Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1123060 | RHN48301.1 | 92.000 | 275 | 21 | 1 | 1 | 275 | 1 | 274 | 0.0 | 523 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1123060 | sp|Q9LSF7|Y3518_ARATH | 27.599 | 279 | 150 | 8 | 21 | 270 | 70 | 325 | 1.02e-16 | 84.3 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1123060 | A0A396H6Z6 | 92.000 | 275 | 21 | 1 | 1 | 275 | 1 | 274 | 0.0 | 523 |
Gene ID | Type | Classification |
---|---|---|
Msa1123060 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1123060 | MtrunA17_Chr7g0262311 | 92.000 | 275 | 21 | 1 | 1 | 275 | 1 | 274 | 0.0 | 523 |
Msa1123060 | MtrunA17_Chr5g0395781 | 50.352 | 284 | 115 | 7 | 1 | 275 | 1 | 267 | 7.88e-84 | 257 |
Msa1123060 | MtrunA17_Chr5g0395751 | 57.940 | 233 | 64 | 4 | 16 | 234 | 6 | 218 | 1.21e-69 | 219 |
Msa1123060 | MtrunA17_Chr5g0395741 | 53.365 | 208 | 74 | 4 | 71 | 275 | 118 | 305 | 2.43e-54 | 182 |
Msa1123060 | MtrunA17_Chr3g0097201 | 58.857 | 175 | 57 | 2 | 102 | 275 | 1 | 161 | 1.07e-52 | 173 |
Msa1123060 | MtrunA17_Chr3g0097211 | 67.816 | 87 | 25 | 1 | 6 | 89 | 2 | 88 | 6.32e-30 | 113 |
Msa1123060 | MtrunA17_Chr4g0033741 | 38.095 | 189 | 90 | 7 | 35 | 222 | 10 | 172 | 1.19e-23 | 96.7 |
Msa1123060 | MtrunA17_Chr5g0444241 | 37.584 | 149 | 88 | 3 | 129 | 272 | 186 | 334 | 3.66e-23 | 99.4 |
Msa1123060 | MtrunA17_Chr7g0262351 | 47.500 | 120 | 58 | 3 | 279 | 398 | 22 | 136 | 4.64e-23 | 94.0 |
Msa1123060 | MtrunA17_Chr8g0364781 | 45.545 | 101 | 52 | 2 | 279 | 377 | 12 | 111 | 2.59e-16 | 75.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1123060 | AT5G26594.1 | 39.167 | 120 | 69 | 2 | 279 | 398 | 18 | 133 | 5.74e-17 | 77.8 |
Msa1123060 | AT3G04280.1 | 40.909 | 110 | 61 | 2 | 268 | 376 | 14 | 120 | 6.86e-14 | 68.9 |
Msa1123060 | AT3G04280.2 | 40.909 | 110 | 61 | 2 | 268 | 376 | 14 | 120 | 6.86e-14 | 68.9 |
Msa1123060 | AT3G04280.3 | 40.909 | 110 | 61 | 2 | 268 | 376 | 14 | 120 | 6.86e-14 | 68.9 |
Msa1123060 | AT3G24850.1 | 30.556 | 180 | 102 | 6 | 115 | 285 | 183 | 348 | 2.90e-13 | 70.9 |
Msa1123060 | AT2G31720.1 | 32.099 | 162 | 104 | 3 | 156 | 314 | 137 | 295 | 7.03e-13 | 69.3 |
Msa1123060 | AT1G05920.1 | 31.746 | 126 | 78 | 4 | 156 | 273 | 171 | 296 | 1.52e-11 | 65.5 |
Msa1123060 | AT5G24050.1 | 25.610 | 246 | 158 | 6 | 35 | 271 | 100 | 329 | 3.45e-11 | 64.7 |
Find 82 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTCAACATTTGGTCATTT+AGG | 0.092697 | 7_3:-73792553 | Msa1123060:CDS |
TTTACAGTCTTATACAAAAT+TGG | 0.190742 | 7_3:-73792616 | Msa1123060:CDS |
GTGGCATTAAAAGACGATTT+TGG | 0.230260 | 7_3:+73792801 | None:intergenic |
AGTGGAGAATGACTGATAAA+TGG | 0.236879 | 7_3:-73792640 | Msa1123060:CDS |
TCCACCTTCTTCGTGGTCTT+TGG | 0.253725 | 7_3:+73793010 | None:intergenic |
ACTCAACATTTGGTCATTTA+GGG | 0.255771 | 7_3:-73792552 | Msa1123060:CDS |
TCCACCTTCCTCGTGGTCTT+TGG | 0.286800 | 7_3:+73792968 | None:intergenic |
ATCTTGTTCTTGACATTAAT+AGG | 0.287639 | 7_3:+73792896 | None:intergenic |
ATTGTGAAGCTTCTAAAATA+AGG | 0.305880 | 7_3:+73792674 | None:intergenic |
TTGACATTAATAGGTAATAT+TGG | 0.338094 | 7_3:+73792905 | None:intergenic |
CCAAGTTCGTCTTCTTTAAG+TGG | 0.388473 | 7_3:+73792782 | None:intergenic |
CGCATTGCCAAGCAAAGTTA+TGG | 0.391834 | 7_3:+73793224 | None:intergenic |
GCCCGTCATGGATGGAATTA+CGG | 0.406314 | 7_3:-73789719 | Msa1123060:intron |
CTGCATATTCATCATTAGTA+AGG | 0.410681 | 7_3:+73789423 | None:intergenic |
GTGGAGAATGACTGATAAAT+GGG | 0.417628 | 7_3:-73792639 | Msa1123060:CDS |
ACCTTCTCCATAACTTTGCT+TGG | 0.420476 | 7_3:-73793231 | Msa1123060:CDS |
AGAGATATCTTGACATTACT+TGG | 0.437895 | 7_3:-73789838 | Msa1123060:CDS |
CCACTTAAAGAAGACGAACT+TGG | 0.439642 | 7_3:-73792782 | Msa1123060:CDS |
GAATACCCTGGCCAGATTGT+TGG | 0.444431 | 7_3:-73789458 | Msa1123060:CDS |
