Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123160 | XP_003625472.1 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.30e-89 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123160 | sp|F4JZT3|ARR24_ARATH | 63.025 | 119 | 44 | 0 | 9 | 127 | 16 | 134 | 1.28e-47 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123160 | G7KZK5 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.10e-89 | 265 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1123160 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123160 | MtrunA17_Chr8g0364781 | 67.442 | 129 | 39 | 2 | 1 | 126 | 1 | 129 | 9.38e-55 | 168 |
| Msa1123160 | MtrunA17_Chr7g0262671 | 94.805 | 77 | 4 | 0 | 1 | 77 | 1 | 77 | 1.93e-49 | 153 |
| Msa1123160 | MtrunA17_Chr7g0262351 | 59.200 | 125 | 50 | 1 | 5 | 129 | 16 | 139 | 7.51e-46 | 145 |
| Msa1123160 | MtrunA17_Chr7g0262681 | 93.548 | 62 | 4 | 0 | 69 | 130 | 5 | 66 | 7.57e-37 | 120 |
| Msa1123160 | MtrunA17_Chr6g0472261 | 54.054 | 74 | 34 | 0 | 4 | 77 | 3 | 76 | 1.11e-21 | 82.0 |
| Msa1123160 | MtrunA17_Chr6g0451941 | 34.211 | 114 | 75 | 0 | 11 | 124 | 33 | 146 | 2.47e-18 | 75.9 |
| Msa1123160 | MtrunA17_Chr8g0392301 | 27.820 | 133 | 79 | 1 | 14 | 129 | 864 | 996 | 1.38e-12 | 63.5 |
| Msa1123160 | MtrunA17_Chr5g0447641 | 41.791 | 67 | 39 | 0 | 14 | 80 | 1077 | 1143 | 1.22e-11 | 60.8 |
| Msa1123160 | MtrunA17_Chr8g0371601 | 30.597 | 134 | 72 | 3 | 11 | 123 | 1029 | 1162 | 1.74e-11 | 60.1 |
| Msa1123160 | MtrunA17_Chr5g0405701 | 30.000 | 150 | 74 | 4 | 11 | 129 | 1050 | 1199 | 7.46e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123160 | AT5G26594.1 | 63.025 | 119 | 44 | 0 | 9 | 127 | 16 | 134 | 1.30e-48 | 152 |
| Msa1123160 | AT3G04280.1 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1123160 | AT3G04280.2 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1123160 | AT3G04280.3 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1123160 | AT2G01830.5 | 30.657 | 137 | 82 | 2 | 2 | 125 | 922 | 1058 | 4.61e-13 | 65.1 |
| Msa1123160 | AT2G01830.2 | 30.657 | 137 | 82 | 2 | 2 | 125 | 933 | 1069 | 5.04e-13 | 65.1 |
| Msa1123160 | AT2G01830.1 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1123160 | AT2G01830.4 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1123160 | AT2G01830.6 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1123160 | AT2G01830.3 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1123160 | AT5G35750.1 | 28.889 | 135 | 74 | 2 | 14 | 126 | 1038 | 1172 | 1.63e-12 | 63.5 |
