Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128360 | XP_024627018.1 | 96.585 | 205 | 7 | 0 | 178 | 382 | 86 | 290 | 4.26e-143 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128360 | sp|P51139|MSK3_MEDSA | 62.609 | 345 | 95 | 6 | 2 | 319 | 1 | 338 | 9.85e-131 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128360 | G7KTQ4 | 96.585 | 205 | 7 | 0 | 178 | 382 | 168 | 372 | 4.16e-142 | 418 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128360 | MtrunA17_Chr7g0270351 | 96.585 | 205 | 7 | 0 | 178 | 382 | 168 | 372 | 8.00e-146 | 418 |
| Msa1128360 | MtrunA17_Chr6g0448811 | 96.098 | 205 | 8 | 0 | 178 | 382 | 168 | 372 | 9.13e-145 | 415 |
| Msa1128360 | MtrunA17_Chr7g0270371 | 75.969 | 258 | 48 | 2 | 1 | 244 | 1 | 258 | 4.90e-132 | 384 |
| Msa1128360 | MtrunA17_Chr1g0193081 | 67.181 | 259 | 68 | 5 | 2 | 244 | 1 | 258 | 8.33e-111 | 330 |
| Msa1128360 | MtrunA17_Chr1g0194201 | 65.251 | 259 | 74 | 4 | 1 | 244 | 1 | 258 | 1.70e-110 | 329 |
| Msa1128360 | MtrunA17_Chr8g0350311 | 45.087 | 346 | 158 | 7 | 3 | 319 | 61 | 403 | 4.45e-82 | 258 |
| Msa1128360 | MtrunA17_Chr7g0246591 | 51.128 | 266 | 102 | 5 | 6 | 244 | 60 | 324 | 2.67e-81 | 256 |
| Msa1128360 | MtrunA17_Chr2g0320011 | 58.824 | 221 | 76 | 4 | 38 | 244 | 52 | 271 | 1.33e-80 | 253 |
| Msa1128360 | MtrunA17_Chr2g0284091 | 56.696 | 224 | 82 | 4 | 35 | 244 | 1 | 223 | 3.12e-79 | 248 |
| Msa1128360 | MtrunA17_Chr2g0277011 | 54.930 | 213 | 82 | 2 | 46 | 244 | 61 | 273 | 2.11e-73 | 234 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128360 | AT3G20650.1 | 78.607 | 201 | 43 | 0 | 178 | 378 | 168 | 368 | 3.65e-113 | 335 |
| Msa1128360 | AT5G26751.1 | 68.093 | 257 | 63 | 4 | 2 | 244 | 1 | 252 | 6.09e-113 | 335 |
| Msa1128360 | AT3G20650.2 | 78.109 | 201 | 43 | 1 | 178 | 378 | 168 | 367 | 7.60e-111 | 329 |
| Msa1128360 | AT3G05840.2 | 63.424 | 257 | 79 | 3 | 2 | 244 | 1 | 256 | 7.82e-107 | 320 |
| Msa1128360 | AT3G05840.1 | 63.424 | 257 | 79 | 3 | 2 | 244 | 1 | 256 | 7.82e-107 | 320 |
| Msa1128360 | AT5G14640.1 | 64.341 | 258 | 76 | 4 | 2 | 244 | 1 | 257 | 2.34e-106 | 319 |
| Msa1128360 | AT5G14640.2 | 64.341 | 258 | 76 | 4 | 2 | 244 | 1 | 257 | 2.34e-106 | 319 |
| Msa1128360 | AT3G20650.3 | 84.393 | 173 | 27 | 0 | 178 | 350 | 168 | 340 | 9.94e-103 | 308 |
| Msa1128360 | AT4G00720.1 | 55.785 | 242 | 85 | 4 | 24 | 244 | 81 | 321 | 1.55e-81 | 257 |
| Msa1128360 | AT1G06390.2 | 56.889 | 225 | 82 | 3 | 34 | 244 | 30 | 253 | 9.86e-81 | 253 |
| Msa1128360 | AT1G06390.1 | 56.889 | 225 | 82 | 3 | 34 | 244 | 30 | 253 | 9.86e-81 | 253 |
| Msa1128360 | AT4G18710.1 | 59.459 | 222 | 75 | 4 | 37 | 244 | 3 | 223 | 1.51e-80 | 252 |
