Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123320 | XP_003625472.1 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.30e-89 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123320 | sp|F4JZT3|ARR24_ARATH | 63.025 | 119 | 44 | 0 | 9 | 127 | 16 | 134 | 1.28e-47 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123320 | G7KZK5 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.10e-89 | 265 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1123320 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123320 | MtrunA17_Chr8g0364781 | 67.442 | 129 | 39 | 2 | 1 | 126 | 1 | 129 | 9.38e-55 | 168 |
| Msa1123320 | MtrunA17_Chr7g0262671 | 94.805 | 77 | 4 | 0 | 1 | 77 | 1 | 77 | 1.93e-49 | 153 |
| Msa1123320 | MtrunA17_Chr7g0262351 | 59.200 | 125 | 50 | 1 | 5 | 129 | 16 | 139 | 7.51e-46 | 145 |
| Msa1123320 | MtrunA17_Chr7g0262681 | 93.548 | 62 | 4 | 0 | 69 | 130 | 5 | 66 | 7.57e-37 | 120 |
| Msa1123320 | MtrunA17_Chr6g0472261 | 54.054 | 74 | 34 | 0 | 4 | 77 | 3 | 76 | 1.11e-21 | 82.0 |
| Msa1123320 | MtrunA17_Chr6g0451941 | 34.211 | 114 | 75 | 0 | 11 | 124 | 33 | 146 | 2.47e-18 | 75.9 |
| Msa1123320 | MtrunA17_Chr8g0392301 | 27.820 | 133 | 79 | 1 | 14 | 129 | 864 | 996 | 1.38e-12 | 63.5 |
| Msa1123320 | MtrunA17_Chr5g0447641 | 41.791 | 67 | 39 | 0 | 14 | 80 | 1077 | 1143 | 1.22e-11 | 60.8 |
| Msa1123320 | MtrunA17_Chr8g0371601 | 30.597 | 134 | 72 | 3 | 11 | 123 | 1029 | 1162 | 1.74e-11 | 60.1 |
| Msa1123320 | MtrunA17_Chr5g0405701 | 30.000 | 150 | 74 | 4 | 11 | 129 | 1050 | 1199 | 7.46e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123320 | AT5G26594.1 | 63.025 | 119 | 44 | 0 | 9 | 127 | 16 | 134 | 1.30e-48 | 152 |
| Msa1123320 | AT3G04280.1 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1123320 | AT3G04280.2 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1123320 | AT3G04280.3 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1123320 | AT2G01830.5 | 30.657 | 137 | 82 | 2 | 2 | 125 | 922 | 1058 | 4.61e-13 | 65.1 |
| Msa1123320 | AT2G01830.2 | 30.657 | 137 | 82 | 2 | 2 | 125 | 933 | 1069 | 5.04e-13 | 65.1 |
| Msa1123320 | AT2G01830.1 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1123320 | AT2G01830.4 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1123320 | AT2G01830.6 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1123320 | AT2G01830.3 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1123320 | AT5G35750.1 | 28.889 | 135 | 74 | 2 | 14 | 126 | 1038 | 1172 | 1.63e-12 | 63.5 |