Find 31 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGATGTTGAATAAATT+TGG | 0.144966 | 7_3:-73908729 | Msa1123160:CDS |
| GCAATACTTAGTTCCATTCT+TGG | 0.228362 | 7_3:-73907378 | Msa1123160:CDS |
| TATCCATGTCCATGAGAATT+AGG | 0.311699 | 7_3:+73908637 | None:intergenic |
| TGGATTGATCTTGCCAAGAA+TGG | 0.418939 | 7_3:+73907365 | None:intergenic |
| CACAACCAGTGCTGTTAGCT+TGG | 0.421611 | 7_3:+73908782 | None:intergenic |
| AAAATTCATGGAAGCTGGAT+TGG | 0.421768 | 7_3:-73907430 | Msa1123160:CDS |
| TGGTGTGTCATCACGCTCTA+TGG | 0.423024 | 7_3:-73907466 | Msa1123160:CDS |
| AGATGAAATACTAAAATTCA+TGG | 0.428022 | 7_3:-73907442 | Msa1123160:CDS |
| ACTAAGTATTGCATTGTTCA+AGG | 0.440010 | 7_3:+73907389 | None:intergenic |
| AAGAAGCAGTGGACATTCAT+TGG | 0.445266 | 7_3:-73908677 | Msa1123160:CDS |
| ATACTAAAATTCATGGAAGC+TGG | 0.448559 | 7_3:-73907435 | Msa1123160:CDS |
| GGTATTTGTAGCACAATTGT+TGG | 0.475026 | 7_3:-73907486 | Msa1123160:CDS |
| AAAATTTGACCTAATTCTCA+TGG | 0.477878 | 7_3:-73908646 | Msa1123160:CDS |
| AAAAGTCAAGGTGTGGAGAA+TGG | 0.478580 | 7_3:-73908702 | Msa1123160:CDS |
| ACAAAGGAACTTCGTGCAAT+GGG | 0.482431 | 7_3:-73907507 | Msa1123160:CDS |
| CAAGCTAACAGCACTGGTTG+TGG | 0.482562 | 7_3:-73908781 | Msa1123160:CDS |
| ACCTCAATGCCATTCATGAT+AGG | 0.492567 | 7_3:+73908612 | None:intergenic |
| CCTTGCATCCATCACACAGT+TGG | 0.511788 | 7_3:+73907345 | None:intergenic |
| AACAAAGGAACTTCGTGCAA+TGG | 0.518430 | 7_3:-73907508 | Msa1123160:CDS |
| ATGGATATGCCTATCATGAA+TGG | 0.542735 | 7_3:-73908621 | Msa1123160:CDS |
| CTAAGTATTGCATTGTTCAA+GGG | 0.546876 | 7_3:+73907390 | None:intergenic |
| CAGTGGACATTCATTGGCGT+GGG | 0.559565 | 7_3:-73908671 | Msa1123160:CDS |
| GCCTATCATGAATGGCATTG+AGG | 0.559799 | 7_3:-73908613 | Msa1123160:intron |
| TGTATCCAAGCTAACAGCAC+TGG | 0.575373 | 7_3:-73908787 | Msa1123160:CDS |
| TGTGTTTATATAGGCAACAA+AGG | 0.581181 | 7_3:-73907523 | Msa1123160:intron |
| AGATCAATCCAACTGTGTGA+TGG | 0.583988 | 7_3:-73907353 | None:intergenic |
| TGACCTAATTCTCATGGACA+TGG | 0.592027 | 7_3:-73908640 | Msa1123160:CDS |
| GCAGTGGACATTCATTGGCG+TGG | 0.597898 | 7_3:-73908672 | Msa1123160:CDS |
| AAATTTGGAGTCAAAAGTCA+AGG | 0.637368 | 7_3:-73908714 | Msa1123160:CDS |
| TGGAGTCAAAAGTCAAGGTG+TGG | 0.637883 | 7_3:-73908709 | Msa1123160:CDS |
| GGAGAATGGAAAAGAAGCAG+TGG | 0.653869 | 7_3:-73908688 | Msa1123160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAATATAAATAAAAA+AGG | + | chr7_3:73908608-73908627 | None:intergenic | 0.0% |
| !! | AATATAAATATAAATAAAAA+AGG | + | chr7_3:73908608-73908627 | None:intergenic | 0.0% |