| Msa1128360 | AT2G30980.1 | 58.482 | 224 | 78 | 4 | 35 | 244 | 33 | 255 | 2.55e-80 | 252 |
| Msa1128360 | AT4G18710.2 | 58.605 | 215 | 75 | 3 | 44 | 244 | 3 | 217 | 4.30e-79 | 244 |
| Msa1128360 | AT3G61160.6 | 51.639 | 244 | 103 | 3 | 15 | 244 | 50 | 292 | 2.61e-73 | 233 |
| Msa1128360 | AT1G57870.1 | 50.806 | 248 | 102 | 4 | 16 | 244 | 19 | 265 | 5.02e-73 | 234 |
| Msa1128360 | AT1G57870.4 | 50.806 | 248 | 102 | 4 | 16 | 244 | 19 | 265 | 5.02e-73 | 234 |
| Msa1128360 | AT1G57870.2 | 50.806 | 248 | 102 | 4 | 16 | 244 | 19 | 265 | 5.02e-73 | 234 |
| Msa1128360 | AT1G57870.3 | 50.806 | 248 | 102 | 4 | 16 | 244 | 19 | 265 | 8.06e-73 | 234 |
| Msa1128360 | AT3G61160.2 | 51.639 | 244 | 103 | 3 | 15 | 244 | 50 | 292 | 1.68e-72 | 233 |
| Msa1128360 | AT1G09840.3 | 47.368 | 266 | 118 | 4 | 1 | 244 | 1 | 266 | 3.29e-71 | 229 |
| Msa1128360 | AT1G09840.7 | 47.368 | 266 | 118 | 4 | 1 | 244 | 1 | 266 | 3.29e-71 | 229 |
| Msa1128360 | AT1G09840.10 | 47.368 | 266 | 118 | 4 | 1 | 244 | 1 | 266 | 3.29e-71 | 229 |
| Msa1128360 | AT1G09840.6 | 47.368 | 266 | 118 | 4 | 1 | 244 | 1 | 266 | 3.29e-71 | 229 |
| Msa1128360 | AT1G09840.4 | 47.368 | 266 | 118 | 4 | 1 | 244 | 1 | 266 | 3.29e-71 | 229 |
| Msa1128360 | AT1G09840.1 | 47.368 | 266 | 118 | 4 | 1 | 244 | 1 | 266 | 3.29e-71 | 229 |
| Msa1128360 | AT1G09840.9 | 47.368 | 266 | 118 | 4 | 1 | 244 | 1 | 266 | 3.29e-71 | 229 |
| Msa1128360 | AT1G09840.5 | 47.368 | 266 | 118 | 4 | 1 | 244 | 1 | 266 | 3.29e-71 | 229 |
| Msa1128360 | AT1G09840.8 | 47.368 | 266 | 118 | 4 | 1 | 244 | 1 | 266 | 3.29e-71 | 229 |
| Msa1128360 | AT1G09840.2 | 47.368 | 266 | 118 | 4 | 1 | 244 | 1 | 266 | 3.29e-71 | 229 |
| Msa1128360 | AT3G61160.3 | 51.230 | 244 | 97 | 4 | 15 | 244 | 50 | 285 | 3.17e-69 | 222 |
| Msa1128360 | AT3G61160.5 | 51.230 | 244 | 97 | 4 | 15 | 244 | 50 | 285 | 4.74e-69 | 222 |
| Msa1128360 | AT3G61160.4 | 51.230 | 244 | 97 | 4 | 15 | 244 | 50 | 285 | 1.58e-68 | 222 |
| Msa1128360 | AT3G61160.1 | 51.230 | 244 | 97 | 4 | 15 | 244 | 50 | 285 | 1.64e-68 | 222 |
| Msa1128360 | AT1G09840.11 | 42.446 | 139 | 66 | 2 | 120 | 244 | 1 | 139 | 2.53e-26 | 107 |
Find 133 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTAAGAAAACCAAGTATT+TGG | 0.195927 | 7_3:-80250684 | None:intergenic |
| GGTGGTGTTGCACCTGCTTC+TGG | 0.196423 | 7_3:+80246861 | Msa1128360:CDS |
| AGATGAATGACATGAAAATT+AGG | 0.223304 | 7_3:+80246934 | Msa1128360:CDS |
| AACACCTTCTCTAAGCTTCT+TGG | 0.241869 | 7_3:-80248160 | None:intergenic |
| AATCCGTGGGATTCGGAATT+AGG | 0.274878 | 7_3:-80246324 | None:intergenic |