TTGTGAAGCTTCTAAAATAA+GGG | 0.449884 | 7_3:+73792675 | None:intergenic |
AACCGTGCCAATGAGGTCTA+AGG | 0.458884 | 7_3:+73789780 | None:intergenic |
TATGCAGAATTTCGCAATGC+AGG | 0.461823 | 7_3:-73789407 | Msa1123060:CDS |
AAACATGCTGTGAGGGGAAA+TGG | 0.465819 | 7_3:-73792593 | Msa1123060:CDS |
ACAATCACTTCTAAACCAAC+CGG | 0.487692 | 7_3:+73792704 | None:intergenic |
GACGTGAGACACCAACAATC+TGG | 0.490889 | 7_3:+73789447 | None:intergenic |
GATGATCTACATCATGAAGA+TGG | 0.493143 | 7_3:-73789380 | Msa1123060:CDS |
ATTTGGTTCCACCTTCTTCG+TGG | 0.495745 | 7_3:+73793003 | None:intergenic |
CCCGCGTGGATTAAAAGTAC+TGG | 0.511605 | 7_3:-73789896 | Msa1123060:CDS |
GAGACACCAACAATCTGGCC+AGG | 0.513873 | 7_3:+73789452 | None:intergenic |
AAAGAAGCCTTAGACCTCAT+TGG | 0.516268 | 7_3:-73789787 | Msa1123060:CDS |
TCACAATGTGCTTCAAGAAG+TGG | 0.523622 | 7_3:-73792658 | Msa1123060:CDS |
AGGATCATGCCCGTCATGGA+TGG | 0.527719 | 7_3:-73789727 | Msa1123060:CDS |
AAATTTCTGTTCCTTCGTCA+TGG | 0.529500 | 7_3:+73793312 | None:intergenic |
TATCTTGACATTACTTGGTG+TGG | 0.530817 | 7_3:-73789833 | Msa1123060:CDS |
AAATTGGAAACATGCTGTGA+GGG | 0.531590 | 7_3:-73792600 | Msa1123060:CDS |
TTTCAACATATGATAGTGCA+AGG | 0.532595 | 7_3:+73789352 | None:intergenic |
AAAAGGTCATGCTAGTTGAC+AGG | 0.534345 | 7_3:+73789308 | None:intergenic |
AGGTGTCACCCATGTGATGA+AGG | 0.535873 | 7_3:-73793064 | Msa1123060:CDS |
AAGTAGCGAATACCAAGAAA+AGG | 0.536745 | 7_3:-73793084 | Msa1123060:CDS |
CATTTGGTCATTTAGGGTCA+AGG | 0.537795 | 7_3:-73792546 | Msa1123060:CDS |
TTTGCGTCAGATATCGATGA+AGG | 0.539968 | 7_3:-73792824 | Msa1123060:CDS |
GGAGAAGATCAAAGGATACA+TGG | 0.546580 | 7_3:-73793278 | Msa1123060:CDS |
GGCTAGGATCATGCCCGTCA+TGG | 0.548604 | 7_3:-73789731 | Msa1123060:CDS |
ACCGTAATTCCATCCATGAC+GGG | 0.549235 | 7_3:+73789718 | None:intergenic |
ACAGAAATTTGCTATCACTA+AGG | 0.550411 | 7_3:-73793299 | Msa1123060:CDS |
GAAACCAAAGACCACGAAGA+AGG | 0.554191 | 7_3:-73793014 | Msa1123060:CDS |
TAATGTCAAGAACAAGATCA+AGG | 0.554858 | 7_3:-73792891 | Msa1123060:CDS |
TGGATTAAAAGTACTGGTTG+TGG | 0.556379 | 7_3:-73789890 | Msa1123060:CDS |
AACAAGATCAAGGAGTTGAA+TGG | 0.557360 | 7_3:-73792881 | Msa1123060:CDS |
TCTTCTTCAGAATAAAATTG+TGG | 0.559109 | 7_3:+73793184 | None:intergenic |
AAAGGAGACTTTAGATACAA+AGG | 0.565224 | 7_3:-73792741 | Msa1123060:CDS |
GCCAAGCAAAGTTATGGAGA+AGG | 0.574243 | 7_3:+73793230 | None:intergenic |
ATTCCACAAAACACAGTGGA+AGG | 0.576751 | 7_3:-73793109 | Msa1123060:CDS |
ACCAAAGACCACGAGGAAGG+TGG | 0.579088 | 7_3:-73792969 | Msa1123060:CDS |
ATGCAGAATTTCGCAATGCA+GGG | 0.581025 | 7_3:-73789406 | Msa1123060:CDS |
TGATCCTAGCCATGAGAATG+AGG | 0.586084 | 7_3:+73789743 | None:intergenic |
ATCACTAAGGAGAAGATCAA+AGG | 0.586998 | 7_3:-73793286 | Msa1123060:CDS |
TAAATTCGACCTCATTCTCA+TGG | 0.588335 | 7_3:-73789752 | Msa1123060:CDS |
TCGACCTCATTCTCATGGCT+AGG | 0.592585 | 7_3:-73789747 | Msa1123060:CDS |
AACCGTAATTCCATCCATGA+CGG | 0.593130 | 7_3:+73789717 | None:intergenic |
GACATGCTACCTTCATCACA+TGG | 0.593230 | 7_3:+73793055 | None:intergenic |
TTAATAGGTAATATTGGCGG+AGG | 0.598936 | 7_3:+73792911 | None:intergenic |
TACGTTCAACCGTGCCAATG+AGG | 0.601575 | 7_3:+73789773 | None:intergenic |
GAAACCAAAGACCACGAGGA+AGG | 0.602167 | 7_3:-73792972 | Msa1123060:CDS |
ACCAAAGACCACGAAGAAGG+TGG | 0.606619 | 7_3:-73793011 | Msa1123060:CDS |
AGCCTTAGACCTCATTGGCA+CGG | 0.608494 | 7_3:-73789782 | Msa1123060:CDS |
ACATTAATAGGTAATATTGG+CGG | 0.614565 | 7_3:+73792908 | None:intergenic |
TGGTTTAGAAGTGATTGTGT+TGG | 0.618872 | 7_3:-73792699 | Msa1123060:CDS |
AGATGATGATCTTGTTCGAA+TGG | 0.623757 | 7_3:-73789866 | Msa1123060:CDS |
TTCAACATATGATAGTGCAA+GGG | 0.630612 | 7_3:+73789353 | None:intergenic |