Find 31 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGATGTTGAATAAATT+TGG | 0.144966 | 7_3:+74207623 | Msa1123320:CDS |
| GCAATACTTAGTTCCATTCT+TGG | 0.228362 | 7_3:+74208974 | Msa1123320:CDS |
| TATCCATGTCCATGAGAATT+AGG | 0.311699 | 7_3:-74207715 | None:intergenic |
| TGGATTGATCTTGCCAAGAA+TGG | 0.418939 | 7_3:-74208987 | None:intergenic |
| CACAACCAGTGCTGTTAGCT+TGG | 0.421611 | 7_3:-74207570 | None:intergenic |
| AAAATTCATGGAAGCTGGAT+TGG | 0.421768 | 7_3:+74208922 | Msa1123320:CDS |
| TGGTGTGTCATCACGCTCTA+TGG | 0.423024 | 7_3:+74208886 | Msa1123320:CDS |
| AGATGAAATACTAAAATTCA+TGG | 0.428022 | 7_3:+74208910 | Msa1123320:CDS |
| ACTAAGTATTGCATTGTTCA+AGG | 0.440010 | 7_3:-74208963 | None:intergenic |
| AAGAAGCAGTGGACATTCAT+TGG | 0.445266 | 7_3:+74207675 | Msa1123320:CDS |
| ATACTAAAATTCATGGAAGC+TGG | 0.448559 | 7_3:+74208917 | Msa1123320:CDS |
| GGTATTTGTAGCACAATTGT+TGG | 0.475026 | 7_3:+74208866 | Msa1123320:CDS |
| AAAATTTGACCTAATTCTCA+TGG | 0.477878 | 7_3:+74207706 | Msa1123320:CDS |
| AAAAGTCAAGGTGTGGAGAA+TGG | 0.478580 | 7_3:+74207650 | Msa1123320:CDS |
| ACAAAGGAACTTCGTGCAAT+GGG | 0.482431 | 7_3:+74208845 | Msa1123320:CDS |
| CAAGCTAACAGCACTGGTTG+TGG | 0.482562 | 7_3:+74207571 | Msa1123320:CDS |
| ACCTCAATGCCATTCATGAT+AGG | 0.492567 | 7_3:-74207740 | None:intergenic |
| CCTTGCATCCATCACACAGT+TGG | 0.511788 | 7_3:-74209007 | None:intergenic |
| AACAAAGGAACTTCGTGCAA+TGG | 0.518430 | 7_3:+74208844 | Msa1123320:CDS |
| ATGGATATGCCTATCATGAA+TGG | 0.542735 | 7_3:+74207731 | Msa1123320:CDS |
| CTAAGTATTGCATTGTTCAA+GGG | 0.546876 | 7_3:-74208962 | None:intergenic |
| CAGTGGACATTCATTGGCGT+GGG | 0.559565 | 7_3:+74207681 | Msa1123320:CDS |
| GCCTATCATGAATGGCATTG+AGG | 0.559799 | 7_3:+74207739 | Msa1123320:CDS |
| TGTATCCAAGCTAACAGCAC+TGG | 0.575373 | 7_3:+74207565 | Msa1123320:CDS |
| TGTGTTTATATAGGCAACAA+AGG | 0.581181 | 7_3:+74208829 | Msa1123320:intron |
| AGATCAATCCAACTGTGTGA+TGG | 0.583988 | 7_3:+74208999 | Msa1123320:CDS |
| TGACCTAATTCTCATGGACA+TGG | 0.592027 | 7_3:+74207712 | Msa1123320:CDS |
| GCAGTGGACATTCATTGGCG+TGG | 0.597898 | 7_3:+74207680 | Msa1123320:CDS |
| AAATTTGGAGTCAAAAGTCA+AGG | 0.637368 | 7_3:+74207638 | Msa1123320:CDS |
| TGGAGTCAAAAGTCAAGGTG+TGG | 0.637883 | 7_3:+74207643 | Msa1123320:CDS |
| GGAGAATGGAAAAGAAGCAG+TGG | 0.653869 | 7_3:+74207664 | Msa1123320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAATATAAATAAAAA+AGG | - | chr7_3:74208797-74208816 | None:intergenic | 0.0% |
| !! | AATATAAATATAAATAAAAA+AGG | - | chr7_3:74208797-74208816 | None:intergenic | 0.0% |
