Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1122360 | XP_003607052.1 | 77.181 | 149 | 34 | 0 | 1 | 149 | 1 | 149 | 4.32e-79 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1122360 | sp|F4JZT3|ARR24_ARATH | 33.333 | 105 | 70 | 0 | 33 | 137 | 18 | 122 | 2.48e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1122360 | G7JJU6 | 77.181 | 149 | 34 | 0 | 1 | 149 | 1 | 149 | 2.06e-79 | 241 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1122360 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1122360 | MtrunA17_Chr6g0451941 | 77.181 | 149 | 34 | 0 | 1 | 149 | 1 | 149 | 3.97e-83 | 241 |
| Msa1122360 | MtrunA17_Chr7g0262351 | 30.973 | 113 | 77 | 1 | 25 | 137 | 14 | 125 | 1.43e-14 | 66.2 |
| Msa1122360 | MtrunA17_Chr8g0364781 | 33.333 | 108 | 70 | 1 | 33 | 138 | 12 | 119 | 2.49e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1122360 | AT5G26594.1 | 33.333 | 105 | 70 | 0 | 33 | 137 | 18 | 122 | 2.52e-16 | 71.2 |
Find 22 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAAACTTTCTTGGGTTAA+AGG | 0.118440 | 7_3:-72791053 | None:intergenic |
| CTTTCTTGGGTTAAAGGTTT+TGG | 0.191262 | 7_3:-72791047 | None:intergenic |
| TACCTGGGGTCCATTGATTA+TGG | 0.224477 | 7_3:-72789958 | None:intergenic |
| CTCTTTCATTCGTTTATATC+TGG | 0.238116 | 7_3:-72789712 | None:intergenic |
| TAGCACCAGTCAATAAAATA+TGG | 0.283273 | 7_3:-72789902 | None:intergenic |
| TGACCAGTTCAAAACTTTCT+TGG | 0.297085 | 7_3:-72791061 | None:intergenic |
| ATCAATGCATTGCTAATAGA+TGG | 0.376367 | 7_3:+72789792 | Msa1122360:CDS |
| GACCAGTTCAAAACTTTCTT+GGG | 0.383486 | 7_3:-72791060 | None:intergenic |
| CATCATATGCTTGAATCATT+AGG | 0.392613 | 7_3:+72789840 | Msa1122360:CDS |
| TTTGATTTGTCCATAATCAA+TGG | 0.400791 | 7_3:+72789948 | Msa1122360:CDS |
| GTGAGACAGATGCGTGCAAT+GGG | 0.473335 | 7_3:+72790936 | Msa1122360:CDS |
| AACATTAAATTCATGTGTAT+CGG | 0.499153 | 7_3:-72791094 | None:intergenic |
| TTTCATTCGTTTATATCTGG+TGG | 0.501721 | 7_3:-72789709 | None:intergenic |
| AGCAATGCATTGATGAGATA+AGG | 0.528514 | 7_3:-72789783 | None:intergenic |
| TGAAACTGCAACGAGACGCT+TGG | 0.539108 | 7_3:+72789815 | Msa1122360:CDS |
| GTCCATAATCAATGGACCCC+AGG | 0.541606 | 7_3:+72789956 | Msa1122360:CDS |
| ATTAAATTCATGTGTATCGG+AGG | 0.576741 | 7_3:-72791091 | None:intergenic |
| GTTGCACATACAATGGATGC+AGG | 0.593264 | 7_3:+72789684 | None:intergenic |
| GGTGAGACAGATGCGTGCAA+TGG | 0.623881 | 7_3:+72790935 | Msa1122360:CDS |
| GGGATACTGAGCAAGATGGT+CGG | 0.634258 | 7_3:+72790957 | Msa1122360:CDS |
| AATGGGGATACTGAGCAAGA+TGG | 0.653723 | 7_3:+72790953 | Msa1122360:CDS |
| TGAGACAGATGCGTGCAATG+GGG | 0.812421 | 7_3:+72790937 | Msa1122360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTCTTTTTTTTTTTTT+TGG | - | chr7_3:72790319-72790338 | None:intergenic | 10.0% |