| TAATCGAAAGAAGGAAATTA+AGG | 0.280135 | 7_3:+80246189 | Msa1128360:five_prime_UTR |
| ATTGCAAACTATGCGCCTTC+TGG | 0.292219 | 7_3:+80247536 | Msa1128360:CDS |
| TTTGAGTTGAAGAGTTGATT+TGG | 0.306432 | 7_3:+80246743 | Msa1128360:five_prime_UTR |
| ATGCGAAGACTTGGTGCGTT+GGG | 0.316748 | 7_3:+80250147 | Msa1128360:CDS |
| GATGGAAATGGGACCGAAAC+TGG | 0.324210 | 7_3:+80247131 | Msa1128360:CDS |
| TTGAGTTGAAGAGTTGATTT+GGG | 0.338182 | 7_3:+80246744 | Msa1128360:five_prime_UTR |
| GGCGCATAGTTTGCAATTCC+CGG | 0.339075 | 7_3:-80247530 | None:intergenic |
| GACAATTATATGTCCAGTTT+CGG | 0.344576 | 7_3:-80247144 | None:intergenic |
| ATTTAGCACATCAAGTTCTA+TGG | 0.350217 | 7_3:-80250837 | None:intergenic |
| TTTAAATCATCCTGCCCCTT+TGG | 0.356397 | 7_3:+80248483 | Msa1128360:CDS |
| TGGAGGTTGAATGGTCAAAA+AGG | 0.362970 | 7_3:+80246151 | Msa1128360:five_prime_UTR |
| GATGAATGACATGAAAATTA+GGG | 0.374285 | 7_3:+80246935 | Msa1128360:CDS |
| AAGATAAGAGGTACAAGAAC+CGG | 0.374643 | 7_3:+80247511 | Msa1128360:CDS |
| AAATGGTTATACCTTGATCT+TGG | 0.389460 | 7_3:-80250179 | None:intergenic |
| ATGTATGTATGTATGGTATA+TGG | 0.390593 | 7_3:+80246086 | Msa1128360:five_prime_UTR |
| TTGGTAATCACATTGGCATC+TGG | 0.392108 | 7_3:-80248141 | None:intergenic |
| AGAGGAGTAGTGAGTAGGAT+AGG | 0.399075 | 7_3:+80246111 | Msa1128360:five_prime_UTR |
| AAACGCGCACACACCTGCTT+TGG | 0.400436 | 7_3:-80247194 | None:intergenic |
| TGGTCCTGGCTCATACAAAT+TGG | 0.400837 | 7_3:-80250734 | None:intergenic |
| GATCTAGCTATGACTTTGAA+TGG | 0.402614 | 7_3:-80246353 | None:intergenic |
| GTTGTTGGACATGGATCTTT+TGG | 0.405174 | 7_3:+80247320 | Msa1128360:CDS |
| AAGAAGAAAGAAGAGACAAA+TGG | 0.408855 | 7_3:-80246300 | None:intergenic |
| TGCTTCAAAGATACAACATT+AGG | 0.410683 | 7_3:-80247564 | None:intergenic |
| GCTACCATTGTAGATGGAAA+TGG | 0.412175 | 7_3:+80247119 | Msa1128360:CDS |
| TAAGAAGATATGATGGCATC+AGG | 0.417927 | 7_3:+80246840 | Msa1128360:exon |
| GCAGCTGAAGGGTTGACCTT+TGG | 0.421180 | 7_3:+80248328 | Msa1128360:intron |
| CTCATACAAATTGGCAATGC+AGG | 0.422252 | 7_3:-80250725 | None:intergenic |
| AATTAAGTACACGTTCCATT+TGG | 0.422700 | 7_3:+80248506 | Msa1128360:CDS |
| TTCATGTCATTCATCTCCTC+AGG | 0.428163 | 7_3:-80246927 | None:intergenic |
| GGAGAAGAGTGGAGGTTGAA+TGG | 0.433690 | 7_3:+80246142 | Msa1128360:five_prime_UTR |
| GTAATAGTGTCTACTCGGTT+TGG | 0.442269 | 7_3:+80248350 | Msa1128360:CDS |
| CATGAAAATTAGGGATGATA+AGG | 0.443978 | 7_3:+80246944 | Msa1128360:CDS |
| TACATGGCCGAGCGTGTTGT+TGG | 0.444049 | 7_3:+80247305 | Msa1128360:CDS |
| GGACACTATCGGCTGATGAA+TGG | 0.445211 | 7_3:+80250415 | Msa1128360:CDS |
