AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1124670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124670 MtrunA17_Chr7g0265291 99.515 206 1 0 1 206 1 206 1.93e-154 426
Msa1124670 MtrunA17_Chr1g0179781 78.922 204 40 2 1 203 1 202 6.36e-115 325
Msa1124670 MtrunA17_Chr5g0395181 56.098 205 81 4 2 206 16 211 1.68e-76 229
Msa1124670 MtrunA17_Chr5g0411151 57.767 206 69 5 7 203 35 231 2.36e-75 227
Msa1124670 MtrunA17_Chr4g0040071 55.392 204 75 6 7 203 15 209 7.43e-74 222
Msa1124670 MtrunA17_Chr8g0366581 58.333 204 71 5 7 203 33 229 4.81e-73 221
Msa1124670 MtrunA17_Chr2g0320521 39.834 241 96 10 1 202 1 231 1.14e-44 148
Msa1124670 MtrunA17_Chr4g0020811 51.034 145 59 6 1 136 1 142 9.26e-40 133
Msa1124670 MtrunA17_Chr2g0308401 49.296 142 61 5 4 136 1 140 7.88e-39 131
Msa1124670 MtrunA17_Chr2g0297251 35.242 227 112 5 7 203 37 258 2.18e-36 127
Msa1124670 MtrunA17_Chr2g0320561 47.651 149 67 4 4 143 1 147 4.11e-36 126
Msa1124670 MtrunA17_Chr2g0320551 47.183 142 64 4 4 136 1 140 1.65e-35 123
Msa1124670 MtrunA17_Chr7g0230511 42.754 138 74 3 5 142 7 139 8.37e-35 123
Msa1124670 MtrunA17_Chr4g0065041 42.647 136 74 1 7 142 8 139 2.95e-33 119
Msa1124670 MtrunA17_Chr8g0386511 33.333 159 93 4 48 202 4 153 4.57e-21 85.5
Msa1124670 MtrunA17_Chr8g0392151 34.615 156 76 6 9 143 15 165 3.52e-18 79.7
Msa1124670 MtrunA17_Chr4g0052451 43.902 82 40 1 61 136 10 91 7.79e-18 75.1
Msa1124670 MtrunA17_Chr5g0434331 27.363 201 110 6 4 202 40 206 8.74e-17 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124670 AT1G32700.1 55.941 202 78 5 7 203 12 207 2.39e-71 216
Msa1124670 AT4G17900.2 53.659 205 76 6 7 203 20 213 2.55e-67 206
Msa1124670 AT4G17900.1 53.659 205 76 6 7 203 34 227 3.26e-67 206
Msa1124670 AT2G27930.1 55.072 207 63 4 7 204 4 189 4.14e-67 204
Msa1124670 AT2G27930.4 55.072 207 63 4 7 204 4 189 4.14e-67 204
Msa1124670 AT1G76590.1 48.918 231 80 6 7 202 18 245 1.07e-66 205
Msa1124670 AT1G21000.2 48.954 239 71 9 7 202 13 243 3.08e-66 204
Msa1124670 AT1G21000.1 48.954 239 71 9 7 202 16 246 4.33e-66 204
Msa1124670 AT1G43000.2 47.945 219 90 8 2 202 11 223 2.90e-63 196
Msa1124670 AT1G43000.1 47.926 217 93 7 2 202 4 216 3.61e-63 195
Msa1124670 AT2G27930.3 66.187 139 36 2 7 136 4 140 2.23e-59 184
Msa1124670 AT2G27930.2 66.187 139 36 2 7 136 4 140 2.23e-59 184
Msa1124670 AT1G32700.2 56.322 174 65 5 35 203 1 168 2.58e-57 179
Msa1124670 AT5G46710.3 48.259 201 96 5 7 202 12 209 4.95e-55 174
Msa1124670 AT5G46710.1 48.259 201 96 5 7 202 28 225 9.76e-55 174
Msa1124670 AT5G46710.2 57.252 131 52 3 7 136 28 155 1.51e-46 151
Msa1124670 AT2G27930.5 52.318 151 44 3 63 204 61 192 7.05e-40 135
Msa1124670 AT2G27930.6 52.318 151 44 3 63 204 61 192 7.05e-40 135
Msa1124670 AT3G60670.1 43.165 139 75 2 1 139 1 135 6.26e-33 119
Msa1124670 AT2G12646.3 43.796 137 73 2 5 141 1 133 9.17e-33 119
Msa1124670 AT1G31040.1 34.498 229 112 7 7 202 19 242 9.25e-33 118
Msa1124670 AT2G12646.1 44.444 135 71 2 7 141 6 136 1.04e-32 118
Msa1124670 AT2G12646.2 44.444 135 71 2 7 141 6 136 1.04e-32 118
Msa1124670 AT2G01818.1 33.810 210 122 5 9 202 13 221 1.43e-26 102
Msa1124670 AT2G01818.2 33.333 150 83 5 69 202 9 157 1.09e-12 63.5

Find 103 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTTCGGTTCTGTTCTT+TGG 0.140972 7_3:-75837471 Msa1124670:CDS
GCTACTCCTTTCCCAGATTT+TGG 0.169958 7_3:+75837530 None:intergenic
TTTCTTCTCCTTGCATTTAA+AGG 0.172328 7_3:+75836290 None:intergenic