| !!! | ATGTTTCTTTTTTTTTTTTT+TGG | - | chr7_3:72790319-72790338 | None:intergenic | 10.0% |
| !! | TAAAGAAATTGTTTATACCT+GGG | - | chr7_3:72789976-72789995 | None:intergenic | 20.0% |
| !! | ATAAAGAAATTGTTTATACC+TGG | - | chr7_3:72789977-72789996 | None:intergenic | 20.0% |
| !! | AAAAGTTAACGTCATATTTA+CGG | + | chr7_3:72790073-72790092 | Msa1122360:intron | 20.0% |
| !! | TAATTATTTAATAATCCCCA+TGG | + | chr7_3:72790592-72790611 | Msa1122360:intron | 20.0% |
| !! | AATTATTTAATAATCCCCAT+GGG | + | chr7_3:72790593-72790612 | Msa1122360:intron | 20.0% |
| !! | TAAAGAAATTGTTTATACCT+GGG | - | chr7_3:72789976-72789995 | None:intergenic | 20.0% |
| !! | ATAAAGAAATTGTTTATACC+TGG | - | chr7_3:72789977-72789996 | None:intergenic | 20.0% |
| !! | AAAAGTTAACGTCATATTTA+CGG | + | chr7_3:72790073-72790092 | Msa1122360:intron | 20.0% |
| !! | TAATTATTTAATAATCCCCA+TGG | + | chr7_3:72790592-72790611 | Msa1122360:intron | 20.0% |
| !! | AATTATTTAATAATCCCCAT+GGG | + | chr7_3:72790593-72790612 | Msa1122360:intron | 20.0% |
| !!! | TTTGATTTGTCCATAATCAA+TGG | + | chr7_3:72789948-72789967 | Msa1122360:CDS | 25.0% |
| ! | AAAGAAATTGTTTATACCTG+GGG | - | chr7_3:72789975-72789994 | None:intergenic | 25.0% |
| !! | TTTAAAACGAACTTTGAGTT+GGG | - | chr7_3:72790131-72790150 | None:intergenic | 25.0% |
| !!! | TTTTAAAACGAACTTTGAGT+TGG | - | chr7_3:72790132-72790151 | None:intergenic | 25.0% |
| !!! | TAGTTGATAAGCATTAAGTT+TGG | - | chr7_3:72790385-72790404 | None:intergenic | 25.0% |
| ! | AAACTTAATGCTTATCAACT+AGG | + | chr7_3:72790384-72790403 | Msa1122360:intron | 25.0% |
| ! | GTCTTTGGTTAAAATCATTT+AGG | + | chr7_3:72790664-72790683 | Msa1122360:intron | 25.0% |
| !!! | TTCATACAAGGCTTTTTTTT+TGG | + | chr7_3:72790713-72790732 | Msa1122360:intron | 25.0% |
| ! | TTATGAACATTACATGAAGT+GGG | - | chr7_3:72790844-72790863 | None:intergenic | 25.0% |
| ! | ACTACCACTAAAATAAATTG+TGG | + | chr7_3:72790895-72790914 | Msa1122360:intron | 25.0% |
| !!! | ACAACCACAATTTATTTTAG+TGG | - | chr7_3:72790902-72790921 | None:intergenic | 25.0% |
| !!! | TTTGATTTGTCCATAATCAA+TGG | + | chr7_3:72789948-72789967 | Msa1122360:CDS | 25.0% |
| ! | AAAGAAATTGTTTATACCTG+GGG | - | chr7_3:72789975-72789994 | None:intergenic | 25.0% |
| !! | TTTAAAACGAACTTTGAGTT+GGG | - | chr7_3:72790131-72790150 | None:intergenic | 25.0% |
| !!! | TTTTAAAACGAACTTTGAGT+TGG | - | chr7_3:72790132-72790151 | None:intergenic | 25.0% |
| !!! | TAGTTGATAAGCATTAAGTT+TGG | - | chr7_3:72790385-72790404 | None:intergenic | 25.0% |
| ! | AAACTTAATGCTTATCAACT+AGG | + | chr7_3:72790384-72790403 | Msa1122360:intron | 25.0% |