TTTCGGTTCCACCTTCCTCG+TGG | 0.635344 | 7_3:+73792961 | None:intergenic |
AATTGGAAACATGCTGTGAG+GGG | 0.651158 | 7_3:-73792599 | Msa1123060:CDS |
TGAAGGTAGCATGTCTTATG+CGG | 0.655262 | 7_3:-73793047 | Msa1123060:CDS |
AGACACCAACAATCTGGCCA+GGG | 0.657108 | 7_3:+73789453 | None:intergenic |
AAATACTGAAGCCATGACGA+AGG | 0.663599 | 7_3:-73793323 | Msa1123060:CDS |
AAAATTGGAAACATGCTGTG+AGG | 0.670199 | 7_3:-73792601 | Msa1123060:CDS |
AAGTTATGGAGAAGGTTGAG+TGG | 0.683312 | 7_3:+73793238 | None:intergenic |
GAACGAAACCAAAGACCACG+AGG | 0.685629 | 7_3:-73792976 | Msa1123060:CDS |
CTGCGCGATTTAGAATACCC+TGG | 0.695519 | 7_3:-73789470 | Msa1123060:CDS |
ACATGCTACCTTCATCACAT+GGG | 0.704522 | 7_3:+73793056 | None:intergenic |
AAATATTCCACAAAACACAG+TGG | 0.735384 | 7_3:-73793113 | Msa1123060:CDS |
TATCATCACAGAGTCCCGCG+TGG | 0.741838 | 7_3:-73789910 | Msa1123060:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTATTTATCTATTATGTTT+TGG | - | chr7_3:73791271-73791290 | Msa1123060:intron | 10.0% |
!! | TGAAAAAAAAAAGTAAAAAA+AGG | + | chr7_3:73792163-73792182 | None:intergenic | 10.0% |
!!! | TTTTTCTTATCTTGTTTTTT+CGG | + | chr7_3:73789718-73789737 | None:intergenic | 15.0% |
!! | AAAACAAGATAAGAAAAATT+TGG | - | chr7_3:73789720-73789739 | Msa1123060:CDS | 15.0% |
!!! | TGTATGATTTTCTTTTTAAA+AGG | - | chr7_3:73790638-73790657 | Msa1123060:intron | 15.0% |
!! | TCAAAACTTATAGATTAAAA+AGG | + | chr7_3:73791076-73791095 | None:intergenic | 15.0% |
!!! | AAATTTGTCACAAATTTTAT+AGG | + | chr7_3:73791386-73791405 | None:intergenic | 15.0% |
!! | TTACAAATATTTCAAAATGA+AGG | + | chr7_3:73791482-73791501 | None:intergenic | 15.0% |
!!! | TTCATTTTGAAATATTTGTA+AGG | - | chr7_3:73791481-73791500 | Msa1123060:intron | 15.0% |
!! | ATTTATATCTAAGAATTAGA+GGG | + | chr7_3:73792312-73792331 | None:intergenic | 15.0% |
!! | TATTTATATCTAAGAATTAG+AGG | + | chr7_3:73792313-73792332 | None:intergenic | 15.0% |
!! | TTGACATTAATAGGTAATAT+TGG | + | chr7_3:73789757-73789776 | None:intergenic | 20.0% |
!! | TTAGATACAAAGGATAAAAA+CGG | - | chr7_3:73789928-73789947 | Msa1123060:intron | 20.0% |
!!! | TTTACAGTCTTATACAAAAT+TGG | - | chr7_3:73790043-73790062 | Msa1123060:intron | 20.0% |
!! | CTTTGTACTCAAAATTAATT+AGG | - | chr7_3:73790146-73790165 | Msa1123060:intron | 20.0% |
!! | ATATAGAAAAACAAATTCCT+AGG | + | chr7_3:73790290-73790309 | None:intergenic | 20.0% |
!! | TTGATAAAAAGACCAATATT+AGG | + | chr7_3:73790609-73790628 | None:intergenic | 20.0% |
!!! | ATTTATCTATTATGTTTTGG+TGG | - | chr7_3:73791274-73791293 | Msa1123060:intron | 20.0% |
!!! | TTTATCTATTATGTTTTGGT+GGG | - | chr7_3:73791275-73791294 | Msa1123060:intron | 20.0% |
!! | AATATTTCAAAATGAAGGTA+CGG | + | chr7_3:73791477-73791496 | None:intergenic | 20.0% |
!!! | TATTTTATGGACTAACAATT+TGG | - | chr7_3:73792037-73792056 | Msa1123060:intron | 20.0% |
!! | ATAGAAAATCAAGATTGAAA+AGG | + | chr7_3:73792678-73792697 | None:intergenic | 20.0% |
!! | TAATTACATACATACATACA+CGG | - | chr7_3:73792976-73792995 | Msa1123060:CDS | 20.0% |
!!! | ATTGCTTTAAACTAATTCAT+GGG | + | chr7_3:73793013-73793032 | None:intergenic | 20.0% |
!!! | AATTGCTTTAAACTAATTCA+TGG | + | chr7_3:73793014-73793033 | None:intergenic | 20.0% |
!! | ATTATGAATGATTATATGCT+AGG | + | chr7_3:73793118-73793137 | None:intergenic | 20.0% |
!!! | TGTTGAAACTAATTTTGAAA+AGG | - | chr7_3:73793322-73793341 | Msa1123060:CDS | 20.0% |
!!! | GTTGAAACTAATTTTGAAAA+GGG | - | chr7_3:73793323-73793342 | Msa1123060:CDS | 20.0% |
! | ATACATGGAAAAAGCAAAAA+CGG | - | chr7_3:73789396-73789415 | Msa1123060:CDS | 25.0% |
! | TCTTCTTCAGAATAAAATTG+TGG | + | chr7_3:73789478-73789497 | None:intergenic | 25.0% |
!!! | TTTGGTTTCGTTCTTTTATT+TGG | + | chr7_3:73789676-73789695 | None:intergenic | 25.0% |
! | ACATTAATAGGTAATATTGG+CGG | + | chr7_3:73789754-73789773 | None:intergenic | 25.0% |