| GACACTATCGGCTGATGAAT+GGG | 0.449468 | 7_3:+80250416 | Msa1128360:CDS |
| TATGAAACGAAGCGAATTTG+TGG | 0.451572 | 7_3:+80250119 | Msa1128360:CDS |
| GAAGTGAAATCCGTGGGATT+CGG | 0.454700 | 7_3:-80246331 | None:intergenic |
| GCGCACACACCTGCTTTGGC+TGG | 0.456289 | 7_3:-80247190 | None:intergenic |
| TGAGTAGGATAGGGAGCATA+GGG | 0.456818 | 7_3:+80246121 | Msa1128360:five_prime_UTR |
| GAAGCCGCTACCATTGTAGA+TGG | 0.458378 | 7_3:+80247113 | Msa1128360:CDS |
| TATGTCATTTGTATTGAGAA+AGG | 0.459265 | 7_3:+80250455 | Msa1128360:CDS |
| ATCACACGGCTGACAGTCTC+AGG | 0.459309 | 7_3:-80247648 | None:intergenic |
| AGAAGGTTCTTCAAGATAAG+AGG | 0.462386 | 7_3:+80247499 | Msa1128360:CDS |
| GTTCCGATGAAAACGCCTCC+TGG | 0.462802 | 7_3:-80248114 | None:intergenic |
| TAAAGTTTGACATATATCAT+AGG | 0.464239 | 7_3:-80247702 | None:intergenic |
| TGAAAGGGGACAATCCATTC+AGG | 0.468444 | 7_3:-80249918 | None:intergenic |
| CTTTGGTAATAGTGTCTACT+CGG | 0.473784 | 7_3:+80248345 | Msa1128360:CDS |
| TCGAGGGTTGATGCATATTA+CGG | 0.477216 | 7_3:+80250613 | Msa1128360:CDS |
| GAAGAGATTTAATCGAAAGA+AGG | 0.478028 | 7_3:+80246180 | Msa1128360:five_prime_UTR |
| CATGCGAAGACTTGGTGCGT+TGG | 0.480008 | 7_3:+80250146 | Msa1128360:CDS |
| CTTCTTCTCAACGACTGAAA+AGG | 0.482229 | 7_3:+80247590 | Msa1128360:CDS |
| AATGACTTGAATACGTGAAA+GGG | 0.483879 | 7_3:-80249933 | None:intergenic |
| GTGAGTAGGATAGGGAGCAT+AGG | 0.484156 | 7_3:+80246120 | Msa1128360:five_prime_UTR |
| AGTTTGCATTGCATTACTCC+TGG | 0.484761 | 7_3:+80248037 | Msa1128360:intron |
| GAGGAAGACATAACGTATAT+CGG | 0.489287 | 7_3:+80250635 | Msa1128360:CDS |
| GCTTCAAAGATACAACATTA+GGG | 0.489388 | 7_3:-80247563 | None:intergenic |
| GCTGTGATAGGCAAAGTGTT+TGG | 0.495638 | 7_3:+80247452 | Msa1128360:intron |
| CATATAATTGTCACAACCAT+TGG | 0.495812 | 7_3:+80247155 | Msa1128360:CDS |
| AAAGAAACCATACCTCCAAA+TGG | 0.497899 | 7_3:-80248521 | None:intergenic |
| TAGGCAAAGTGTTTGGAGAC+TGG | 0.500401 | 7_3:+80247459 | Msa1128360:intron |
| CTACCATTGTAGATGGAAAT+GGG | 0.502762 | 7_3:+80247120 | Msa1128360:CDS |
| AACGTGTACTTAATTCCAAA+GGG | 0.507617 | 7_3:-80248498 | None:intergenic |
| TGGAGAGAGGAGTAGTGAGT+AGG | 0.510025 | 7_3:+80246106 | Msa1128360:five_prime_UTR |
| GAGGAGTAGTGAGTAGGATA+GGG | 0.511085 | 7_3:+80246112 | Msa1128360:five_prime_UTR |
| AGGAATGGAATGGAATGGAT+TGG | 0.513455 | 7_3:-80246375 | None:intergenic |
| TATCAAATTAGACATTCCCT+TGG | 0.519314 | 7_3:-80250892 | None:intergenic |
| TAAGTACACGTTCCATTTGG+AGG | 0.523114 | 7_3:+80248509 | Msa1128360:CDS |
| TGCGAAGACTTGGTGCGTTG+GGG | 0.524313 | 7_3:+80250148 | Msa1128360:CDS |
| GTGTCAGCTTTACTTCGTCC+AGG | 0.525304 | 7_3:+80248096 | Msa1128360:CDS |
