AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1123060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123060 MtrunA17_Chr7g0262311 92.000 275 21 1 1 275 1 274 0.0 523
Msa1123060 MtrunA17_Chr5g0395781 50.352 284 115 7 1 275 1 267 7.88e-84 257
Msa1123060 MtrunA17_Chr5g0395751 57.940 233 64 4 16 234 6 218 1.21e-69 219
Msa1123060 MtrunA17_Chr5g0395741 53.365 208 74 4 71 275 118 305 2.43e-54 182
Msa1123060 MtrunA17_Chr3g0097201 58.857 175 57 2 102 275 1 161 1.07e-52 173
Msa1123060 MtrunA17_Chr3g0097211 67.816 87 25 1 6 89 2 88 6.32e-30 113
Msa1123060 MtrunA17_Chr4g0033741 38.095 189 90 7 35 222 10 172 1.19e-23 96.7
Msa1123060 MtrunA17_Chr5g0444241 37.584 149 88 3 129 272 186 334 3.66e-23 99.4
Msa1123060 MtrunA17_Chr7g0262351 47.500 120 58 3 279 398 22 136 4.64e-23 94.0
Msa1123060 MtrunA17_Chr8g0364781 45.545 101 52 2 279 377 12 111 2.59e-16 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123060 AT5G26594.1 39.167 120 69 2 279 398 18 133 5.74e-17 77.8
Msa1123060 AT3G04280.1 40.909 110 61 2 268 376 14 120 6.86e-14 68.9
Msa1123060 AT3G04280.2 40.909 110 61 2 268 376 14 120 6.86e-14 68.9
Msa1123060 AT3G04280.3 40.909 110 61 2 268 376 14 120 6.86e-14 68.9
Msa1123060 AT3G24850.1 30.556 180 102 6 115 285 183 348 2.90e-13 70.9
Msa1123060 AT2G31720.1 32.099 162 104 3 156 314 137 295 7.03e-13 69.3
Msa1123060 AT1G05920.1 31.746 126 78 4 156 273 171 296 1.52e-11 65.5
Msa1123060 AT5G24050.1 25.610 246 158 6 35 271 100 329 3.45e-11 64.7

Find 82 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCAACATTTGGTCATTT+AGG 0.092697 7_3:-73792553 Msa1123060:CDS
TTTACAGTCTTATACAAAAT+TGG 0.190742 7_3:-73792616 Msa1123060:CDS
GTGGCATTAAAAGACGATTT+TGG 0.230260 7_3:+73792801 None:intergenic
AGTGGAGAATGACTGATAAA+TGG 0.236879 7_3:-73792640 Msa1123060:CDS
TCCACCTTCTTCGTGGTCTT+TGG 0.253725 7_3:+73793010 None:intergenic
ACTCAACATTTGGTCATTTA+GGG 0.255771 7_3:-73792552 Msa1123060:CDS
TCCACCTTCCTCGTGGTCTT+TGG 0.286800 7_3:+73792968 None:intergenic
ATCTTGTTCTTGACATTAAT+AGG 0.287639 7_3:+73792896 None:intergenic
ATTGTGAAGCTTCTAAAATA+AGG 0.305880 7_3:+73792674 None:intergenic
TTGACATTAATAGGTAATAT+TGG 0.338094 7_3:+73792905 None:intergenic
CCAAGTTCGTCTTCTTTAAG+TGG 0.388473 7_3:+73792782 None:intergenic
CGCATTGCCAAGCAAAGTTA+TGG 0.391834 7_3:+73793224 None:intergenic
GCCCGTCATGGATGGAATTA+CGG 0.406314 7_3:-73789719 Msa1123060:intron
CTGCATATTCATCATTAGTA+AGG 0.410681 7_3:+73789423 None:intergenic
GTGGAGAATGACTGATAAAT+GGG 0.417628 7_3:-73792639 Msa1123060:CDS
ACCTTCTCCATAACTTTGCT+TGG 0.420476 7_3:-73793231 Msa1123060:CDS
AGAGATATCTTGACATTACT+TGG 0.437895 7_3:-73789838 Msa1123060:CDS
CCACTTAAAGAAGACGAACT+TGG 0.439642 7_3:-73792782 Msa1123060:CDS
GAATACCCTGGCCAGATTGT+TGG 0.444431 7_3:-73789458 Msa1123060:CDS
TTGTGAAGCTTCTAAAATAA+GGG 0.449884 7_3:+73792675 None:intergenic
AACCGTGCCAATGAGGTCTA+AGG 0.458884 7_3:+73789780 None:intergenic
TATGCAGAATTTCGCAATGC+AGG 0.461823 7_3:-73789407 Msa1123060:CDS
AAACATGCTGTGAGGGGAAA+TGG 0.465819 7_3:-73792593 Msa1123060:CDS
ACAATCACTTCTAAACCAAC+CGG 0.487692 7_3:+73792704 None:intergenic
GACGTGAGACACCAACAATC+TGG 0.490889 7_3:+73789447 None:intergenic
GATGATCTACATCATGAAGA+TGG 0.493143 7_3:-73789380 Msa1123060:CDS
ATTTGGTTCCACCTTCTTCG+TGG 0.495745 7_3:+73793003 None:intergenic
CCCGCGTGGATTAAAAGTAC+TGG 0.511605 7_3:-73789896 Msa1123060:CDS
GAGACACCAACAATCTGGCC+AGG 0.513873 7_3:+73789452 None:intergenic