| !! | TATAAAAATATATAAACTTG+GGG | + | chr7_3:73907796-73907815 | None:intergenic | 10.0% |
| !! | CATATAAAAATATATAAACT+TGG | + | chr7_3:73907798-73907817 | None:intergenic | 10.0% |
| !!! | AAAAAAATATTTTACTTTTG+AGG | + | chr7_3:73908162-73908181 | None:intergenic | 10.0% |
| !! | ACTAAAATTAACTATAAAAT+TGG | + | chr7_3:73908332-73908351 | None:intergenic | 10.0% |
| !!! | AATTTTATAGTTAATTTTAG+TGG | - | chr7_3:73908331-73908350 | Msa1123160:intron | 10.0% |
| !! | TATAAAAATATATAAACTTG+GGG | + | chr7_3:73907796-73907815 | None:intergenic | 10.0% |
| !! | CATATAAAAATATATAAACT+TGG | + | chr7_3:73907798-73907817 | None:intergenic | 10.0% |
| !!! | AAAAAAATATTTTACTTTTG+AGG | + | chr7_3:73908162-73908181 | None:intergenic | 10.0% |
| !! | ACTAAAATTAACTATAAAAT+TGG | + | chr7_3:73908332-73908351 | None:intergenic | 10.0% |
| !!! | AATTTTATAGTTAATTTTAG+TGG | - | chr7_3:73908331-73908350 | Msa1123160:intron | 10.0% |
| !!! | ATATTTATATAGTTTGTTAG+AGG | - | chr7_3:73908013-73908032 | Msa1123160:intron | 15.0% |
| !! | AAATTAACTATAAAATTGGA+GGG | + | chr7_3:73908328-73908347 | None:intergenic | 15.0% |
| !! | AAAATTAACTATAAAATTGG+AGG | + | chr7_3:73908329-73908348 | None:intergenic | 15.0% |
| !!! | ATATTTATATAGTTTGTTAG+AGG | - | chr7_3:73908013-73908032 | Msa1123160:intron | 15.0% |
| !! | AAATTAACTATAAAATTGGA+GGG | + | chr7_3:73908328-73908347 | None:intergenic | 15.0% |
| !! | AAAATTAACTATAAAATTGG+AGG | + | chr7_3:73908329-73908348 | None:intergenic | 15.0% |
| !! | CAAAAGATGTTGAATAAATT+TGG | - | chr7_3:73907434-73907453 | Msa1123160:CDS | 20.0% |
| !! | CTCTATAATTAATTAAGTAC+AGG | + | chr7_3:73907580-73907599 | None:intergenic | 20.0% |
| !! | TGATTATGGTCTATATAATT+TGG | - | chr7_3:73907816-73907835 | Msa1123160:intron | 20.0% |
| !! | GAAGAAAATGAAAATACTTA+TGG | - | chr7_3:73907891-73907910 | Msa1123160:intron | 20.0% |
| !! | AGATGAAATACTAAAATTCA+TGG | - | chr7_3:73908721-73908740 | Msa1123160:CDS | 20.0% |
| !! | CAAAAGATGTTGAATAAATT+TGG | - | chr7_3:73907434-73907453 | Msa1123160:CDS | 20.0% |
| !! | CTCTATAATTAATTAAGTAC+AGG | + | chr7_3:73907580-73907599 | None:intergenic | 20.0% |
| !! | TGATTATGGTCTATATAATT+TGG | - | chr7_3:73907816-73907835 | Msa1123160:intron | 20.0% |
| !! | GAAGAAAATGAAAATACTTA+TGG | - | chr7_3:73907891-73907910 | Msa1123160:intron | 20.0% |
| !! | AGATGAAATACTAAAATTCA+TGG | - | chr7_3:73908721-73908740 | Msa1123160:CDS | 20.0% |
| !! | ACATCTTTTGATGAATCTTT+CGG | + | chr7_3:73907424-73907443 | None:intergenic | 25.0% |
| ! | AAAATTTGACCTAATTCTCA+TGG | - | chr7_3:73907517-73907536 | Msa1123160:intron | 25.0% |
