Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123330 | XP_003625472.1 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.30e-89 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123330 | sp|F4JZT3|ARR24_ARATH | 63.025 | 119 | 44 | 0 | 9 | 127 | 16 | 134 | 1.28e-47 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123330 | G7KZK5 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.10e-89 | 265 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1123330 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123330 | MtrunA17_Chr8g0364781 | 67.442 | 129 | 39 | 2 | 1 | 126 | 1 | 129 | 9.38e-55 | 168 |
| Msa1123330 | MtrunA17_Chr7g0262671 | 94.805 | 77 | 4 | 0 | 1 | 77 | 1 | 77 | 1.93e-49 | 153 |
| Msa1123330 | MtrunA17_Chr7g0262351 | 59.200 | 125 | 50 | 1 | 5 | 129 | 16 | 139 | 7.51e-46 | 145 |
| Msa1123330 | MtrunA17_Chr7g0262681 | 93.548 | 62 | 4 | 0 | 69 | 130 | 5 | 66 | 7.57e-37 | 120 |
| Msa1123330 | MtrunA17_Chr6g0472261 | 54.054 | 74 | 34 | 0 | 4 | 77 | 3 | 76 | 1.11e-21 | 82.0 |
| Msa1123330 | MtrunA17_Chr6g0451941 | 34.211 | 114 | 75 | 0 | 11 | 124 | 33 | 146 | 2.47e-18 | 75.9 |
| Msa1123330 | MtrunA17_Chr8g0392301 | 27.820 | 133 | 79 | 1 | 14 | 129 | 864 | 996 | 1.38e-12 | 63.5 |
| Msa1123330 | MtrunA17_Chr5g0447641 | 41.791 | 67 | 39 | 0 | 14 | 80 | 1077 | 1143 | 1.22e-11 | 60.8 |
| Msa1123330 | MtrunA17_Chr8g0371601 | 30.597 | 134 | 72 | 3 | 11 | 123 | 1029 | 1162 | 1.74e-11 | 60.1 |
| Msa1123330 | MtrunA17_Chr5g0405701 | 30.000 | 150 | 74 | 4 | 11 | 129 | 1050 | 1199 | 7.46e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123330 | AT5G26594.1 | 63.025 | 119 | 44 | 0 | 9 | 127 | 16 | 134 | 1.30e-48 | 152 |
| Msa1123330 | AT3G04280.1 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1123330 | AT3G04280.2 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1123330 | AT3G04280.3 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1123330 | AT2G01830.5 | 30.657 | 137 | 82 | 2 | 2 | 125 | 922 | 1058 | 4.61e-13 | 65.1 |
| Msa1123330 | AT2G01830.2 | 30.657 | 137 | 82 | 2 | 2 | 125 | 933 | 1069 | 5.04e-13 | 65.1 |
| Msa1123330 | AT2G01830.1 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1123330 | AT2G01830.4 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1123330 | AT2G01830.6 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1123330 | AT2G01830.3 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1123330 | AT5G35750.1 | 28.889 | 135 | 74 | 2 | 14 | 126 | 1038 | 1172 | 1.63e-12 | 63.5 |