| AGGGAGCATAGGGAGAAGAG+TGG | 0.526872 | 7_3:+80246131 | Msa1128360:five_prime_UTR |
| ACGCTGTTGATTGTCCTGAA+TGG | 0.528292 | 7_3:+80249904 | Msa1128360:CDS |
| GATAAGAATGCAAGTTCAGT+TGG | 0.530682 | 7_3:+80246891 | Msa1128360:CDS |
| TGTCAAACTTTATTCTTACC+AGG | 0.533202 | 7_3:+80247713 | Msa1128360:CDS |
| GTAATGTATGTATGTATGTA+TGG | 0.533424 | 7_3:+80246079 | Msa1128360:five_prime_UTR |
| ATTGCCAATTTGTATGAGCC+AGG | 0.533572 | 7_3:+80250730 | Msa1128360:three_prime_UTR |
| ATTCAAGTCATTAGCTGAAG+AGG | 0.535967 | 7_3:+80249944 | Msa1128360:CDS |
| GCCGAGCGTGTTGTTGGACA+TGG | 0.548342 | 7_3:+80247311 | Msa1128360:CDS |
| AGCACGTGCCTCTGTAGACC+AGG | 0.549830 | 7_3:-80248055 | None:intergenic |
| AGAAACTGTGGCTATAAAGA+AGG | 0.550910 | 7_3:+80247482 | Msa1128360:CDS |
| GGGGATGGCAACCAAGATCA+AGG | 0.551349 | 7_3:+80250168 | Msa1128360:CDS |
| GTACTTAATTCCAAAGGGGC+AGG | 0.552286 | 7_3:-80248493 | None:intergenic |
| CAACATTAGGGTGGTCCAGA+AGG | 0.552572 | 7_3:-80247551 | None:intergenic |
| TTATCTATAAATCCAGAAGC+AGG | 0.555410 | 7_3:-80246873 | None:intergenic |
| AGAAGAGACTTACAGAGGAA+TGG | 0.557522 | 7_3:-80246390 | None:intergenic |
| GTGGACCTCATGCGAAGACT+TGG | 0.557650 | 7_3:+80250138 | Msa1128360:CDS |
| TTTCCTAATTCCGAATCCCA+CGG | 0.558935 | 7_3:+80246321 | Msa1128360:five_prime_UTR |
| CGCTTCGTTTCATATACTCG+TGG | 0.561057 | 7_3:-80250110 | None:intergenic |
| CAGGAACATATTCAAGCACC+AGG | 0.561739 | 7_3:-80247629 | None:intergenic |
| AAGCTTCTTGGTAATCACAT+TGG | 0.563110 | 7_3:-80248148 | None:intergenic |
| CAACAAGATGGTGAGATGAA+TGG | 0.565060 | 7_3:-80250754 | None:intergenic |
| TAATGACTTGAATACGTGAA+AGG | 0.566821 | 7_3:-80249934 | None:intergenic |
| ATTTCCATCTACAATGGTAG+CGG | 0.569835 | 7_3:-80247117 | None:intergenic |
| ATAATTGTCACAACCATTGG+TGG | 0.569969 | 7_3:+80247158 | Msa1128360:CDS |
| TACAGAGGAATGGAATGGAA+TGG | 0.574554 | 7_3:-80246380 | None:intergenic |
| GCAAACACAAACTAATGCCA+AGG | 0.583431 | 7_3:+80250875 | Msa1128360:three_prime_UTR |
| GGACGAGCTTTATCTTAACC+TGG | 0.583507 | 7_3:+80247611 | Msa1128360:CDS |
| AGACTTACAGAGGAATGGAA+TGG | 0.583776 | 7_3:-80246385 | None:intergenic |
| GAGCATAGGGAGAAGAGTGG+AGG | 0.586507 | 7_3:+80246134 | Msa1128360:five_prime_UTR |
| TGTTGTAGTGTCTAATCACA+CGG | 0.586876 | 7_3:-80247662 | None:intergenic |
| GAACGTGTACTTAATTCCAA+AGG | 0.596850 | 7_3:-80248499 | None:intergenic |
| TATGTATGGTATATGGAGAG+AGG | 0.598849 | 7_3:+80246093 | Msa1128360:five_prime_UTR |
| TCCATGTCCAACAACACGCT+CGG | 0.601918 | 7_3:-80247312 | None:intergenic |
| TGAGTTGAAGAGTTGATTTG+GGG | 0.602619 | 7_3:+80246745 | Msa1128360:five_prime_UTR |