| !! | TATAAAAATATATAAACTTG+GGG | - | chr7_3:74207985-74208004 | None:intergenic | 10.0% |
| !! | CATATAAAAATATATAAACT+TGG | - | chr7_3:74207987-74208006 | None:intergenic | 10.0% |
| !!! | AAAAAAATATTTTACTTTTG+AGG | - | chr7_3:74208351-74208370 | None:intergenic | 10.0% |
| !! | ACTAAAATTAACTATAAAAT+TGG | - | chr7_3:74208521-74208540 | None:intergenic | 10.0% |
| !!! | AATTTTATAGTTAATTTTAG+TGG | + | chr7_3:74208520-74208539 | Msa1123320:intron | 10.0% |
| !! | TATAAAAATATATAAACTTG+GGG | - | chr7_3:74207985-74208004 | None:intergenic | 10.0% |
| !! | CATATAAAAATATATAAACT+TGG | - | chr7_3:74207987-74208006 | None:intergenic | 10.0% |
| !!! | AAAAAAATATTTTACTTTTG+AGG | - | chr7_3:74208351-74208370 | None:intergenic | 10.0% |
| !! | ACTAAAATTAACTATAAAAT+TGG | - | chr7_3:74208521-74208540 | None:intergenic | 10.0% |
| !!! | AATTTTATAGTTAATTTTAG+TGG | + | chr7_3:74208520-74208539 | Msa1123320:intron | 10.0% |
| !!! | ATATTTATATAGTTTGTTAG+AGG | + | chr7_3:74208202-74208221 | Msa1123320:intron | 15.0% |
| !! | AAATTAACTATAAAATTGGA+GGG | - | chr7_3:74208517-74208536 | None:intergenic | 15.0% |
| !! | AAAATTAACTATAAAATTGG+AGG | - | chr7_3:74208518-74208537 | None:intergenic | 15.0% |
| !!! | ATATTTATATAGTTTGTTAG+AGG | + | chr7_3:74208202-74208221 | Msa1123320:intron | 15.0% |
| !! | AAATTAACTATAAAATTGGA+GGG | - | chr7_3:74208517-74208536 | None:intergenic | 15.0% |
| !! | AAAATTAACTATAAAATTGG+AGG | - | chr7_3:74208518-74208537 | None:intergenic | 15.0% |
| !! | CAAAAGATGTTGAATAAATT+TGG | + | chr7_3:74207623-74207642 | Msa1123320:CDS | 20.0% |
| !! | CTCTATAATTAATTAAGTAC+AGG | - | chr7_3:74207769-74207788 | None:intergenic | 20.0% |
| !! | TGATTATGGTCTATATAATT+TGG | + | chr7_3:74208005-74208024 | Msa1123320:intron | 20.0% |
| !! | GAAGAAAATGAAAATACTTA+TGG | + | chr7_3:74208080-74208099 | Msa1123320:intron | 20.0% |
| !! | AGATGAAATACTAAAATTCA+TGG | + | chr7_3:74208910-74208929 | Msa1123320:CDS | 20.0% |
| !! | CAAAAGATGTTGAATAAATT+TGG | + | chr7_3:74207623-74207642 | Msa1123320:CDS | 20.0% |
| !! | CTCTATAATTAATTAAGTAC+AGG | - | chr7_3:74207769-74207788 | None:intergenic | 20.0% |
| !! | TGATTATGGTCTATATAATT+TGG | + | chr7_3:74208005-74208024 | Msa1123320:intron | 20.0% |
| !! | GAAGAAAATGAAAATACTTA+TGG | + | chr7_3:74208080-74208099 | Msa1123320:intron | 20.0% |
| !! | AGATGAAATACTAAAATTCA+TGG | + | chr7_3:74208910-74208929 | Msa1123320:CDS | 20.0% |
| !! | ACATCTTTTGATGAATCTTT+CGG | - | chr7_3:74207613-74207632 | None:intergenic | 25.0% |
| ! | AAAATTTGACCTAATTCTCA+TGG | + | chr7_3:74207706-74207725 | Msa1123320:CDS | 25.0% |