Find 31 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGATGTTGAATAAATT+TGG | 0.144966 | 7_3:+74216992 | Msa1123330:CDS |
| GCAATACTTAGTTCCATTCT+TGG | 0.228362 | 7_3:+74218341 | Msa1123330:CDS |
| TATCCATGTCCATGAGAATT+AGG | 0.311699 | 7_3:-74217084 | None:intergenic |
| TGGATTGATCTTGCCAAGAA+TGG | 0.418939 | 7_3:-74218354 | None:intergenic |
| CACAACCAGTGCTGTTAGCT+TGG | 0.421611 | 7_3:-74216939 | None:intergenic |
| AAAATTCATGGAAGCTGGAT+TGG | 0.421768 | 7_3:+74218289 | Msa1123330:CDS |
| TGGTGTGTCATCACGCTCTA+TGG | 0.423024 | 7_3:+74218253 | Msa1123330:CDS |
| AGATGAAATACTAAAATTCA+TGG | 0.428022 | 7_3:+74218277 | Msa1123330:CDS |
| ACTAAGTATTGCATTGTTCA+AGG | 0.440010 | 7_3:-74218330 | None:intergenic |
| AAGAAGCAGTGGACATTCAT+TGG | 0.445266 | 7_3:+74217044 | Msa1123330:CDS |
| ATACTAAAATTCATGGAAGC+TGG | 0.448559 | 7_3:+74218284 | Msa1123330:CDS |
| GGTATTTGTAGCACAATTGT+TGG | 0.475026 | 7_3:+74218233 | Msa1123330:CDS |
| AAAATTTGACCTAATTCTCA+TGG | 0.477878 | 7_3:+74217075 | Msa1123330:CDS |
| AAAAGTCAAGGTGTGGAGAA+TGG | 0.478580 | 7_3:+74217019 | Msa1123330:CDS |
| ACAAAGGAACTTCGTGCAAT+GGG | 0.482431 | 7_3:+74218212 | Msa1123330:CDS |
| CAAGCTAACAGCACTGGTTG+TGG | 0.482562 | 7_3:+74216940 | Msa1123330:CDS |
| ACCTCAATGCCATTCATGAT+AGG | 0.492567 | 7_3:-74217109 | None:intergenic |
| CCTTGCATCCATCACACAGT+TGG | 0.511788 | 7_3:-74218374 | None:intergenic |
| AACAAAGGAACTTCGTGCAA+TGG | 0.518430 | 7_3:+74218211 | Msa1123330:CDS |
| ATGGATATGCCTATCATGAA+TGG | 0.542735 | 7_3:+74217100 | Msa1123330:CDS |
| CTAAGTATTGCATTGTTCAA+GGG | 0.546876 | 7_3:-74218329 | None:intergenic |
| CAGTGGACATTCATTGGCGT+GGG | 0.559565 | 7_3:+74217050 | Msa1123330:CDS |
| GCCTATCATGAATGGCATTG+AGG | 0.559799 | 7_3:+74217108 | Msa1123330:CDS |
| TGTATCCAAGCTAACAGCAC+TGG | 0.575373 | 7_3:+74216934 | Msa1123330:CDS |
| TGTGTTTATATAGGCAACAA+AGG | 0.581181 | 7_3:+74218196 | Msa1123330:intron |
| AGATCAATCCAACTGTGTGA+TGG | 0.583988 | 7_3:+74218366 | Msa1123330:CDS |
| TGACCTAATTCTCATGGACA+TGG | 0.592027 | 7_3:+74217081 | Msa1123330:CDS |
| GCAGTGGACATTCATTGGCG+TGG | 0.597898 | 7_3:+74217049 | Msa1123330:CDS |
| AAATTTGGAGTCAAAAGTCA+AGG | 0.637368 | 7_3:+74217007 | Msa1123330:CDS |
| TGGAGTCAAAAGTCAAGGTG+TGG | 0.637883 | 7_3:+74217012 | Msa1123330:CDS |
| GGAGAATGGAAAAGAAGCAG+TGG | 0.653869 | 7_3:+74217033 | Msa1123330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAATATAAATAAAAA+AGG | - | chr7_3:74218164-74218183 | None:intergenic | 0.0% |
| !! | AATATAAATATAAATAAAAA+AGG | - | chr7_3:74218164-74218183 | None:intergenic | 0.0% |