AAAAGAGAGTGTAGTGTAAT+AGG 0.211550 7_3:+75838390 None:intergenic
GAATACAATACAACCCTATT+TGG 0.214365 7_3:-75836165 Msa1124670:three_prime_UTR
TACTATGCATTATTGATTCT+TGG 0.219611 7_3:+75835958 None:intergenic
ATTCCTTCTAAACTCAAAAT+TGG 0.257186 7_3:-75836218 Msa1124670:three_prime_UTR
GTCCAAGGTACTTCATGATT+TGG 0.286507 7_3:-75836063 Msa1124670:three_prime_UTR
TCATTTCGGTTCTGTTCTTT+GGG 0.297486 7_3:-75837470 Msa1124670:CDS
TGGCTCAATGCGGTGGGATT+TGG 0.304487 7_3:+75838252 None:intergenic
GGATTCAATGGACGGAGATT+TGG 0.315477 7_3:+75838273 None:intergenic
TTTAATTATTATCTAATAGT+TGG 0.323891 7_3:-75835931 Msa1124670:three_prime_UTR
CACATGGGCCGTTTACATAA+AGG 0.328803 7_3:-75835820 None:intergenic
TTACTACCTGAATGACTTGA+TGG 0.329584 7_3:+75837934 None:intergenic
TAGTGTAATAGGGACGAAAA+AGG 0.336891 7_3:+75838401 None:intergenic
GTTAGGCCTCAACCAAAATC+TGG 0.351742 7_3:-75837542 Msa1124670:CDS
CAAAGACCATCAAGTCATTC+AGG 0.358735 7_3:-75837940 Msa1124670:intron
GTCGTTGAATTCTAAGTTGA+AGG 0.367643 7_3:-75838357 Msa1124670:five_prime_UTR
GAAGAAAAGGTATACCTCAT+AGG 0.379000 7_3:-75836274 Msa1124670:CDS
ATACCTCATAGGGCACCTTT+TGG 0.387290 7_3:-75836263 Msa1124670:CDS
TGGAGATGCAAGCTTTGCTT+TGG 0.396373 7_3:-75836423 Msa1124670:CDS
GGAGCTTGTTGGATTCATTT+CGG 0.401131 7_3:-75837484 Msa1124670:CDS
GTTCTGTTCTTTGGGATGTA+AGG 0.410147 7_3:-75837462 Msa1124670:intron
CTCCTTGCATTTAAAGGAGG+TGG 0.416107 7_3:+75836296 None:intergenic
CAGAAAGTGTTGGACATTAG+TGG 0.416506 7_3:-75837611 Msa1124670:CDS
AATTAAAGAAGTAAAGGAAA+TGG 0.421496 7_3:+75838431 None:intergenic
AAGTAAAGGAAAGGGTATAT+AGG 0.426584 7_3:-75836038 Msa1124670:three_prime_UTR
GGTTCCTCATTCTAATGGGA+TGG 0.428560 7_3:-75836242 Msa1124670:exon
GAGATTGAAAGTGGTGGCTG+AGG 0.430293 7_3:+75838460 None:intergenic
AAAGAGAGTGTAGTGTAATA+GGG 0.435032 7_3:+75838391 None:intergenic
GCGGTGGGATTTGGATTCAA+TGG 0.442150 7_3:+75838261 None:intergenic
TGTGGTTACCTTTATGTAAA+CGG 0.445061 7_3:+75835812 None:intergenic
GGAGGTGGAGGAGGCGTGAG+AGG 0.445087 7_3:+75836311 None:intergenic
GTTCCTCATTCTAATGGGAT+GGG 0.451443 7_3:-75836241 Msa1124670:exon
GGATTGTGGACGTTGGATGA+TGG 0.454250 7_3:+75838485 None:intergenic
GCTCACATTTGTGAGATTTG+TGG 0.456800 7_3:-75837509 Msa1124670:CDS
AGATGCAAGCTTTGCTTTGG+AGG 0.464996 7_3:-75836420 Msa1124670:CDS
GCTTTGGAGGGTAAGAATGA+AGG 0.469335 7_3:-75836407 Msa1124670:CDS
ATTGAAAGTGGTGGCTGAGG+GGG 0.473002 7_3:+75838463 None:intergenic
TCATTGTCCCACCATTCACA+TGG 0.478125 7_3:-75835836 Msa1124670:three_prime_UTR
TTCATGATTTGGAAAAGTAA+AGG 0.486797 7_3:-75836052 Msa1124670:three_prime_UTR
TTAAATGCAAGGAGAAGAAA+AGG 0.487088 7_3:-75836287 Msa1124670:CDS
GGACAATGAAAACTATAAAA+CGG 0.488038 7_3:+75835850 None:intergenic
TTCAACAATGGTTCAAGCCA+AGG 0.490118 7_3:+75838086 None:intergenic
CATTATTGATTCTTGGACAA+GGG 0.492311 7_3:+75835965 None:intergenic
GCATTTAAAGGAGGTGGAGG+AGG 0.494494 7_3:+75836302 None:intergenic
AGATTGAAAGTGGTGGCTGA+GGG 0.498629 7_3:+75838461 None:intergenic
ACACAGTGTTGGTACCTCCT+TGG 0.500488 7_3:-75838103 Msa1124670:CDS
TTGAAAGTGGTGGCTGAGGG+GGG 0.500685 7_3:+75838464 None:intergenic
CTTCTCCTTGCATTTAAAGG+AGG 0.503493 7_3:+75836293 None:intergenic
TACAATACAACCCTATTTGG+TGG 0.509396 7_3:-75836162 Msa1124670:three_prime_UTR
TTATTAAATTAAAGAAGTAA+AGG 0.511302 7_3:+75838425 None:intergenic
TTCCAAATCATGAAGTACCT+TGG 0.515905 7_3:+75836061 None:intergenic
AATGAAGGATTGACAATGGA+AGG 0.518953 7_3:-75836392 Msa1124670:CDS
AAGAAAAGGTATACCTCATA+GGG 0.519252 7_3:-75836273 Msa1124670:CDS
