700500 None:intergenic 35.0%
TTGAGGATTTCAATTAGGTC+GGG + chr7_3:72700488-72700507 None:intergenic 35.0%
CTTGAGGATTTCAATTAGGT+CGG + chr7_3:72700489-72700508 None:intergenic 35.0%
GAGACTTGAGGATTTCAATT+AGG + chr7_3:72700493-72700512 None:intergenic 35.0%
!!! TTTTTAGGTGAAGAGACTTG+AGG + chr7_3:72700505-72700524 None:intergenic 35.0%
GAATTCACTTAGGTCTTTGT+TGG - chr7_3:72700628-72700647 Msa1122300:CDS 35.0%
ACTGCAAATCAATCTGCATT+GGG + chr7_3:72700732-72700751 None:intergenic 35.0%
! GTTTTTCGTTTATAGAGCCT+TGG - chr7_3:72700847-72700866 Msa1122300:five_prime_UTR 35.0%
! TGATAACCTTGTTACTTCCA+AGG + chr7_3:72700867-72700886 None:intergenic 35.0%
GTAGTAATAAGGGGAAGGAA+AGG + chr7_3:72698824-72698843 None:intergenic 40.0%
GAGTAGTAGTAATAAGGGGA+AGG + chr7_3:72698829-72698848 None:intergenic 40.0%
GGTGGAGTAGTAGTAATAAG+GGG + chr7_3:72698833-72698852 None:intergenic 40.0%
AAAGCTAGTGTAGGTTATGG+TGG + chr7_3:72698851-72698870 None:intergenic 40.0%
AGAGATAAGGAAGAGAAAGG+GGG + chr7_3:72698907-72698926 None:intergenic 40.0%
ATGAAGGGTTGTTAGCAACA+AGG + chr7_3:72698998-72699017 None:intergenic 40.0%
! TGTTGCATCATAGTGCTACT+AGG + chr7_3:72699038-72699057 None:intergenic 40.0%
TTTCAGAAACTTCAAAGGGG+TGG + chr7_3:72699100-72699119 None:intergenic 40.0%
!! AGCTGCTTTGAAGAATCACA+AGG - chr7_3:72699154-72699173 Msa1122300:CDS 40.0%
TCTTATGCGTTAAGCACAAG+TGG - chr7_3:72699663-72699682 Msa1122300:intron 40.0%
! AGGGAAGTCACTTAGGTTTT+AGG + chr7_3:72699892-72699911 None:intergenic 40.0%
! TAGCTTTTGCAAAATCGTGG+TGG + chr7_3:72700030-72700049 None:intergenic 40.0%
!!! GTTTTGAAGAGGCTCCTTAT+AGG + chr7_3:72700074-72700093 None:intergenic 40.0%
!! GACTGTTATTTCGTCCGTTT+CGG + chr7_3:72700381-72700400 None:intergenic 40.0%
AATTAGGTCGGGAATTAGGT+CGG + chr7_3:72700477-72700496 None:intergenic 40.0%
AAGAACACGTAACGTTCTTG+TGG - chr7_3:72700556-72700575 Msa1122300:CDS 40.0%
CACTTAGGTCTTTGTTGGAT+AGG - chr7_3:72700633-72700652 Msa1122300:CDS 40.0%
TCTTTGTTGGATAGGTCTAG+TGG - chr7_3:72700641-72700660 Msa1122300:CDS 40.0%
GTTGTAACGATAGGTCGAAA+AGG - chr7_3:72700663-72700682 Msa1122300:CDS 40.0%
CACTGCAAATCAATCTGCAT+TGG + chr7_3:72700733-72700752 None:intergenic 40.0%
ATAGAGCCTTGGAAGTAACA+AGG - chr7_3:72700858-72700877 Msa1122300:five_prime_UTR 40.0%
GTAGTAATAAGGGGAAGGAA+AGG + chr7_3:72698824-72698843 None:intergenic 40.0%
GAGTAGTAGTAATAAGGGGA+AGG + chr7_3:72698829-72698848 None:intergenic 40.0%
GGTGGAGTAGTAGTAATAAG+GGG + chr7_3:72698833-72698852 None:intergenic 40.0%
AAAGCTAGTGTAGGTTATGG+TGG + chr7_3:72698851-72698870 None:intergenic 40.0%