| !! | TATAAAAATATATAAACTTG+GGG | - | chr7_3:74217354-74217373 | None:intergenic | 10.0% |
| !! | CATATAAAAATATATAAACT+TGG | - | chr7_3:74217356-74217375 | None:intergenic | 10.0% |
| !!! | AAAAAAATATTTTACTTTTG+AGG | - | chr7_3:74217720-74217739 | None:intergenic | 10.0% |
| !! | ACTAAAATTAACTATAAAAT+TGG | - | chr7_3:74217890-74217909 | None:intergenic | 10.0% |
| !!! | AATTTTATAGTTAATTTTAG+TGG | + | chr7_3:74217889-74217908 | Msa1123330:intron | 10.0% |
| !! | TATAAAAATATATAAACTTG+GGG | - | chr7_3:74217354-74217373 | None:intergenic | 10.0% |
| !! | CATATAAAAATATATAAACT+TGG | - | chr7_3:74217356-74217375 | None:intergenic | 10.0% |
| !!! | AAAAAAATATTTTACTTTTG+AGG | - | chr7_3:74217720-74217739 | None:intergenic | 10.0% |
| !! | ACTAAAATTAACTATAAAAT+TGG | - | chr7_3:74217890-74217909 | None:intergenic | 10.0% |
| !!! | AATTTTATAGTTAATTTTAG+TGG | + | chr7_3:74217889-74217908 | Msa1123330:intron | 10.0% |
| !!! | ATATTTATATAGTTTGTTAG+AGG | + | chr7_3:74217571-74217590 | Msa1123330:intron | 15.0% |
| !! | AAATTAACTATAAAATTGGA+GGG | - | chr7_3:74217886-74217905 | None:intergenic | 15.0% |
| !! | AAAATTAACTATAAAATTGG+AGG | - | chr7_3:74217887-74217906 | None:intergenic | 15.0% |
| !!! | ATATTTATATAGTTTGTTAG+AGG | + | chr7_3:74217571-74217590 | Msa1123330:intron | 15.0% |
| !! | AAATTAACTATAAAATTGGA+GGG | - | chr7_3:74217886-74217905 | None:intergenic | 15.0% |
| !! | AAAATTAACTATAAAATTGG+AGG | - | chr7_3:74217887-74217906 | None:intergenic | 15.0% |
| !! | CAAAAGATGTTGAATAAATT+TGG | + | chr7_3:74216992-74217011 | Msa1123330:CDS | 20.0% |
| !! | CTCTATAATTAATTAAGTAC+AGG | - | chr7_3:74217138-74217157 | None:intergenic | 20.0% |
| !! | TGATTATGGTCTATATAATT+TGG | + | chr7_3:74217374-74217393 | Msa1123330:intron | 20.0% |
| !! | GAAGAAAATGAAAATACTTA+TGG | + | chr7_3:74217449-74217468 | Msa1123330:intron | 20.0% |
| !! | AGATGAAATACTAAAATTCA+TGG | + | chr7_3:74218277-74218296 | Msa1123330:CDS | 20.0% |
| !! | CAAAAGATGTTGAATAAATT+TGG | + | chr7_3:74216992-74217011 | Msa1123330:CDS | 20.0% |
| !! | CTCTATAATTAATTAAGTAC+AGG | - | chr7_3:74217138-74217157 | None:intergenic | 20.0% |
| !! | TGATTATGGTCTATATAATT+TGG | + | chr7_3:74217374-74217393 | Msa1123330:intron | 20.0% |
| !! | GAAGAAAATGAAAATACTTA+TGG | + | chr7_3:74217449-74217468 | Msa1123330:intron | 20.0% |
| !! | AGATGAAATACTAAAATTCA+TGG | + | chr7_3:74218277-74218296 | Msa1123330:CDS | 20.0% |
| !! | ACATCTTTTGATGAATCTTT+CGG | - | chr7_3:74216982-74217001 | None:intergenic | 25.0% |
| ! | AAAATTTGACCTAATTCTCA+TGG | + | chr7_3:74217075-74217094 | Msa1123330:CDS | 25.0% |