| ! | TGATATATGTACAACCATTT+GGG | + | chr7_3:74207792-74207811 | Msa1123320:intron | 25.0% |
| !! | TTCATTTTCTCTCTTTTCAT+TGG | + | chr7_3:74207832-74207851 | Msa1123320:intron | 25.0% |
| ! | GTCAAAAAGTTGTAATAAAG+TGG | + | chr7_3:74207925-74207944 | Msa1123320:intron | 25.0% |
| ! | TAGTGTACTATTATTGTTCA+TGG | + | chr7_3:74208058-74208077 | Msa1123320:intron | 25.0% |
| !!! | TTATATAGTTTGTTAGAGGA+AGG | + | chr7_3:74208206-74208225 | Msa1123320:intron | 25.0% |
| ! | ACTAAAGGAATTTAAGAATG+AGG | - | chr7_3:74208265-74208284 | None:intergenic | 25.0% |
| ! | TTAAATTCCTTTAGTGTTCA+GGG | + | chr7_3:74208270-74208289 | Msa1123320:intron | 25.0% |
| !!! | CTCATTTGATTTTGTTACTA+TGG | + | chr7_3:74208409-74208428 | Msa1123320:intron | 25.0% |
| !!! | GATAGTTTTATTGAGAAAGA+AGG | - | chr7_3:74208686-74208705 | None:intergenic | 25.0% |
| ! | TGTGTGTTATGTGTTTATAT+AGG | + | chr7_3:74208820-74208839 | Msa1123320:intron | 25.0% |
| !! | ACATCTTTTGATGAATCTTT+CGG | - | chr7_3:74207613-74207632 | None:intergenic | 25.0% |
| ! | AAAATTTGACCTAATTCTCA+TGG | + | chr7_3:74207706-74207725 | Msa1123320:CDS | 25.0% |
| ! | TGATATATGTACAACCATTT+GGG | + | chr7_3:74207792-74207811 | Msa1123320:intron | 25.0% |
| !! | TTCATTTTCTCTCTTTTCAT+TGG | + | chr7_3:74207832-74207851 | Msa1123320:intron | 25.0% |
| ! | GTCAAAAAGTTGTAATAAAG+TGG | + | chr7_3:74207925-74207944 | Msa1123320:intron | 25.0% |
| ! | TAGTGTACTATTATTGTTCA+TGG | + | chr7_3:74208058-74208077 | Msa1123320:intron | 25.0% |
| !!! | TTATATAGTTTGTTAGAGGA+AGG | + | chr7_3:74208206-74208225 | Msa1123320:intron | 25.0% |
| ! | ACTAAAGGAATTTAAGAATG+AGG | - | chr7_3:74208265-74208284 | None:intergenic | 25.0% |
| ! | TTAAATTCCTTTAGTGTTCA+GGG | + | chr7_3:74208270-74208289 | Msa1123320:intron | 25.0% |
| !!! | CTCATTTGATTTTGTTACTA+TGG | + | chr7_3:74208409-74208428 | Msa1123320:intron | 25.0% |
| !!! | GATAGTTTTATTGAGAAAGA+AGG | - | chr7_3:74208686-74208705 | None:intergenic | 25.0% |
| ! | TGTGTGTTATGTGTTTATAT+AGG | + | chr7_3:74208820-74208839 | Msa1123320:intron | 25.0% |
| ! | AAATTTGGAGTCAAAAGTCA+AGG | + | chr7_3:74207638-74207657 | Msa1123320:CDS | 30.0% |
| GTGATATATGTACAACCATT+TGG | + | chr7_3:74207791-74207810 | Msa1123320:intron | 30.0% | |
| TTAGAGGAAGGAGAAATTAT+TGG | + | chr7_3:74208218-74208237 | Msa1123320:intron | 30.0% | |
| TGGTAACAAATATCGAATGT+TGG | + | chr7_3:74208238-74208257 | Msa1123320:intron | 30.0% | |
| CTTAAATTCCTTTAGTGTTC+AGG | + | chr7_3:74208269-74208288 | Msa1123320:intron | 30.0% | |
