AlfalfaGEDB | Msa1125590

M. sativa cultivar zhongmu-4 / Msa1125590

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1125590	KAE9617035.1	57.219	187	75	2	5	186	68	254	3.20e-63	210

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1125590	sp\|Q93YN1\|CRPK1_ARATH	52.406	187	82	2	4	183	64	250	7.50e-59	191

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1125590	A0A6A5PHY7	57.219	187	75	2	5	186	68	254	1.53e-63	210

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1125590	MtrunA17_Chr8g0360591	57.609	184	73	2	8	186	71	254	1.64e-65	206
Msa1125590	MtrunA17_Chr8g0358911	55.135	185	78	2	4	183	69	253	1.32e-62	198
Msa1125590	MtrunA17_Chr2g0312561	53.723	188	82	2	4	186	66	253	2.75e-59	189
Msa1125590	MtrunA17_Chr2g0312571	52.941	187	81	2	4	183	69	255	2.97e-58	189
Msa1125590	MtrunA17_Chr4g0047561	49.405	168	84	1	8	174	74	241	1.05e-49	164
Msa1125590	MtrunA17_Chr2g0314821	45.652	184	94	3	8	186	691	873	1.12e-45	160
Msa1125590	MtrunA17_Chr2g0314881	44.565	184	96	3	8	186	256	438	4.12e-45	156
Msa1125590	MtrunA17_Chr2g0314841	45.109	184	95	3	8	186	688	870	1.43e-44	157
Msa1125590	MtrunA17_Chr7g0242201	44.134	179	93	3	8	180	71	248	2.11e-44	150
Msa1125590	MtrunA17_Chr2g0315061	43.182	176	95	2	8	178	64	239	3.55e-44	150

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1125590	AT1G16670.1	52.406	187	82	2	4	183	64	250	7.63e-60	191
Msa1125590	AT3G09010.2	48.810	168	85	1	8	174	73	240	5.09e-49	161
Msa1125590	AT3G09010.1	48.810	168	85	1	8	174	73	240	2.79e-48	161
Msa1125590	AT1G56120.3	42.623	183	100	2	8	186	571	752	1.20e-44	157
Msa1125590	AT1G56130.3	42.162	185	102	2	4	184	518	701	1.28e-44	157
Msa1125590	AT1G56120.2	42.623	183	100	2	8	186	719	900	1.33e-44	157
Msa1125590	AT1G56120.1	42.623	183	100	2	8	186	737	918	1.34e-44	157
Msa1125590	AT1G56130.1	42.162	185	102	2	4	184	569	752	1.41e-44	157
Msa1125590	AT1G56130.2	42.162	185	102	2	4	184	717	900	1.56e-44	157
Msa1125590	AT1G53430.2	44.633	177	93	2	8	179	655	831	7.12e-44	155