AAAGAAGCCTTAGACCTCAT+TGG 0.516268 7_3:-73789787 Msa1123060:CDS
TCACAATGTGCTTCAAGAAG+TGG 0.523622 7_3:-73792658 Msa1123060:CDS
AGGATCATGCCCGTCATGGA+TGG 0.527719 7_3:-73789727 Msa1123060:CDS
AAATTTCTGTTCCTTCGTCA+TGG 0.529500 7_3:+73793312 None:intergenic
TATCTTGACATTACTTGGTG+TGG 0.530817 7_3:-73789833 Msa1123060:CDS
AAATTGGAAACATGCTGTGA+GGG 0.531590 7_3:-73792600 Msa1123060:CDS
TTTCAACATATGATAGTGCA+AGG 0.532595 7_3:+73789352 None:intergenic
AAAAGGTCATGCTAGTTGAC+AGG 0.534345 7_3:+73789308 None:intergenic
AGGTGTCACCCATGTGATGA+AGG 0.535873 7_3:-73793064 Msa1123060:CDS
AAGTAGCGAATACCAAGAAA+AGG 0.536745 7_3:-73793084 Msa1123060:CDS
CATTTGGTCATTTAGGGTCA+AGG 0.537795 7_3:-73792546 Msa1123060:CDS
TTTGCGTCAGATATCGATGA+AGG 0.539968 7_3:-73792824 Msa1123060:CDS
GGAGAAGATCAAAGGATACA+TGG 0.546580 7_3:-73793278 Msa1123060:CDS
GGCTAGGATCATGCCCGTCA+TGG 0.548604 7_3:-73789731 Msa1123060:CDS
ACCGTAATTCCATCCATGAC+GGG 0.549235 7_3:+73789718 None:intergenic
ACAGAAATTTGCTATCACTA+AGG 0.550411 7_3:-73793299 Msa1123060:CDS
GAAACCAAAGACCACGAAGA+AGG 0.554191 7_3:-73793014 Msa1123060:CDS
TAATGTCAAGAACAAGATCA+AGG 0.554858 7_3:-73792891 Msa1123060:CDS
TGGATTAAAAGTACTGGTTG+TGG 0.556379 7_3:-73789890 Msa1123060:CDS
AACAAGATCAAGGAGTTGAA+TGG 0.557360 7_3:-73792881 Msa1123060:CDS
TCTTCTTCAGAATAAAATTG+TGG 0.559109 7_3:+73793184 None:intergenic
AAAGGAGACTTTAGATACAA+AGG 0.565224 7_3:-73792741 Msa1123060:CDS
GCCAAGCAAAGTTATGGAGA+AGG 0.574243 7_3:+73793230 None:intergenic
ATTCCACAAAACACAGTGGA+AGG 0.576751 7_3:-73793109 Msa1123060:CDS
ACCAAAGACCACGAGGAAGG+TGG 0.579088 7_3:-73792969 Msa1123060:CDS
ATGCAGAATTTCGCAATGCA+GGG 0.581025 7_3:-73789406 Msa1123060:CDS
TGATCCTAGCCATGAGAATG+AGG 0.586084 7_3:+73789743 None:intergenic
ATCACTAAGGAGAAGATCAA+AGG 0.586998 7_3:-73793286 Msa1123060:CDS
TAAATTCGACCTCATTCTCA+TGG 0.588335 7_3:-73789752 Msa1123060:CDS
TCGACCTCATTCTCATGGCT+AGG 0.592585 7_3:-73789747 Msa1123060:CDS
AACCGTAATTCCATCCATGA+CGG 0.593130 7_3:+73789717 None:intergenic
GACATGCTACCTTCATCACA+TGG 0.593230 7_3:+73793055 None:intergenic
TTAATAGGTAATATTGGCGG+AGG 0.598936 7_3:+73792911 None:intergenic
TACGTTCAACCGTGCCAATG+AGG 0.601575 7_3:+73789773 None:intergenic
GAAACCAAAGACCACGAGGA+AGG 0.602167 7_3:-73792972 Msa1123060:CDS
ACCAAAGACCACGAAGAAGG+TGG 0.606619 7_3:-73793011 Msa1123060:CDS
AGCCTTAGACCTCATTGGCA+CGG 0.608494 7_3:-73789782 Msa1123060:CDS
ACATTAATAGGTAATATTGG+CGG 0.614565 7_3:+73792908 None:intergenic
TGGTTTAGAAGTGATTGTGT+TGG 0.618872 7_3:-73792699 Msa1123060:CDS
AGATGATGATCTTGTTCGAA+TGG 0.623757 7_3:-73789866 Msa1123060:CDS
TTCAACATATGATAGTGCAA+GGG 0.630612 7_3:+73789353 None:intergenic
TTTCGGTTCCACCTTCCTCG+TGG 0.635344 7_3:+73792961 None:intergenic
AATTGGAAACATGCTGTGAG+GGG 0.651158 7_3:-73792599 Msa1123060:CDS
TGAAGGTAGCATGTCTTATG+CGG 0.655262 7_3:-73793047 Msa1123060:CDS
AGACACCAACAATCTGGCCA+GGG 0.657108 7_3:+73789453 None:intergenic
AAATACTGAAGCCATGACGA+AGG 0.663599 7_3:-73793323 Msa1123060:CDS
AAAATTGGAAACATGCTGTG+AGG 0.670199 7_3:-73792601 Msa1123060:CDS
AAGTTATGGAGAAGGTTGAG+TGG 0.683312 7_3:+73793238 None:intergenic
GAACGAAACCAAAGACCACG+AGG 0.685629 7_3:-73792976 Msa1123060:CDS
CTGCGCGATTTAGAATACCC+TGG 0.695519 7_3:-73789470 Msa1123060:CDS
ACATGCTACCTTCATCACAT+GGG 0.704522 7_3:+73793056 None:intergenic
AAATATTCCACAAAACACAG+TGG 0.735384 7_3:-73793113 Msa1123060:CDS