! | ATCTTGTTCTTGACATTAAT+AGG | + | chr7_3:73789766-73789785 | None:intergenic | 25.0% |
!!! | TTGTGAAGCTTCTAAAATAA+GGG | + | chr7_3:73789987-73790006 | None:intergenic | 25.0% |
!!! | ATTGTGAAGCTTCTAAAATA+AGG | + | chr7_3:73789988-73790007 | None:intergenic | 25.0% |
!!! | CAAAACACCAAACTTTTTTA+AGG | - | chr7_3:73790452-73790471 | Msa1123060:intron | 25.0% |
! | GAAAGATCCTTAAAAAAGTT+TGG | + | chr7_3:73790462-73790481 | None:intergenic | 25.0% |
!! | GGACAAAATATTTTCTTACT+AGG | - | chr7_3:73790559-73790578 | Msa1123060:intron | 25.0% |
! | TAGCAGGAAGAATTATTATA+TGG | - | chr7_3:73790920-73790939 | Msa1123060:intron | 25.0% |
!! | ATTATTTTCCTTGATCATGT+TGG | - | chr7_3:73791049-73791068 | Msa1123060:intron | 25.0% |
! | GTCTGTGATAAAATCATTTA+TGG | - | chr7_3:73791141-73791160 | Msa1123060:intron | 25.0% |
!! | TATTTGAAGTCTTAAACTAG+AGG | + | chr7_3:73791753-73791772 | None:intergenic | 25.0% |
! | ATAGAGCACAGTTTAAATTT+CGG | + | chr7_3:73791964-73791983 | None:intergenic | 25.0% |
!! | TTAGGAAAGTAAGAATTTTG+AGG | + | chr7_3:73792066-73792085 | None:intergenic | 25.0% |
! | ATTAGAGGGTAAATTTAGAT+AGG | + | chr7_3:73792298-73792317 | None:intergenic | 25.0% |
! | ATTACAAGATTTCAAGATGA+TGG | + | chr7_3:73792452-73792471 | None:intergenic | 25.0% |
! | GTATCAAGATAAAGATATAG+AGG | + | chr7_3:73792479-73792498 | None:intergenic | 25.0% |
! | ATCAAGATTGAAAAGGAAAA+TGG | + | chr7_3:73792671-73792690 | None:intergenic | 25.0% |
! | AAACAGAACTGTAGTAATTA+AGG | - | chr7_3:73792701-73792720 | Msa1123060:CDS | 25.0% |
!! | ACAGAAATTTGCTATCACTA+AGG | - | chr7_3:73789360-73789379 | Msa1123060:CDS | 30.0% |
!!! | GTGGAATATTTTGAGTTTCT+TGG | + | chr7_3:73789537-73789556 | None:intergenic | 30.0% |
AAATATTCCACAAAACACAG+TGG | - | chr7_3:73789546-73789565 | Msa1123060:intron | 30.0% | |
TAATGTCAAGAACAAGATCA+AGG | - | chr7_3:73789768-73789787 | Msa1123060:CDS | 30.0% | |
AAAGGAGACTTTAGATACAA+AGG | - | chr7_3:73789918-73789937 | Msa1123060:intron | 30.0% | |
AAAGGATAAAAACGGTAAAC+CGG | - | chr7_3:73789936-73789955 | Msa1123060:intron | 30.0% | |
TAGGTCAAAAACTCAACATT+TGG | - | chr7_3:73790097-73790116 | Msa1123060:intron | 30.0% | |
AACTCAACATTTGGTCATTT+AGG | - | chr7_3:73790106-73790125 | Msa1123060:intron | 30.0% | |
ACTCAACATTTGGTCATTTA+GGG | - | chr7_3:73790107-73790126 | Msa1123060:intron | 30.0% | |
TACTTCTCTGTATCAATGTA+TGG | - | chr7_3:73790392-73790411 | Msa1123060:intron | 30.0% | |
TTTCCCTTTATGCCTAATAT+TGG | - | chr7_3:73790594-73790613 | Msa1123060:intron | 30.0% | |
AGACCAATATTAGGCATAAA+GGG | + | chr7_3:73790600-73790619 | None:intergenic | 30.0% | |
AAGACCAATATTAGGCATAA+AGG | + | chr7_3:73790601-73790620 | None:intergenic | 30.0% | |
TTATAGCACACTCAATAAAC+AGG | + | chr7_3:73790746-73790765 | None:intergenic | 30.0% | |
! | TATGGTCTTCAATTTGCTTA+TGG | - | chr7_3:73790938-73790957 | Msa1123060:intron | 30.0% |
AAATAATGTAGAGTCACCTA+AGG | + | chr7_3:73791036-73791055 | None:intergenic | 30.0% | |
AACTTAGTCTCATACATTCA+AGG | + | chr7_3:73791218-73791237 | None:intergenic | 30.0% | |
AGTCTCAAAGATTACGAATT+TGG | + | chr7_3:73791350-73791369 | None:intergenic | 30.0% | |
! | TTGAGCTGATTCAATTTGAT+TGG | - | chr7_3:73791419-73791438 | Msa1123060:intron | 30.0% |
! | TAACCATTAGCTTAAATGCT+TGG | + | chr7_3:73791452-73791471 | None:intergenic | 30.0% |
ACATAATCAAAATCACAGCT+AGG | + | chr7_3:73791512-73791531 | None:intergenic | 30.0% | |
AAAACCTTGCATATGATAGA+AGG | + | chr7_3:73791550-73791569 | None:intergenic | 30.0% | |
! | AACAACTTACCTTTTTGTTG+CGG | + | chr7_3:73791601-73791620 | None:intergenic | 30.0% |
ACTTGTATACTCAATGTTGT+CGG | + | chr7_3:73791987-73792006 | None:intergenic | 30.0% | |
!!! | CAACTGTGTGACTTATTTTA+TGG | - | chr7_3:73792024-73792043 | Msa1123060:intron | 30.0% |