AGAGATAAGGAAGAGAAAGG+GGG + chr7_3:72698907-72698926 None:intergenic 40.0%
ATGAAGGGTTGTTAGCAACA+AGG + chr7_3:72698998-72699017 None:intergenic 40.0%
! TGTTGCATCATAGTGCTACT+AGG + chr7_3:72699038-72699057 None:intergenic 40.0%
TTTCAGAAACTTCAAAGGGG+TGG + chr7_3:72699100-72699119 None:intergenic 40.0%
!! AGCTGCTTTGAAGAATCACA+AGG - chr7_3:72699154-72699173 Msa1122300:CDS 40.0%
TCTTATGCGTTAAGCACAAG+TGG - chr7_3:72699663-72699682 Msa1122300:intron 40.0%
! AGGGAAGTCACTTAGGTTTT+AGG + chr7_3:72699892-72699911 None:intergenic 40.0%
! TAGCTTTTGCAAAATCGTGG+TGG + chr7_3:72700030-72700049 None:intergenic 40.0%
!!! GTTTTGAAGAGGCTCCTTAT+AGG + chr7_3:72700074-72700093 None:intergenic 40.0%
!! GACTGTTATTTCGTCCGTTT+CGG + chr7_3:72700381-72700400 None:intergenic 40.0%
AATTAGGTCGGGAATTAGGT+CGG + chr7_3:72700477-72700496 None:intergenic 40.0%
AAGAACACGTAACGTTCTTG+TGG - chr7_3:72700556-72700575 Msa1122300:CDS 40.0%
CACTTAGGTCTTTGTTGGAT+AGG - chr7_3:72700633-72700652 Msa1122300:CDS 40.0%
TCTTTGTTGGATAGGTCTAG+TGG - chr7_3:72700641-72700660 Msa1122300:CDS 40.0%
GTTGTAACGATAGGTCGAAA+AGG - chr7_3:72700663-72700682 Msa1122300:CDS 40.0%
CACTGCAAATCAATCTGCAT+TGG + chr7_3:72700733-72700752 None:intergenic 40.0%
ATAGAGCCTTGGAAGTAACA+AGG - chr7_3:72700858-72700877 Msa1122300:five_prime_UTR 40.0%
AGATAAGGAAGAGAAAGGGG+GGG + chr7_3:72698905-72698924 None:intergenic 45.0%
GAGATAAGGAAGAGAAAGGG+GGG + chr7_3:72698906-72698925 None:intergenic 45.0%
AGAGCTCTATCTTGGTGAGA+GGG + chr7_3:72699134-72699153 None:intergenic 45.0%
TAGAGCTCTATCTTGGTGAG+AGG + chr7_3:72699135-72699154 None:intergenic 45.0%
AAGCAGCTAGAGCTCTATCT+TGG + chr7_3:72699142-72699161 None:intergenic 45.0%
AGGAAGCTGAGAAGAGAAGA+AGG - chr7_3:72699174-72699193 Msa1122300:CDS 45.0%
GGAAGCTGAGAAGAGAAGAA+GGG - chr7_3:72699175-72699194 Msa1122300:CDS 45.0%
ATGCGTTAAGCACAAGTGGT+TGG - chr7_3:72699667-72699686 Msa1122300:intron 45.0%
GAATGCTAGGGAAGTCACTT+AGG + chr7_3:72699899-72699918 None:intergenic 45.0%
GAGCCTCTTCAAAACTACAG+TGG - chr7_3:72700079-72700098 Msa1122300:intron 45.0%
! GTTATTTCGTCCGTTTCGGA+TGG + chr7_3:72700377-72700396 None:intergenic 45.0%
GAATATGAGTCTGCCTTCGT+CGG + chr7_3:72700426-72700445 None:intergenic 45.0%
AAAGCTGAAATGGCCACACT+TGG - chr7_3:72700530-72700549 Msa1122300:CDS 45.0%
GGTCTAGTGGTTGTAACGAT+AGG - chr7_3:72700654-72700673 Msa1122300:CDS 45.0%
AGATAAGGAAGAGAAAGGGG+GGG + chr7_3:72698905-72698924 None:intergenic 45.0%
GAGATAAGGAAGAGAAAGGG+GGG + chr7_3:72698906-72698925 None:intergenic 45.0%