| ! | TGATATATGTACAACCATTT+GGG | - | chr7_3:73907603-73907622 | Msa1123160:intron | 25.0% |
| !! | TTCATTTTCTCTCTTTTCAT+TGG | - | chr7_3:73907643-73907662 | Msa1123160:intron | 25.0% |
| ! | GTCAAAAAGTTGTAATAAAG+TGG | - | chr7_3:73907736-73907755 | Msa1123160:intron | 25.0% |
| ! | TAGTGTACTATTATTGTTCA+TGG | - | chr7_3:73907869-73907888 | Msa1123160:intron | 25.0% |
| !!! | TTATATAGTTTGTTAGAGGA+AGG | - | chr7_3:73908017-73908036 | Msa1123160:intron | 25.0% |
| ! | TTAGAGGAAGGAAAAATTAT+TGG | - | chr7_3:73908029-73908048 | Msa1123160:intron | 25.0% |
| ! | ACTAAAGGAATTTAAGAATG+AGG | + | chr7_3:73908076-73908095 | None:intergenic | 25.0% |
| ! | TTAAATTCCTTTAGTGTTCA+GGG | - | chr7_3:73908081-73908100 | Msa1123160:intron | 25.0% |
| !!! | CTCATTTGATTTTGTTACTA+TGG | - | chr7_3:73908220-73908239 | Msa1123160:intron | 25.0% |
| !!! | GATAGTTTTATTGAGAAAGA+AGG | + | chr7_3:73908497-73908516 | None:intergenic | 25.0% |
| ! | TGTGTGTTATGTGTTTATAT+AGG | - | chr7_3:73908631-73908650 | Msa1123160:CDS | 25.0% |
| !! | ACATCTTTTGATGAATCTTT+CGG | + | chr7_3:73907424-73907443 | None:intergenic | 25.0% |
| ! | AAAATTTGACCTAATTCTCA+TGG | - | chr7_3:73907517-73907536 | Msa1123160:intron | 25.0% |
| ! | TGATATATGTACAACCATTT+GGG | - | chr7_3:73907603-73907622 | Msa1123160:intron | 25.0% |
| !! | TTCATTTTCTCTCTTTTCAT+TGG | - | chr7_3:73907643-73907662 | Msa1123160:intron | 25.0% |
| ! | GTCAAAAAGTTGTAATAAAG+TGG | - | chr7_3:73907736-73907755 | Msa1123160:intron | 25.0% |
| ! | TAGTGTACTATTATTGTTCA+TGG | - | chr7_3:73907869-73907888 | Msa1123160:intron | 25.0% |
| !!! | TTATATAGTTTGTTAGAGGA+AGG | - | chr7_3:73908017-73908036 | Msa1123160:intron | 25.0% |
| ! | TTAGAGGAAGGAAAAATTAT+TGG | - | chr7_3:73908029-73908048 | Msa1123160:intron | 25.0% |
| ! | ACTAAAGGAATTTAAGAATG+AGG | + | chr7_3:73908076-73908095 | None:intergenic | 25.0% |
| ! | TTAAATTCCTTTAGTGTTCA+GGG | - | chr7_3:73908081-73908100 | Msa1123160:intron | 25.0% |
| !!! | CTCATTTGATTTTGTTACTA+TGG | - | chr7_3:73908220-73908239 | Msa1123160:intron | 25.0% |
| !!! | GATAGTTTTATTGAGAAAGA+AGG | + | chr7_3:73908497-73908516 | None:intergenic | 25.0% |
| ! | TGTGTGTTATGTGTTTATAT+AGG | - | chr7_3:73908631-73908650 | Msa1123160:CDS | 25.0% |
| ! | AAATTTGGAGTCAAAAGTCA+AGG | - | chr7_3:73907449-73907468 | Msa1123160:CDS | 30.0% |
| GTGATATATGTACAACCATT+TGG | - | chr7_3:73907602-73907621 | Msa1123160:intron | 30.0% | |
| TGGTAACAAATATCGAATGT+TGG | - | chr7_3:73908049-73908068 | Msa1123160:intron | 30.0% | |