TATCATCACAGAGTCCCGCG+TGG 0.741838 7_3:-73789910 Msa1123060:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTATCTATTATGTTT+TGG - chr7_3:73791271-73791290 Msa1123060:intron 10.0%
!! TGAAAAAAAAAAGTAAAAAA+AGG + chr7_3:73792163-73792182 None:intergenic 10.0%
!!! TTTTTCTTATCTTGTTTTTT+CGG + chr7_3:73789718-73789737 None:intergenic 15.0%
!! AAAACAAGATAAGAAAAATT+TGG - chr7_3:73789720-73789739 Msa1123060:CDS 15.0%
!!! TGTATGATTTTCTTTTTAAA+AGG - chr7_3:73790638-73790657 Msa1123060:intron 15.0%
!! TCAAAACTTATAGATTAAAA+AGG + chr7_3:73791076-73791095 None:intergenic 15.0%
!!! AAATTTGTCACAAATTTTAT+AGG + chr7_3:73791386-73791405 None:intergenic 15.0%
!! TTACAAATATTTCAAAATGA+AGG + chr7_3:73791482-73791501 None:intergenic 15.0%
!!! TTCATTTTGAAATATTTGTA+AGG - chr7_3:73791481-73791500 Msa1123060:intron 15.0%
!! ATTTATATCTAAGAATTAGA+GGG + chr7_3:73792312-73792331 None:intergenic 15.0%
!! TATTTATATCTAAGAATTAG+AGG + chr7_3:73792313-73792332 None:intergenic 15.0%
!! TTGACATTAATAGGTAATAT+TGG + chr7_3:73789757-73789776 None:intergenic 20.0%
!! TTAGATACAAAGGATAAAAA+CGG - chr7_3:73789928-73789947 Msa1123060:intron 20.0%
!!! TTTACAGTCTTATACAAAAT+TGG - chr7_3:73790043-73790062 Msa1123060:intron 20.0%
!! CTTTGTACTCAAAATTAATT+AGG - chr7_3:73790146-73790165 Msa1123060:intron 20.0%
!! ATATAGAAAAACAAATTCCT+AGG + chr7_3:73790290-73790309 None:intergenic 20.0%
!! TTGATAAAAAGACCAATATT+AGG + chr7_3:73790609-73790628 None:intergenic 20.0%
!!! ATTTATCTATTATGTTTTGG+TGG - chr7_3:73791274-73791293 Msa1123060:intron 20.0%
!!! TTTATCTATTATGTTTTGGT+GGG - chr7_3:73791275-73791294 Msa1123060:intron 20.0%
!! AATATTTCAAAATGAAGGTA+CGG + chr7_3:73791477-73791496 None:intergenic 20.0%
!!! TATTTTATGGACTAACAATT+TGG - chr7_3:73792037-73792056 Msa1123060:intron 20.0%
!! ATAGAAAATCAAGATTGAAA+AGG + chr7_3:73792678-73792697 None:intergenic 20.0%
!! TAATTACATACATACATACA+CGG - chr7_3:73792976-73792995 Msa1123060:CDS 20.0%
!!! ATTGCTTTAAACTAATTCAT+GGG + chr7_3:73793013-73793032 None:intergenic 20.0%
!!! AATTGCTTTAAACTAATTCA+TGG + chr7_3:73793014-73793033 None:intergenic 20.0%
!! ATTATGAATGATTATATGCT+AGG + chr7_3:73793118-73793137 None:intergenic 20.0%
!!! TGTTGAAACTAATTTTGAAA+AGG - chr7_3:73793322-73793341 Msa1123060:CDS 20.0%
!!! GTTGAAACTAATTTTGAAAA+GGG - chr7_3:73793323-73793342 Msa1123060:CDS 20.0%
! ATACATGGAAAAAGCAAAAA+CGG - chr7_3:73789396-73789415 Msa1123060:CDS 25.0%
! TCTTCTTCAGAATAAAATTG+TGG + chr7_3:73789478-73789497 None:intergenic 25.0%
!!! TTTGGTTTCGTTCTTTTATT+TGG + chr7_3:73789676-73789695 None:intergenic 25.0%
! ACATTAATAGGTAATATTGG+CGG + chr7_3:73789754-73789773 None:intergenic 25.0%
! ATCTTGTTCTTGACATTAAT+AGG + chr7_3:73789766-73789785 None:intergenic 25.0%
!!! TTGTGAAGCTTCTAAAATAA+GGG + chr7_3:73789987-73790006 None:intergenic 25.0%
!!! ATTGTGAAGCTTCTAAAATA+AGG + chr7_3:73789988-73790007 None:intergenic 25.0%
!!! CAAAACACCAAACTTTTTTA+AGG - chr7_3:73790452-73790471 Msa1123060:intron 25.0%
! GAAAGATCCTTAAAAAAGTT+TGG + chr7_3:73790462-73790481 None:intergenic 25.0%
!! GGACAAAATATTTTCTTACT+AGG - chr7_3:73790559-73790578 Msa1123060:intron 25.0%
! TAGCAGGAAGAATTATTATA+TGG - chr7_3:73790920-73790939 Msa1123060:intron 25.0%
!! ATTATTTTCCTTGATCATGT+TGG - chr7_3:73791049-73791068 Msa1123060:intron 25.0%
! GTCTGTGATAAAATCATTTA+TGG - chr7_3:73791141-73791160 Msa1123060:intron 25.0%
!! TATTTGAAGTCTTAAACTAG+AGG + chr7_3:73791753-73791772 None:intergenic 25.0%
! ATAGAGCACAGTTTAAATTT+CGG + chr7_3:73791964-73791983 None:intergenic 25.0%
