Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124870 | KEH24074.1 | 60.870 | 92 | 30 | 2 | 33 | 118 | 324 | 415 | 1.04e-17 | 89.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124870 | A0A072U302 | 60.870 | 92 | 30 | 2 | 33 | 118 | 324 | 415 | 4.95e-18 | 89.0 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124870 | MtrunA17_Chr7g0265391 | 60.870 | 92 | 30 | 2 | 33 | 118 | 324 | 415 | 1.41e-21 | 88.6 |
| Msa1124870 | MtrunA17_Chr7g0265391 | 77.500 | 40 | 9 | 0 | 20 | 59 | 167 | 206 | 3.62e-14 | 67.4 |
| Msa1124870 | MtrunA17_Chr3g0112391 | 48.571 | 70 | 33 | 1 | 52 | 118 | 344 | 413 | 1.27e-11 | 60.1 |
| Msa1124870 | MtrunA17_Chr3g0125491 | 35.955 | 89 | 54 | 1 | 33 | 118 | 38 | 126 | 5.86e-11 | 58.2 |
| Msa1124870 | MtrunA17_Chr3g0125461 | 34.906 | 106 | 62 | 2 | 16 | 118 | 412 | 513 | 9.59e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124870 | AT3G53840.1 | 45.714 | 70 | 35 | 1 | 52 | 118 | 354 | 423 | 5.68e-11 | 58.5 |
Find 23 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGACCCAAGATCGATAT+TGG | 0.297523 | 7_3:-76111396 | None:intergenic |
| TCTTAGGAAGTGGTTGCTTT+GGG | 0.308970 | 7_3:+76112579 | Msa1124870:CDS |
| ATCTTAGGAAGTGGTTGCTT+TGG | 0.331108 | 7_3:+76112578 | Msa1124870:CDS |
| CAATATCGATCTTGGGTCAT+TGG | 0.367145 | 7_3:+76111397 | Msa1124870:CDS |
| TTGGGAACCAATATCGATCT+TGG | 0.374912 | 7_3:+76111389 | Msa1124870:CDS |
| AAGATTCACCTTTACAATTC+CGG | 0.428868 | 7_3:+76111508 | Msa1124870:CDS |
| GCTTCTGAATGCTTTGCAAC+CGG | 0.438254 | 7_3:-76111527 | None:intergenic |
| AAACCTCATTATGCACTAGT+TGG | 0.453543 | 7_3:-76112679 | None:intergenic |
| TGGGAACCAATATCGATCTT+GGG | 0.480296 | 7_3:+76111390 | Msa1124870:CDS |
| CGTTGCACATTTGTTTCTAG+TGG | 0.482916 | 7_3:+76111469 | Msa1124870:CDS |
| GCAATCACAAGAACCTAGTC+AGG | 0.491400 | 7_3:+76112717 | Msa1124870:CDS |
| CTTTGCAACCGGAATTGTAA+AGG | 0.495267 | 7_3:-76111516 | None:intergenic |
| CACAACAGCATCTTAGGAAG+TGG | 0.538457 | 7_3:+76112569 | Msa1124870:intron |
| AGGTGAATCTTGTAAGCTGA+AGG | 0.555983 | 7_3:-76111496 | None:intergenic |
| AACCTCATTATGCACTAGTT+GGG | 0.559284 | 7_3:-76112678 | None:intergenic |
| CTTAGGAAGTGGTTGCTTTG+GGG | 0.590416 | 7_3:+76112580 | Msa1124870:CDS |
| GTCATTGGAATGCTAGTCAA+AGG | 0.599569 | 7_3:+76111412 | Msa1124870:CDS |
| CACCCAACTAGTGCATAATG+AGG | 0.609291 | 7_3:+76112676 | Msa1124870:CDS |
| GCTGTCAAGAAAGCGAGAGT+TGG | 0.613643 | 7_3:+76112641 | Msa1124870:CDS |
| AGCTTATCAGAATGTGCAAG+TGG | 0.617147 | 7_3:+76111436 | Msa1124870:CDS |
| ATTCTACATAAAGCCTGACT+AGG | 0.632184 | 7_3:-76112730 | None:intergenic |
| TAGAAACAAATGTGCAACGA+GGG | 0.648929 | 7_3:-76111465 | None:intergenic |
| CTAGAAACAAATGTGCAACG+AGG | 0.725748 | 7_3:-76111466 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTAGTTATTTTGATCCTT+TGG | + | chr7_3:76112114-76112133 | Msa1124870:intron | 25.0% |
| ! | TTTGTAATAGTGATTCTGTT+GGG | + | chr7_3:76112375-76112394 | Msa1124870:intron | 25.0% |
| !!! | AGTTAGTTATTTTGATCCTT+TGG | + | chr7_3:76112114-76112133 | Msa1124870:intron | 25.0% |
| ! | TTTGTAATAGTGATTCTGTT+GGG | + | chr7_3:76112375-76112394 | Msa1124870:intron | 25.0% |