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Find 44 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTGAAGTTGGTATTGCAG+CGG	0.637858	7_3:-77059080	None:intergenic
AAGTTCATTGATTCCTTGTT+TGG	0.378026	7_3:-77058803	None:intergenic
AATCTACAATTATCAACCTC+AGG	0.501517	7_3:-77059224	None:intergenic
ACACTTCGATATCTCCTAGG+CGG	0.735994	7_3:-77058768	None:intergenic
ACAGACTGCAATTTACCTGA+GGG	0.667003	7_3:+77059799	Msa1125590:CDS
ACATGTTACTACAGTGCCTA+AGG	0.489927	7_3:+77059281	Msa1125590:CDS
AGGGATTGCCTTCCTCCACG+AGG	0.731332	7_3:+77059140	Msa1125590:CDS
AGGTTGATAATTGTAGATTT+CGG	0.394895	7_3:+77059228	Msa1125590:CDS
ATAAACCTCCTCGTGGAGGA+AGG	0.565943	7_3:-77059148	None:intergenic
ATGTCTCGGTGAATGATGTG+GGG	0.729307	7_3:-77059171	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTACTTACGTAGGAATATCT+TGG	-	chr7_3:77058950-77058969	None:intergenic	30.0%
AATCTACAATTATCAACCTC+AGG	-	chr7_3:77059227-77059246	None:intergenic	30.0%
ACTGTATTATGGTCTAATGT+TGG	-	chr7_3:77059371-77059390	None:intergenic	30.0%
GGTTTCTTTCTACTGTATTA+TGG	-	chr7_3:77059382-77059401	None:intergenic	30.0%
CGTAGTGTAATAGTATTTAG+GGG	-	chr7_3:77059403-77059422	None:intergenic	30.0%
CCGTAGTGTAATAGTATTTA+GGG	-	chr7_3:77059404-77059423	None:intergenic	30.0%
CCCTAAATACTATTACACTA+CGG	+	chr7_3:77059401-77059420	Msa1125590:intron	30.0%
CCTAAATACTATTACACTAC+GGG	+	chr7_3:77059402-77059421	Msa1125590:intron	30.0%
AAAAAACTGCAATTTATCGG+TGG	+	chr7_3:77059609-77059628	Msa1125590:intron	30.0%
TTACTTACGTAGGAATATCT+TGG	-	chr7_3:77058950-77058969	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	77058760	77059828	77058760	ID=Msa1125590;Name=Msa1125590
chr7_3	mRNA	77058760	77059828	77058760	ID=Msa1125590-mRNA-1;Parent=Msa1125590;Name=Msa1125590-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0\|0\|0\|1\|1\|0.66\|3\|0\|186
chr7_3	exon	77058760	77058965	77058760	ID=Msa1125590-mRNA-1:exon:21150;Parent=Msa1125590-mRNA-1
chr7_3	exon	77059080	77059310	77059080	ID=Msa1125590-mRNA-1:exon:21151;Parent=Msa1125590-mRNA-1
chr7_3	exon	77059705	77059828	77059705	ID=Msa1125590-mRNA-1:exon:21152;Parent=Msa1125590-mRNA-1
chr7_3	CDS	77058760	77058965	77058760	ID=Msa1125590-mRNA-1:cds;Parent=Msa1125590-mRNA-1
chr7_3	CDS	77059080	77059310	77059080	ID=Msa1125590-mRNA-1:cds;Parent=Msa1125590-mRNA-1
chr7_3	CDS	77059705	77059828	77059705	ID=Msa1125590-mRNA-1:cds;Parent=Msa1125590-mRNA-1

Gene Sequence

>Msa1125590

GAAATATGCCGCCTAGGAGATATCGAAGTGTTAGATGCTTCATCCAAACAAGGAATCAATGAACTTCTCACTGAAATTCAAGTCATTTCCAGCATCAAGCGTCAAAACTTGGTGGAATTATATGGATGTTGCTTTGAACATGATCATAGAATTTTGGTTTATCGTTATGTCGAGAAAAATAGCCTAGCCAAGATATTCCTACGTAACCGCTGCAATACCAACTTCAGTTGGTATGTCAGGCGCATAATTTGCGACGACATTGCCCAAGGGATTGCCTTCCTCCACGAGGAGGTTTATCCCCACATCATTCACCGAGACATCAAAGCTGATAACATTTTGTTTGATGTAGACCTGAGGTTGATAATTGTAGATTTCGGTTTTGCAAAGTTGGTAGATCCCGACCATTCACATGTTACTACAGTGCCTAAGGGAACCTTGGGTTACGCAACACCAGAAGTGGTGTCACAATGTAGAGTAACAAGAAAGTCAAACATCTTCAGTTTTGATGAGATTGTGAGCGAGAGGCCAAACACAGACTGCAATTTACCTGAGGGAGAATAG

Protein sequence

>Msa1125590

EICRLGDIEVLDASSKQGINELLTEIQVISSIKRQNLVELYGCCFEHDHRILVYRYVEKNSLAKIFLRNRCNTNFSWYVRRIICDDIAQGIAFLHEEVYPHIIHRDIKADNILFDVDLRLIIVDFGFAKLVDPDHSHVTTVPKGTLGYATPEVVSQCRVTRKSNIFSFDEIVSERPNTDCNLPEGE*