| ! | GTCTTTGGTTAAAATCATTT+AGG | + | chr7_3:72790664-72790683 | Msa1122360:intron | 25.0% |
| !!! | TTCATACAAGGCTTTTTTTT+TGG | + | chr7_3:72790713-72790732 | Msa1122360:intron | 25.0% |
| ! | TTATGAACATTACATGAAGT+GGG | - | chr7_3:72790844-72790863 | None:intergenic | 25.0% |
| ! | ACTACCACTAAAATAAATTG+TGG | + | chr7_3:72790895-72790914 | Msa1122360:intron | 25.0% |
| !!! | ACAACCACAATTTATTTTAG+TGG | - | chr7_3:72790902-72790921 | None:intergenic | 25.0% |
| TTTCATTCGTTTATATCTGG+TGG | - | chr7_3:72789712-72789731 | None:intergenic | 30.0% | |
| CTCTTTCATTCGTTTATATC+TGG | - | chr7_3:72789715-72789734 | None:intergenic | 30.0% | |
| ! | ATTCGCATTTTCTTTTCATC+AGG | - | chr7_3:72789738-72789757 | None:intergenic | 30.0% |
| ATCAATGCATTGCTAATAGA+TGG | + | chr7_3:72789792-72789811 | Msa1122360:CDS | 30.0% | |
| CATCATATGCTTGAATCATT+AGG | + | chr7_3:72789840-72789859 | Msa1122360:CDS | 30.0% | |
| ! | GCAATCCATATTTTATTGAC+TGG | + | chr7_3:72789897-72789916 | Msa1122360:CDS | 30.0% |
| TAGCACCAGTCAATAAAATA+TGG | - | chr7_3:72789905-72789924 | None:intergenic | 30.0% | |
| !! | AAAATGAGTTGATAGCTACA+TGG | + | chr7_3:72790038-72790057 | Msa1122360:intron | 30.0% |
| !! | TTAAAACGAACTTTGAGTTG+GGG | - | chr7_3:72790130-72790149 | None:intergenic | 30.0% |
| CATTAAGTTTGGATCTAGAT+AGG | - | chr7_3:72790374-72790393 | None:intergenic | 30.0% | |
| TTTCGCTCATGTATGATTAT+AGG | - | chr7_3:72790433-72790452 | None:intergenic | 30.0% | |
| TCTCTCATAATCTGATTGAT+TGG | - | chr7_3:72790493-72790512 | None:intergenic | 30.0% | |
| ! | TCTCTCTTTTAATCTAAGTC+TGG | + | chr7_3:72790520-72790539 | Msa1122360:intron | 30.0% |
| !!! | GCTTTTTTTTTGGCTTCAAT+TGG | + | chr7_3:72790723-72790742 | Msa1122360:intron | 30.0% |
| CCTACAATCTGATTAACTTA+AGG | - | chr7_3:72790777-72790796 | None:intergenic | 30.0% | |
| CCTTAAGTTAATCAGATTGT+AGG | + | chr7_3:72790774-72790793 | Msa1122360:intron | 30.0% | |
| GTTATGAACATTACATGAAG+TGG | - | chr7_3:72790845-72790864 | None:intergenic | 30.0% | |
| !!! | GTGGTTGTATTTTTTGTAGT+TGG | + | chr7_3:72790914-72790933 | Msa1122360:intron | 30.0% |
| TCAAAACTTTCTTGGGTTAA+AGG | - | chr7_3:72791056-72791075 | None:intergenic | 30.0% | |
| TTTCATTCGTTTATATCTGG+TGG | - | chr7_3:72789712-72789731 | None:intergenic | 30.0% | |
| CTCTTTCATTCGTTTATATC+TGG | - | chr7_3:72789715-72789734 | None:intergenic | 30.0% | |
| ! | ATTCGCATTTTCTTTTCATC+AGG | - | chr7_3:72789738-72789757 | None:intergenic | 30.0% |
| ATCAATGCATTGCTAATAGA+TGG | + | chr7_3:72789792-72789811 | Msa1122360:CDS | 30.0% | |
| CATCATATGCTTGAATCATT+AGG | + | chr7_3:72789840-72789859 | Msa1122360:CDS | 30.0% | |