ACAATACAACCCTATTTGGT+GGG 0.523862 7_3:-75836161 Msa1124670:three_prime_UTR
GATGCAAGCTTTGCTTTGGA+GGG 0.525049 7_3:-75836419 Msa1124670:CDS
TAGGGTTGTATTGTATTCCA+AGG 0.525651 7_3:+75836170 None:intergenic
GATTTGTGGAAGGAGCTTGT+TGG 0.527361 7_3:-75837495 Msa1124670:CDS
AATTATTATCTAATAGTTGG+AGG 0.534181 7_3:-75835928 Msa1124670:three_prime_UTR
ATTTGGAAAAGTAAAGGAAA+GGG 0.542085 7_3:-75836046 Msa1124670:three_prime_UTR
AGATTAGGAGCCTTTGGAGG+GGG 0.542302 7_3:-75836090 Msa1124670:three_prime_UTR
CTCCACCTCCTTTAAATGCA+AGG 0.542768 7_3:-75836298 Msa1124670:CDS
AAAAGATTAGGAGCCTTTGG+AGG 0.548418 7_3:-75836093 Msa1124670:three_prime_UTR
CTTGCATTTAAAGGAGGTGG+AGG 0.548902 7_3:+75836299 None:intergenic
ATTATTATCTAATAGTTGGA+GGG 0.552005 7_3:-75835927 Msa1124670:three_prime_UTR
TTAGGCCTCAACCAAAATCT+GGG 0.556600 7_3:-75837541 Msa1124670:CDS
ATGTAAACGGCCCATGTGAA+TGG 0.558549 7_3:+75835825 None:intergenic
TATTGTTTAGATTGCAACAA+TGG 0.560088 7_3:-75838002 Msa1124670:CDS
CATTAGAATGAGGAACCAAA+AGG 0.564563 7_3:+75836248 None:intergenic
AAAGATTAGGAGCCTTTGGA+GGG 0.565639 7_3:-75836092 Msa1124670:three_prime_UTR
TGGGATTTGGATTCAATGGA+CGG 0.571190 7_3:+75838265 None:intergenic
GAACCAAAAGGTGCCCTATG+AGG 0.572485 7_3:+75836260 None:intergenic
TAAGAATGAAGGATTGACAA+TGG 0.573703 7_3:-75836396 Msa1124670:CDS
TGGACGGATGAGATTGAAAG+TGG 0.574045 7_3:+75838451 None:intergenic
CATTGTCCCACCATTCACAT+GGG 0.581558 7_3:-75835835 Msa1124670:three_prime_UTR
GATTTGGAAAAGTAAAGGAA+AGG 0.586158 7_3:-75836047 Msa1124670:three_prime_UTR
AAAAGAATTATATAATGACT+AGG 0.588212 7_3:+75836133 None:intergenic
GTCAGAGATTCAGAAAGTGT+TGG 0.588527 7_3:-75837621 Msa1124670:CDS
AATCCCATCCCATTAGAATG+AGG 0.588730 7_3:+75836238 None:intergenic
GATAATGTGGCTCAATGCGG+TGG 0.592110 7_3:+75838245 None:intergenic
AGGGTTGTATTGTATTCCAA+GGG 0.597466 7_3:+75836171 None:intergenic
TGGATGATGGAAGATGAGAT+TGG 0.600884 7_3:+75838498 None:intergenic
CCTCAACCAAAATCTGGGAA+AGG 0.603599 7_3:-75837536 Msa1124670:CDS
TACCATTGTGGTTGATAATG+TGG 0.604405 7_3:+75838232 None:intergenic
TAAATACTTAAATACCATTG+TGG 0.605312 7_3:+75838220 None:intergenic
GCATTATTGATTCTTGGACA+AGG 0.606448 7_3:+75835964 None:intergenic
TATTGATTCTTGGACAAGGG+AGG 0.608470 7_3:+75835968 None:intergenic
TTTGAAACAGGACACAGTGT+TGG 0.614526 7_3:-75838114 Msa1124670:intron
TTAGATTGCAACAATGGTGA+TGG 0.620304 7_3:-75837996 Msa1124670:CDS
ACATTTGTGAGATTTGTGGA+AGG 0.623549 7_3:-75837505 Msa1124670:CDS
CAATGGACGGAGATTTGGAG+AGG 0.625790 7_3:+75838278 None:intergenic
AAAGAAGTAAAGGAAATGGA+CGG 0.635256 7_3:+75838435 None:intergenic
TAAACGGCCCATGTGAATGG+TGG 0.649746 7_3:+75835828 None:intergenic
GATTGAAAGTGGTGGCTGAG+GGG 0.651235 7_3:+75838462 None:intergenic
AACAATGGTTCAAGCCAAGG+AGG 0.659253 7_3:+75838089 None:intergenic
AAACGGCCCATGTGAATGGT+GGG 0.679191 7_3:+75835829 None:intergenic
TCAGAAGAAGAATTGCGTGA+AGG 0.679765 7_3:-75836353 Msa1124670:CDS
ATAATGTGGCTCAATGCGGT+GGG 0.680644 7_3:+75838246 None:intergenic
AAGATTAGGAGCCTTTGGAG+GGG 0.685066 7_3:-75836091 Msa1124670:three_prime_UTR
AGCCACATTATCAACCACAA+TGG 0.705584 7_3:-75838234 Msa1124670:intron
ACGGATGAGATTGAAAGTGG+TGG 0.723086 7_3:+75838454 None:intergenic
GTTGATAATGTGGCTCAATG+CGG 0.757064 7_3:+75838242 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAAATTAAAGAAGTAA+AGG + chr7_3:75835901-75835920 None:intergenic 10.0%
!! TAAATATTCATATATGAAAT+GGG + chr7_3:75836479-75836498 None:intergenic 10.0%