| AAGATTCACCTTTACAATTC+CGG | + | chr7_3:76111508-76111527 | Msa1124870:CDS | 30.0% | |
| TTGTTAGAGTTACGCTATTT+CGG | + | chr7_3:76111886-76111905 | Msa1124870:intron | 30.0% | |
| AAAAAAGACGCTACTACAAT+GGG | - | chr7_3:76111913-76111932 | None:intergenic | 30.0% | |
| TGTACGCTTTGTATGATATA+AGG | + | chr7_3:76111943-76111962 | Msa1124870:intron | 30.0% | |
| ATAACTAACTCAACGCTAAA+GGG | - | chr7_3:76112104-76112123 | None:intergenic | 30.0% | |
| AATAACTAACTCAACGCTAA+AGG | - | chr7_3:76112105-76112124 | None:intergenic | 30.0% | |
| CTTTGTAATAGTGATTCTGT+TGG | + | chr7_3:76112374-76112393 | Msa1124870:intron | 30.0% | |
| AAGATTCACCTTTACAATTC+CGG | + | chr7_3:76111508-76111527 | Msa1124870:CDS | 30.0% | |
| TTGTTAGAGTTACGCTATTT+CGG | + | chr7_3:76111886-76111905 | Msa1124870:intron | 30.0% | |
| AAAAAAGACGCTACTACAAT+GGG | - | chr7_3:76111913-76111932 | None:intergenic | 30.0% | |
| TGTACGCTTTGTATGATATA+AGG | + | chr7_3:76111943-76111962 | Msa1124870:intron | 30.0% | |
| ATAACTAACTCAACGCTAAA+GGG | - | chr7_3:76112104-76112123 | None:intergenic | 30.0% | |
| AATAACTAACTCAACGCTAA+AGG | - | chr7_3:76112105-76112124 | None:intergenic | 30.0% | |
| CTTTGTAATAGTGATTCTGT+TGG | + | chr7_3:76112374-76112393 | Msa1124870:intron | 30.0% | |
| TAGAAACAAATGTGCAACGA+GGG | - | chr7_3:76111468-76111487 | None:intergenic | 35.0% | |
| !! | TCTGTTTCTGAGTCATTACA+GGG | - | chr7_3:76111554-76111573 | None:intergenic | 35.0% |
| !! | ATCTGTTTCTGAGTCATTAC+AGG | - | chr7_3:76111555-76111574 | None:intergenic | 35.0% |
| GACTCAGAAACAGATTGAAA+TGG | + | chr7_3:76111560-76111579 | Msa1124870:intron | 35.0% | |
| ! | GTCTTTTTCTGCGTGTTTTT+TGG | + | chr7_3:76111763-76111782 | Msa1124870:intron | 35.0% |
| !! | TTTTTCTGCGTGTTTTTTGG+TGG | + | chr7_3:76111766-76111785 | Msa1124870:intron | 35.0% |
| !!! | CGTGTTTTTTGGTGGTTTTT+GGG | + | chr7_3:76111774-76111793 | Msa1124870:intron | 35.0% |
| ! | TGTTAGAGTTACGCTATTTC+GGG | + | chr7_3:76111887-76111906 | Msa1124870:intron | 35.0% |
| CAAAAAAGACGCTACTACAA+TGG | - | chr7_3:76111914-76111933 | None:intergenic | 35.0% | |
| TCATACAAAGCGTACAATAG+CGG | - | chr7_3:76111939-76111958 | None:intergenic | 35.0% | |
| ACGCTTTGTATGATATAAGG+AGG | + | chr7_3:76111946-76111965 | Msa1124870:intron | 35.0% | |
| !!! | TGATGTACTTTTTCGCACTT+AGG | - | chr7_3:76112073-76112092 | None:intergenic | 35.0% |
| !!! | AGGAATCATTTTGGTTAGGA+AGG | - | chr7_3:76112169-76112188 | None:intergenic | 35.0% |
| TCCTAACCAAAATGATTCCT+TGG | + | chr7_3:76112169-76112188 | Msa1124870:intron | 35.0% | |
| CCTAACCAAAATGATTCCTT+GGG | + | chr7_3:76112170-76112189 | Msa1124870:intron | 35.0% | |
| CTAACCAAAATGATTCCTTG+GGG | + | chr7_3:76112171-76112190 | Msa1124870:intron | 35.0% | |
| GTCCTTATACATCCTTCATT+TGG | + | chr7_3:76112211-76112230 | Msa1124870:intron | 35.0% | |
| TTGATTAGGAGGTTTGTCTT+GGG | - | chr7_3:76112237-76112256 | None:intergenic | 35.0% | |
| AAGACAAACCTCCTAATCAA+GGG | + | chr7_3:76112237-76112256 | Msa1124870:intron | 35.0% | |
| ! | CTCTTTTGCTTTCTTCTCAT+TGG | + | chr7_3:76112399-76112418 | Msa1124870:intron | 35.0% |
| GTCAGTTGAAACATCGTATA+AGG | - | chr7_3:76112518-76112537 | None:intergenic | 35.0% | |