| ! | GCAATCCATATTTTATTGAC+TGG | + | chr7_3:72789897-72789916 | Msa1122360:CDS | 30.0% |
| TAGCACCAGTCAATAAAATA+TGG | - | chr7_3:72789905-72789924 | None:intergenic | 30.0% | |
| !! | AAAATGAGTTGATAGCTACA+TGG | + | chr7_3:72790038-72790057 | Msa1122360:intron | 30.0% |
| !! | TTAAAACGAACTTTGAGTTG+GGG | - | chr7_3:72790130-72790149 | None:intergenic | 30.0% |
| CATTAAGTTTGGATCTAGAT+AGG | - | chr7_3:72790374-72790393 | None:intergenic | 30.0% | |
| TTTCGCTCATGTATGATTAT+AGG | - | chr7_3:72790433-72790452 | None:intergenic | 30.0% | |
| TCTCTCATAATCTGATTGAT+TGG | - | chr7_3:72790493-72790512 | None:intergenic | 30.0% | |
| ! | TCTCTCTTTTAATCTAAGTC+TGG | + | chr7_3:72790520-72790539 | Msa1122360:intron | 30.0% |
| !!! | GCTTTTTTTTTGGCTTCAAT+TGG | + | chr7_3:72790723-72790742 | Msa1122360:intron | 30.0% |
| CCTACAATCTGATTAACTTA+AGG | - | chr7_3:72790777-72790796 | None:intergenic | 30.0% | |
| CCTTAAGTTAATCAGATTGT+AGG | + | chr7_3:72790774-72790793 | Msa1122360:intron | 30.0% | |
| GTTATGAACATTACATGAAG+TGG | - | chr7_3:72790845-72790864 | None:intergenic | 30.0% | |
| !!! | GTGGTTGTATTTTTTGTAGT+TGG | + | chr7_3:72790914-72790933 | Msa1122360:intron | 30.0% |
| TCAAAACTTTCTTGGGTTAA+AGG | - | chr7_3:72791056-72791075 | None:intergenic | 30.0% | |
| ! | AGCAATGCATTGATGAGATA+AGG | - | chr7_3:72789786-72789805 | None:intergenic | 35.0% |
| AGTTAACGTCATATTTACGG+TGG | + | chr7_3:72790076-72790095 | Msa1122360:intron | 35.0% | |
| TCATATTTACGGTGGATCTT+GGG | + | chr7_3:72790084-72790103 | Msa1122360:intron | 35.0% | |
| ! | CAATACGAGGATGTTTCTAA+TGG | - | chr7_3:72790172-72790191 | None:intergenic | 35.0% |
| !!! | TTTTAAAGTGTGGAGAAGTG+GGG | - | chr7_3:72790267-72790286 | None:intergenic | 35.0% |
| !!! | CTTTTAAAGTGTGGAGAAGT+GGG | - | chr7_3:72790268-72790287 | None:intergenic | 35.0% |
| !!! | ACTTTTAAAGTGTGGAGAAG+TGG | - | chr7_3:72790269-72790288 | None:intergenic | 35.0% |
| !!! | GATCACACACTTTTAAAGTG+TGG | - | chr7_3:72790277-72790296 | None:intergenic | 35.0% |
| !!! | TTTTTGGTTCAATAGCCTAG+TGG | - | chr7_3:72790303-72790322 | None:intergenic | 35.0% |
| AAGAAACATCCTCGTATTGA+CGG | + | chr7_3:72790330-72790349 | Msa1122360:intron | 35.0% | |
| ! | TTTTAACCAAAGACCTAGAG+AGG | - | chr7_3:72790658-72790677 | None:intergenic | 35.0% |
| CCAATCTCATCATCAATTAG+TGG | - | chr7_3:72790753-72790772 | None:intergenic | 35.0% | |
| !! | CCACTAATTGATGATGAGAT+TGG | + | chr7_3:72790750-72790769 | Msa1122360:intron | 35.0% |
| ! | CTTTCTTGGGTTAAAGGTTT+TGG | - | chr7_3:72791050-72791069 | None:intergenic | 35.0% |
| !!! | AACCCAAGAAAGTTTTGAAC+TGG | + | chr7_3:72791058-72791077 | Msa1122360:CDS | 35.0% |
| GACCAGTTCAAAACTTTCTT+GGG | - | chr7_3:72791063-72791082 | None:intergenic | 35.0% | |