AGAGCTCTATCTTGGTGAGA+GGG + chr7_3:72699134-72699153 None:intergenic 45.0%
TAGAGCTCTATCTTGGTGAG+AGG + chr7_3:72699135-72699154 None:intergenic 45.0%
AAGCAGCTAGAGCTCTATCT+TGG + chr7_3:72699142-72699161 None:intergenic 45.0%
AGGAAGCTGAGAAGAGAAGA+AGG - chr7_3:72699174-72699193 Msa1122300:CDS 45.0%
GGAAGCTGAGAAGAGAAGAA+GGG - chr7_3:72699175-72699194 Msa1122300:CDS 45.0%
ATGCGTTAAGCACAAGTGGT+TGG - chr7_3:72699667-72699686 Msa1122300:intron 45.0%
GAATGCTAGGGAAGTCACTT+AGG + chr7_3:72699899-72699918 None:intergenic 45.0%
GAGCCTCTTCAAAACTACAG+TGG - chr7_3:72700079-72700098 Msa1122300:intron 45.0%
! GTTATTTCGTCCGTTTCGGA+TGG + chr7_3:72700377-72700396 None:intergenic 45.0%
GAATATGAGTCTGCCTTCGT+CGG + chr7_3:72700426-72700445 None:intergenic 45.0%
AAAGCTGAAATGGCCACACT+TGG - chr7_3:72700530-72700549 Msa1122300:CDS 45.0%
GGTCTAGTGGTTGTAACGAT+AGG - chr7_3:72700654-72700673 Msa1122300:CDS 45.0%
! GAAGGGTACGAAGATGGTCA+AGG + chr7_3:72699217-72699236 None:intergenic 50.0%
! AAGGGAGAAGGGTACGAAGA+TGG + chr7_3:72699223-72699242 None:intergenic 50.0%
CTTGGAGTTGCAAGGGAGAA+GGG + chr7_3:72699234-72699253 None:intergenic 50.0%
CGAAACCGTTCCATCCGAAA+CGG - chr7_3:72700364-72700383 Msa1122300:intron 50.0%
TTCGTCCGTTTCGGATGGAA+CGG + chr7_3:72700372-72700391 None:intergenic 50.0%
ACGTGTTCTTCCTCCAAGTG+TGG + chr7_3:72700546-72700565 None:intergenic 50.0%
!! ATAGGTCGAAAAGGCGTCGA+GGG - chr7_3:72700672-72700691 Msa1122300:CDS 50.0%
! GAAGGGTACGAAGATGGTCA+AGG + chr7_3:72699217-72699236 None:intergenic 50.0%
! AAGGGAGAAGGGTACGAAGA+TGG + chr7_3:72699223-72699242 None:intergenic 50.0%
CTTGGAGTTGCAAGGGAGAA+GGG + chr7_3:72699234-72699253 None:intergenic 50.0%
CGAAACCGTTCCATCCGAAA+CGG - chr7_3:72700364-72700383 Msa1122300:intron 50.0%
TTCGTCCGTTTCGGATGGAA+CGG + chr7_3:72700372-72700391 None:intergenic 50.0%
ACGTGTTCTTCCTCCAAGTG+TGG + chr7_3:72700546-72700565 None:intergenic 50.0%
!! ATAGGTCGAAAAGGCGTCGA+GGG - chr7_3:72700672-72700691 Msa1122300:CDS 50.0%
CCTTGGAGTTGCAAGGGAGA+AGG + chr7_3:72699235-72699254 None:intergenic 55.0%
CCTTCTCCCTTGCAACTCCA+AGG - chr7_3:72699232-72699251 Msa1122300:CDS 55.0%
GGCAATGACATCTCCGACGA+AGG - chr7_3:72700410-72700429 Msa1122300:intron 55.0%
GCTGAAATGGCCACACTTGG+AGG - chr7_3:72700533-72700552 Msa1122300:CDS 55.0%
!! GATAGGTCGAAAAGGCGTCG+AGG - chr7_3:72700671-72700690 Msa1122300:CDS 55.0%
CCTTGGAGTTGCAAGGGAGA+AGG + chr7_3:72699235-72699254 None:intergenic 55.0%
CCTTCTCCCTTGCAACTCCA+AGG - chr7_3:72699232-72699251 Msa1122300:CDS 55.0%
GGCAATGACATCTCCGACGA+AGG - chr7_3:72700410-72700429 Msa1122300:intron 55.0%