| ! | TTTTCACACAACAGCATCTT+AGG | + | chr7_3:76112563-76112582 | Msa1124870:intron | 35.0% |
| AACCTCATTATGCACTAGTT+GGG | - | chr7_3:76112681-76112700 | None:intergenic | 35.0% | |
| AAACCTCATTATGCACTAGT+TGG | - | chr7_3:76112682-76112701 | None:intergenic | 35.0% | |
| ATTCTACATAAAGCCTGACT+AGG | - | chr7_3:76112733-76112752 | None:intergenic | 35.0% | |
| TAGAAACAAATGTGCAACGA+GGG | - | chr7_3:76111468-76111487 | None:intergenic | 35.0% | |
| !! | TCTGTTTCTGAGTCATTACA+GGG | - | chr7_3:76111554-76111573 | None:intergenic | 35.0% |
| !! | ATCTGTTTCTGAGTCATTAC+AGG | - | chr7_3:76111555-76111574 | None:intergenic | 35.0% |
| GACTCAGAAACAGATTGAAA+TGG | + | chr7_3:76111560-76111579 | Msa1124870:intron | 35.0% | |
| ! | GTCTTTTTCTGCGTGTTTTT+TGG | + | chr7_3:76111763-76111782 | Msa1124870:intron | 35.0% |
| !! | TTTTTCTGCGTGTTTTTTGG+TGG | + | chr7_3:76111766-76111785 | Msa1124870:intron | 35.0% |
| !!! | CGTGTTTTTTGGTGGTTTTT+GGG | + | chr7_3:76111774-76111793 | Msa1124870:intron | 35.0% |
| ! | TGTTAGAGTTACGCTATTTC+GGG | + | chr7_3:76111887-76111906 | Msa1124870:intron | 35.0% |
| CAAAAAAGACGCTACTACAA+TGG | - | chr7_3:76111914-76111933 | None:intergenic | 35.0% | |
| TCATACAAAGCGTACAATAG+CGG | - | chr7_3:76111939-76111958 | None:intergenic | 35.0% | |
| ACGCTTTGTATGATATAAGG+AGG | + | chr7_3:76111946-76111965 | Msa1124870:intron | 35.0% | |
| !!! | TGATGTACTTTTTCGCACTT+AGG | - | chr7_3:76112073-76112092 | None:intergenic | 35.0% |
| !!! | AGGAATCATTTTGGTTAGGA+AGG | - | chr7_3:76112169-76112188 | None:intergenic | 35.0% |
| TCCTAACCAAAATGATTCCT+TGG | + | chr7_3:76112169-76112188 | Msa1124870:intron | 35.0% | |
| CCTAACCAAAATGATTCCTT+GGG | + | chr7_3:76112170-76112189 | Msa1124870:intron | 35.0% | |
| CTAACCAAAATGATTCCTTG+GGG | + | chr7_3:76112171-76112190 | Msa1124870:intron | 35.0% | |
| GTCCTTATACATCCTTCATT+TGG | + | chr7_3:76112211-76112230 | Msa1124870:intron | 35.0% | |
| TTGATTAGGAGGTTTGTCTT+GGG | - | chr7_3:76112237-76112256 | None:intergenic | 35.0% | |
| AAGACAAACCTCCTAATCAA+GGG | + | chr7_3:76112237-76112256 | Msa1124870:intron | 35.0% | |
| ! | CTCTTTTGCTTTCTTCTCAT+TGG | + | chr7_3:76112399-76112418 | Msa1124870:intron | 35.0% |
| GTCAGTTGAAACATCGTATA+AGG | - | chr7_3:76112518-76112537 | None:intergenic | 35.0% | |
| ! | TTTTCACACAACAGCATCTT+AGG | + | chr7_3:76112563-76112582 | Msa1124870:intron | 35.0% |
| AACCTCATTATGCACTAGTT+GGG | - | chr7_3:76112681-76112700 | None:intergenic | 35.0% | |
| AAACCTCATTATGCACTAGT+TGG | - | chr7_3:76112682-76112701 | None:intergenic | 35.0% | |
| ATTCTACATAAAGCCTGACT+AGG | - | chr7_3:76112733-76112752 | None:intergenic | 35.0% | |
| TTGGGAACCAATATCGATCT+TGG | + | chr7_3:76111389-76111408 | Msa1124870:CDS | 40.0% | |
| TGGGAACCAATATCGATCTT+GGG | + | chr7_3:76111390-76111409 | Msa1124870:CDS | 40.0% | |
| CAATGACCCAAGATCGATAT+TGG | - | chr7_3:76111399-76111418 | None:intergenic | 40.0% | |
| CAATATCGATCTTGGGTCAT+TGG | + | chr7_3:76111397-76111416 | Msa1124870:CDS | 40.0% | |
| GTCATTGGAATGCTAGTCAA+AGG | + | chr7_3:76111412-76111431 | Msa1124870:CDS | 40.0% | |
| AGCTTATCAGAATGTGCAAG+TGG | + | chr7_3:76111436-76111455 | Msa1124870:CDS | 40.0% | |