| CTTAAATTCCTTTAGTGTTC+AGG | - | chr7_3:73908080-73908099 | Msa1123160:intron | 30.0% | |
| TGAGTGAACTTTATAATACG+AGG | + | chr7_3:73908204-73908223 | None:intergenic | 30.0% | |
| TTAAGTCTCTCTAGATGTTT+AGG | - | chr7_3:73908374-73908393 | Msa1123160:intron | 30.0% | |
| AGGAAAATATGTTCACTCAT+TGG | - | chr7_3:73908442-73908461 | Msa1123160:intron | 30.0% | |
| AAAGAAGGAATTAGTACAAG+TGG | + | chr7_3:73908482-73908501 | None:intergenic | 30.0% | |
| TGTGTTTATATAGGCAACAA+AGG | - | chr7_3:73908640-73908659 | Msa1123160:CDS | 30.0% | |
| ATACTAAAATTCATGGAAGC+TGG | - | chr7_3:73908728-73908747 | Msa1123160:CDS | 30.0% | |
| ! | CTAAGTATTGCATTGTTCAA+GGG | + | chr7_3:73908776-73908795 | None:intergenic | 30.0% |
| ! | ACTAAGTATTGCATTGTTCA+AGG | + | chr7_3:73908777-73908796 | None:intergenic | 30.0% |
| ! | AAATTTGGAGTCAAAAGTCA+AGG | - | chr7_3:73907449-73907468 | Msa1123160:CDS | 30.0% |
| GTGATATATGTACAACCATT+TGG | - | chr7_3:73907602-73907621 | Msa1123160:intron | 30.0% | |
| TGGTAACAAATATCGAATGT+TGG | - | chr7_3:73908049-73908068 | Msa1123160:intron | 30.0% | |
| CTTAAATTCCTTTAGTGTTC+AGG | - | chr7_3:73908080-73908099 | Msa1123160:intron | 30.0% | |
| TGAGTGAACTTTATAATACG+AGG | + | chr7_3:73908204-73908223 | None:intergenic | 30.0% | |
| TTAAGTCTCTCTAGATGTTT+AGG | - | chr7_3:73908374-73908393 | Msa1123160:intron | 30.0% | |
| AGGAAAATATGTTCACTCAT+TGG | - | chr7_3:73908442-73908461 | Msa1123160:intron | 30.0% | |
| AAAGAAGGAATTAGTACAAG+TGG | + | chr7_3:73908482-73908501 | None:intergenic | 30.0% | |
| TGTGTTTATATAGGCAACAA+AGG | - | chr7_3:73908640-73908659 | Msa1123160:CDS | 30.0% | |
| ATACTAAAATTCATGGAAGC+TGG | - | chr7_3:73908728-73908747 | Msa1123160:CDS | 30.0% | |
| ! | CTAAGTATTGCATTGTTCAA+GGG | + | chr7_3:73908776-73908795 | None:intergenic | 30.0% |
| ! | ACTAAGTATTGCATTGTTCA+AGG | + | chr7_3:73908777-73908796 | None:intergenic | 30.0% |
| ! | AGCTTGGATACAAAGTTTTG+AGG | + | chr7_3:73907368-73907387 | None:intergenic | 35.0% |
| TATCCATGTCCATGAGAATT+AGG | + | chr7_3:73907529-73907548 | None:intergenic | 35.0% | |
| ATGGATATGCCTATCATGAA+TGG | - | chr7_3:73907542-73907561 | Msa1123160:intron | 35.0% | |
| TGTCATCAAATTGTCCCAAA+TGG | + | chr7_3:73907620-73907639 | None:intergenic | 35.0% | |
| AAATACTTATGGCCCAACAT+TGG | - | chr7_3:73907902-73907921 | Msa1123160:intron | 35.0% | |
| ! | AAAGTACCTTCACCAATGTT+GGG | + | chr7_3:73907917-73907936 | None:intergenic | 35.0% |
| !! | AAAAGTACCTTCACCAATGT+TGG | + | chr7_3:73907918-73907937 | None:intergenic | 35.0% |