| TGAGTGAACTTTATAATACG+AGG | - | chr7_3:74208393-74208412 | None:intergenic | 30.0% | |
| TTAAGTCTCTCTAGATGTTT+AGG | + | chr7_3:74208563-74208582 | Msa1123320:intron | 30.0% | |
| AGGAAAATATGTTCACTCAT+TGG | + | chr7_3:74208631-74208650 | Msa1123320:intron | 30.0% | |
| AAAGAAGGAATTAGTACAAG+TGG | - | chr7_3:74208671-74208690 | None:intergenic | 30.0% | |
| TGTGTTTATATAGGCAACAA+AGG | + | chr7_3:74208829-74208848 | Msa1123320:intron | 30.0% | |
| ATACTAAAATTCATGGAAGC+TGG | + | chr7_3:74208917-74208936 | Msa1123320:CDS | 30.0% | |
| ! | CTAAGTATTGCATTGTTCAA+GGG | - | chr7_3:74208965-74208984 | None:intergenic | 30.0% |
| ! | ACTAAGTATTGCATTGTTCA+AGG | - | chr7_3:74208966-74208985 | None:intergenic | 30.0% |
| ! | AAATTTGGAGTCAAAAGTCA+AGG | + | chr7_3:74207638-74207657 | Msa1123320:CDS | 30.0% |
| GTGATATATGTACAACCATT+TGG | + | chr7_3:74207791-74207810 | Msa1123320:intron | 30.0% | |
| TTAGAGGAAGGAGAAATTAT+TGG | + | chr7_3:74208218-74208237 | Msa1123320:intron | 30.0% | |
| TGGTAACAAATATCGAATGT+TGG | + | chr7_3:74208238-74208257 | Msa1123320:intron | 30.0% | |
| CTTAAATTCCTTTAGTGTTC+AGG | + | chr7_3:74208269-74208288 | Msa1123320:intron | 30.0% | |
| TGAGTGAACTTTATAATACG+AGG | - | chr7_3:74208393-74208412 | None:intergenic | 30.0% | |
| TTAAGTCTCTCTAGATGTTT+AGG | + | chr7_3:74208563-74208582 | Msa1123320:intron | 30.0% | |
| AGGAAAATATGTTCACTCAT+TGG | + | chr7_3:74208631-74208650 | Msa1123320:intron | 30.0% | |
| AAAGAAGGAATTAGTACAAG+TGG | - | chr7_3:74208671-74208690 | None:intergenic | 30.0% | |
| TGTGTTTATATAGGCAACAA+AGG | + | chr7_3:74208829-74208848 | Msa1123320:intron | 30.0% | |
| ATACTAAAATTCATGGAAGC+TGG | + | chr7_3:74208917-74208936 | Msa1123320:CDS | 30.0% | |
| ! | CTAAGTATTGCATTGTTCAA+GGG | - | chr7_3:74208965-74208984 | None:intergenic | 30.0% |
| ! | ACTAAGTATTGCATTGTTCA+AGG | - | chr7_3:74208966-74208985 | None:intergenic | 30.0% |
| ! | AGCTTGGATACAAAGTTTTG+AGG | - | chr7_3:74207557-74207576 | None:intergenic | 35.0% |
| TATCCATGTCCATGAGAATT+AGG | - | chr7_3:74207718-74207737 | None:intergenic | 35.0% | |
| ATGGATATGCCTATCATGAA+TGG | + | chr7_3:74207731-74207750 | Msa1123320:CDS | 35.0% | |
| TGTCATCAAATTGTCCCAAA+TGG | - | chr7_3:74207809-74207828 | None:intergenic | 35.0% | |
| AAATACTTATGGCCCAACAT+TGG | + | chr7_3:74208091-74208110 | Msa1123320:intron | 35.0% | |
| ! | AAAGTACCTTCACCAATGTT+GGG | - | chr7_3:74208106-74208125 | None:intergenic | 35.0% |
| !! | AAAAGTACCTTCACCAATGT+TGG | - | chr7_3:74208107-74208126 | None:intergenic | 35.0% |