| CTAGAAACAAATGTGCAACG+AGG | - | chr7_3:76111469-76111488 | None:intergenic | 40.0% | |
| !! | CGTTGCACATTTGTTTCTAG+TGG | + | chr7_3:76111469-76111488 | Msa1124870:CDS | 40.0% |
| AGGTGAATCTTGTAAGCTGA+AGG | - | chr7_3:76111499-76111518 | None:intergenic | 40.0% | |
| CTTTGCAACCGGAATTGTAA+AGG | - | chr7_3:76111519-76111538 | None:intergenic | 40.0% | |
| TAGTGATCACTGTGTTATCG+TGG | + | chr7_3:76111655-76111674 | Msa1124870:intron | 40.0% | |
| ! | CACTCATAGAAAAGGCATGA+GGG | - | chr7_3:76111708-76111727 | None:intergenic | 40.0% |
| ! | CCTTTTCTATGAGTGGAGTT+GGG | + | chr7_3:76111713-76111732 | Msa1124870:intron | 40.0% |
| CAGAAAAAGACCATCTAAGG+AGG | - | chr7_3:76111754-76111773 | None:intergenic | 40.0% | |
| ACGCAGAAAAAGACCATCTA+AGG | - | chr7_3:76111757-76111776 | None:intergenic | 40.0% | |
| !!! | GCGTGTTTTTTGGTGGTTTT+TGG | + | chr7_3:76111773-76111792 | Msa1124870:intron | 40.0% |
| AAAAACTGCAACCAACACAG+AGG | + | chr7_3:76112003-76112022 | Msa1124870:intron | 40.0% | |
| ! | GAAGTTCTTTTCCTCTGTGT+TGG | - | chr7_3:76112017-76112036 | None:intergenic | 40.0% |
| AGGAAAAGAACTTCTCACAC+AGG | + | chr7_3:76112023-76112042 | Msa1124870:intron | 40.0% | |
| AGAACTTCTCACACAGGATA+AGG | + | chr7_3:76112029-76112048 | Msa1124870:intron | 40.0% | |
| CACACAGGATAAGGTACAAA+CGG | + | chr7_3:76112038-76112057 | Msa1124870:intron | 40.0% | |
| TGGAAACATGAAAGAGCCAA+AGG | - | chr7_3:76112133-76112152 | None:intergenic | 40.0% | |
| ! | TTGGCTCTTTCATGTTTCCA+TGG | + | chr7_3:76112133-76112152 | Msa1124870:intron | 40.0% |
| TTCATGTTTCCATGGATTCC+CGG | + | chr7_3:76112141-76112160 | Msa1124870:intron | 40.0% | |
| !!! | ATTTTGGTTAGGAAGGTTCC+GGG | - | chr7_3:76112162-76112181 | None:intergenic | 40.0% |
| !!! | CATTTTGGTTAGGAAGGTTC+CGG | - | chr7_3:76112163-76112182 | None:intergenic | 40.0% |
| !!! | CCCAAGGAATCATTTTGGTT+AGG | - | chr7_3:76112173-76112192 | None:intergenic | 40.0% |
| TTGGGGTCCTATCAATCATT+GGG | + | chr7_3:76112188-76112207 | Msa1124870:intron | 40.0% | |
| TAAGGACCCCAATGATTGAT+AGG | - | chr7_3:76112198-76112217 | None:intergenic | 40.0% | |
| GGCCAAATGAAGGATGTATA+AGG | - | chr7_3:76112216-76112235 | None:intergenic | 40.0% | |
| CTTGATTAGGAGGTTTGTCT+TGG | - | chr7_3:76112238-76112257 | None:intergenic | 40.0% | |
| CAAGACAAACCTCCTAATCA+AGG | + | chr7_3:76112236-76112255 | Msa1124870:intron | 40.0% | |
| AGACAAACCTCCTAATCAAG+GGG | + | chr7_3:76112238-76112257 | Msa1124870:intron | 40.0% | |
| GAAGAGACCATCTAATCTGT+AGG | - | chr7_3:76112271-76112290 | None:intergenic | 40.0% | |
| ATCTTAGGAAGTGGTTGCTT+TGG | + | chr7_3:76112578-76112597 | Msa1124870:CDS | 40.0% | |
| ! | TCTTAGGAAGTGGTTGCTTT+GGG | + | chr7_3:76112579-76112598 | Msa1124870:CDS | 40.0% |
| TTGGGAACCAATATCGATCT+TGG | + | chr7_3:76111389-76111408 | Msa1124870:CDS | 40.0% | |
| TGGGAACCAATATCGATCTT+GGG | + | chr7_3:76111390-76111409 | Msa1124870:CDS | 40.0% | |
| CAATGACCCAAGATCGATAT+TGG | - | chr7_3:76111399-76111418 | None:intergenic | 40.0% | |
| CAATATCGATCTTGGGTCAT+TGG | + | chr7_3:76111397-76111416 | Msa1124870:CDS | 40.0% | |
| GTCATTGGAATGCTAGTCAA+AGG | + | chr7_3:76111412-76111431 | Msa1124870:CDS | 40.0% | |