!! TTAAATATTCATATATGAAA+TGG + chr7_3:75836480-75836499 None:intergenic 10.0%
!!! TATATGAATATTTAATTTTC+TGG - chr7_3:75836485-75836504 Msa1124670:intron 10.0%
!!! ATATGAATATTTAATTTTCT+GGG - chr7_3:75836486-75836505 Msa1124670:intron 10.0%
!!! TAATAATATTCTCTTTTTTA+CGG - chr7_3:75837194-75837213 Msa1124670:intron 10.0%
!! TTAAACTATATTTAGATAAA+GGG + chr7_3:75837541-75837560 None:intergenic 10.0%
!! ATTAAACTATATTTAGATAA+AGG + chr7_3:75837542-75837561 None:intergenic 10.0%
!!! AATTCTTTTTACAATAATAA+AGG - chr7_3:75838204-75838223 Msa1124670:intron 10.0%
!! TTTAATTATTATCTAATAGT+TGG - chr7_3:75838392-75838411 Msa1124670:five_prime_UTR 10.0%
!!! TTTTTTTCTTCATTTTTTTG+TGG - chr7_3:75836134-75836153 Msa1124670:three_prime_UTR 15.0%
!!! TTTGATGTTTTTAAGAATAA+TGG - chr7_3:75836178-75836197 Msa1124670:three_prime_UTR 15.0%
!!! TTGATGTTTTTAAGAATAAT+GGG - chr7_3:75836179-75836198 Msa1124670:three_prime_UTR 15.0%
!!! TTTTTTATTAATGTATTTGG+TGG - chr7_3:75836512-75836531 Msa1124670:intron 15.0%
!!! ATTATGAGTTTTTATAAACA+TGG - chr7_3:75837228-75837247 Msa1124670:intron 15.0%
!!! TTATGAGTTTTTATAAACAT+GGG - chr7_3:75837229-75837248 Msa1124670:intron 15.0%
!! TTTGTTTATCTATCATAATT+AGG - chr7_3:75837295-75837314 Msa1124670:intron 15.0%
!!! TGATAATGTACAAAATTTAT+TGG + chr7_3:75837385-75837404 None:intergenic 15.0%
!! GATAATATGTAATATTTGAT+TGG - chr7_3:75837475-75837494 Msa1124670:CDS 15.0%
!! AAAAGAATTATATAATGACT+AGG + chr7_3:75838193-75838212 None:intergenic 15.0%
!! AATTAAAGAAGTAAAGGAAA+TGG + chr7_3:75835895-75835914 None:intergenic 20.0%
!! TAAATACTTAAATACCATTG+TGG + chr7_3:75836106-75836125 None:intergenic 20.0%
!!! CATTTTTTTGTGGTATAATA+TGG - chr7_3:75836144-75836163 Msa1124670:three_prime_UTR 20.0%
!! TTTCTTTATTGAAAACCTAA+CGG - chr7_3:75836418-75836437 Msa1124670:CDS 20.0%
!! TGATGTATAATGTAATGTAA+TGG - chr7_3:75836561-75836580 Msa1124670:intron 20.0%
!! ATAATTATGATGTTGAATGA+TGG + chr7_3:75837078-75837097 None:intergenic 20.0%
!!! TATGAGTTTTTATAAACATG+GGG - chr7_3:75837230-75837249 Msa1124670:intron 20.0%
!! AAAAAGAAAACTCAAAATGT+AGG + chr7_3:75837270-75837289 None:intergenic 20.0%
!!! TGAAAAATAATATGATGATG+TGG - chr7_3:75837453-75837472 Msa1124670:intron 20.0%
!! GTAAAAATGATTTACAAAGT+CGG - chr7_3:75837506-75837525 Msa1124670:CDS 20.0%
!!! ATTTAATTTATATACCACGT+TGG + chr7_3:75837731-75837750 None:intergenic 20.0%
!! CTTGAAAGAATAAAGAAAAA+TGG - chr7_3:75837880-75837899 Msa1124670:intron 20.0%
!! TAATAAAGGTGAAAAAGATT+AGG - chr7_3:75838218-75838237 Msa1124670:intron 20.0%
!! AATTATTATCTAATAGTTGG+AGG - chr7_3:75838395-75838414 Msa1124670:five_prime_UTR 20.0%
!! ATTATTATCTAATAGTTGGA+GGG - chr7_3:75838396-75838415 Msa1124670:five_prime_UTR 20.0%
! TATTGTTTAGATTGCAACAA+TGG - chr7_3:75836321-75836340 Msa1124670:CDS 25.0%
!! TATTAATGTATTTGGTGGAA+TGG - chr7_3:75836517-75836536 Msa1124670:intron 25.0%
!! ATTAATGTATTTGGTGGAAT+GGG - chr7_3:75836518-75836537 Msa1124670:intron 25.0%
! TGTATAATGTAATGTAATGG+TGG - chr7_3:75836564-75836583 Msa1124670:intron 25.0%
!!! GATTTGTTTGTTGTTTTTGT+TGG - chr7_3:75836636-75836655 Msa1124670:intron 25.0%
! ACTCAATTATACTCATCATA+TGG - chr7_3:75837002-75837021 Msa1124670:intron 25.0%
! CTCAATTATACTCATCATAT+GGG - chr7_3:75837003-75837022 Msa1124670:intron 25.0%
! GCATGATGAATAATTAAAAG+CGG + chr7_3:75837108-75837127 None:intergenic 25.0%
! GGTAAATGTACTAATTATGA+AGG + chr7_3:75837130-75837149 None:intergenic 25.0%