| AAGTTGTGTCTTTACTTGCA+GGG | + | chr7_3:73908119-73908138 | None:intergenic | 35.0% | |
| AAAGTTGTGTCTTTACTTGC+AGG | + | chr7_3:73908120-73908139 | None:intergenic | 35.0% | |
| TGCAAGTAAAGACACAACTT+TGG | - | chr7_3:73908119-73908138 | Msa1123160:intron | 35.0% | |
| GAAGATGTAGCTTAGTTGTA+TGG | + | chr7_3:73908414-73908433 | None:intergenic | 35.0% | |
| ACAACTAAGCTACATCTTCA+AGG | - | chr7_3:73908415-73908434 | Msa1123160:intron | 35.0% | |
| CAACTAAGCTACATCTTCAA+GGG | - | chr7_3:73908416-73908435 | Msa1123160:intron | 35.0% | |
| GGTATTTGTAGCACAATTGT+TGG | - | chr7_3:73908677-73908696 | Msa1123160:CDS | 35.0% | |
| AAAATTCATGGAAGCTGGAT+TGG | - | chr7_3:73908733-73908752 | Msa1123160:CDS | 35.0% | |
| GCAATACTTAGTTCCATTCT+TGG | - | chr7_3:73908785-73908804 | Msa1123160:CDS | 35.0% | |
| ! | AGCTTGGATACAAAGTTTTG+AGG | + | chr7_3:73907368-73907387 | None:intergenic | 35.0% |
| TATCCATGTCCATGAGAATT+AGG | + | chr7_3:73907529-73907548 | None:intergenic | 35.0% | |
| ATGGATATGCCTATCATGAA+TGG | - | chr7_3:73907542-73907561 | Msa1123160:intron | 35.0% | |
| TGTCATCAAATTGTCCCAAA+TGG | + | chr7_3:73907620-73907639 | None:intergenic | 35.0% | |
| AAATACTTATGGCCCAACAT+TGG | - | chr7_3:73907902-73907921 | Msa1123160:intron | 35.0% | |
| ! | AAAGTACCTTCACCAATGTT+GGG | + | chr7_3:73907917-73907936 | None:intergenic | 35.0% |
| !! | AAAAGTACCTTCACCAATGT+TGG | + | chr7_3:73907918-73907937 | None:intergenic | 35.0% |
| AAGTTGTGTCTTTACTTGCA+GGG | + | chr7_3:73908119-73908138 | None:intergenic | 35.0% | |
| AAAGTTGTGTCTTTACTTGC+AGG | + | chr7_3:73908120-73908139 | None:intergenic | 35.0% | |
| TGCAAGTAAAGACACAACTT+TGG | - | chr7_3:73908119-73908138 | Msa1123160:intron | 35.0% | |
| GAAGATGTAGCTTAGTTGTA+TGG | + | chr7_3:73908414-73908433 | None:intergenic | 35.0% | |
| ACAACTAAGCTACATCTTCA+AGG | - | chr7_3:73908415-73908434 | Msa1123160:intron | 35.0% | |
| CAACTAAGCTACATCTTCAA+GGG | - | chr7_3:73908416-73908435 | Msa1123160:intron | 35.0% | |
| GGTATTTGTAGCACAATTGT+TGG | - | chr7_3:73908677-73908696 | Msa1123160:CDS | 35.0% | |
| AAAATTCATGGAAGCTGGAT+TGG | - | chr7_3:73908733-73908752 | Msa1123160:CDS | 35.0% | |
| GCAATACTTAGTTCCATTCT+TGG | - | chr7_3:73908785-73908804 | Msa1123160:CDS | 35.0% | |
| AAAAGTCAAGGTGTGGAGAA+TGG | - | chr7_3:73907461-73907480 | Msa1123160:CDS | 40.0% | |
| AAGAAGCAGTGGACATTCAT+TGG | - | chr7_3:73907486-73907505 | Msa1123160:CDS | 40.0% | |
| TGACCTAATTCTCATGGACA+TGG | - | chr7_3:73907523-73907542 | Msa1123160:intron | 40.0% | |
| ACCTCAATGCCATTCATGAT+AGG | + | chr7_3:73907554-73907573 | None:intergenic | 40.0% | |