!! TTAGGAAAGTAAGAATTTTG+AGG + chr7_3:73792066-73792085 None:intergenic 25.0%
! ATTAGAGGGTAAATTTAGAT+AGG + chr7_3:73792298-73792317 None:intergenic 25.0%
! ATTACAAGATTTCAAGATGA+TGG + chr7_3:73792452-73792471 None:intergenic 25.0%
! GTATCAAGATAAAGATATAG+AGG + chr7_3:73792479-73792498 None:intergenic 25.0%
! ATCAAGATTGAAAAGGAAAA+TGG + chr7_3:73792671-73792690 None:intergenic 25.0%
! AAACAGAACTGTAGTAATTA+AGG - chr7_3:73792701-73792720 Msa1123060:CDS 25.0%
!! ACAGAAATTTGCTATCACTA+AGG - chr7_3:73789360-73789379 Msa1123060:CDS 30.0%
!!! GTGGAATATTTTGAGTTTCT+TGG + chr7_3:73789537-73789556 None:intergenic 30.0%
AAATATTCCACAAAACACAG+TGG - chr7_3:73789546-73789565 Msa1123060:intron 30.0%
TAATGTCAAGAACAAGATCA+AGG - chr7_3:73789768-73789787 Msa1123060:CDS 30.0%
AAAGGAGACTTTAGATACAA+AGG - chr7_3:73789918-73789937 Msa1123060:intron 30.0%
AAAGGATAAAAACGGTAAAC+CGG - chr7_3:73789936-73789955 Msa1123060:intron 30.0%
TAGGTCAAAAACTCAACATT+TGG - chr7_3:73790097-73790116 Msa1123060:intron 30.0%
AACTCAACATTTGGTCATTT+AGG - chr7_3:73790106-73790125 Msa1123060:intron 30.0%
ACTCAACATTTGGTCATTTA+GGG - chr7_3:73790107-73790126 Msa1123060:intron 30.0%
TACTTCTCTGTATCAATGTA+TGG - chr7_3:73790392-73790411 Msa1123060:intron 30.0%
TTTCCCTTTATGCCTAATAT+TGG - chr7_3:73790594-73790613 Msa1123060:intron 30.0%
AGACCAATATTAGGCATAAA+GGG + chr7_3:73790600-73790619 None:intergenic 30.0%
AAGACCAATATTAGGCATAA+AGG + chr7_3:73790601-73790620 None:intergenic 30.0%
TTATAGCACACTCAATAAAC+AGG + chr7_3:73790746-73790765 None:intergenic 30.0%
! TATGGTCTTCAATTTGCTTA+TGG - chr7_3:73790938-73790957 Msa1123060:intron 30.0%
AAATAATGTAGAGTCACCTA+AGG + chr7_3:73791036-73791055 None:intergenic 30.0%
AACTTAGTCTCATACATTCA+AGG + chr7_3:73791218-73791237 None:intergenic 30.0%
AGTCTCAAAGATTACGAATT+TGG + chr7_3:73791350-73791369 None:intergenic 30.0%
! TTGAGCTGATTCAATTTGAT+TGG - chr7_3:73791419-73791438 Msa1123060:intron 30.0%
! TAACCATTAGCTTAAATGCT+TGG + chr7_3:73791452-73791471 None:intergenic 30.0%
ACATAATCAAAATCACAGCT+AGG + chr7_3:73791512-73791531 None:intergenic 30.0%
AAAACCTTGCATATGATAGA+AGG + chr7_3:73791550-73791569 None:intergenic 30.0%
! AACAACTTACCTTTTTGTTG+CGG + chr7_3:73791601-73791620 None:intergenic 30.0%
ACTTGTATACTCAATGTTGT+CGG + chr7_3:73791987-73792006 None:intergenic 30.0%
!!! CAACTGTGTGACTTATTTTA+TGG - chr7_3:73792024-73792043 Msa1123060:intron 30.0%
TTCCTAACTTCAAACTTAGT+TGG - chr7_3:73792079-73792098 Msa1123060:intron 30.0%
! TACCAACTAAGTTTGAAGTT+AGG + chr7_3:73792084-73792103 None:intergenic 30.0%
! TTGAAGTTCCTCTATGATTT+TGG - chr7_3:73792121-73792140 Msa1123060:intron 30.0%
AACTGTTTCCAAAATCATAG+AGG + chr7_3:73792132-73792151 None:intergenic 30.0%
!!! AGTTAGTTGGTTATTTTGGT+TGG + chr7_3:73792198-73792217 None:intergenic 30.0%
! AGTCAGTTAGTTGGTTATTT+TGG + chr7_3:73792202-73792221 None:intergenic 30.0%
AATAAAGTGAGTCAGTTAGT+TGG + chr7_3:73792211-73792230 None:intergenic 30.0%
! GATAGGTAGAAATTGACTTT+GGG + chr7_3:73792281-73792300 None:intergenic 30.0%
! AGATAGGTAGAAATTGACTT+TGG + chr7_3:73792282-73792301 None:intergenic 30.0%
AGAACAAACTCTTATTCTGT+GGG + chr7_3:73792404-73792423 None:intergenic 30.0%
CTGTAGTAATTAAGGCATAA+TGG - chr7_3:73792709-73792728 Msa1123060:CDS 30.0%
AGAGATATCTTGACATTACT+TGG - chr7_3:73792821-73792840 Msa1123060:CDS 30.0%
ATGAACAGAAAGAAAATGCA+TGG - chr7_3:73793076-73793095 Msa1123060:CDS 30.0%