! GTAATTAATCGAAATGTGAA+TGG + chr7_3:75837151-75837170 None:intergenic 25.0%
! TCTATCATAATTAGGACATT+TGG - chr7_3:75837303-75837322 Msa1124670:intron 25.0%
! AAAATCACAATGCATCAATT+AGG + chr7_3:75837332-75837351 None:intergenic 25.0%
! GCATGTCATATACAAATAAT+TGG - chr7_3:75837800-75837819 Msa1124670:intron 25.0%
! ATTCCTTCTAAACTCAAAAT+TGG - chr7_3:75838105-75838124 Msa1124670:CDS 25.0%
!!! CAATATTCAATTTTTTCCCT+TGG - chr7_3:75838136-75838155 Msa1124670:intron 25.0%
!! TTCATGATTTGGAAAAGTAA+AGG - chr7_3:75838271-75838290 Msa1124670:five_prime_UTR 25.0%
! ATTTGGAAAAGTAAAGGAAA+GGG - chr7_3:75838277-75838296 Msa1124670:five_prime_UTR 25.0%
!! AAAGAAAACTCCTTCTTTTT+CGG - chr7_3:75838308-75838327 Msa1124670:five_prime_UTR 25.0%
!!! TACTATGCATTATTGATTCT+TGG + chr7_3:75838368-75838387 None:intergenic 25.0%
! AATTAAAAAGCAAGTCTTTG+TGG - chr7_3:75838447-75838466 Msa1124670:five_prime_UTR 25.0%
! GGACAATGAAAACTATAAAA+CGG + chr7_3:75838476-75838495 None:intergenic 25.0%
AAAGAAGTAAAGGAAATGGA+CGG + chr7_3:75835891-75835910 None:intergenic 30.0%
! AAAGAGAGTGTAGTGTAATA+GGG + chr7_3:75835935-75835954 None:intergenic 30.0%
! AAAAGAGAGTGTAGTGTAAT+AGG + chr7_3:75835936-75835955 None:intergenic 30.0%
! AAAAACGGTGTTTTCAACAA+TGG + chr7_3:75836252-75836271 None:intergenic 30.0%
ATCCGACAAATGTTGAAAAA+CGG + chr7_3:75836267-75836286 None:intergenic 30.0%
AAAACCTAACGGCAAAATAT+AGG - chr7_3:75836429-75836448 Msa1124670:CDS 30.0%
GCATTGCAGATTCAAAAAAT+GGG - chr7_3:75836451-75836470 Msa1124670:intron 30.0%
!!! GAGTTTTGTTCTTGAATGTT+AGG - chr7_3:75836764-75836783 Msa1124670:intron 30.0%
!! GTTGATAATGATATGGACAT+TGG + chr7_3:75836966-75836985 None:intergenic 30.0%
!! TGTGCATGTTGATAATGATA+TGG + chr7_3:75836973-75836992 None:intergenic 30.0%
! AAATGTAGGTGATGATGTAT+GGG + chr7_3:75837043-75837062 None:intergenic 30.0%
GATGAATAATTAAAAGCGGT+GGG + chr7_3:75837104-75837123 None:intergenic 30.0%
TGATGAATAATTAAAAGCGG+TGG + chr7_3:75837105-75837124 None:intergenic 30.0%
CAGAAACTATGAGATTTGAT+TGG + chr7_3:75837409-75837428 None:intergenic 30.0%
!! TGGTGTAAAGGCTTTTAAAA+CGG + chr7_3:75837711-75837730 None:intergenic 30.0%
TAAGAATGAAGGATTGACAA+TGG - chr7_3:75837927-75837946 Msa1124670:intron 30.0%
TTTCTTCTCCTTGCATTTAA+AGG + chr7_3:75838036-75838055 None:intergenic 30.0%
TTAAATGCAAGGAGAAGAAA+AGG - chr7_3:75838036-75838055 Msa1124670:CDS 30.0%
! AAGAAAAGGTATACCTCATA+GGG - chr7_3:75838050-75838069 Msa1124670:CDS 30.0%
!!! TTTTGGTTCCTCATTCTAAT+GGG - chr7_3:75838077-75838096 Msa1124670:CDS 30.0%
!!! GTACCAATTTTGAGTTTAGA+AGG + chr7_3:75838111-75838130 None:intergenic 30.0%
GAATACAATACAACCCTATT+TGG - chr7_3:75838158-75838177 Msa1124670:intron 30.0%
GATTTGGAAAAGTAAAGGAA+AGG - chr7_3:75838276-75838295 Msa1124670:five_prime_UTR 30.0%
! AAGTAAAGGAAAGGGTATAT+AGG - chr7_3:75838285-75838304 Msa1124670:five_prime_UTR 30.0%
!!! GGGAGGATTTGTTTTTTTTA+GGG + chr7_3:75838341-75838360 None:intergenic 30.0%
!!! AGGGAGGATTTGTTTTTTTT+AGG + chr7_3:75838342-75838361 None:intergenic 30.0%
!! CATTATTGATTCTTGGACAA+GGG + chr7_3:75838361-75838380 None:intergenic 30.0%
AGTGTAATAGGGACGAAAAA+GGG + chr7_3:75835924-75835943 None:intergenic 35.0%
TAGTGTAATAGGGACGAAAA+AGG + chr7_3:75835925-75835944 None:intergenic 35.0%
! GTCGTTGAATTCTAAGTTGA+AGG - chr7_3:75835966-75835985 Msa1124670:three_prime_UTR 35.0%
!! TACCATTGTGGTTGATAATG+TGG + chr7_3:75836094-75836113 None:intergenic 35.0%
! ATGGGTCAAATGTTTGAAAC+AGG - chr7_3:75836197-75836216 Msa1124670:three_prime_UTR 35.0%