| GATGGTGAGATGAATGGTCC+TGG | 0.607499 | 7_3:-80250748 | None:intergenic |
| AGATAAGAGGTACAAGAACC+GGG | 0.608781 | 7_3:+80247512 | Msa1128360:CDS |
| GGTCTACAGAGGCACGTGCT+CGG | 0.612151 | 7_3:+80248058 | Msa1128360:CDS |
| GGTCCCATTTCCATCTACAA+TGG | 0.617998 | 7_3:-80247123 | None:intergenic |
| TGAATGGAAGTGAAATCCGT+GGG | 0.630295 | 7_3:-80246337 | None:intergenic |
| ACGCACCAAGTCTTCGCATG+AGG | 0.633716 | 7_3:-80250143 | None:intergenic |
| CGAGTAGACACTATTACCAA+AGG | 0.638473 | 7_3:-80248344 | None:intergenic |
| ATGACTTGAATACGTGAAAG+GGG | 0.642390 | 7_3:-80249932 | None:intergenic |
| GCGAAGACTTGGTGCGTTGG+GGG | 0.643362 | 7_3:+80250149 | Msa1128360:CDS |
| GAAGCTGTGTATGATCTGAA+AGG | 0.644408 | 7_3:+80246785 | Msa1128360:five_prime_UTR |
| ATTACCAAGAAGCTTAGAGA+AGG | 0.645841 | 7_3:+80248156 | Msa1128360:CDS |
| GAGTTGAAGAGTTGATTTGG+GGG | 0.646648 | 7_3:+80246746 | Msa1128360:five_prime_UTR |
| TTGAATGGAAGTGAAATCCG+TGG | 0.657645 | 7_3:-80246338 | None:intergenic |
| GAAGATATGATGGCATCAGG+TGG | 0.669232 | 7_3:+80246843 | Msa1128360:exon |
| CAAACACAAACTAATGCCAA+GGG | 0.669831 | 7_3:+80250876 | Msa1128360:three_prime_UTR |
| GTGAGTGGCAGAAAAGATCG+AGG | 0.673134 | 7_3:+80250596 | Msa1128360:CDS |
| TGAGTGGCAGAAAAGATCGA+GGG | 0.675804 | 7_3:+80250597 | Msa1128360:CDS |
| TCAGCTTTACTTCGTCCAGG+AGG | 0.689231 | 7_3:+80248099 | Msa1128360:CDS |
| GATGTGAATATGCAGCTGAA+GGG | 0.689715 | 7_3:+80248317 | Msa1128360:intron |
| GCATTACTCCTGGTCTACAG+AGG | 0.699463 | 7_3:+80248047 | Msa1128360:CDS |
| TGGTGTTGAAAAGTTGCCTG+AGG | 0.707504 | 7_3:+80246911 | Msa1128360:CDS |
| TTTGGAGACTGGAGAAACTG+TGG | 0.715237 | 7_3:+80247470 | Msa1128360:CDS |
| TCAAAGATACAACATTAGGG+TGG | 0.716380 | 7_3:-80247560 | None:intergenic |
| AGGGTTGATGCATATTACGG+AGG | 0.716621 | 7_3:+80250616 | Msa1128360:CDS |
| ACGTGTACTTAATTCCAAAG+GGG | 0.740982 | 7_3:-80248497 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATATAAAAAATAGCT+AGG | - | chr7_3:80249029-80249048 | None:intergenic | 10.0% |
| !!! | ATTTTGAAGTTTATTTTTTA+CGG | - | chr7_3:80249109-80249128 | None:intergenic | 10.0% |
| !!! | TTTATTTTAGAAACTAATTT+TGG | - | chr7_3:80249253-80249272 | None:intergenic | 10.0% |
| !! | TTTATATAGTAAAAAAATAG+GGG | - | chr7_3:80249363-80249382 | None:intergenic | 10.0% |
| !! | GATTTATATAGTAAAAAAAT+AGG | - | chr7_3:80249365-80249384 | None:intergenic | 10.0% |
| !!! | ATGATATTGATTTATTTTTT+TGG | - | chr7_3:80249611-80249630 | None:intergenic | 10.0% |
| !!! | TCAATATCATTAATTTATTT+TGG | + | chr7_3:80249621-80249640 | Msa1128360:intron | 10.0% |