TGAACAGAAAGAAAATGCAT+GGG - chr7_3:73793077-73793096 Msa1123060:CDS 30.0%
CTGCATATTCATCATTAGTA+AGG + chr7_3:73793239-73793258 None:intergenic 30.0%
! TTCAACATATGATAGTGCAA+GGG + chr7_3:73793309-73793328 None:intergenic 30.0%
! TTTCAACATATGATAGTGCA+AGG + chr7_3:73793310-73793329 None:intergenic 30.0%
AAATTTCTGTTCCTTCGTCA+TGG + chr7_3:73789350-73789369 None:intergenic 35.0%
ATCACTAAGGAGAAGATCAA+AGG - chr7_3:73789373-73789392 Msa1123060:CDS 35.0%
AAGTAGCGAATACCAAGAAA+AGG - chr7_3:73789575-73789594 Msa1123060:intron 35.0%
TTAATAGGTAATATTGGCGG+AGG + chr7_3:73789751-73789770 None:intergenic 35.0%
AACAAGATCAAGGAGTTGAA+TGG - chr7_3:73789778-73789797 Msa1123060:CDS 35.0%
! GTGGCATTAAAAGACGATTT+TGG + chr7_3:73789861-73789880 None:intergenic 35.0%
! TTTTCTCACCAAGACAGAAA+AGG - chr7_3:73789900-73789919 Msa1123060:CDS 35.0%
! TAAAGTCTCCTTTTCTGTCT+TGG + chr7_3:73789911-73789930 None:intergenic 35.0%
ACAATCACTTCTAAACCAAC+CGG + chr7_3:73789958-73789977 None:intergenic 35.0%
TGGTTTAGAAGTGATTGTGT+TGG - chr7_3:73789960-73789979 Msa1123060:intron 35.0%
AGTGGAGAATGACTGATAAA+TGG - chr7_3:73790019-73790038 Msa1123060:intron 35.0%
GTGGAGAATGACTGATAAAT+GGG - chr7_3:73790020-73790039 Msa1123060:intron 35.0%
AAAATTGGAAACATGCTGTG+AGG - chr7_3:73790058-73790077 Msa1123060:intron 35.0%
AAATTGGAAACATGCTGTGA+GGG - chr7_3:73790059-73790078 Msa1123060:intron 35.0%
!!! AGGGGAAATGGTTTTGAAAT+AGG - chr7_3:73790078-73790097 Msa1123060:intron 35.0%
! GTACTTTGTTTATGCGTTTC+TGG - chr7_3:73790210-73790229 Msa1123060:intron 35.0%
! CAGTTTTTGCTCTCTTTCAT+TGG - chr7_3:73790314-73790333 Msa1123060:intron 35.0%
! TAAGGATCTTTCCTTTTGTG+AGG - chr7_3:73790470-73790489 Msa1123060:intron 35.0%
ATGCAATCAAACCTCACAAA+AGG + chr7_3:73790484-73790503 None:intergenic 35.0%
ATCAGTTCAGAATCTTTACC+TGG - chr7_3:73790516-73790535 Msa1123060:intron 35.0%
TAGTATGTGTCAAGTTCTGT+TGG - chr7_3:73790692-73790711 Msa1123060:intron 35.0%
AATCTCCAGTTTCATATGCA+GGG - chr7_3:73790872-73790891 Msa1123060:intron 35.0%
! GACAACTTGTTCTAAGTAGT+TGG - chr7_3:73790960-73790979 Msa1123060:intron 35.0%
CAATTTGACTATGACACCTT+AGG - chr7_3:73791017-73791036 Msa1123060:intron 35.0%
AAAAAGGACCAACATGATCA+AGG + chr7_3:73791060-73791079 None:intergenic 35.0%
! TTTTCTCAAAACATTCGCAG+TGG - chr7_3:73791166-73791185 Msa1123060:intron 35.0%
AGTCTCATACATTCAAGGAT+GGG + chr7_3:73791213-73791232 None:intergenic 35.0%
TAGTCTCATACATTCAAGGA+TGG + chr7_3:73791214-73791233 None:intergenic 35.0%
TTTGGTGGGATATAAGTGTT+TGG - chr7_3:73791289-73791308 Msa1123060:intron 35.0%
! CATTGACACAAAGACGATTT+TGG + chr7_3:73791320-73791339 None:intergenic 35.0%
ATCGTCTTTGTGTCAATGTT+AGG - chr7_3:73791322-73791341 Msa1123060:intron 35.0%
TCGTCTTTGTGTCAATGTTA+GGG - chr7_3:73791323-73791342 Msa1123060:intron 35.0%
TTGCCAAGCATTTAAGCTAA+TGG - chr7_3:73791446-73791465 Msa1123060:intron 35.0%
ATGATAGAAGGAACATGGAA+TGG + chr7_3:73791538-73791557 None:intergenic 35.0%
TGCATATGATAGAAGGAACA+TGG + chr7_3:73791543-73791562 None:intergenic 35.0%
TGTTCCTTCTATCATATGCA+AGG - chr7_3:73791543-73791562 Msa1123060:intron 35.0%
! TTTTGTTGCGGCATTTTTCT+CGG + chr7_3:73791589-73791608 None:intergenic 35.0%
AGAAAAATGCCGCAACAAAA+AGG - chr7_3:73791589-73791608 Msa1123060:intron 35.0%
AAACTAGAGGAAGAGTCTAA+AGG + chr7_3:73791740-73791759 None:intergenic 35.0%
GAGAACAAACTCTTATTCTG+TGG + chr7_3:73792405-73792424 None:intergenic 35.0%