| TGACCAGTTCAAAACTTTCT+TGG | - | chr7_3:72791064-72791083 | None:intergenic | 35.0% | |
| !!! | GAAAGTTTTGAACTGGTCAT+TGG | + | chr7_3:72791065-72791084 | Msa1122360:CDS | 35.0% |
| ! | AGCAATGCATTGATGAGATA+AGG | - | chr7_3:72789786-72789805 | None:intergenic | 35.0% |
| AGTTAACGTCATATTTACGG+TGG | + | chr7_3:72790076-72790095 | Msa1122360:intron | 35.0% | |
| TCATATTTACGGTGGATCTT+GGG | + | chr7_3:72790084-72790103 | Msa1122360:intron | 35.0% | |
| ! | CAATACGAGGATGTTTCTAA+TGG | - | chr7_3:72790172-72790191 | None:intergenic | 35.0% |
| !!! | TTTTAAAGTGTGGAGAAGTG+GGG | - | chr7_3:72790267-72790286 | None:intergenic | 35.0% |
| !!! | CTTTTAAAGTGTGGAGAAGT+GGG | - | chr7_3:72790268-72790287 | None:intergenic | 35.0% |
| !!! | ACTTTTAAAGTGTGGAGAAG+TGG | - | chr7_3:72790269-72790288 | None:intergenic | 35.0% |
| !!! | GATCACACACTTTTAAAGTG+TGG | - | chr7_3:72790277-72790296 | None:intergenic | 35.0% |
| !!! | TTTTTGGTTCAATAGCCTAG+TGG | - | chr7_3:72790303-72790322 | None:intergenic | 35.0% |
| AAGAAACATCCTCGTATTGA+CGG | + | chr7_3:72790330-72790349 | Msa1122360:intron | 35.0% | |
| ! | TTTTAACCAAAGACCTAGAG+AGG | - | chr7_3:72790658-72790677 | None:intergenic | 35.0% |
| CCAATCTCATCATCAATTAG+TGG | - | chr7_3:72790753-72790772 | None:intergenic | 35.0% | |
| !! | CCACTAATTGATGATGAGAT+TGG | + | chr7_3:72790750-72790769 | Msa1122360:intron | 35.0% |
| ! | CTTTCTTGGGTTAAAGGTTT+TGG | - | chr7_3:72791050-72791069 | None:intergenic | 35.0% |
| !!! | AACCCAAGAAAGTTTTGAAC+TGG | + | chr7_3:72791058-72791077 | Msa1122360:CDS | 35.0% |
| GACCAGTTCAAAACTTTCTT+GGG | - | chr7_3:72791063-72791082 | None:intergenic | 35.0% | |
| TGACCAGTTCAAAACTTTCT+TGG | - | chr7_3:72791064-72791083 | None:intergenic | 35.0% | |
| !!! | GAAAGTTTTGAACTGGTCAT+TGG | + | chr7_3:72791065-72791084 | Msa1122360:CDS | 35.0% |
| GTCATATTTACGGTGGATCT+TGG | + | chr7_3:72790083-72790102 | Msa1122360:intron | 40.0% | |
| CATATTTACGGTGGATCTTG+GGG | + | chr7_3:72790085-72790104 | Msa1122360:intron | 40.0% | |
| TACCAACTGAGCTACACTTA+CGG | - | chr7_3:72790197-72790216 | None:intergenic | 40.0% | |
| TACCAGGGATAATGTTTGCA+GGG | + | chr7_3:72790219-72790238 | Msa1122360:intron | 40.0% | |
| !! | TCAACTAGGCTGATTTTCGT+TGG | + | chr7_3:72790398-72790417 | Msa1122360:intron | 40.0% |
| CTTCATAAAGTCGACGACAA+AGG | - | chr7_3:72790461-72790480 | None:intergenic | 40.0% | |
| TTTACTCCTCTCTAGGTCTT+TGG | + | chr7_3:72790649-72790668 | Msa1122360:intron | 40.0% | |
| TTAGGTGCCTACAATTCATG+TGG | + | chr7_3:72790682-72790701 | Msa1122360:intron | 40.0% | |
| ATGTCCACCACATGAATTGT+AGG | - | chr7_3:72790692-72790711 | None:intergenic | 40.0% | |