TTCCTAACTTCAAACTTAGT+TGG | - | chr7_3:73792079-73792098 | Msa1123060:intron | 30.0% | |
! | TACCAACTAAGTTTGAAGTT+AGG | + | chr7_3:73792084-73792103 | None:intergenic | 30.0% |
! | TTGAAGTTCCTCTATGATTT+TGG | - | chr7_3:73792121-73792140 | Msa1123060:intron | 30.0% |
AACTGTTTCCAAAATCATAG+AGG | + | chr7_3:73792132-73792151 | None:intergenic | 30.0% | |
!!! | AGTTAGTTGGTTATTTTGGT+TGG | + | chr7_3:73792198-73792217 | None:intergenic | 30.0% |
! | AGTCAGTTAGTTGGTTATTT+TGG | + | chr7_3:73792202-73792221 | None:intergenic | 30.0% |
AATAAAGTGAGTCAGTTAGT+TGG | + | chr7_3:73792211-73792230 | None:intergenic | 30.0% | |
! | GATAGGTAGAAATTGACTTT+GGG | + | chr7_3:73792281-73792300 | None:intergenic | 30.0% |
! | AGATAGGTAGAAATTGACTT+TGG | + | chr7_3:73792282-73792301 | None:intergenic | 30.0% |
AGAACAAACTCTTATTCTGT+GGG | + | chr7_3:73792404-73792423 | None:intergenic | 30.0% | |
CTGTAGTAATTAAGGCATAA+TGG | - | chr7_3:73792709-73792728 | Msa1123060:CDS | 30.0% | |
AGAGATATCTTGACATTACT+TGG | - | chr7_3:73792821-73792840 | Msa1123060:CDS | 30.0% | |
ATGAACAGAAAGAAAATGCA+TGG | - | chr7_3:73793076-73793095 | Msa1123060:CDS | 30.0% | |
TGAACAGAAAGAAAATGCAT+GGG | - | chr7_3:73793077-73793096 | Msa1123060:CDS | 30.0% | |
CTGCATATTCATCATTAGTA+AGG | + | chr7_3:73793239-73793258 | None:intergenic | 30.0% | |
! | TTCAACATATGATAGTGCAA+GGG | + | chr7_3:73793309-73793328 | None:intergenic | 30.0% |
! | TTTCAACATATGATAGTGCA+AGG | + | chr7_3:73793310-73793329 | None:intergenic | 30.0% |
AAATTTCTGTTCCTTCGTCA+TGG | + | chr7_3:73789350-73789369 | None:intergenic | 35.0% | |
ATCACTAAGGAGAAGATCAA+AGG | - | chr7_3:73789373-73789392 | Msa1123060:CDS | 35.0% | |
AAGTAGCGAATACCAAGAAA+AGG | - | chr7_3:73789575-73789594 | Msa1123060:intron | 35.0% | |
TTAATAGGTAATATTGGCGG+AGG | + | chr7_3:73789751-73789770 | None:intergenic | 35.0% | |
AACAAGATCAAGGAGTTGAA+TGG | - | chr7_3:73789778-73789797 | Msa1123060:CDS | 35.0% | |
! | GTGGCATTAAAAGACGATTT+TGG | + | chr7_3:73789861-73789880 | None:intergenic | 35.0% |
! | TTTTCTCACCAAGACAGAAA+AGG | - | chr7_3:73789900-73789919 | Msa1123060:CDS | 35.0% |
! | TAAAGTCTCCTTTTCTGTCT+TGG | + | chr7_3:73789911-73789930 | None:intergenic | 35.0% |
ACAATCACTTCTAAACCAAC+CGG | + | chr7_3:73789958-73789977 | None:intergenic | 35.0% | |
TGGTTTAGAAGTGATTGTGT+TGG | - | chr7_3:73789960-73789979 | Msa1123060:intron | 35.0% | |
AGTGGAGAATGACTGATAAA+TGG | - | chr7_3:73790019-73790038 | Msa1123060:intron | 35.0% | |
GTGGAGAATGACTGATAAAT+GGG | - | chr7_3:73790020-73790039 | Msa1123060:intron | 35.0% | |
AAAATTGGAAACATGCTGTG+AGG | - | chr7_3:73790058-73790077 | Msa1123060:intron | 35.0% | |
AAATTGGAAACATGCTGTGA+GGG | - | chr7_3:73790059-73790078 | Msa1123060:intron | 35.0% | |
!!! | AGGGGAAATGGTTTTGAAAT+AGG | - | chr7_3:73790078-73790097 | Msa1123060:intron | 35.0% |
! | GTACTTTGTTTATGCGTTTC+TGG | - | chr7_3:73790210-73790229 | Msa1123060:intron | 35.0% |
! | CAGTTTTTGCTCTCTTTCAT+TGG | - | chr7_3:73790314-73790333 | Msa1123060:intron | 35.0% |
! | TAAGGATCTTTCCTTTTGTG+AGG | - | chr7_3:73790470-73790489 | Msa1123060:intron | 35.0% |
ATGCAATCAAACCTCACAAA+AGG | + | chr7_3:73790484-73790503 | None:intergenic | 35.0% | |
ATCAGTTCAGAATCTTTACC+TGG | - | chr7_3:73790516-73790535 | Msa1123060:intron | 35.0% | |
TAGTATGTGTCAAGTTCTGT+TGG | - | chr7_3:73790692-73790711 | Msa1123060:intron | 35.0% | |
AATCTCCAGTTTCATATGCA+GGG | - | chr7_3:73790872-73790891 | Msa1123060:intron | 35.0% | |
! | GACAACTTGTTCTAAGTAGT+TGG | - | chr7_3:73790960-73790979 | Msa1123060:intron | 35.0% |
CAATTTGACTATGACACCTT+AGG | - | chr7_3:73791017-73791036 | Msa1123060:intron | 35.0% | |
AAAAAGGACCAACATGATCA+AGG | + | chr7_3:73791060-73791079 | None:intergenic | 35.0% | |