! ATAAGAGTTTGTTCTCCACA+AGG - chr7_3:73792409-73792428 Msa1123060:intron 35.0%
GAAAGAACTCTTGATTACGT+GGG + chr7_3:73792573-73792592 None:intergenic 35.0%
AGAAAGAACTCTTGATTACG+TGG + chr7_3:73792574-73792593 None:intergenic 35.0%
!! TGGATTAAAAGTACTGGTTG+TGG - chr7_3:73792769-73792788 Msa1123060:CDS 35.0%
AGATGATGATCTTGTTCGAA+TGG - chr7_3:73792793-73792812 Msa1123060:CDS 35.0%
! TATCTTGACATTACTTGGTG+TGG - chr7_3:73792826-73792845 Msa1123060:CDS 35.0%
TAAATTCGACCTCATTCTCA+TGG - chr7_3:73792907-73792926 Msa1123060:CDS 35.0%
GAACAGAAAGAAAATGCATG+GGG - chr7_3:73793078-73793097 Msa1123060:CDS 35.0%
GATGATCTACATCATGAAGA+TGG - chr7_3:73793279-73793298 Msa1123060:CDS 35.0%
AAATACTGAAGCCATGACGA+AGG - chr7_3:73789336-73789355 Msa1123060:CDS 40.0%
GGAGAAGATCAAAGGATACA+TGG - chr7_3:73789381-73789400 Msa1123060:CDS 40.0%
AAGTTATGGAGAAGGTTGAG+TGG + chr7_3:73789424-73789443 None:intergenic 40.0%
ACCTTCTCCATAACTTTGCT+TGG - chr7_3:73789428-73789447 Msa1123060:CDS 40.0%
ATTCCACAAAACACAGTGGA+AGG - chr7_3:73789550-73789569 Msa1123060:intron 40.0%
ACATGCTACCTTCATCACAT+GGG + chr7_3:73789606-73789625 None:intergenic 40.0%
TGAAGGTAGCATGTCTTATG+CGG - chr7_3:73789612-73789631 Msa1123060:intron 40.0%
TTTGCGTCAGATATCGATGA+AGG - chr7_3:73789835-73789854 Msa1123060:CDS 40.0%
CCAAGTTCGTCTTCTTTAAG+TGG + chr7_3:73789880-73789899 None:intergenic 40.0%
CCACTTAAAGAAGACGAACT+TGG - chr7_3:73789877-73789896 Msa1123060:CDS 40.0%
GATAAAAACGGTAAACCGGT+TGG - chr7_3:73789940-73789959 Msa1123060:intron 40.0%
TCACAATGTGCTTCAAGAAG+TGG - chr7_3:73790001-73790020 Msa1123060:intron 40.0%
AATTGGAAACATGCTGTGAG+GGG - chr7_3:73790060-73790079 Msa1123060:intron 40.0%
! CATTTGGTCATTTAGGGTCA+AGG - chr7_3:73790113-73790132 Msa1123060:intron 40.0%
!! TGTTTATGCGTTTCTGGCTT+TGG - chr7_3:73790216-73790235 Msa1123060:intron 40.0%
! AGTCTAGAACTTGTGTTACC+AGG + chr7_3:73790537-73790556 None:intergenic 40.0%
!! GTAACACAAGTTCTAGACTC+TGG - chr7_3:73790538-73790557 Msa1123060:intron 40.0%
AGCACACTCAATAAACAGGA+TGG + chr7_3:73790742-73790761 None:intergenic 40.0%
GATTCTCTTGCAACTACTTC+AGG + chr7_3:73790856-73790875 None:intergenic 40.0%
GAATCTCCAGTTTCATATGC+AGG - chr7_3:73790871-73790890 Msa1123060:intron 40.0%
ATCTCCAGTTTCATATGCAG+GGG - chr7_3:73790873-73790892 Msa1123060:intron 40.0%
ACTATTGAAGTTGCTGCTAG+TGG + chr7_3:73790901-73790920 None:intergenic 40.0%
TCATACATTCAAGGATGGGA+AGG + chr7_3:73791209-73791228 None:intergenic 40.0%
! TGACACAAAGACGATTTTGG+TGG + chr7_3:73791317-73791336 None:intergenic 40.0%
! CATTTTTCTCGGTAATTGGC+TGG + chr7_3:73791578-73791597 None:intergenic 40.0%
GCTGTAAAAATGGGGGAAAA+CGG + chr7_3:73791625-73791644 None:intergenic 40.0%
TTTCGTCGCGCTGTAAAAAT+GGG + chr7_3:73791634-73791653 None:intergenic 40.0%
ATTTCGTCGCGCTGTAAAAA+TGG + chr7_3:73791635-73791654 None:intergenic 40.0%
! CGAAATTTTATACGCGATCG+CGG - chr7_3:73791926-73791945 Msa1123060:intron 40.0%
TTAAATTTCGGTCCCAGTCA+AGG + chr7_3:73791952-73791971 None:intergenic 40.0%
GAGTTCTTTCTTTCTCCACA+AGG - chr7_3:73792583-73792602 Msa1123060:CDS 40.0%
! ACCAGTACTTTTAATCCACG+CGG + chr7_3:73792767-73792786 None:intergenic 40.0%
GAAACTCACGCAGTCAAAAA+TGG - chr7_3:73792848-73792867 Msa1123060:CDS 40.0%
AAAGAAGCCTTAGACCTCAT+TGG - chr7_3:73792872-73792891 Msa1123060:CDS 40.0%
AACCGTAATTCCATCCATGA+CGG + chr7_3:73792945-73792964 None:intergenic 40.0%
TATGCAGAATTTCGCAATGC+AGG - chr7_3:73793252-73793271 Msa1123060:CDS 40.0%