| AAGTTGTGTCTTTACTTGCA+GGG | - | chr7_3:74208308-74208327 | None:intergenic | 35.0% | |
| AAAGTTGTGTCTTTACTTGC+AGG | - | chr7_3:74208309-74208328 | None:intergenic | 35.0% | |
| TGCAAGTAAAGACACAACTT+TGG | + | chr7_3:74208308-74208327 | Msa1123320:intron | 35.0% | |
| GAAGATGTAGCTTAGTTGTA+TGG | - | chr7_3:74208603-74208622 | None:intergenic | 35.0% | |
| ACAACTAAGCTACATCTTCA+AGG | + | chr7_3:74208604-74208623 | Msa1123320:intron | 35.0% | |
| CAACTAAGCTACATCTTCAA+GGG | + | chr7_3:74208605-74208624 | Msa1123320:intron | 35.0% | |
| GGTATTTGTAGCACAATTGT+TGG | + | chr7_3:74208866-74208885 | Msa1123320:CDS | 35.0% | |
| AAAATTCATGGAAGCTGGAT+TGG | + | chr7_3:74208922-74208941 | Msa1123320:CDS | 35.0% | |
| GCAATACTTAGTTCCATTCT+TGG | + | chr7_3:74208974-74208993 | Msa1123320:CDS | 35.0% | |
| ! | AGCTTGGATACAAAGTTTTG+AGG | - | chr7_3:74207557-74207576 | None:intergenic | 35.0% |
| TATCCATGTCCATGAGAATT+AGG | - | chr7_3:74207718-74207737 | None:intergenic | 35.0% | |
| ATGGATATGCCTATCATGAA+TGG | + | chr7_3:74207731-74207750 | Msa1123320:CDS | 35.0% | |
| TGTCATCAAATTGTCCCAAA+TGG | - | chr7_3:74207809-74207828 | None:intergenic | 35.0% | |
| AAATACTTATGGCCCAACAT+TGG | + | chr7_3:74208091-74208110 | Msa1123320:intron | 35.0% | |
| ! | AAAGTACCTTCACCAATGTT+GGG | - | chr7_3:74208106-74208125 | None:intergenic | 35.0% |
| !! | AAAAGTACCTTCACCAATGT+TGG | - | chr7_3:74208107-74208126 | None:intergenic | 35.0% |
| AAGTTGTGTCTTTACTTGCA+GGG | - | chr7_3:74208308-74208327 | None:intergenic | 35.0% | |
| AAAGTTGTGTCTTTACTTGC+AGG | - | chr7_3:74208309-74208328 | None:intergenic | 35.0% | |
| TGCAAGTAAAGACACAACTT+TGG | + | chr7_3:74208308-74208327 | Msa1123320:intron | 35.0% | |
| GAAGATGTAGCTTAGTTGTA+TGG | - | chr7_3:74208603-74208622 | None:intergenic | 35.0% | |
| ACAACTAAGCTACATCTTCA+AGG | + | chr7_3:74208604-74208623 | Msa1123320:intron | 35.0% | |
| CAACTAAGCTACATCTTCAA+GGG | + | chr7_3:74208605-74208624 | Msa1123320:intron | 35.0% | |
| GGTATTTGTAGCACAATTGT+TGG | + | chr7_3:74208866-74208885 | Msa1123320:CDS | 35.0% | |
| AAAATTCATGGAAGCTGGAT+TGG | + | chr7_3:74208922-74208941 | Msa1123320:CDS | 35.0% | |
| GCAATACTTAGTTCCATTCT+TGG | + | chr7_3:74208974-74208993 | Msa1123320:CDS | 35.0% | |
| AAAAGTCAAGGTGTGGAGAA+TGG | + | chr7_3:74207650-74207669 | Msa1123320:CDS | 40.0% | |
| AAGAAGCAGTGGACATTCAT+TGG | + | chr7_3:74207675-74207694 | Msa1123320:CDS | 40.0% | |
| TGACCTAATTCTCATGGACA+TGG | + | chr7_3:74207712-74207731 | Msa1123320:CDS | 40.0% | |
| ACCTCAATGCCATTCATGAT+AGG | - | chr7_3:74207743-74207762 | None:intergenic | 40.0% | |