| AACAAAGGAACTTCGTGCAA+TGG | - | chr7_3:73908655-73908674 | Msa1123160:CDS | 40.0% | |
| ACAAAGGAACTTCGTGCAAT+GGG | - | chr7_3:73908656-73908675 | Msa1123160:CDS | 40.0% | |
| TGGATTGATCTTGCCAAGAA+TGG | + | chr7_3:73908801-73908820 | None:intergenic | 40.0% | |
| AAAAGTCAAGGTGTGGAGAA+TGG | - | chr7_3:73907461-73907480 | Msa1123160:CDS | 40.0% | |
| AAGAAGCAGTGGACATTCAT+TGG | - | chr7_3:73907486-73907505 | Msa1123160:CDS | 40.0% | |
| TGACCTAATTCTCATGGACA+TGG | - | chr7_3:73907523-73907542 | Msa1123160:intron | 40.0% | |
| ACCTCAATGCCATTCATGAT+AGG | + | chr7_3:73907554-73907573 | None:intergenic | 40.0% | |
| AACAAAGGAACTTCGTGCAA+TGG | - | chr7_3:73908655-73908674 | Msa1123160:CDS | 40.0% | |
| ACAAAGGAACTTCGTGCAAT+GGG | - | chr7_3:73908656-73908675 | Msa1123160:CDS | 40.0% | |
| TGGATTGATCTTGCCAAGAA+TGG | + | chr7_3:73908801-73908820 | None:intergenic | 40.0% | |
| TGTATCCAAGCTAACAGCAC+TGG | - | chr7_3:73907376-73907395 | Msa1123160:CDS | 45.0% | |
| TGGAGTCAAAAGTCAAGGTG+TGG | - | chr7_3:73907454-73907473 | Msa1123160:CDS | 45.0% | |
| GGAGAATGGAAAAGAAGCAG+TGG | - | chr7_3:73907475-73907494 | Msa1123160:CDS | 45.0% | |
| GCCTATCATGAATGGCATTG+AGG | - | chr7_3:73907550-73907569 | Msa1123160:intron | 45.0% | |
| TTATGGCCCAACATTGGTGA+AGG | - | chr7_3:73907908-73907927 | Msa1123160:intron | 45.0% | |
| GGATCAACCCTGAACACTAA+AGG | + | chr7_3:73908091-73908110 | None:intergenic | 45.0% | |
| CTAAGCTACATCTTCAAGGG+AGG | - | chr7_3:73908419-73908438 | Msa1123160:intron | 45.0% | |
| TGTATCCAAGCTAACAGCAC+TGG | - | chr7_3:73907376-73907395 | Msa1123160:CDS | 45.0% | |
| TGGAGTCAAAAGTCAAGGTG+TGG | - | chr7_3:73907454-73907473 | Msa1123160:CDS | 45.0% | |
| GGAGAATGGAAAAGAAGCAG+TGG | - | chr7_3:73907475-73907494 | Msa1123160:CDS | 45.0% | |
| GCCTATCATGAATGGCATTG+AGG | - | chr7_3:73907550-73907569 | Msa1123160:intron | 45.0% | |
| TTATGGCCCAACATTGGTGA+AGG | - | chr7_3:73907908-73907927 | Msa1123160:intron | 45.0% | |
| GGATCAACCCTGAACACTAA+AGG | + | chr7_3:73908091-73908110 | None:intergenic | 45.0% | |
| CTAAGCTACATCTTCAAGGG+AGG | - | chr7_3:73908419-73908438 | Msa1123160:intron | 45.0% | |
| !! | ATATAAAAATATATAAACTT+GGG | + | chr7_3:73907797-73907816 | None:intergenic | 5.0% |
| !!! | TATATATTTTTATATGATTA+TGG | - | chr7_3:73907802-73907821 | Msa1123160:intron | 5.0% |
| !!! | AATAAATATTTATTTTTTGA+AGG | - | chr7_3:73907954-73907973 | Msa1123160:intron | 5.0% |
| !! | AGAAATAAATATTTATTTAT+AGG | - | chr7_3:73907981-73908000 | Msa1123160:intron | 5.0% |