| ! | TGATATATGTACAACCATTT+GGG | + | chr7_3:74217161-74217180 | Msa1123330:intron | 25.0% |
| !! | TTCATTTTCTCTCTTTTCAT+TGG | + | chr7_3:74217201-74217220 | Msa1123330:intron | 25.0% |
| ! | GTCAAAAAGTTGTAATAAAG+TGG | + | chr7_3:74217294-74217313 | Msa1123330:intron | 25.0% |
| ! | TAGTGTACTATTATTGTTCA+TGG | + | chr7_3:74217427-74217446 | Msa1123330:intron | 25.0% |
| !!! | TTATATAGTTTGTTAGAGGA+AGG | + | chr7_3:74217575-74217594 | Msa1123330:intron | 25.0% |
| ! | ACTAAAGGAATTTAAGAATG+AGG | - | chr7_3:74217634-74217653 | None:intergenic | 25.0% |
| ! | TTAAATTCCTTTAGTGTTCA+GGG | + | chr7_3:74217639-74217658 | Msa1123330:intron | 25.0% |
| !!! | CTCATTTGATTTTGTTACTA+TGG | + | chr7_3:74217778-74217797 | Msa1123330:intron | 25.0% |
| !!! | GATAGTTTTATTGAGAAAGA+AGG | - | chr7_3:74218055-74218074 | None:intergenic | 25.0% |
| ! | TGTGTGTTATGTGTTTATAT+AGG | + | chr7_3:74218187-74218206 | Msa1123330:intron | 25.0% |
| !! | ACATCTTTTGATGAATCTTT+CGG | - | chr7_3:74216982-74217001 | None:intergenic | 25.0% |
| ! | AAAATTTGACCTAATTCTCA+TGG | + | chr7_3:74217075-74217094 | Msa1123330:CDS | 25.0% |
| ! | TGATATATGTACAACCATTT+GGG | + | chr7_3:74217161-74217180 | Msa1123330:intron | 25.0% |
| !! | TTCATTTTCTCTCTTTTCAT+TGG | + | chr7_3:74217201-74217220 | Msa1123330:intron | 25.0% |
| ! | GTCAAAAAGTTGTAATAAAG+TGG | + | chr7_3:74217294-74217313 | Msa1123330:intron | 25.0% |
| ! | TAGTGTACTATTATTGTTCA+TGG | + | chr7_3:74217427-74217446 | Msa1123330:intron | 25.0% |
| !!! | TTATATAGTTTGTTAGAGGA+AGG | + | chr7_3:74217575-74217594 | Msa1123330:intron | 25.0% |
| ! | ACTAAAGGAATTTAAGAATG+AGG | - | chr7_3:74217634-74217653 | None:intergenic | 25.0% |
| ! | TTAAATTCCTTTAGTGTTCA+GGG | + | chr7_3:74217639-74217658 | Msa1123330:intron | 25.0% |
| !!! | CTCATTTGATTTTGTTACTA+TGG | + | chr7_3:74217778-74217797 | Msa1123330:intron | 25.0% |
| !!! | GATAGTTTTATTGAGAAAGA+AGG | - | chr7_3:74218055-74218074 | None:intergenic | 25.0% |
| ! | TGTGTGTTATGTGTTTATAT+AGG | + | chr7_3:74218187-74218206 | Msa1123330:intron | 25.0% |
| ! | AAATTTGGAGTCAAAAGTCA+AGG | + | chr7_3:74217007-74217026 | Msa1123330:CDS | 30.0% |
| GTGATATATGTACAACCATT+TGG | + | chr7_3:74217160-74217179 | Msa1123330:intron | 30.0% | |
| TTAGAGGAAGGAGAAATTAT+TGG | + | chr7_3:74217587-74217606 | Msa1123330:intron | 30.0% | |
| TGGTAACAAATATCGAATGT+TGG | + | chr7_3:74217607-74217626 | Msa1123330:intron | 30.0% | |
| CTTAAATTCCTTTAGTGTTC+AGG | + | chr7_3:74217638-74217657 | Msa1123330:intron | 30.0% | |