| !!! | GGTTAAAGGTTTTGGAACAC+TGG | - | chr7_3:72791042-72791061 | None:intergenic | 40.0% |
| GTCATATTTACGGTGGATCT+TGG | + | chr7_3:72790083-72790102 | Msa1122360:intron | 40.0% | |
| CATATTTACGGTGGATCTTG+GGG | + | chr7_3:72790085-72790104 | Msa1122360:intron | 40.0% | |
| TACCAACTGAGCTACACTTA+CGG | - | chr7_3:72790197-72790216 | None:intergenic | 40.0% | |
| TACCAGGGATAATGTTTGCA+GGG | + | chr7_3:72790219-72790238 | Msa1122360:intron | 40.0% | |
| !! | TCAACTAGGCTGATTTTCGT+TGG | + | chr7_3:72790398-72790417 | Msa1122360:intron | 40.0% |
| CTTCATAAAGTCGACGACAA+AGG | - | chr7_3:72790461-72790480 | None:intergenic | 40.0% | |
| TTTACTCCTCTCTAGGTCTT+TGG | + | chr7_3:72790649-72790668 | Msa1122360:intron | 40.0% | |
| TTAGGTGCCTACAATTCATG+TGG | + | chr7_3:72790682-72790701 | Msa1122360:intron | 40.0% | |
| ATGTCCACCACATGAATTGT+AGG | - | chr7_3:72790692-72790711 | None:intergenic | 40.0% | |
| !!! | GGTTAAAGGTTTTGGAACAC+TGG | - | chr7_3:72791042-72791061 | None:intergenic | 40.0% |
| ! | TACCTGGGGTCCATTGATTA+TGG | - | chr7_3:72789961-72789980 | None:intergenic | 45.0% |
| TACACTTACGGGACAATACG+AGG | - | chr7_3:72790185-72790204 | None:intergenic | 45.0% | |
| ACCAACTGAGCTACACTTAC+GGG | - | chr7_3:72790196-72790215 | None:intergenic | 45.0% | |
| CTACCAGGGATAATGTTTGC+AGG | + | chr7_3:72790218-72790237 | Msa1122360:intron | 45.0% | |
| ACCAGGGATAATGTTTGCAG+GGG | + | chr7_3:72790220-72790239 | Msa1122360:intron | 45.0% | |
| AAGTGTGTGATCTAGCCACT+AGG | + | chr7_3:72790285-72790304 | Msa1122360:intron | 45.0% | |
| ! | AAACATCCTCGTATTGACGG+TGG | + | chr7_3:72790333-72790352 | Msa1122360:intron | 45.0% |
| ! | AACATCCTCGTATTGACGGT+GGG | + | chr7_3:72790334-72790353 | Msa1122360:intron | 45.0% |
| ACACCATCAGATCAACCCAT+GGG | - | chr7_3:72790611-72790630 | None:intergenic | 45.0% | |
| TACACCATCAGATCAACCCA+TGG | - | chr7_3:72790612-72790631 | None:intergenic | 45.0% | |
| ATGGTGTAGACTTGAGACCT+CGG | + | chr7_3:72790624-72790643 | Msa1122360:intron | 45.0% | |
| CTAGAGAGGAGTAAATACCG+AGG | - | chr7_3:72790644-72790663 | None:intergenic | 45.0% | |
| CTCGGTATTTACTCCTCTCT+AGG | + | chr7_3:72790642-72790661 | Msa1122360:intron | 45.0% | |
| !! | GTGGTGGACATGTTCATACA+AGG | + | chr7_3:72790701-72790720 | Msa1122360:intron | 45.0% |
| AATGGGGATACTGAGCAAGA+TGG | + | chr7_3:72790953-72790972 | Msa1122360:CDS | 45.0% | |
| ! | TACCTGGGGTCCATTGATTA+TGG | - | chr7_3:72789961-72789980 | None:intergenic | 45.0% |
| TACACTTACGGGACAATACG+AGG | - | chr7_3:72790185-72790204 | None:intergenic | 45.0% | |
| ACCAACTGAGCTACACTTAC+GGG | - | chr7_3:72790196-72790215 | None:intergenic | 45.0% | |
| CTACCAGGGATAATGTTTGC+AGG | + | chr7_3:72790218-72790237 | Msa1122360:intron | 45.0% | |