! | TTTTCTCAAAACATTCGCAG+TGG | - | chr7_3:73791166-73791185 | Msa1123060:intron | 35.0% |
AGTCTCATACATTCAAGGAT+GGG | + | chr7_3:73791213-73791232 | None:intergenic | 35.0% | |
TAGTCTCATACATTCAAGGA+TGG | + | chr7_3:73791214-73791233 | None:intergenic | 35.0% | |
TTTGGTGGGATATAAGTGTT+TGG | - | chr7_3:73791289-73791308 | Msa1123060:intron | 35.0% | |
! | CATTGACACAAAGACGATTT+TGG | + | chr7_3:73791320-73791339 | None:intergenic | 35.0% |
ATCGTCTTTGTGTCAATGTT+AGG | - | chr7_3:73791322-73791341 | Msa1123060:intron | 35.0% | |
TCGTCTTTGTGTCAATGTTA+GGG | - | chr7_3:73791323-73791342 | Msa1123060:intron | 35.0% | |
TTGCCAAGCATTTAAGCTAA+TGG | - | chr7_3:73791446-73791465 | Msa1123060:intron | 35.0% | |
ATGATAGAAGGAACATGGAA+TGG | + | chr7_3:73791538-73791557 | None:intergenic | 35.0% | |
TGCATATGATAGAAGGAACA+TGG | + | chr7_3:73791543-73791562 | None:intergenic | 35.0% | |
TGTTCCTTCTATCATATGCA+AGG | - | chr7_3:73791543-73791562 | Msa1123060:intron | 35.0% | |
! | TTTTGTTGCGGCATTTTTCT+CGG | + | chr7_3:73791589-73791608 | None:intergenic | 35.0% |
AGAAAAATGCCGCAACAAAA+AGG | - | chr7_3:73791589-73791608 | Msa1123060:intron | 35.0% | |
AAACTAGAGGAAGAGTCTAA+AGG | + | chr7_3:73791740-73791759 | None:intergenic | 35.0% | |
GAGAACAAACTCTTATTCTG+TGG | + | chr7_3:73792405-73792424 | None:intergenic | 35.0% | |
! | ATAAGAGTTTGTTCTCCACA+AGG | - | chr7_3:73792409-73792428 | Msa1123060:intron | 35.0% |
GAAAGAACTCTTGATTACGT+GGG | + | chr7_3:73792573-73792592 | None:intergenic | 35.0% | |
AGAAAGAACTCTTGATTACG+TGG | + | chr7_3:73792574-73792593 | None:intergenic | 35.0% | |
!! | TGGATTAAAAGTACTGGTTG+TGG | - | chr7_3:73792769-73792788 | Msa1123060:CDS | 35.0% |
AGATGATGATCTTGTTCGAA+TGG | - | chr7_3:73792793-73792812 | Msa1123060:CDS | 35.0% | |
! | TATCTTGACATTACTTGGTG+TGG | - | chr7_3:73792826-73792845 | Msa1123060:CDS | 35.0% |
TAAATTCGACCTCATTCTCA+TGG | - | chr7_3:73792907-73792926 | Msa1123060:CDS | 35.0% | |
GAACAGAAAGAAAATGCATG+GGG | - | chr7_3:73793078-73793097 | Msa1123060:CDS | 35.0% | |
GATGATCTACATCATGAAGA+TGG | - | chr7_3:73793279-73793298 | Msa1123060:CDS | 35.0% | |
AAATACTGAAGCCATGACGA+AGG | - | chr7_3:73789336-73789355 | Msa1123060:CDS | 40.0% | |
GGAGAAGATCAAAGGATACA+TGG | - | chr7_3:73789381-73789400 | Msa1123060:CDS | 40.0% | |
AAGTTATGGAGAAGGTTGAG+TGG | + | chr7_3:73789424-73789443 | None:intergenic | 40.0% | |
ACCTTCTCCATAACTTTGCT+TGG | - | chr7_3:73789428-73789447 | Msa1123060:CDS | 40.0% | |
ATTCCACAAAACACAGTGGA+AGG | - | chr7_3:73789550-73789569 | Msa1123060:intron | 40.0% | |
ACATGCTACCTTCATCACAT+GGG | + | chr7_3:73789606-73789625 | None:intergenic | 40.0% | |
TGAAGGTAGCATGTCTTATG+CGG | - | chr7_3:73789612-73789631 | Msa1123060:intron | 40.0% | |
TTTGCGTCAGATATCGATGA+AGG | - | chr7_3:73789835-73789854 | Msa1123060:CDS | 40.0% | |
CCAAGTTCGTCTTCTTTAAG+TGG | + | chr7_3:73789880-73789899 | None:intergenic | 40.0% | |
CCACTTAAAGAAGACGAACT+TGG | - | chr7_3:73789877-73789896 | Msa1123060:CDS | 40.0% | |
GATAAAAACGGTAAACCGGT+TGG | - | chr7_3:73789940-73789959 | Msa1123060:intron | 40.0% | |
TCACAATGTGCTTCAAGAAG+TGG | - | chr7_3:73790001-73790020 | Msa1123060:intron | 40.0% | |
AATTGGAAACATGCTGTGAG+GGG | - | chr7_3:73790060-73790079 | Msa1123060:intron | 40.0% | |
! | CATTTGGTCATTTAGGGTCA+AGG | - | chr7_3:73790113-73790132 | Msa1123060:intron | 40.0% |
!! | TGTTTATGCGTTTCTGGCTT+TGG | - | chr7_3:73790216-73790235 | Msa1123060:intron | 40.0% |
! | AGTCTAGAACTTGTGTTACC+AGG | + | chr7_3:73790537-73790556 | None:intergenic | 40.0% |
!! | GTAACACAAGTTCTAGACTC+TGG | - | chr7_3:73790538-73790557 | Msa1123060:intron | 40.0% |
AGCACACTCAATAAACAGGA+TGG | + | chr7_3:73790742-73790761 | None:intergenic | 40.0% | |