| TGAGTGAACTTTATAATACG+AGG | - | chr7_3:74217762-74217781 | None:intergenic | 30.0% | |
| TTAAGTCTCTCTAGATGTTT+AGG | + | chr7_3:74217932-74217951 | Msa1123330:intron | 30.0% | |
| AGGAAAATATGTTCACTCAT+TGG | + | chr7_3:74218000-74218019 | Msa1123330:intron | 30.0% | |
| AAAGAAGGAATTAGTACAAG+TGG | - | chr7_3:74218040-74218059 | None:intergenic | 30.0% | |
| TGTGTTTATATAGGCAACAA+AGG | + | chr7_3:74218196-74218215 | Msa1123330:intron | 30.0% | |
| ATACTAAAATTCATGGAAGC+TGG | + | chr7_3:74218284-74218303 | Msa1123330:CDS | 30.0% | |
| ! | CTAAGTATTGCATTGTTCAA+GGG | - | chr7_3:74218332-74218351 | None:intergenic | 30.0% |
| ! | ACTAAGTATTGCATTGTTCA+AGG | - | chr7_3:74218333-74218352 | None:intergenic | 30.0% |
| ! | AAATTTGGAGTCAAAAGTCA+AGG | + | chr7_3:74217007-74217026 | Msa1123330:CDS | 30.0% |
| GTGATATATGTACAACCATT+TGG | + | chr7_3:74217160-74217179 | Msa1123330:intron | 30.0% | |
| TTAGAGGAAGGAGAAATTAT+TGG | + | chr7_3:74217587-74217606 | Msa1123330:intron | 30.0% | |
| TGGTAACAAATATCGAATGT+TGG | + | chr7_3:74217607-74217626 | Msa1123330:intron | 30.0% | |
| CTTAAATTCCTTTAGTGTTC+AGG | + | chr7_3:74217638-74217657 | Msa1123330:intron | 30.0% | |
| TGAGTGAACTTTATAATACG+AGG | - | chr7_3:74217762-74217781 | None:intergenic | 30.0% | |
| TTAAGTCTCTCTAGATGTTT+AGG | + | chr7_3:74217932-74217951 | Msa1123330:intron | 30.0% | |
| AGGAAAATATGTTCACTCAT+TGG | + | chr7_3:74218000-74218019 | Msa1123330:intron | 30.0% | |
| AAAGAAGGAATTAGTACAAG+TGG | - | chr7_3:74218040-74218059 | None:intergenic | 30.0% | |
| TGTGTTTATATAGGCAACAA+AGG | + | chr7_3:74218196-74218215 | Msa1123330:intron | 30.0% | |
| ATACTAAAATTCATGGAAGC+TGG | + | chr7_3:74218284-74218303 | Msa1123330:CDS | 30.0% | |
| ! | CTAAGTATTGCATTGTTCAA+GGG | - | chr7_3:74218332-74218351 | None:intergenic | 30.0% |
| ! | ACTAAGTATTGCATTGTTCA+AGG | - | chr7_3:74218333-74218352 | None:intergenic | 30.0% |
| ! | AGCTTGGATACAAAGTTTTG+AGG | - | chr7_3:74216926-74216945 | None:intergenic | 35.0% |
| TATCCATGTCCATGAGAATT+AGG | - | chr7_3:74217087-74217106 | None:intergenic | 35.0% | |
| ATGGATATGCCTATCATGAA+TGG | + | chr7_3:74217100-74217119 | Msa1123330:CDS | 35.0% | |
| TGTCATCAAATTGTCCCAAA+TGG | - | chr7_3:74217178-74217197 | None:intergenic | 35.0% | |
| AAATACTTATGGCCCAACAT+TGG | + | chr7_3:74217460-74217479 | Msa1123330:intron | 35.0% | |
| ! | AAAGTACCTTCACCAATGTT+GGG | - | chr7_3:74217475-74217494 | None:intergenic | 35.0% |
| !! | AAAAGTACCTTCACCAATGT+TGG | - | chr7_3:74217476-74217495 | None:intergenic | 35.0% |