| ACCAGGGATAATGTTTGCAG+GGG | + | chr7_3:72790220-72790239 | Msa1122360:intron | 45.0% | |
| AAGTGTGTGATCTAGCCACT+AGG | + | chr7_3:72790285-72790304 | Msa1122360:intron | 45.0% | |
| ! | AAACATCCTCGTATTGACGG+TGG | + | chr7_3:72790333-72790352 | Msa1122360:intron | 45.0% |
| ! | AACATCCTCGTATTGACGGT+GGG | + | chr7_3:72790334-72790353 | Msa1122360:intron | 45.0% |
| ACACCATCAGATCAACCCAT+GGG | - | chr7_3:72790611-72790630 | None:intergenic | 45.0% | |
| TACACCATCAGATCAACCCA+TGG | - | chr7_3:72790612-72790631 | None:intergenic | 45.0% | |
| ATGGTGTAGACTTGAGACCT+CGG | + | chr7_3:72790624-72790643 | Msa1122360:intron | 45.0% | |
| CTAGAGAGGAGTAAATACCG+AGG | - | chr7_3:72790644-72790663 | None:intergenic | 45.0% | |
| CTCGGTATTTACTCCTCTCT+AGG | + | chr7_3:72790642-72790661 | Msa1122360:intron | 45.0% | |
| !! | GTGGTGGACATGTTCATACA+AGG | + | chr7_3:72790701-72790720 | Msa1122360:intron | 45.0% |
| AATGGGGATACTGAGCAAGA+TGG | + | chr7_3:72790953-72790972 | Msa1122360:CDS | 45.0% | |
| TGAAACTGCAACGAGACGCT+TGG | + | chr7_3:72789815-72789834 | Msa1122360:CDS | 50.0% | |
| GTCCATAATCAATGGACCCC+AGG | + | chr7_3:72789956-72789975 | Msa1122360:CDS | 50.0% | |
| TCCCGTAAGTGTAGCTCAGT+TGG | + | chr7_3:72790192-72790211 | Msa1122360:intron | 50.0% | |
| !! | TAGCTCAGTTGGTAGCTACC+AGG | + | chr7_3:72790203-72790222 | Msa1122360:intron | 50.0% |
| !! | AGCTCAGTTGGTAGCTACCA+GGG | + | chr7_3:72790204-72790223 | Msa1122360:intron | 50.0% |
| GGATAATGTTTGCAGGGGCT+GGG | + | chr7_3:72790225-72790244 | Msa1122360:intron | 50.0% | |
| GATAATGTTTGCAGGGGCTG+GGG | + | chr7_3:72790226-72790245 | Msa1122360:intron | 50.0% | |
| TGTGGAGAAGTGGGGAATCT+GGG | - | chr7_3:72790259-72790278 | None:intergenic | 50.0% | |
| CAAAACCCACCGTCAATACG+AGG | - | chr7_3:72790342-72790361 | None:intergenic | 50.0% | |
| !! | ATCCCCATGGGTTGATCTGA+TGG | + | chr7_3:72790605-72790624 | Msa1122360:intron | 50.0% |
| CACCATCAGATCAACCCATG+GGG | - | chr7_3:72790610-72790629 | None:intergenic | 50.0% | |
| GGTGCCTACAATTCATGTGG+TGG | + | chr7_3:72790685-72790704 | Msa1122360:intron | 50.0% | |
| GTGAGACAGATGCGTGCAAT+GGG | + | chr7_3:72790936-72790955 | Msa1122360:CDS | 50.0% | |
| TGAGACAGATGCGTGCAATG+GGG | + | chr7_3:72790937-72790956 | Msa1122360:CDS | 50.0% | |
| GGGATACTGAGCAAGATGGT+CGG | + | chr7_3:72790957-72790976 | Msa1122360:CDS | 50.0% | |
| TGAAACTGCAACGAGACGCT+TGG | + | chr7_3:72789815-72789834 | Msa1122360:CDS | 50.0% | |
| GTCCATAATCAATGGACCCC+AGG | + | chr7_3:72789956-72789975 | Msa1122360:CDS | 50.0% | |
| TCCCGTAAGTGTAGCTCAGT+TGG | + | chr7_3:72790192-72790211 | Msa1122360:intron | 50.0% | |