GATTCTCTTGCAACTACTTC+AGG | + | chr7_3:73790856-73790875 | None:intergenic | 40.0% | |
GAATCTCCAGTTTCATATGC+AGG | - | chr7_3:73790871-73790890 | Msa1123060:intron | 40.0% | |
ATCTCCAGTTTCATATGCAG+GGG | - | chr7_3:73790873-73790892 | Msa1123060:intron | 40.0% | |
ACTATTGAAGTTGCTGCTAG+TGG | + | chr7_3:73790901-73790920 | None:intergenic | 40.0% | |
TCATACATTCAAGGATGGGA+AGG | + | chr7_3:73791209-73791228 | None:intergenic | 40.0% | |
! | TGACACAAAGACGATTTTGG+TGG | + | chr7_3:73791317-73791336 | None:intergenic | 40.0% |
! | CATTTTTCTCGGTAATTGGC+TGG | + | chr7_3:73791578-73791597 | None:intergenic | 40.0% |
GCTGTAAAAATGGGGGAAAA+CGG | + | chr7_3:73791625-73791644 | None:intergenic | 40.0% | |
TTTCGTCGCGCTGTAAAAAT+GGG | + | chr7_3:73791634-73791653 | None:intergenic | 40.0% | |
ATTTCGTCGCGCTGTAAAAA+TGG | + | chr7_3:73791635-73791654 | None:intergenic | 40.0% | |
! | CGAAATTTTATACGCGATCG+CGG | - | chr7_3:73791926-73791945 | Msa1123060:intron | 40.0% |
TTAAATTTCGGTCCCAGTCA+AGG | + | chr7_3:73791952-73791971 | None:intergenic | 40.0% | |
GAGTTCTTTCTTTCTCCACA+AGG | - | chr7_3:73792583-73792602 | Msa1123060:CDS | 40.0% | |
! | ACCAGTACTTTTAATCCACG+CGG | + | chr7_3:73792767-73792786 | None:intergenic | 40.0% |
GAAACTCACGCAGTCAAAAA+TGG | - | chr7_3:73792848-73792867 | Msa1123060:CDS | 40.0% | |
AAAGAAGCCTTAGACCTCAT+TGG | - | chr7_3:73792872-73792891 | Msa1123060:CDS | 40.0% | |
AACCGTAATTCCATCCATGA+CGG | + | chr7_3:73792945-73792964 | None:intergenic | 40.0% | |
TATGCAGAATTTCGCAATGC+AGG | - | chr7_3:73793252-73793271 | Msa1123060:CDS | 40.0% | |
ATGCAGAATTTCGCAATGCA+GGG | - | chr7_3:73793253-73793272 | Msa1123060:CDS | 40.0% | |
GCCAAGCAAAGTTATGGAGA+AGG | + | chr7_3:73789432-73789451 | None:intergenic | 45.0% | |
CGCATTGCCAAGCAAAGTTA+TGG | + | chr7_3:73789438-73789457 | None:intergenic | 45.0% | |
! | TCTCCTTCCACTGTGTTTTG+TGG | + | chr7_3:73789556-73789575 | None:intergenic | 45.0% |
! | ACATGGGTGACACCTTTTCT+TGG | + | chr7_3:73789590-73789609 | None:intergenic | 45.0% |
GACATGCTACCTTCATCACA+TGG | + | chr7_3:73789607-73789626 | None:intergenic | 45.0% | |
GAAACCAAAGACCACGAAGA+AGG | - | chr7_3:73789645-73789664 | Msa1123060:intron | 45.0% | |
! | ATTTGGTTCCACCTTCTTCG+TGG | + | chr7_3:73789659-73789678 | None:intergenic | 45.0% |
AAACATGCTGTGAGGGGAAA+TGG | - | chr7_3:73790066-73790085 | Msa1123060:intron | 45.0% | |
!!! | TGCGTTTCTGGCTTTGGTTT+TGG | - | chr7_3:73790222-73790241 | Msa1123060:intron | 45.0% |
CTACTACAGCACATGAACAG+GGG | + | chr7_3:73790255-73790274 | None:intergenic | 45.0% | |
GCTACTACAGCACATGAACA+GGG | + | chr7_3:73790256-73790275 | None:intergenic | 45.0% | |
TGCTACTACAGCACATGAAC+AGG | + | chr7_3:73790257-73790276 | None:intergenic | 45.0% | |
TGTGCTGTAGTAGCATGAGA+AGG | - | chr7_3:73790262-73790281 | Msa1123060:intron | 45.0% | |
AGTAGCATGAGAAGGAACCT+AGG | - | chr7_3:73790270-73790289 | Msa1123060:intron | 45.0% | |
GCAGCAACTTCAATAGTAGC+AGG | - | chr7_3:73790904-73790923 | Msa1123060:intron | 45.0% | |
ATGGGAAGGCTAAAGCTCAT+AGG | + | chr7_3:73791195-73791214 | None:intergenic | 45.0% | |
! | GCGGCATTTTTCTCGGTAAT+TGG | + | chr7_3:73791582-73791601 | None:intergenic | 45.0% |
TTCGTCGCGCTGTAAAAATG+GGG | + | chr7_3:73791633-73791652 | None:intergenic | 45.0% | |
AGCGCGACGAAATATCGTTA+TGG | - | chr7_3:73791642-73791661 | Msa1123060:intron | 45.0% | |
GCGCGACGAAATATCGTTAT+GGG | - | chr7_3:73791643-73791662 | Msa1123060:intron | 45.0% | |
ATGCAGTTGTACTTGCCTTG+TGG | + | chr7_3:73792427-73792446 | None:intergenic | 45.0% | |
! | CCAGTACTTTTAATCCACGC+GGG | + | chr7_3:73792766-73792785 | None:intergenic | 45.0% |
TGATCCTAGCCATGAGAATG+AGG | + | chr7_3:73792919-73792938 | None:intergenic | 45.0% | |
ACCGTAATTCCATCCATGAC+GGG | + | chr7_3:73792944-73792963 | None:intergenic | 45.0% | |