ATGCAGAATTTCGCAATGCA+GGG - chr7_3:73793253-73793272 Msa1123060:CDS 40.0%
GCCAAGCAAAGTTATGGAGA+AGG + chr7_3:73789432-73789451 None:intergenic 45.0%
CGCATTGCCAAGCAAAGTTA+TGG + chr7_3:73789438-73789457 None:intergenic 45.0%
! TCTCCTTCCACTGTGTTTTG+TGG + chr7_3:73789556-73789575 None:intergenic 45.0%
! ACATGGGTGACACCTTTTCT+TGG + chr7_3:73789590-73789609 None:intergenic 45.0%
GACATGCTACCTTCATCACA+TGG + chr7_3:73789607-73789626 None:intergenic 45.0%
GAAACCAAAGACCACGAAGA+AGG - chr7_3:73789645-73789664 Msa1123060:intron 45.0%
! ATTTGGTTCCACCTTCTTCG+TGG + chr7_3:73789659-73789678 None:intergenic 45.0%
AAACATGCTGTGAGGGGAAA+TGG - chr7_3:73790066-73790085 Msa1123060:intron 45.0%
!!! TGCGTTTCTGGCTTTGGTTT+TGG - chr7_3:73790222-73790241 Msa1123060:intron 45.0%
CTACTACAGCACATGAACAG+GGG + chr7_3:73790255-73790274 None:intergenic 45.0%
GCTACTACAGCACATGAACA+GGG + chr7_3:73790256-73790275 None:intergenic 45.0%
TGCTACTACAGCACATGAAC+AGG + chr7_3:73790257-73790276 None:intergenic 45.0%
TGTGCTGTAGTAGCATGAGA+AGG - chr7_3:73790262-73790281 Msa1123060:intron 45.0%
AGTAGCATGAGAAGGAACCT+AGG - chr7_3:73790270-73790289 Msa1123060:intron 45.0%
GCAGCAACTTCAATAGTAGC+AGG - chr7_3:73790904-73790923 Msa1123060:intron 45.0%
ATGGGAAGGCTAAAGCTCAT+AGG + chr7_3:73791195-73791214 None:intergenic 45.0%
! GCGGCATTTTTCTCGGTAAT+TGG + chr7_3:73791582-73791601 None:intergenic 45.0%
TTCGTCGCGCTGTAAAAATG+GGG + chr7_3:73791633-73791652 None:intergenic 45.0%
AGCGCGACGAAATATCGTTA+TGG - chr7_3:73791642-73791661 Msa1123060:intron 45.0%
GCGCGACGAAATATCGTTAT+GGG - chr7_3:73791643-73791662 Msa1123060:intron 45.0%
ATGCAGTTGTACTTGCCTTG+TGG + chr7_3:73792427-73792446 None:intergenic 45.0%
! CCAGTACTTTTAATCCACGC+GGG + chr7_3:73792766-73792785 None:intergenic 45.0%
TGATCCTAGCCATGAGAATG+AGG + chr7_3:73792919-73792938 None:intergenic 45.0%
ACCGTAATTCCATCCATGAC+GGG + chr7_3:73792944-73792963 None:intergenic 45.0%
GTCATGGATGGAATTACGGT+TGG - chr7_3:73792944-73792963 Msa1123060:CDS 45.0%
CATTCATATGTGTGCACTGC+AGG - chr7_3:73793155-73793174 Msa1123060:CDS 45.0%
! AGGTGTCACCCATGTGATGA+AGG - chr7_3:73789595-73789614 Msa1123060:intron 50.0%
ACCAAAGACCACGAAGAAGG+TGG - chr7_3:73789648-73789667 Msa1123060:intron 50.0%
TCCACCTTCTTCGTGGTCTT+TGG + chr7_3:73789652-73789671 None:intergenic 50.0%
GAACGAAACCAAAGACCACG+AGG - chr7_3:73789641-73789660 Msa1123060:intron 50.0%
GAAACCAAAGACCACGAGGA+AGG - chr7_3:73789687-73789706 Msa1123060:intron 50.0%
TCGTCGCGCTGTAAAAATGG+GGG + chr7_3:73791632-73791651 None:intergenic 50.0%
GTCGCAGATTTCGCGATTTC+AGG + chr7_3:73791865-73791884 None:intergenic 50.0%
TTGCAGTAGCACTTGCCTTG+TGG + chr7_3:73792601-73792620 None:intergenic 50.0%
GGGACTCTGTGATGATATGG+AGG + chr7_3:73792746-73792765 None:intergenic 50.0%
! CCCGCGTGGATTAAAAGTAC+TGG - chr7_3:73792763-73792782 Msa1123060:CDS 50.0%
AGCCTTAGACCTCATTGGCA+CGG - chr7_3:73792877-73792896 Msa1123060:CDS 50.0%
AACCGTGCCAATGAGGTCTA+AGG + chr7_3:73792882-73792901 None:intergenic 50.0%
TACGTTCAACCGTGCCAATG+AGG + chr7_3:73792889-73792908 None:intergenic 50.0%
TCGACCTCATTCTCATGGCT+AGG - chr7_3:73792912-73792931 Msa1123060:CDS 50.0%
GCCCGTCATGGATGGAATTA+CGG - chr7_3:73792940-73792959 Msa1123060:CDS 50.0%
! CTGCGCGATTTAGAATACCC+TGG - chr7_3:73793189-73793208 Msa1123060:CDS 50.0%
GAATACCCTGGCCAGATTGT+TGG - chr7_3:73793201-73793220 Msa1123060:CDS 50.0%
AGACACCAACAATCTGGCCA+GGG + chr7_3:73793209-73793228 None:intergenic 50.0%