| AAGTTGTGTCTTTACTTGCA+GGG | - | chr7_3:74217677-74217696 | None:intergenic | 35.0% | |
| AAAGTTGTGTCTTTACTTGC+AGG | - | chr7_3:74217678-74217697 | None:intergenic | 35.0% | |
| TGCAAGTAAAGACACAACTT+TGG | + | chr7_3:74217677-74217696 | Msa1123330:intron | 35.0% | |
| GAAGATGTAGCTTAGTTGTA+TGG | - | chr7_3:74217972-74217991 | None:intergenic | 35.0% | |
| ACAACTAAGCTACATCTTCA+AGG | + | chr7_3:74217973-74217992 | Msa1123330:intron | 35.0% | |
| CAACTAAGCTACATCTTCAA+GGG | + | chr7_3:74217974-74217993 | Msa1123330:intron | 35.0% | |
| GGTATTTGTAGCACAATTGT+TGG | + | chr7_3:74218233-74218252 | Msa1123330:CDS | 35.0% | |
| AAAATTCATGGAAGCTGGAT+TGG | + | chr7_3:74218289-74218308 | Msa1123330:CDS | 35.0% | |
| GCAATACTTAGTTCCATTCT+TGG | + | chr7_3:74218341-74218360 | Msa1123330:CDS | 35.0% | |
| ! | AGCTTGGATACAAAGTTTTG+AGG | - | chr7_3:74216926-74216945 | None:intergenic | 35.0% |
| TATCCATGTCCATGAGAATT+AGG | - | chr7_3:74217087-74217106 | None:intergenic | 35.0% | |
| ATGGATATGCCTATCATGAA+TGG | + | chr7_3:74217100-74217119 | Msa1123330:CDS | 35.0% | |
| TGTCATCAAATTGTCCCAAA+TGG | - | chr7_3:74217178-74217197 | None:intergenic | 35.0% | |
| AAATACTTATGGCCCAACAT+TGG | + | chr7_3:74217460-74217479 | Msa1123330:intron | 35.0% | |
| ! | AAAGTACCTTCACCAATGTT+GGG | - | chr7_3:74217475-74217494 | None:intergenic | 35.0% |
| !! | AAAAGTACCTTCACCAATGT+TGG | - | chr7_3:74217476-74217495 | None:intergenic | 35.0% |
| AAGTTGTGTCTTTACTTGCA+GGG | - | chr7_3:74217677-74217696 | None:intergenic | 35.0% | |
| AAAGTTGTGTCTTTACTTGC+AGG | - | chr7_3:74217678-74217697 | None:intergenic | 35.0% | |
| TGCAAGTAAAGACACAACTT+TGG | + | chr7_3:74217677-74217696 | Msa1123330:intron | 35.0% | |
| GAAGATGTAGCTTAGTTGTA+TGG | - | chr7_3:74217972-74217991 | None:intergenic | 35.0% | |
| ACAACTAAGCTACATCTTCA+AGG | + | chr7_3:74217973-74217992 | Msa1123330:intron | 35.0% | |
| CAACTAAGCTACATCTTCAA+GGG | + | chr7_3:74217974-74217993 | Msa1123330:intron | 35.0% | |
| GGTATTTGTAGCACAATTGT+TGG | + | chr7_3:74218233-74218252 | Msa1123330:CDS | 35.0% | |
| AAAATTCATGGAAGCTGGAT+TGG | + | chr7_3:74218289-74218308 | Msa1123330:CDS | 35.0% | |
| GCAATACTTAGTTCCATTCT+TGG | + | chr7_3:74218341-74218360 | Msa1123330:CDS | 35.0% | |
| AAAAGTCAAGGTGTGGAGAA+TGG | + | chr7_3:74217019-74217038 | Msa1123330:CDS | 40.0% | |
| AAGAAGCAGTGGACATTCAT+TGG | + | chr7_3:74217044-74217063 | Msa1123330:CDS | 40.0% | |
| TGACCTAATTCTCATGGACA+TGG | + | chr7_3:74217081-74217100 | Msa1123330:CDS | 40.0% | |
| ACCTCAATGCCATTCATGAT+AGG | - | chr7_3:74217112-74217131 | None:intergenic | 40.0% | |