!! CACCGTTTTTCAACATTTGT+CGG - chr7_3:75836262-75836281 Msa1124670:CDS 35.0%
TTAGATTGCAACAATGGTGA+TGG - chr7_3:75836327-75836346 Msa1124670:CDS 35.0%
TTACTACCTGAATGACTTGA+TGG + chr7_3:75836392-75836411 None:intergenic 35.0%
! AATGCCTATATTTTGCCGTT+AGG + chr7_3:75836436-75836455 None:intergenic 35.0%
GGCATTGCAGATTCAAAAAA+TGG - chr7_3:75836450-75836469 Msa1124670:intron 35.0%
ACATTTGTGAGATTTGTGGA+AGG - chr7_3:75836818-75836837 Msa1124670:intron 35.0%
TTCATTTCGGTTCTGTTCTT+TGG - chr7_3:75836852-75836871 Msa1124670:intron 35.0%
TCATTTCGGTTCTGTTCTTT+GGG - chr7_3:75836853-75836872 Msa1124670:intron 35.0%
! CAAATGTAGGTGATGATGTA+TGG + chr7_3:75837044-75837063 None:intergenic 35.0%
! TGATGTTGAATGATGGAGAT+GGG + chr7_3:75837071-75837090 None:intergenic 35.0%
! ATGATGTTGAATGATGGAGA+TGG + chr7_3:75837072-75837091 None:intergenic 35.0%
TATATACCACGTTGGTGTAA+AGG + chr7_3:75837723-75837742 None:intergenic 35.0%
! ATATATTCTGCTGCATTGAC+AGG - chr7_3:75837769-75837788 Msa1124670:intron 35.0%
! TATATTCTGCTGCATTGACA+GGG - chr7_3:75837770-75837789 Msa1124670:intron 35.0%
AATGAAGGATTGACAATGGA+AGG - chr7_3:75837931-75837950 Msa1124670:intron 35.0%
! GAAGAAAAGGTATACCTCAT+AGG - chr7_3:75838049-75838068 Msa1124670:CDS 35.0%
CATTAGAATGAGGAACCAAA+AGG + chr7_3:75838078-75838097 None:intergenic 35.0%
!!! CTTTTGGTTCCTCATTCTAA+TGG - chr7_3:75838076-75838095 Msa1124670:CDS 35.0%
AGGGTTGTATTGTATTCCAA+GGG + chr7_3:75838155-75838174 None:intergenic 35.0%
TAGGGTTGTATTGTATTCCA+AGG + chr7_3:75838156-75838175 None:intergenic 35.0%
TACAATACAACCCTATTTGG+TGG - chr7_3:75838161-75838180 Msa1124670:intron 35.0%
ACAATACAACCCTATTTGGT+GGG - chr7_3:75838162-75838181 Msa1124670:intron 35.0%
! TAGGTTTTTCCCACCAAATA+GGG + chr7_3:75838174-75838193 None:intergenic 35.0%
TGAAAAAGATTAGGAGCCTT+TGG - chr7_3:75838227-75838246 Msa1124670:intron 35.0%
! TTCCAAATCATGAAGTACCT+TGG + chr7_3:75838265-75838284 None:intergenic 35.0%
!!! AAACTCCTTCTTTTTCGGTT+TGG - chr7_3:75838313-75838332 Msa1124670:five_prime_UTR 35.0%
!!! AACTCCTTCTTTTTCGGTTT+GGG - chr7_3:75838314-75838333 Msa1124670:five_prime_UTR 35.0%
!! GCATTATTGATTCTTGGACA+AGG + chr7_3:75838362-75838381 None:intergenic 35.0%
!! TGGATGATGGAAGATGAGAT+TGG + chr7_3:75835828-75835847 None:intergenic 40.0%
AGAGAGAGAGAGAGAGTAAA+CGG + chr7_3:75835992-75836011 None:intergenic 40.0%
TGGGATTTGGATTCAATGGA+CGG + chr7_3:75836061-75836080 None:intergenic 40.0%
!! GTTGATAATGTGGCTCAATG+CGG + chr7_3:75836084-75836103 None:intergenic 40.0%
AGCCACATTATCAACCACAA+TGG - chr7_3:75836089-75836108 Msa1124670:three_prime_UTR 40.0%
! TTTGAAACAGGACACAGTGT+TGG - chr7_3:75836209-75836228 Msa1124670:three_prime_UTR 40.0%
TTCAACAATGGTTCAAGCCA+AGG + chr7_3:75836240-75836259 None:intergenic 40.0%
CAAAGACCATCAAGTCATTC+AGG - chr7_3:75836383-75836402 Msa1124670:CDS 40.0%
! GTCAGAGATTCAGAAAGTGT+TGG - chr7_3:75836702-75836721 Msa1124670:intron 40.0%
!! CAGAAAGTGTTGGACATTAG+TGG - chr7_3:75836712-75836731 Msa1124670:intron 40.0%
TTAGGCCTCAACCAAAATCT+GGG - chr7_3:75836782-75836801 Msa1124670:intron 40.0%
GCTCACATTTGTGAGATTTG+TGG - chr7_3:75836814-75836833 Msa1124670:intron 40.0%
!! GGAGCTTGTTGGATTCATTT+CGG - chr7_3:75836839-75836858 Msa1124670:intron 40.0%
!! GTTCTGTTCTTTGGGATGTA+AGG - chr7_3:75836861-75836880 Msa1124670:intron 40.0%
TAAAAGCCTTTACACCAACG+TGG - chr7_3:75837714-75837733 Msa1124670:intron 40.0%
! ATATTCTGCTGCATTGACAG+GGG - chr7_3:75837771-75837790 Msa1124670:intron 40.0%