| AGCTTATCAGAATGTGCAAG+TGG | + | chr7_3:76111436-76111455 | Msa1124870:CDS | 40.0% | |
| CTAGAAACAAATGTGCAACG+AGG | - | chr7_3:76111469-76111488 | None:intergenic | 40.0% | |
| !! | CGTTGCACATTTGTTTCTAG+TGG | + | chr7_3:76111469-76111488 | Msa1124870:CDS | 40.0% |
| AGGTGAATCTTGTAAGCTGA+AGG | - | chr7_3:76111499-76111518 | None:intergenic | 40.0% | |
| CTTTGCAACCGGAATTGTAA+AGG | - | chr7_3:76111519-76111538 | None:intergenic | 40.0% | |
| TAGTGATCACTGTGTTATCG+TGG | + | chr7_3:76111655-76111674 | Msa1124870:intron | 40.0% | |
| ! | CACTCATAGAAAAGGCATGA+GGG | - | chr7_3:76111708-76111727 | None:intergenic | 40.0% |
| ! | CCTTTTCTATGAGTGGAGTT+GGG | + | chr7_3:76111713-76111732 | Msa1124870:intron | 40.0% |
| CAGAAAAAGACCATCTAAGG+AGG | - | chr7_3:76111754-76111773 | None:intergenic | 40.0% | |
| ACGCAGAAAAAGACCATCTA+AGG | - | chr7_3:76111757-76111776 | None:intergenic | 40.0% | |
| !!! | GCGTGTTTTTTGGTGGTTTT+TGG | + | chr7_3:76111773-76111792 | Msa1124870:intron | 40.0% |
| AAAAACTGCAACCAACACAG+AGG | + | chr7_3:76112003-76112022 | Msa1124870:intron | 40.0% | |
| ! | GAAGTTCTTTTCCTCTGTGT+TGG | - | chr7_3:76112017-76112036 | None:intergenic | 40.0% |
| AGGAAAAGAACTTCTCACAC+AGG | + | chr7_3:76112023-76112042 | Msa1124870:intron | 40.0% | |
| AGAACTTCTCACACAGGATA+AGG | + | chr7_3:76112029-76112048 | Msa1124870:intron | 40.0% | |
| CACACAGGATAAGGTACAAA+CGG | + | chr7_3:76112038-76112057 | Msa1124870:intron | 40.0% | |
| TGGAAACATGAAAGAGCCAA+AGG | - | chr7_3:76112133-76112152 | None:intergenic | 40.0% | |
| ! | TTGGCTCTTTCATGTTTCCA+TGG | + | chr7_3:76112133-76112152 | Msa1124870:intron | 40.0% |
| TTCATGTTTCCATGGATTCC+CGG | + | chr7_3:76112141-76112160 | Msa1124870:intron | 40.0% | |
| !!! | ATTTTGGTTAGGAAGGTTCC+GGG | - | chr7_3:76112162-76112181 | None:intergenic | 40.0% |
| !!! | CATTTTGGTTAGGAAGGTTC+CGG | - | chr7_3:76112163-76112182 | None:intergenic | 40.0% |
| !!! | CCCAAGGAATCATTTTGGTT+AGG | - | chr7_3:76112173-76112192 | None:intergenic | 40.0% |
| TTGGGGTCCTATCAATCATT+GGG | + | chr7_3:76112188-76112207 | Msa1124870:intron | 40.0% | |
| TAAGGACCCCAATGATTGAT+AGG | - | chr7_3:76112198-76112217 | None:intergenic | 40.0% | |
| GGCCAAATGAAGGATGTATA+AGG | - | chr7_3:76112216-76112235 | None:intergenic | 40.0% | |
| CTTGATTAGGAGGTTTGTCT+TGG | - | chr7_3:76112238-76112257 | None:intergenic | 40.0% | |
| CAAGACAAACCTCCTAATCA+AGG | + | chr7_3:76112236-76112255 | Msa1124870:intron | 40.0% | |
| AGACAAACCTCCTAATCAAG+GGG | + | chr7_3:76112238-76112257 | Msa1124870:intron | 40.0% | |
| GAAGAGACCATCTAATCTGT+AGG | - | chr7_3:76112271-76112290 | None:intergenic | 40.0% | |
| ATCTTAGGAAGTGGTTGCTT+TGG | + | chr7_3:76112578-76112597 | Msa1124870:CDS | 40.0% | |
| ! | TCTTAGGAAGTGGTTGCTTT+GGG | + | chr7_3:76112579-76112598 | Msa1124870:CDS | 40.0% |
| GCTTCTGAATGCTTTGCAAC+CGG | - | chr7_3:76111530-76111549 | None:intergenic | 45.0% | |
| TCACTGTGTTATCGTGGCAA+TGG | + | chr7_3:76111661-76111680 | Msa1124870:intron | 45.0% | |
| ! | CCACTCATAGAAAAGGCATG+AGG | - | chr7_3:76111709-76111728 | None:intergenic | 45.0% |
| ! | CCTCATGCCTTTTCTATGAG+TGG | + | chr7_3:76111706-76111725 | Msa1124870:intron | 45.0% |