| AACAAAGGAACTTCGTGCAA+TGG | + | chr7_3:74218211-74218230 | Msa1123330:CDS | 40.0% | |
| ACAAAGGAACTTCGTGCAAT+GGG | + | chr7_3:74218212-74218231 | Msa1123330:CDS | 40.0% | |
| TGGATTGATCTTGCCAAGAA+TGG | - | chr7_3:74218357-74218376 | None:intergenic | 40.0% | |
| AAAAGTCAAGGTGTGGAGAA+TGG | + | chr7_3:74217019-74217038 | Msa1123330:CDS | 40.0% | |
| AAGAAGCAGTGGACATTCAT+TGG | + | chr7_3:74217044-74217063 | Msa1123330:CDS | 40.0% | |
| TGACCTAATTCTCATGGACA+TGG | + | chr7_3:74217081-74217100 | Msa1123330:CDS | 40.0% | |
| ACCTCAATGCCATTCATGAT+AGG | - | chr7_3:74217112-74217131 | None:intergenic | 40.0% | |
| AACAAAGGAACTTCGTGCAA+TGG | + | chr7_3:74218211-74218230 | Msa1123330:CDS | 40.0% | |
| ACAAAGGAACTTCGTGCAAT+GGG | + | chr7_3:74218212-74218231 | Msa1123330:CDS | 40.0% | |
| TGGATTGATCTTGCCAAGAA+TGG | - | chr7_3:74218357-74218376 | None:intergenic | 40.0% | |
| TGTATCCAAGCTAACAGCAC+TGG | + | chr7_3:74216934-74216953 | Msa1123330:CDS | 45.0% | |
| TGGAGTCAAAAGTCAAGGTG+TGG | + | chr7_3:74217012-74217031 | Msa1123330:CDS | 45.0% | |
| GGAGAATGGAAAAGAAGCAG+TGG | + | chr7_3:74217033-74217052 | Msa1123330:CDS | 45.0% | |
| GCCTATCATGAATGGCATTG+AGG | + | chr7_3:74217108-74217127 | Msa1123330:CDS | 45.0% | |
| TTATGGCCCAACATTGGTGA+AGG | + | chr7_3:74217466-74217485 | Msa1123330:intron | 45.0% | |
| GGATCAACCCTGAACACTAA+AGG | - | chr7_3:74217649-74217668 | None:intergenic | 45.0% | |
| CTAAGCTACATCTTCAAGGG+AGG | + | chr7_3:74217977-74217996 | Msa1123330:intron | 45.0% | |
| TGTATCCAAGCTAACAGCAC+TGG | + | chr7_3:74216934-74216953 | Msa1123330:CDS | 45.0% | |
| TGGAGTCAAAAGTCAAGGTG+TGG | + | chr7_3:74217012-74217031 | Msa1123330:CDS | 45.0% | |
| GGAGAATGGAAAAGAAGCAG+TGG | + | chr7_3:74217033-74217052 | Msa1123330:CDS | 45.0% | |
| GCCTATCATGAATGGCATTG+AGG | + | chr7_3:74217108-74217127 | Msa1123330:CDS | 45.0% | |
| TTATGGCCCAACATTGGTGA+AGG | + | chr7_3:74217466-74217485 | Msa1123330:intron | 45.0% | |
| GGATCAACCCTGAACACTAA+AGG | - | chr7_3:74217649-74217668 | None:intergenic | 45.0% | |
| CTAAGCTACATCTTCAAGGG+AGG | + | chr7_3:74217977-74217996 | Msa1123330:intron | 45.0% | |
| !! | ATATAAAAATATATAAACTT+GGG | - | chr7_3:74217355-74217374 | None:intergenic | 5.0% |
| !!! | TATATATTTTTATATGATTA+TGG | + | chr7_3:74217360-74217379 | Msa1123330:intron | 5.0% |
| !!! | AATAAATATTTATTTTTTGA+AGG | + | chr7_3:74217512-74217531 | Msa1123330:intron | 5.0% |
| !! | AGAAATAAATATTTATTTAT+AGG | + | chr7_3:74217539-74217558 | Msa1123330:intron | 5.0% |