| AACAAAGGAACTTCGTGCAA+TGG | + | chr7_3:74208844-74208863 | Msa1123320:CDS | 40.0% | |
| ACAAAGGAACTTCGTGCAAT+GGG | + | chr7_3:74208845-74208864 | Msa1123320:CDS | 40.0% | |
| TGGATTGATCTTGCCAAGAA+TGG | - | chr7_3:74208990-74209009 | None:intergenic | 40.0% | |
| AAAAGTCAAGGTGTGGAGAA+TGG | + | chr7_3:74207650-74207669 | Msa1123320:CDS | 40.0% | |
| AAGAAGCAGTGGACATTCAT+TGG | + | chr7_3:74207675-74207694 | Msa1123320:CDS | 40.0% | |
| TGACCTAATTCTCATGGACA+TGG | + | chr7_3:74207712-74207731 | Msa1123320:CDS | 40.0% | |
| ACCTCAATGCCATTCATGAT+AGG | - | chr7_3:74207743-74207762 | None:intergenic | 40.0% | |
| AACAAAGGAACTTCGTGCAA+TGG | + | chr7_3:74208844-74208863 | Msa1123320:CDS | 40.0% | |
| ACAAAGGAACTTCGTGCAAT+GGG | + | chr7_3:74208845-74208864 | Msa1123320:CDS | 40.0% | |
| TGGATTGATCTTGCCAAGAA+TGG | - | chr7_3:74208990-74209009 | None:intergenic | 40.0% | |
| TGTATCCAAGCTAACAGCAC+TGG | + | chr7_3:74207565-74207584 | Msa1123320:CDS | 45.0% | |
| TGGAGTCAAAAGTCAAGGTG+TGG | + | chr7_3:74207643-74207662 | Msa1123320:CDS | 45.0% | |
| GGAGAATGGAAAAGAAGCAG+TGG | + | chr7_3:74207664-74207683 | Msa1123320:CDS | 45.0% | |
| GCCTATCATGAATGGCATTG+AGG | + | chr7_3:74207739-74207758 | Msa1123320:CDS | 45.0% | |
| TTATGGCCCAACATTGGTGA+AGG | + | chr7_3:74208097-74208116 | Msa1123320:intron | 45.0% | |
| GGATCAACCCTGAACACTAA+AGG | - | chr7_3:74208280-74208299 | None:intergenic | 45.0% | |
| CTAAGCTACATCTTCAAGGG+AGG | + | chr7_3:74208608-74208627 | Msa1123320:intron | 45.0% | |
| TGTATCCAAGCTAACAGCAC+TGG | + | chr7_3:74207565-74207584 | Msa1123320:CDS | 45.0% | |
| TGGAGTCAAAAGTCAAGGTG+TGG | + | chr7_3:74207643-74207662 | Msa1123320:CDS | 45.0% | |
| GGAGAATGGAAAAGAAGCAG+TGG | + | chr7_3:74207664-74207683 | Msa1123320:CDS | 45.0% | |
| GCCTATCATGAATGGCATTG+AGG | + | chr7_3:74207739-74207758 | Msa1123320:CDS | 45.0% | |
| TTATGGCCCAACATTGGTGA+AGG | + | chr7_3:74208097-74208116 | Msa1123320:intron | 45.0% | |
| GGATCAACCCTGAACACTAA+AGG | - | chr7_3:74208280-74208299 | None:intergenic | 45.0% | |
| CTAAGCTACATCTTCAAGGG+AGG | + | chr7_3:74208608-74208627 | Msa1123320:intron | 45.0% | |
| !! | ATATAAAAATATATAAACTT+GGG | - | chr7_3:74207986-74208005 | None:intergenic | 5.0% |
| !!! | TATATATTTTTATATGATTA+TGG | + | chr7_3:74207991-74208010 | Msa1123320:intron | 5.0% |
| !!! | AATAAATATTTATTTTTTGA+AGG | + | chr7_3:74208143-74208162 | Msa1123320:intron | 5.0% |
| !! | AGAAATAAATATTTATTTAT+AGG | + | chr7_3:74208170-74208189 | Msa1123320:intron | 5.0% |