TCAGAAGAAGAATTGCGTGA+AGG - chr7_3:75837970-75837989 Msa1124670:CDS 40.0%
CTTCTCCTTGCATTTAAAGG+AGG + chr7_3:75838033-75838052 None:intergenic 40.0%
GTTCCTCATTCTAATGGGAT+GGG - chr7_3:75838082-75838101 Msa1124670:CDS 40.0%
AATCCCATCCCATTAGAATG+AGG + chr7_3:75838088-75838107 None:intergenic 40.0%
! CTAGGTTTTTCCCACCAAAT+AGG + chr7_3:75838175-75838194 None:intergenic 40.0%
AAAAGATTAGGAGCCTTTGG+AGG - chr7_3:75838230-75838249 Msa1124670:intron 40.0%
AAAGATTAGGAGCCTTTGGA+GGG - chr7_3:75838231-75838250 Msa1124670:intron 40.0%
! GTCCAAGGTACTTCATGATT+TGG - chr7_3:75838260-75838279 Msa1124670:five_prime_UTR 40.0%
!! TATTGATTCTTGGACAAGGG+AGG + chr7_3:75838358-75838377 None:intergenic 40.0%
AGATTGAAAGTGGTGGCTGA+GGG + chr7_3:75835865-75835884 None:intergenic 45.0%
ACGGATGAGATTGAAAGTGG+TGG + chr7_3:75835872-75835891 None:intergenic 45.0%
TGGACGGATGAGATTGAAAG+TGG + chr7_3:75835875-75835894 None:intergenic 45.0%
GGATTCAATGGACGGAGATT+TGG + chr7_3:75836053-75836072 None:intergenic 45.0%
ATAATGTGGCTCAATGCGGT+GGG + chr7_3:75836080-75836099 None:intergenic 45.0%
AACAATGGTTCAAGCCAAGG+AGG + chr7_3:75836237-75836256 None:intergenic 45.0%
! TGTATTTGGTGGAATGGGTC+AGG - chr7_3:75836523-75836542 Msa1124670:intron 45.0%
GTTAGGCCTCAACCAAAATC+TGG - chr7_3:75836781-75836800 Msa1124670:intron 45.0%
!!! CCTTTCCCAGATTTTGGTTG+AGG + chr7_3:75836790-75836809 None:intergenic 45.0%
CCTCAACCAAAATCTGGGAA+AGG - chr7_3:75836787-75836806 Msa1124670:intron 45.0%
! GCTACTCCTTTCCCAGATTT+TGG + chr7_3:75836796-75836815 None:intergenic 45.0%
GATTTGTGGAAGGAGCTTGT+TGG - chr7_3:75836828-75836847 Msa1124670:intron 45.0%
! TGTAGGTGATGATGTATGGG+TGG + chr7_3:75837040-75837059 None:intergenic 45.0%
! GGAGATGGGCTTTCAAATGT+AGG + chr7_3:75837057-75837076 None:intergenic 45.0%
TGGAGATGCAAGCTTTGCTT+TGG - chr7_3:75837900-75837919 Msa1124670:intron 45.0%
AGATGCAAGCTTTGCTTTGG+AGG - chr7_3:75837903-75837922 Msa1124670:intron 45.0%
! GATGCAAGCTTTGCTTTGGA+GGG - chr7_3:75837904-75837923 Msa1124670:intron 45.0%
!! GCTTTGGAGGGTAAGAATGA+AGG - chr7_3:75837916-75837935 Msa1124670:intron 45.0%
CTTGCATTTAAAGGAGGTGG+AGG + chr7_3:75838027-75838046 None:intergenic 45.0%
CTCCACCTCCTTTAAATGCA+AGG - chr7_3:75838025-75838044 Msa1124670:CDS 45.0%
CTCCTTGCATTTAAAGGAGG+TGG + chr7_3:75838030-75838049 None:intergenic 45.0%
!! ATACCTCATAGGGCACCTTT+TGG - chr7_3:75838060-75838079 Msa1124670:CDS 45.0%
GGTTCCTCATTCTAATGGGA+TGG - chr7_3:75838081-75838100 Msa1124670:CDS 45.0%
! AAGATTAGGAGCCTTTGGAG+GGG - chr7_3:75838232-75838251 Msa1124670:intron 45.0%
TCATTGTCCCACCATTCACA+TGG - chr7_3:75838487-75838506 Msa1124670:five_prime_UTR 45.0%
CATTGTCCCACCATTCACAT+GGG - chr7_3:75838488-75838507 Msa1124670:five_prime_UTR 45.0%
ATGTAAACGGCCCATGTGAA+TGG + chr7_3:75838501-75838520 None:intergenic 45.0%
!!! TTTTTTTTTATTAATGTATT+TGG - chr7_3:75836509-75836528 Msa1124670:intron 5.0%
GGATTGTGGACGTTGGATGA+TGG + chr7_3:75835841-75835860 None:intergenic 50.0%
ATTGAAAGTGGTGGCTGAGG+GGG + chr7_3:75835863-75835882 None:intergenic 50.0%
GATTGAAAGTGGTGGCTGAG+GGG + chr7_3:75835864-75835883 None:intergenic 50.0%
GAGATTGAAAGTGGTGGCTG+AGG + chr7_3:75835866-75835885 None:intergenic 50.0%
CAATGGACGGAGATTTGGAG+AGG + chr7_3:75836048-75836067 None:intergenic 50.0%
GCGGTGGGATTTGGATTCAA+TGG + chr7_3:75836065-75836084 None:intergenic 50.0%
GATAATGTGGCTCAATGCGG+TGG + chr7_3:75836081-75836100 None:intergenic 50.0%