| !!! | TTTTTAATAGTATTAATTTT+AGG | + | chr7_3:74217736-74217755 | Msa1123330:intron | 5.0% |
| !! | ATATAAAAATATATAAACTT+GGG | - | chr7_3:74217355-74217374 | None:intergenic | 5.0% |
| !!! | TATATATTTTTATATGATTA+TGG | + | chr7_3:74217360-74217379 | Msa1123330:intron | 5.0% |
| !!! | AATAAATATTTATTTTTTGA+AGG | + | chr7_3:74217512-74217531 | Msa1123330:intron | 5.0% |
| !! | AGAAATAAATATTTATTTAT+AGG | + | chr7_3:74217539-74217558 | Msa1123330:intron | 5.0% |
| !!! | TTTTTAATAGTATTAATTTT+AGG | + | chr7_3:74217736-74217755 | Msa1123330:intron | 5.0% |
| ! | CACAACCAGTGCTGTTAGCT+TGG | - | chr7_3:74216942-74216961 | None:intergenic | 50.0% |
| !! | CAAGCTAACAGCACTGGTTG+TGG | + | chr7_3:74216940-74216959 | Msa1123330:CDS | 50.0% |
| CAGTGGACATTCATTGGCGT+GGG | + | chr7_3:74217050-74217069 | Msa1123330:CDS | 50.0% | |
| GTCTTTACTTGCAGGGTCGT+TGG | - | chr7_3:74217670-74217689 | None:intergenic | 50.0% | |
| AGCTACATCTTCAAGGGAGG+AGG | + | chr7_3:74217980-74217999 | Msa1123330:intron | 50.0% | |
| TGGTGTGTCATCACGCTCTA+TGG | + | chr7_3:74218253-74218272 | Msa1123330:CDS | 50.0% | |
| ! | CACAACCAGTGCTGTTAGCT+TGG | - | chr7_3:74216942-74216961 | None:intergenic | 50.0% |
| !! | CAAGCTAACAGCACTGGTTG+TGG | + | chr7_3:74216940-74216959 | Msa1123330:CDS | 50.0% |
| CAGTGGACATTCATTGGCGT+GGG | + | chr7_3:74217050-74217069 | Msa1123330:CDS | 50.0% | |
| GTCTTTACTTGCAGGGTCGT+TGG | - | chr7_3:74217670-74217689 | None:intergenic | 50.0% | |
| AGCTACATCTTCAAGGGAGG+AGG | + | chr7_3:74217980-74217999 | Msa1123330:intron | 50.0% | |
| TGGTGTGTCATCACGCTCTA+TGG | + | chr7_3:74218253-74218272 | Msa1123330:CDS | 50.0% | |
| GCAGTGGACATTCATTGGCG+TGG | + | chr7_3:74217049-74217068 | Msa1123330:CDS | 55.0% | |
| GCAGTGGACATTCATTGGCG+TGG | + | chr7_3:74217049-74217068 | Msa1123330:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 74216914 | 74218385 | 74216914 | ID=Msa1123330;Name=Msa1123330 |
| chr7_3 | mRNA | 74216914 | 74218385 | 74216914 | ID=Msa1123330-mRNA-1;Parent=Msa1123330;Name=Msa1123330-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|1|1|1|2|0|130 |
| chr7_3 | exon | 74216914 | 74217129 | 74216914 | ID=Msa1123330-mRNA-1:exon:19738;Parent=Msa1123330-mRNA-1 |
| chr7_3 | exon | 74218209 | 74218385 | 74218209 | ID=Msa1123330-mRNA-1:exon:19739;Parent=Msa1123330-mRNA-1 |
| chr7_3 | CDS | 74216914 | 74217129 | 74216914 | ID=Msa1123330-mRNA-1:cds;Parent=Msa1123330-mRNA-1 |
| chr7_3 | CDS | 74218209 | 74218385 | 74218209 | ID=Msa1123330-mRNA-1:cds;Parent=Msa1123330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