GTCATGGATGGAATTACGGT+TGG | - | chr7_3:73792944-73792963 | Msa1123060:CDS | 45.0% | |
CATTCATATGTGTGCACTGC+AGG | - | chr7_3:73793155-73793174 | Msa1123060:CDS | 45.0% | |
! | AGGTGTCACCCATGTGATGA+AGG | - | chr7_3:73789595-73789614 | Msa1123060:intron | 50.0% |
ACCAAAGACCACGAAGAAGG+TGG | - | chr7_3:73789648-73789667 | Msa1123060:intron | 50.0% | |
TCCACCTTCTTCGTGGTCTT+TGG | + | chr7_3:73789652-73789671 | None:intergenic | 50.0% | |
GAACGAAACCAAAGACCACG+AGG | - | chr7_3:73789641-73789660 | Msa1123060:intron | 50.0% | |
GAAACCAAAGACCACGAGGA+AGG | - | chr7_3:73789687-73789706 | Msa1123060:intron | 50.0% | |
TCGTCGCGCTGTAAAAATGG+GGG | + | chr7_3:73791632-73791651 | None:intergenic | 50.0% | |
GTCGCAGATTTCGCGATTTC+AGG | + | chr7_3:73791865-73791884 | None:intergenic | 50.0% | |
TTGCAGTAGCACTTGCCTTG+TGG | + | chr7_3:73792601-73792620 | None:intergenic | 50.0% | |
GGGACTCTGTGATGATATGG+AGG | + | chr7_3:73792746-73792765 | None:intergenic | 50.0% | |
! | CCCGCGTGGATTAAAAGTAC+TGG | - | chr7_3:73792763-73792782 | Msa1123060:CDS | 50.0% |
AGCCTTAGACCTCATTGGCA+CGG | - | chr7_3:73792877-73792896 | Msa1123060:CDS | 50.0% | |
AACCGTGCCAATGAGGTCTA+AGG | + | chr7_3:73792882-73792901 | None:intergenic | 50.0% | |
TACGTTCAACCGTGCCAATG+AGG | + | chr7_3:73792889-73792908 | None:intergenic | 50.0% | |
TCGACCTCATTCTCATGGCT+AGG | - | chr7_3:73792912-73792931 | Msa1123060:CDS | 50.0% | |
GCCCGTCATGGATGGAATTA+CGG | - | chr7_3:73792940-73792959 | Msa1123060:CDS | 50.0% | |
! | CTGCGCGATTTAGAATACCC+TGG | - | chr7_3:73793189-73793208 | Msa1123060:CDS | 50.0% |
GAATACCCTGGCCAGATTGT+TGG | - | chr7_3:73793201-73793220 | Msa1123060:CDS | 50.0% | |
AGACACCAACAATCTGGCCA+GGG | + | chr7_3:73793209-73793228 | None:intergenic | 50.0% | |
GACGTGAGACACCAACAATC+TGG | + | chr7_3:73793215-73793234 | None:intergenic | 50.0% | |
ACCAAAGACCACGAGGAAGG+TGG | - | chr7_3:73789690-73789709 | Msa1123060:intron | 55.0% | |
TCCACCTTCCTCGTGGTCTT+TGG | + | chr7_3:73789694-73789713 | None:intergenic | 55.0% | |
TTTCGGTTCCACCTTCCTCG+TGG | + | chr7_3:73789701-73789720 | None:intergenic | 55.0% | |
GGCACCCCTGCATATGAAAC+TGG | + | chr7_3:73790880-73790899 | None:intergenic | 55.0% | |
CGCGGGACTCTGTGATGATA+TGG | + | chr7_3:73792749-73792768 | None:intergenic | 55.0% | |
TATCATCACAGAGTCCCGCG+TGG | - | chr7_3:73792749-73792768 | Msa1123060:CDS | 55.0% | |
AGGATCATGCCCGTCATGGA+TGG | - | chr7_3:73792932-73792951 | Msa1123060:CDS | 55.0% | |
GAGACACCAACAATCTGGCC+AGG | + | chr7_3:73793210-73793229 | None:intergenic | 55.0% | |
GGCTAGGATCATGCCCGTCA+TGG | - | chr7_3:73792928-73792947 | Msa1123060:CDS | 60.0% | |
TACGCGATCGCGGCCTTGAC+TGG | - | chr7_3:73791936-73791955 | Msa1123060:intron | 65.0% | |
ACGCGATCGCGGCCTTGACT+GGG | - | chr7_3:73791937-73791956 | Msa1123060:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 73789319 | 73793362 | 73789319 | ID=Msa1123060;Name=Msa1123060 |
chr7_3 | mRNA | 73789319 | 73793362 | 73789319 | ID=Msa1123060-mRNA-1;Parent=Msa1123060;Name=Msa1123060-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|402 |
chr7_3 | exon | 73792542 | 73793362 | 73792542 | ID=Msa1123060-mRNA-1:exon:19476;Parent=Msa1123060-mRNA-1 |
chr7_3 | exon | 73789720 | 73789921 | 73789720 | ID=Msa1123060-mRNA-1:exon:19475;Parent=Msa1123060-mRNA-1 |
chr7_3 | exon | 73789319 | 73789504 | 73789319 | ID=Msa1123060-mRNA-1:exon:19474;Parent=Msa1123060-mRNA-1 |
chr7_3 | CDS | 73792542 | 73793362 | 73792542 | ID=Msa1123060-mRNA-1:cds;Parent=Msa1123060-mRNA-1 |
chr7_3 | CDS | 73789720 | 73789921 | 73789720 | ID=Msa1123060-mRNA-1:cds;Parent=Msa1123060-mRNA-1 |
chr7_3 | CDS | 73789319 | 73789504 | 73789319 | ID=Msa1123060-mRNA-1:cds;Parent=Msa1123060-mRNA-1 |
Gene Sequence |
Protein sequence |