GCTGAAATGGCCACACTTGG+AGG - chr7_3:72700533-72700552 Msa1122300:CDS 55.0%
!! GATAGGTCGAAAAGGCGTCG+AGG - chr7_3:72700671-72700690 Msa1122300:CDS 55.0%
GGGGAAGGAAAGGGAGTGAG+TGG + chr7_3:72698814-72698833 None:intergenic 60.0%
! GGAAGAGAAAGGGGGGGTGT+AGG + chr7_3:72698899-72698918 None:intergenic 60.0%
!! GTCGAAAAGGCGTCGAGGGT+TGG - chr7_3:72700676-72700695 Msa1122300:CDS 60.0%
GGGGAAGGAAAGGGAGTGAG+TGG + chr7_3:72698814-72698833 None:intergenic 60.0%
! GGAAGAGAAAGGGGGGGTGT+AGG + chr7_3:72698899-72698918 None:intergenic 60.0%
!! GTCGAAAAGGCGTCGAGGGT+TGG - chr7_3:72700676-72700695 Msa1122300:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 72698758 72701020 72698758 ID=Msa1122300;Name=Msa1122300
chr7_3 mRNA 72698758 72701020 72698758 ID=Msa1122300-mRNA-1;Parent=Msa1122300;Name=Msa1122300-mRNA-1;_AED=0.00;_eAED=0.00;_QI=175|1|1|1|1|1|2|302|251
chr7_3 exon 72698758 72699494 72698758 ID=Msa1122300-mRNA-1:exon:18944;Parent=Msa1122300-mRNA-1
chr7_3 exon 72700525 72701020 72700525 ID=Msa1122300-mRNA-1:exon:18943;Parent=Msa1122300-mRNA-1
chr7_3 five_prime_UTR 72700846 72701020 72700846 ID=Msa1122300-mRNA-1:five_prime_utr;Parent=Msa1122300-mRNA-1
chr7_3 CDS 72700525 72700845 72700525 ID=Msa1122300-mRNA-1:cds;Parent=Msa1122300-mRNA-1
chr7_3 CDS 72699060 72699494 72699060 ID=Msa1122300-mRNA-1:cds;Parent=Msa1122300-mRNA-1
chr7_3 three_prime_UTR 72698758 72699059 72698758 ID=Msa1122300-mRNA-1:three_prime_utr;Parent=Msa1122300-mRNA-1
Gene Sequence

>Msa1122300

ATGCTTCAGCAACAGATTCAGAATAATATTGGTATGGAAAACAACTCTGAACTCTTTCAATTCCTTGTTGCTAACAACCCTTCATTCTTTGAATACTCAACACCTAGTAGCACTATGATGCAACAAAGTTTCTGTAGTTCTTCTGATAACAACAATAACTATTACCACCCCTTTGAAGTTTCTGAAATTACTGATACACCCTCTCACCAAGATAGAGCTCTAGCTGCTTTGAAGAATCACAAGGAAGCTGAGAAGAGAAGAAGGGAAAGAATTAACTCTCACCTTGACCATCTTCGTACCCTTCTCCCTTGCAACTCCAAGACAGACAAGGCTTCACTTCTAGCAAAAGTAGTAGAACGTGTGAAAGAATTAAAGCAACAAACATCTCAAATCACACAACTCGAAACCGTTCCATCCGAAACGGACGAAATAACAGTCATATCTGCAGGCAATGACATCTCCGACGAAGGCAGACTCATATTCAAAGCTTCATTATGCTGCGAAGATCGCTCCGACCTAATTCCCGACCTAATTGAAATCCTCAAGTCTCTTCACCTAAAAACTCTCAAAGCTGAAATGGCCACACTTGGAGGAAGAACACGTAACGTTCTTGTGGTTGCTGCTGAGAAAGAACATAATAGCATTGAATCTATTCATTTTCTTCAGAATTCACTTAGGTCTTTGTTGGATAGGTCTAGTGGTTGTAACGATAGGTCGAAAAGGCGTCGAGGGTTGGATAGAAGAATGATGCCTTAA

Protein sequence

>Msa1122300

MLQQQIQNNIGMENNSELFQFLVANNPSFFEYSTPSSTMMQQSFCSSSDNNNNYYHPFEVSEITDTPSHQDRALAALKNHKEAEKRRRERINSHLDHLRTLLPCNSKTDKASLLAKVVERVKELKQQTSQITQLETVPSETDEITVISAGNDISDEGRLIFKASLCCEDRSDLIPDLIEILKSLHLKTLKAEMATLGGRTRNVLVVAAEKEHNSIESIHFLQNSLRSLLDRSSGCNDRSKRRRGLDRRMMP*