GACGTGAGACACCAACAATC+TGG + chr7_3:73793215-73793234 None:intergenic 50.0%
ACCAAAGACCACGAGGAAGG+TGG - chr7_3:73789690-73789709 Msa1123060:intron 55.0%
TCCACCTTCCTCGTGGTCTT+TGG + chr7_3:73789694-73789713 None:intergenic 55.0%
TTTCGGTTCCACCTTCCTCG+TGG + chr7_3:73789701-73789720 None:intergenic 55.0%
GGCACCCCTGCATATGAAAC+TGG + chr7_3:73790880-73790899 None:intergenic 55.0%
CGCGGGACTCTGTGATGATA+TGG + chr7_3:73792749-73792768 None:intergenic 55.0%
TATCATCACAGAGTCCCGCG+TGG - chr7_3:73792749-73792768 Msa1123060:CDS 55.0%
AGGATCATGCCCGTCATGGA+TGG - chr7_3:73792932-73792951 Msa1123060:CDS 55.0%
GAGACACCAACAATCTGGCC+AGG + chr7_3:73793210-73793229 None:intergenic 55.0%
GGCTAGGATCATGCCCGTCA+TGG - chr7_3:73792928-73792947 Msa1123060:CDS 60.0%
TACGCGATCGCGGCCTTGAC+TGG - chr7_3:73791936-73791955 Msa1123060:intron 65.0%
ACGCGATCGCGGCCTTGACT+GGG - chr7_3:73791937-73791956 Msa1123060:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 73789319 73793362 73789319 ID=Msa1123060;Name=Msa1123060
chr7_3 mRNA 73789319 73793362 73789319 ID=Msa1123060-mRNA-1;Parent=Msa1123060;Name=Msa1123060-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|402
chr7_3 exon 73792542 73793362 73792542 ID=Msa1123060-mRNA-1:exon:19476;Parent=Msa1123060-mRNA-1
chr7_3 exon 73789720 73789921 73789720 ID=Msa1123060-mRNA-1:exon:19475;Parent=Msa1123060-mRNA-1
chr7_3 exon 73789319 73789504 73789319 ID=Msa1123060-mRNA-1:exon:19474;Parent=Msa1123060-mRNA-1
chr7_3 CDS 73792542 73793362 73792542 ID=Msa1123060-mRNA-1:cds;Parent=Msa1123060-mRNA-1
chr7_3 CDS 73789720 73789921 73789720 ID=Msa1123060-mRNA-1:cds;Parent=Msa1123060-mRNA-1
chr7_3 CDS 73789319 73789504 73789319 ID=Msa1123060-mRNA-1:cds;Parent=Msa1123060-mRNA-1
Gene Sequence

>Msa1123060

ATGTTGCAGAACAATCAAAATACTGAAGCCATGACGAAGGAACAGAAATTTGCTATCACTAAGGAGAAGATCAAAGGATACATGGAAAAAGCAAAAACGGCGCCACTCAACCTTCTCCATAACTTTGCTTGGCAATGCGTGATAGCTAAACATGCTCCACAATTTTATTCTGAAGAAGAGTTAGCACAAATAAAGAAACACAGTCAACTTGTTCTCCAAGAAACTCAAAATATTCCACAAAACACAGTGGAAGGAGAAGTAGCGAATACCAAGAAAAGGTGTCACCCATGTGATGAAGGTAGCATGTCTTATGCGGAAAGAAGAACGAAACCAAAGACCACGAAGAAGGTGGAACCAAATAAAAGAACGAAACCAAAGACCACGAGGAAGGTGGAACCGAAAAAACAAGATAAGAAAAATTTGGCGTTACCTCCGCCAATATTACCTATTAATGTCAAGAACAAGATCAAGGAGTTGAATGGCACTGATATCAGATATATCATGTCAAAGAAATTGTTTGCGTCAGATATCGATGAAGGCCAAAATCGTCTTTTAATGCCACTTAAAGAAGACGAACTTGGTTTTCTCACCAAGACAGAAAAGGAGACTTTAGATACAAAGGATAAAAACGGTAAACCGGTTGGTTTAGAAGTGATTGTGTTGGACCCTTATTTTAGAAGCTTCACAATGTGCTTCAAGAAGTGGAGAATGACTGATAAATGGGTTTACAGTCTTATACAAAATTGGAAACATGCTGTGAGGGGAAATGGTTTTGAAATAGGTCAAAAACTCAACATTTGGTCATTTAGGGTCAAGGACAAAGTCCCGCGTGGATTAAAAGTACTGGTTGTGGAAGATGATGATCTTGTTCGAATGGCTCATAGAGATATCTTGACATTACTTGGTGTGGAAACTCACGCAGTCAAAAATGGTAAAGAAGCCTTAGACCTCATTGGCACGGTTGAACGTAAATTCGACCTCATTCTCATGGCTAGGATCATGCCCGTCATGGATGGAATTACGGCAACAAAGAAGCTGCGCGATTTAGAATACCCTGGCCAGATTGTTGGTGTCTCACGTCGCCTTACTAATGATGAATATGCAGAATTTCGCAATGCAGGGCTAGATGATCTACATCATGAAGATGGAATACCCTTGCACTATCATATGTTGAAACTAATTTTGAAAAGGGTTCTTCCTGTCAACTAG

Protein sequence

>Msa1123060

MLQNNQNTEAMTKEQKFAITKEKIKGYMEKAKTAPLNLLHNFAWQCVIAKHAPQFYSEEELAQIKKHSQLVLQETQNIPQNTVEGEVANTKKRCHPCDEGSMSYAERRTKPKTTKKVEPNKRTKPKTTRKVEPKKQDKKNLALPPPILPINVKNKIKELNGTDIRYIMSKKLFASDIDEGQNRLLMPLKEDELGFLTKTEKETLDTKDKNGKPVGLEVIVLDPYFRSFTMCFKKWRMTDKWVYSLIQNWKHAVRGNGFEIGQKLNIWSFRVKDKVPRGLKVLVVEDDDLVRMAHRDILTLLGVETHAVKNGKEALDLIGTVERKFDLILMARIMPVMDGITATKKLRDLEYPGQIVGVSRRLTNDEYAEFRNAGLDDLHHEDGIPLHYHMLKLILKRVLPVN*