| !! | TAGCTCAGTTGGTAGCTACC+AGG | + | chr7_3:72790203-72790222 | Msa1122360:intron | 50.0% |
| !! | AGCTCAGTTGGTAGCTACCA+GGG | + | chr7_3:72790204-72790223 | Msa1122360:intron | 50.0% |
| GGATAATGTTTGCAGGGGCT+GGG | + | chr7_3:72790225-72790244 | Msa1122360:intron | 50.0% | |
| GATAATGTTTGCAGGGGCTG+GGG | + | chr7_3:72790226-72790245 | Msa1122360:intron | 50.0% | |
| TGTGGAGAAGTGGGGAATCT+GGG | - | chr7_3:72790259-72790278 | None:intergenic | 50.0% | |
| CAAAACCCACCGTCAATACG+AGG | - | chr7_3:72790342-72790361 | None:intergenic | 50.0% | |
| !! | ATCCCCATGGGTTGATCTGA+TGG | + | chr7_3:72790605-72790624 | Msa1122360:intron | 50.0% |
| CACCATCAGATCAACCCATG+GGG | - | chr7_3:72790610-72790629 | None:intergenic | 50.0% | |
| GGTGCCTACAATTCATGTGG+TGG | + | chr7_3:72790685-72790704 | Msa1122360:intron | 50.0% | |
| GTGAGACAGATGCGTGCAAT+GGG | + | chr7_3:72790936-72790955 | Msa1122360:CDS | 50.0% | |
| TGAGACAGATGCGTGCAATG+GGG | + | chr7_3:72790937-72790956 | Msa1122360:CDS | 50.0% | |
| GGGATACTGAGCAAGATGGT+CGG | + | chr7_3:72790957-72790976 | Msa1122360:CDS | 50.0% | |
| GCCCCTGCAAACATTATCCC+TGG | - | chr7_3:72790224-72790243 | None:intergenic | 55.0% | |
| GGGATAATGTTTGCAGGGGC+TGG | + | chr7_3:72790224-72790243 | Msa1122360:intron | 55.0% | |
| GTGGAGAAGTGGGGAATCTG+GGG | - | chr7_3:72790258-72790277 | None:intergenic | 55.0% | |
| GTGTGGAGAAGTGGGGAATC+TGG | - | chr7_3:72790260-72790279 | None:intergenic | 55.0% | |
| GGTGAGACAGATGCGTGCAA+TGG | + | chr7_3:72790935-72790954 | Msa1122360:CDS | 55.0% | |
| GCCCCTGCAAACATTATCCC+TGG | - | chr7_3:72790224-72790243 | None:intergenic | 55.0% | |
| GGGATAATGTTTGCAGGGGC+TGG | + | chr7_3:72790224-72790243 | Msa1122360:intron | 55.0% | |
| GTGGAGAAGTGGGGAATCTG+GGG | - | chr7_3:72790258-72790277 | None:intergenic | 55.0% | |
| GTGTGGAGAAGTGGGGAATC+TGG | - | chr7_3:72790260-72790279 | None:intergenic | 55.0% | |
| GGTGAGACAGATGCGTGCAA+TGG | + | chr7_3:72790935-72790954 | Msa1122360:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 72789696 | 72791106 | 72789696 | ID=Msa1122360;Name=Msa1122360 |
| chr7_3 | mRNA | 72789696 | 72791106 | 72789696 | ID=Msa1122360-mRNA-1;Parent=Msa1122360;Name=Msa1122360-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|151 |
| chr7_3 | exon | 72789696 | 72789977 | 72789696 | ID=Msa1122360-mRNA-1:exon:18973;Parent=Msa1122360-mRNA-1 |
| chr7_3 | exon | 72790933 | 72791106 | 72790933 | ID=Msa1122360-mRNA-1:exon:18974;Parent=Msa1122360-mRNA-1 |
| chr7_3 | CDS | 72789696 | 72789977 | 72789696 | ID=Msa1122360-mRNA-1:cds;Parent=Msa1122360-mRNA-1 |
| chr7_3 | CDS | 72790933 | 72791106 | 72790933 | ID=Msa1122360-mRNA-1:cds;Parent=Msa1122360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