!! ACACAGTGTTGGTACCTCCT+TGG - chr7_3:75836220-75836239 Msa1124670:three_prime_UTR 50.0%
! GGTGATGATGTATGGGTGGT+GGG + chr7_3:75837036-75837055 None:intergenic 50.0%
! AGGTGATGATGTATGGGTGG+TGG + chr7_3:75837037-75837056 None:intergenic 50.0%
GCATTTAAAGGAGGTGGAGG+AGG + chr7_3:75838024-75838043 None:intergenic 50.0%
!! GAACCAAAAGGTGCCCTATG+AGG + chr7_3:75838066-75838085 None:intergenic 50.0%
! AGATTAGGAGCCTTTGGAGG+GGG - chr7_3:75838233-75838252 Msa1124670:intron 50.0%
TTGGACAAAACCCCCTCCAA+AGG + chr7_3:75838246-75838265 None:intergenic 50.0%
!! TTTGGAGGGGGTTTTGTCCA+AGG - chr7_3:75838245-75838264 Msa1124670:five_prime_UTR 50.0%
GGGACCCAAACCGAAAAAGA+AGG + chr7_3:75838321-75838340 None:intergenic 50.0%
AAACGGCCCATGTGAATGGT+GGG + chr7_3:75838497-75838516 None:intergenic 50.0%
TAAACGGCCCATGTGAATGG+TGG + chr7_3:75838498-75838517 None:intergenic 50.0%
TTGAAAGTGGTGGCTGAGGG+GGG + chr7_3:75835862-75835881 None:intergenic 55.0%
TGGCTCAATGCGGTGGGATT+TGG + chr7_3:75836074-75836093 None:intergenic 55.0%
! GCTGCATTGACAGGGGAACA+TGG - chr7_3:75837778-75837797 Msa1124670:intron 55.0%
TGAGGGGGGATTGTGGACGT+TGG + chr7_3:75835848-75835867 None:intergenic 60.0%
TGGTGGCTGAGGGGGGATTG+TGG + chr7_3:75835855-75835874 None:intergenic 65.0%
! GGAGGTGGAGGAGGCGTGAG+AGG + chr7_3:75838015-75838034 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 75835823 75838522 75835823 ID=Msa1124670;Name=Msa1124670
chr7_3 mRNA 75835823 75838522 75835823 ID=Msa1124670-mRNA-1;Parent=Msa1124670;Name=Msa1124670-mRNA-1;_AED=0.09;_eAED=0.09;_QI=285|1|1|1|1|1|4|427|206
chr7_3 exon 75835823 75836465 75835823 ID=Msa1124670-mRNA-1:exon:20541;Parent=Msa1124670-mRNA-1
chr7_3 exon 75837463 75837678 75837463 ID=Msa1124670-mRNA-1:exon:20540;Parent=Msa1124670-mRNA-1
chr7_3 exon 75837941 75838126 75837941 ID=Msa1124670-mRNA-1:exon:20539;Parent=Msa1124670-mRNA-1
chr7_3 exon 75838235 75838522 75838235 ID=Msa1124670-mRNA-1:exon:20538;Parent=Msa1124670-mRNA-1
chr7_3 five_prime_UTR 75838238 75838522 75838238 ID=Msa1124670-mRNA-1:five_prime_utr;Parent=Msa1124670-mRNA-1
chr7_3 CDS 75838235 75838237 75838235 ID=Msa1124670-mRNA-1:cds;Parent=Msa1124670-mRNA-1
chr7_3 CDS 75837941 75838126 75837941 ID=Msa1124670-mRNA-1:cds;Parent=Msa1124670-mRNA-1
chr7_3 CDS 75837463 75837678 75837463 ID=Msa1124670-mRNA-1:cds;Parent=Msa1124670-mRNA-1
chr7_3 CDS 75836250 75836465 75836250 ID=Msa1124670-mRNA-1:cds;Parent=Msa1124670-mRNA-1
chr7_3 three_prime_UTR 75835823 75836249 75835823 ID=Msa1124670-mRNA-1:three_prime_utr;Parent=Msa1124670-mRNA-1
Gene Sequence

>Msa1124670

ATGGACACAGTGTTGGTACCTCCTTGGCTTGAACCATTGTTGAAAACACCGTTTTTCAACATTTGTCGGATTCACGCTGATGCAGCTAGAAATGAGTGTAACATGTATTGTTTAGATTGCAACAATGGTGATGGTGCTTTTTGCTTTTATTGTCGTTCTTCAAGACACAAAGACCATCAAGTCATTCAGATAAGAAGATCTTCATATCACGATGTAGTTCGTGTGTCAGAGATTCAGAAAGTGTTGGACATTAGTGGAGTGCAAACATATGTGATAAACAGTGCTAGAGTTTTGTTCTTGAATGTTAGGCCTCAACCAAAATCTGGGAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGGAGCTTGTTGGATTCATTTCGGTTCTGTTCTTTGGGATGTAAGCTTGAAAGAATAAAGAAAAATGGAGATGCAAGCTTTGCTTTGGAGGGTAAGAATGAAGGATTGACAATGGAAGGAGTGTCAAGTAGTAGATCAGAAGAAGAATTGCGTGAAGGCTCAACACAAGTTATGTATCCTCTCACGCCTCCTCCACCTCCTTTAAATGCAAGGAGAAGAAAAGGTATACCTCATAGGGCACCTTTTGGTTCCTCATTCTAA
Protein sequence

>Msa1124670

MDTVLVPPWLEPLLKTPFFNICRIHADAARNECNMYCLDCNNGDGAFCFYCRSSRHKDHQVIQIRRSSYHDVVRVSEIQKVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDSFRFCSLGCKLERIKKNGDASFALEGKNEGLTMEGVSSSRSEEELREGSTQVMYPLTPPPPPLNARRRKGIPHRAPFGSSF*