| ! | GCCTTTTCTATGAGTGGAGT+TGG | + | chr7_3:76111712-76111731 | Msa1124870:intron | 45.0% |
| CCCAACTCCACTCATAGAAA+AGG | - | chr7_3:76111716-76111735 | None:intergenic | 45.0% | |
| ATGAGTGGAGTTGGGATTCT+AGG | + | chr7_3:76111721-76111740 | Msa1124870:intron | 45.0% | |
| TGAGTGGAGTTGGGATTCTA+GGG | + | chr7_3:76111722-76111741 | Msa1124870:intron | 45.0% | |
| ! | AGGGATTTTGCCTCCTTAGA+TGG | + | chr7_3:76111741-76111760 | Msa1124870:intron | 45.0% |
| ! | AGGACCCCAAGGAATCATTT+TGG | - | chr7_3:76112178-76112197 | None:intergenic | 45.0% |
| CAATGATTGATAGGACCCCA+AGG | - | chr7_3:76112189-76112208 | None:intergenic | 45.0% | |
| CTTGGGGTCCTATCAATCAT+TGG | + | chr7_3:76112187-76112206 | Msa1124870:intron | 45.0% | |
| TGGGGTCCTATCAATCATTG+GGG | + | chr7_3:76112189-76112208 | Msa1124870:intron | 45.0% | |
| GTTTGTCTTGGGCCAAATGA+AGG | - | chr7_3:76112226-76112245 | None:intergenic | 45.0% | |
| AAACCTCCTAATCAAGGGGA+AGG | + | chr7_3:76112242-76112261 | Msa1124870:intron | 45.0% | |
| AAGGAGGCCTACAGATTAGA+TGG | + | chr7_3:76112261-76112280 | Msa1124870:intron | 45.0% | |
| TTGTGTCCTGCATACAGGTT+CGG | - | chr7_3:76112297-76112316 | None:intergenic | 45.0% | |
| AACCTGTATGCAGGACACAA+TGG | + | chr7_3:76112297-76112316 | Msa1124870:intron | 45.0% | |
| ACCTGTATGCAGGACACAAT+GGG | + | chr7_3:76112298-76112317 | Msa1124870:intron | 45.0% | |
| TGCATCGTCTCTACCAAAAG+GGG | - | chr7_3:76112346-76112365 | None:intergenic | 45.0% | |
| GTGCATCGTCTCTACCAAAA+GGG | - | chr7_3:76112347-76112366 | None:intergenic | 45.0% | |
| AGTGCATCGTCTCTACCAAA+AGG | - | chr7_3:76112348-76112367 | None:intergenic | 45.0% | |
| TGCTTTCTTCTCATTGGTCC+TGG | + | chr7_3:76112405-76112424 | Msa1124870:intron | 45.0% | |
| ! | GTCCTTCAAACGTTCTAAGC+AGG | + | chr7_3:76112445-76112464 | Msa1124870:intron | 45.0% |
| GACCTGCTTAGAACGTTTGA+AGG | - | chr7_3:76112450-76112469 | None:intergenic | 45.0% | |
| ! | CAAACGTTCTAAGCAGGTCA+AGG | + | chr7_3:76112451-76112470 | Msa1124870:intron | 45.0% |
| ATTGTGCAGAAATCAAGCGC+TGG | + | chr7_3:76112482-76112501 | Msa1124870:intron | 45.0% | |
| CACAACAGCATCTTAGGAAG+TGG | + | chr7_3:76112569-76112588 | Msa1124870:intron | 45.0% | |
| ! | CTTAGGAAGTGGTTGCTTTG+GGG | + | chr7_3:76112580-76112599 | Msa1124870:CDS | 45.0% |
| CACCCAACTAGTGCATAATG+AGG | + | chr7_3:76112676-76112695 | Msa1124870:CDS | 45.0% | |
| GCAATCACAAGAACCTAGTC+AGG | + | chr7_3:76112717-76112736 | Msa1124870:CDS | 45.0% | |
| GCTTCTGAATGCTTTGCAAC+CGG | - | chr7_3:76111530-76111549 | None:intergenic | 45.0% | |
| TCACTGTGTTATCGTGGCAA+TGG | + | chr7_3:76111661-76111680 | Msa1124870:intron | 45.0% | |
| ! | CCACTCATAGAAAAGGCATG+AGG | - | chr7_3:76111709-76111728 | None:intergenic | 45.0% |
| ! | CCTCATGCCTTTTCTATGAG+TGG | + | chr7_3:76111706-76111725 | Msa1124870:intron | 45.0% |
| ! | GCCTTTTCTATGAGTGGAGT+TGG | + | chr7_3:76111712-76111731 | Msa1124870:intron | 45.0% |
| CCCAACTCCACTCATAGAAA+AGG | - | chr7_3:76111716-76111735 | None:intergenic | 45.0% | |
| ATGAGTGGAGTTGGGATTCT+AGG | + | chr7_3:76111721-76111740 | Msa1124870:intron | 45.0% | |