| !!! | TTTTTAATAGTATTAATTTT+AGG | - | chr7_3:73908178-73908197 | Msa1123160:intron | 5.0% |
| !! | ATATAAAAATATATAAACTT+GGG | + | chr7_3:73907797-73907816 | None:intergenic | 5.0% |
| !!! | TATATATTTTTATATGATTA+TGG | - | chr7_3:73907802-73907821 | Msa1123160:intron | 5.0% |
| !!! | AATAAATATTTATTTTTTGA+AGG | - | chr7_3:73907954-73907973 | Msa1123160:intron | 5.0% |
| !! | AGAAATAAATATTTATTTAT+AGG | - | chr7_3:73907981-73908000 | Msa1123160:intron | 5.0% |
| !!! | TTTTTAATAGTATTAATTTT+AGG | - | chr7_3:73908178-73908197 | Msa1123160:intron | 5.0% |
| ! | CACAACCAGTGCTGTTAGCT+TGG | + | chr7_3:73907384-73907403 | None:intergenic | 50.0% |
| !! | CAAGCTAACAGCACTGGTTG+TGG | - | chr7_3:73907382-73907401 | Msa1123160:CDS | 50.0% |
| CAGTGGACATTCATTGGCGT+GGG | - | chr7_3:73907492-73907511 | Msa1123160:CDS | 50.0% | |
| GTCTTTACTTGCAGGGTCGT+TGG | + | chr7_3:73908112-73908131 | None:intergenic | 50.0% | |
| AGCTACATCTTCAAGGGAGG+AGG | - | chr7_3:73908422-73908441 | Msa1123160:intron | 50.0% | |
| TGGTGTGTCATCACGCTCTA+TGG | - | chr7_3:73908697-73908716 | Msa1123160:CDS | 50.0% | |
| ! | CACAACCAGTGCTGTTAGCT+TGG | + | chr7_3:73907384-73907403 | None:intergenic | 50.0% |
| !! | CAAGCTAACAGCACTGGTTG+TGG | - | chr7_3:73907382-73907401 | Msa1123160:CDS | 50.0% |
| CAGTGGACATTCATTGGCGT+GGG | - | chr7_3:73907492-73907511 | Msa1123160:CDS | 50.0% | |
| GTCTTTACTTGCAGGGTCGT+TGG | + | chr7_3:73908112-73908131 | None:intergenic | 50.0% | |
| AGCTACATCTTCAAGGGAGG+AGG | - | chr7_3:73908422-73908441 | Msa1123160:intron | 50.0% | |
| TGGTGTGTCATCACGCTCTA+TGG | - | chr7_3:73908697-73908716 | Msa1123160:CDS | 50.0% | |
| GCAGTGGACATTCATTGGCG+TGG | - | chr7_3:73907491-73907510 | Msa1123160:CDS | 55.0% | |
| GCAGTGGACATTCATTGGCG+TGG | - | chr7_3:73907491-73907510 | Msa1123160:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 73907356 | 73908829 | 73907356 | ID=Msa1123160;Name=Msa1123160 |
| chr7_3 | mRNA | 73907356 | 73908829 | 73907356 | ID=Msa1123160-mRNA-1;Parent=Msa1123160;Name=Msa1123160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|130 |
| chr7_3 | exon | 73908614 | 73908829 | 73908614 | ID=Msa1123160-mRNA-1:exon:19539;Parent=Msa1123160-mRNA-1 |
| chr7_3 | exon | 73907356 | 73907532 | 73907356 | ID=Msa1123160-mRNA-1:exon:19538;Parent=Msa1123160-mRNA-1 |
| chr7_3 | CDS | 73908614 | 73908829 | 73908614 | ID=Msa1123160-mRNA-1:cds;Parent=Msa1123160-mRNA-1 |
| chr7_3 | CDS | 73907356 | 73907532 | 73907356 | ID=Msa1123160-mRNA-1:cds;Parent=Msa1123160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