| !!! | CAATATCATTAATTTATTTT+GGG | + | chr7_3:80249622-80249641 | Msa1128360:intron | 10.0% |
| !! | TATAAATTATTGACATATAA+CGG | - | chr7_3:80250369-80250388 | None:intergenic | 10.0% |
| !! | AAATTCAAAGATATTAAACA+GGG | - | chr7_3:80247377-80247396 | None:intergenic | 15.0% |
| !! | NNNNNNNNNTTCACAATATC+TGG | - | chr7_3:80247807-80247826 | None:intergenic | 15.0% |
| !!! | GTTGATTTGTAAAATAAAAT+AGG | + | chr7_3:80248900-80248919 | Msa1128360:intron | 15.0% |
| !!! | TTATGAATTTTTTATTTGCT+GGG | - | chr7_3:80249078-80249097 | None:intergenic | 15.0% |
| !! | TTATATAGTAAAAAAATAGG+GGG | - | chr7_3:80249362-80249381 | None:intergenic | 15.0% |
| !! | TCATAAATCAAAATAGAATT+TGG | - | chr7_3:80249462-80249481 | None:intergenic | 15.0% |
| !! | TGATGTTTAATAAAGTTTAA+TGG | - | chr7_3:80250226-80250245 | None:intergenic | 15.0% |
| !! | GTTATATGTCAATAATTTAT+AGG | + | chr7_3:80250368-80250387 | Msa1128360:intron | 15.0% |
| !!! | AAAATTTTGTTGAATTTTGT+AGG | + | chr7_3:80250783-80250802 | Msa1128360:three_prime_UTR | 15.0% |
| !! | AAAGAGGAAAAAATCAAAAA+AGG | - | chr7_3:80246421-80246440 | None:intergenic | 20.0% |
| !!! | AATAATTTGTCTATAACTTG+TGG | + | chr7_3:80246473-80246492 | Msa1128360:intron | 20.0% |
| !! | AATCAAAAATCATTGCTTTA+AGG | - | chr7_3:80246576-80246595 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTGTTTCTTACT+AGG | + | chr7_3:80246643-80246662 | Msa1128360:intron | 20.0% |
| !!! | TTTTCTTTTGTTTCTTACTA+GGG | + | chr7_3:80246644-80246663 | Msa1128360:intron | 20.0% |
| !!! | TTTAATTTTTTTGTTGTTGC+AGG | + | chr7_3:80246720-80246739 | Msa1128360:intron | 20.0% |
| !!! | CTTTTTTTAAGAAGATATGA+TGG | + | chr7_3:80246833-80246852 | Msa1128360:exon | 20.0% |
| !! | ATAGAATCTATGAACTTATA+TGG | + | chr7_3:80247249-80247268 | Msa1128360:intron | 20.0% |
| !!! | ATTTTAGACAATAAGTTACA+TGG | + | chr7_3:80247289-80247308 | Msa1128360:intron | 20.0% |
| !! | CAAATTCAAAGATATTAAAC+AGG | - | chr7_3:80247378-80247397 | None:intergenic | 20.0% |
| !! | TAATATCTTTGAATTTGAGT+AGG | + | chr7_3:80247381-80247400 | Msa1128360:intron | 20.0% |
| !! | TAAAGTTTGACATATATCAT+AGG | - | chr7_3:80247705-80247724 | None:intergenic | 20.0% |
| !! | GATTTGTAAAATAAAATAGG+TGG | + | chr7_3:80248903-80248922 | Msa1128360:intron | 20.0% |
| !! | GTTATGAAATGAAAATGTAA+AGG | - | chr7_3:80249056-80249075 | None:intergenic | 20.0% |
| !!! | GTTATGAATTTTTTATTTGC+TGG | - | chr7_3:80249079-80249098 | None:intergenic | 20.0% |
| !! | TATATAGTAAAAAAATAGGG+GGG | - | chr7_3:80249361-80249380 | None:intergenic | 20.0% |
| !! | TCGATTATATATACTTACTA+AGG | - | chr7_3:80249682-80249701 | None:intergenic | 20.0% |