| TGAGTGGAGTTGGGATTCTA+GGG | + | chr7_3:76111722-76111741 | Msa1124870:intron | 45.0% | |
| ! | AGGGATTTTGCCTCCTTAGA+TGG | + | chr7_3:76111741-76111760 | Msa1124870:intron | 45.0% |
| ! | AGGACCCCAAGGAATCATTT+TGG | - | chr7_3:76112178-76112197 | None:intergenic | 45.0% |
| CAATGATTGATAGGACCCCA+AGG | - | chr7_3:76112189-76112208 | None:intergenic | 45.0% | |
| CTTGGGGTCCTATCAATCAT+TGG | + | chr7_3:76112187-76112206 | Msa1124870:intron | 45.0% | |
| TGGGGTCCTATCAATCATTG+GGG | + | chr7_3:76112189-76112208 | Msa1124870:intron | 45.0% | |
| GTTTGTCTTGGGCCAAATGA+AGG | - | chr7_3:76112226-76112245 | None:intergenic | 45.0% | |
| AAACCTCCTAATCAAGGGGA+AGG | + | chr7_3:76112242-76112261 | Msa1124870:intron | 45.0% | |
| AAGGAGGCCTACAGATTAGA+TGG | + | chr7_3:76112261-76112280 | Msa1124870:intron | 45.0% | |
| TTGTGTCCTGCATACAGGTT+CGG | - | chr7_3:76112297-76112316 | None:intergenic | 45.0% | |
| AACCTGTATGCAGGACACAA+TGG | + | chr7_3:76112297-76112316 | Msa1124870:intron | 45.0% | |
| ACCTGTATGCAGGACACAAT+GGG | + | chr7_3:76112298-76112317 | Msa1124870:intron | 45.0% | |
| TGCATCGTCTCTACCAAAAG+GGG | - | chr7_3:76112346-76112365 | None:intergenic | 45.0% | |
| GTGCATCGTCTCTACCAAAA+GGG | - | chr7_3:76112347-76112366 | None:intergenic | 45.0% | |
| AGTGCATCGTCTCTACCAAA+AGG | - | chr7_3:76112348-76112367 | None:intergenic | 45.0% | |
| TGCTTTCTTCTCATTGGTCC+TGG | + | chr7_3:76112405-76112424 | Msa1124870:intron | 45.0% | |
| ! | GTCCTTCAAACGTTCTAAGC+AGG | + | chr7_3:76112445-76112464 | Msa1124870:intron | 45.0% |
| GACCTGCTTAGAACGTTTGA+AGG | - | chr7_3:76112450-76112469 | None:intergenic | 45.0% | |
| ! | CAAACGTTCTAAGCAGGTCA+AGG | + | chr7_3:76112451-76112470 | Msa1124870:intron | 45.0% |
| ATTGTGCAGAAATCAAGCGC+TGG | + | chr7_3:76112482-76112501 | Msa1124870:intron | 45.0% | |
| CACAACAGCATCTTAGGAAG+TGG | + | chr7_3:76112569-76112588 | Msa1124870:intron | 45.0% | |
| ! | CTTAGGAAGTGGTTGCTTTG+GGG | + | chr7_3:76112580-76112599 | Msa1124870:CDS | 45.0% |
| CACCCAACTAGTGCATAATG+AGG | + | chr7_3:76112676-76112695 | Msa1124870:CDS | 45.0% | |
| GCAATCACAAGAACCTAGTC+AGG | + | chr7_3:76112717-76112736 | Msa1124870:CDS | 45.0% | |
| ATAACTCACTCCTGCTCTCC+TGG | + | chr7_3:76111613-76111632 | Msa1124870:intron | 50.0% | |
| ! | CTCTCCTGGTGTATGGACTA+AGG | + | chr7_3:76111627-76111646 | Msa1124870:intron | 50.0% |
| ! | TCCTGGTGTATGGACTAAGG+AGG | + | chr7_3:76111630-76111649 | Msa1124870:intron | 50.0% |
| TCCTCCTTAGTCCATACACC+AGG | - | chr7_3:76111634-76111653 | None:intergenic | 50.0% | |
| !! | GGTTTTTGGGCGTTTGTTGC+TGG | + | chr7_3:76111787-76111806 | Msa1124870:intron | 50.0% |
| ! | TTTGTTGCTGGTCTGTGTCG+CGG | + | chr7_3:76111799-76111818 | Msa1124870:intron | 50.0% |
| TTCCATCCGAACCTGTATGC+AGG | + | chr7_3:76112288-76112307 | Msa1124870:intron | 50.0% | |
| TCCCATTGTGTCCTGCATAC+AGG | - | chr7_3:76112302-76112321 | None:intergenic | 50.0% | |
| ! | GAGACTCGATGTTCCCCTTT+TGG | + | chr7_3:76112330-76112349 | Msa1124870:intron | 50.0% |
| CAGCGATGATGACAAAGACC+AGG | - | chr7_3:76112426-76112445 | None:intergenic | 50.0% | |
| GCTGTCAAGAAAGCGAGAGT+TGG | + | chr7_3:76112641-76112660 | Msa1124870:CDS | 50.0% | |