| !!! | TTTTTAATAGTATTAATTTT+AGG | + | chr7_3:74208367-74208386 | Msa1123320:intron | 5.0% |
| !! | ATATAAAAATATATAAACTT+GGG | - | chr7_3:74207986-74208005 | None:intergenic | 5.0% |
| !!! | TATATATTTTTATATGATTA+TGG | + | chr7_3:74207991-74208010 | Msa1123320:intron | 5.0% |
| !!! | AATAAATATTTATTTTTTGA+AGG | + | chr7_3:74208143-74208162 | Msa1123320:intron | 5.0% |
| !! | AGAAATAAATATTTATTTAT+AGG | + | chr7_3:74208170-74208189 | Msa1123320:intron | 5.0% |
| !!! | TTTTTAATAGTATTAATTTT+AGG | + | chr7_3:74208367-74208386 | Msa1123320:intron | 5.0% |
| ! | CACAACCAGTGCTGTTAGCT+TGG | - | chr7_3:74207573-74207592 | None:intergenic | 50.0% |
| !! | CAAGCTAACAGCACTGGTTG+TGG | + | chr7_3:74207571-74207590 | Msa1123320:CDS | 50.0% |
| CAGTGGACATTCATTGGCGT+GGG | + | chr7_3:74207681-74207700 | Msa1123320:CDS | 50.0% | |
| GTCTTTACTTGCAGGGTCGT+TGG | - | chr7_3:74208301-74208320 | None:intergenic | 50.0% | |
| AGCTACATCTTCAAGGGAGG+AGG | + | chr7_3:74208611-74208630 | Msa1123320:intron | 50.0% | |
| TGGTGTGTCATCACGCTCTA+TGG | + | chr7_3:74208886-74208905 | Msa1123320:CDS | 50.0% | |
| ! | CACAACCAGTGCTGTTAGCT+TGG | - | chr7_3:74207573-74207592 | None:intergenic | 50.0% |
| !! | CAAGCTAACAGCACTGGTTG+TGG | + | chr7_3:74207571-74207590 | Msa1123320:CDS | 50.0% |
| CAGTGGACATTCATTGGCGT+GGG | + | chr7_3:74207681-74207700 | Msa1123320:CDS | 50.0% | |
| GTCTTTACTTGCAGGGTCGT+TGG | - | chr7_3:74208301-74208320 | None:intergenic | 50.0% | |
| AGCTACATCTTCAAGGGAGG+AGG | + | chr7_3:74208611-74208630 | Msa1123320:intron | 50.0% | |
| TGGTGTGTCATCACGCTCTA+TGG | + | chr7_3:74208886-74208905 | Msa1123320:CDS | 50.0% | |
| GCAGTGGACATTCATTGGCG+TGG | + | chr7_3:74207680-74207699 | Msa1123320:CDS | 55.0% | |
| GCAGTGGACATTCATTGGCG+TGG | + | chr7_3:74207680-74207699 | Msa1123320:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 74207545 | 74209018 | 74207545 | ID=Msa1123320;Name=Msa1123320 |
| chr7_3 | mRNA | 74207545 | 74209018 | 74207545 | ID=Msa1123320-mRNA-1;Parent=Msa1123320;Name=Msa1123320-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|1|1|1|2|0|130 |
| chr7_3 | exon | 74207545 | 74207760 | 74207545 | ID=Msa1123320-mRNA-1:exon:19736;Parent=Msa1123320-mRNA-1 |
| chr7_3 | exon | 74208842 | 74209018 | 74208842 | ID=Msa1123320-mRNA-1:exon:19737;Parent=Msa1123320-mRNA-1 |
| chr7_3 | CDS | 74207545 | 74207760 | 74207545 | ID=Msa1123320-mRNA-1:cds;Parent=Msa1123320-mRNA-1 |
| chr7_3 | CDS | 74208842 | 74209018 | 74208842 | ID=Msa1123320-mRNA-1:cds;Parent=Msa1123320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