| ATAACTCACTCCTGCTCTCC+TGG | + | chr7_3:76111613-76111632 | Msa1124870:intron | 50.0% | |
| ! | CTCTCCTGGTGTATGGACTA+AGG | + | chr7_3:76111627-76111646 | Msa1124870:intron | 50.0% |
| ! | TCCTGGTGTATGGACTAAGG+AGG | + | chr7_3:76111630-76111649 | Msa1124870:intron | 50.0% |
| TCCTCCTTAGTCCATACACC+AGG | - | chr7_3:76111634-76111653 | None:intergenic | 50.0% | |
| !! | GGTTTTTGGGCGTTTGTTGC+TGG | + | chr7_3:76111787-76111806 | Msa1124870:intron | 50.0% |
| ! | TTTGTTGCTGGTCTGTGTCG+CGG | + | chr7_3:76111799-76111818 | Msa1124870:intron | 50.0% |
| TTCCATCCGAACCTGTATGC+AGG | + | chr7_3:76112288-76112307 | Msa1124870:intron | 50.0% | |
| TCCCATTGTGTCCTGCATAC+AGG | - | chr7_3:76112302-76112321 | None:intergenic | 50.0% | |
| ! | GAGACTCGATGTTCCCCTTT+TGG | + | chr7_3:76112330-76112349 | Msa1124870:intron | 50.0% |
| CAGCGATGATGACAAAGACC+AGG | - | chr7_3:76112426-76112445 | None:intergenic | 50.0% | |
| GCTGTCAAGAAAGCGAGAGT+TGG | + | chr7_3:76112641-76112660 | Msa1124870:CDS | 50.0% | |
| ACTCCTGCTCTCCTGGTGTA+TGG | + | chr7_3:76111620-76111639 | Msa1124870:intron | 55.0% | |
| AGTCCATACACCAGGAGAGC+AGG | - | chr7_3:76111626-76111645 | None:intergenic | 55.0% | |
| AGGAAGGTTCCGGGAATCCA+TGG | - | chr7_3:76112153-76112172 | None:intergenic | 55.0% | |
| CCTCCTTCCCCTTGATTAGG+AGG | - | chr7_3:76112248-76112267 | None:intergenic | 55.0% | |
| CCTCCTAATCAAGGGGAAGG+AGG | + | chr7_3:76112245-76112264 | Msa1124870:intron | 55.0% | |
| AGGCCTCCTTCCCCTTGATT+AGG | - | chr7_3:76112251-76112270 | None:intergenic | 55.0% | |
| GTCCTGCATACAGGTTCGGA+TGG | - | chr7_3:76112293-76112312 | None:intergenic | 55.0% | |
| !! | GCAGAAATCAAGCGCTGGAG+AGG | + | chr7_3:76112487-76112506 | Msa1124870:intron | 55.0% |
| ACTCCTGCTCTCCTGGTGTA+TGG | + | chr7_3:76111620-76111639 | Msa1124870:intron | 55.0% | |
| AGTCCATACACCAGGAGAGC+AGG | - | chr7_3:76111626-76111645 | None:intergenic | 55.0% | |
| AGGAAGGTTCCGGGAATCCA+TGG | - | chr7_3:76112153-76112172 | None:intergenic | 55.0% | |
| CCTCCTTCCCCTTGATTAGG+AGG | - | chr7_3:76112248-76112267 | None:intergenic | 55.0% | |
| CCTCCTAATCAAGGGGAAGG+AGG | + | chr7_3:76112245-76112264 | Msa1124870:intron | 55.0% | |
| AGGCCTCCTTCCCCTTGATT+AGG | - | chr7_3:76112251-76112270 | None:intergenic | 55.0% | |
| GTCCTGCATACAGGTTCGGA+TGG | - | chr7_3:76112293-76112312 | None:intergenic | 55.0% | |
| !! | GCAGAAATCAAGCGCTGGAG+AGG | + | chr7_3:76112487-76112506 | Msa1124870:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 76111388 | 76112766 | 76111388 | ID=Msa1124870;Name=Msa1124870 |
| chr7_3 | mRNA | 76111388 | 76112766 | 76111388 | ID=Msa1124870-mRNA-1;Parent=Msa1124870;Name=Msa1124870-mRNA-1;_AED=0.46;_eAED=0.47;_QI=0|0|0|1|0|0.5|2|0|118 |
| chr7_3 | exon | 76111388 | 76111554 | 76111388 | ID=Msa1124870-mRNA-1:exon:20681;Parent=Msa1124870-mRNA-1 |
| chr7_3 | exon | 76112577 | 76112766 | 76112577 | ID=Msa1124870-mRNA-1:exon:20682;Parent=Msa1124870-mRNA-1 |
| chr7_3 | CDS | 76111388 | 76111554 | 76111388 | ID=Msa1124870-mRNA-1:cds;Parent=Msa1124870-mRNA-1 |
| chr7_3 | CDS | 76112577 | 76112766 | 76112577 | ID=Msa1124870-mRNA-1:cds;Parent=Msa1124870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