| !!! | GGCATAAGTTTTAAAAATAA+GGG | - | chr7_3:80249854-80249873 | None:intergenic | 20.0% |
| !!! | ATTTTAGTTTTAGAAGTTGA+AGG | - | chr7_3:80250014-80250033 | None:intergenic | 20.0% |
| ! | GTAATGTATGTATGTATGTA+TGG | + | chr7_3:80246079-80246098 | Msa1128360:five_prime_UTR | 25.0% |
| ! | ATGTATGTATGTATGGTATA+TGG | + | chr7_3:80246086-80246105 | Msa1128360:five_prime_UTR | 25.0% |
| ! | TAATCGAAAGAAGGAAATTA+AGG | + | chr7_3:80246189-80246208 | Msa1128360:five_prime_UTR | 25.0% |
| !!! | TTGAAAATGTGAGTTTTGAT+TGG | - | chr7_3:80246273-80246292 | None:intergenic | 25.0% |
| ! | GGAAAAAATCAAAAAAGGAA+TGG | - | chr7_3:80246416-80246435 | None:intergenic | 25.0% |
| ! | AGATGAATGACATGAAAATT+AGG | + | chr7_3:80246934-80246953 | Msa1128360:CDS | 25.0% |
| ! | GATGAATGACATGAAAATTA+GGG | + | chr7_3:80246935-80246954 | Msa1128360:CDS | 25.0% |
| !! | TTGTTCTTGAATAAGCATTT+TGG | + | chr7_3:80247028-80247047 | Msa1128360:intron | 25.0% |
| ! | AATCACAATGTAACTAAATG+AGG | - | chr7_3:80248275-80248294 | None:intergenic | 25.0% |
| ! | CCAATCAGTTATGTATTATA+GGG | - | chr7_3:80248586-80248605 | None:intergenic | 25.0% |
| ! | CCTATAATACATAACTGATT+GGG | + | chr7_3:80248584-80248603 | Msa1128360:intron | 25.0% |
| ! | TTAATACGTAAGAATTCTTG+TGG | - | chr7_3:80248643-80248662 | None:intergenic | 25.0% |
| !! | TCTTTTGCTCATTTTAAACT+AGG | + | chr7_3:80248836-80248855 | Msa1128360:intron | 25.0% |
| !! | GTCAAACTTAAACTTTTAGT+TGG | - | chr7_3:80248959-80248978 | None:intergenic | 25.0% |
| ! | ATATAGTAAAAAAATAGGGG+GGG | - | chr7_3:80249360-80249379 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTGTCTTGGATTA+AGG | + | chr7_3:80249648-80249667 | Msa1128360:intron | 25.0% |
| !!! | GGGCATAAGTTTTAAAAATA+AGG | - | chr7_3:80249855-80249874 | None:intergenic | 25.0% |
| ! | AAAAGGTAATGTCTTAAATG+GGG | - | chr7_3:80249876-80249895 | None:intergenic | 25.0% |
| ! | CAAAAGGTAATGTCTTAAAT+GGG | - | chr7_3:80249877-80249896 | None:intergenic | 25.0% |
| ! | ACAAAAGGTAATGTCTTAAA+TGG | - | chr7_3:80249878-80249897 | None:intergenic | 25.0% |
| !! | AAGAGACATATTTCTTTTTC+AGG | + | chr7_3:80250393-80250412 | Msa1128360:intron | 25.0% |
| !!! | AGAGACATATTTCTTTTTCA+GGG | + | chr7_3:80250394-80250413 | Msa1128360:intron | 25.0% |
| !! | TATGTCATTTGTATTGAGAA+AGG | + | chr7_3:80250455-80250474 | Msa1128360:CDS | 25.0% |
| ! | TTTAACAATTGTCAACTTGT+TGG | + | chr7_3:80250520-80250539 | Msa1128360:intron | 25.0% |
| ! | GCTAAAAAAAACCAAATACT+TGG | + | chr7_3:80250673-80250692 | Msa1128360:three_prime_UTR | 25.0% |
| !! | TTCTAAGAAAACCAAGTATT+TGG | - | chr7_3:80250687-80250706 | None:intergenic | 25.0% |
| !!! | AAATACTTGGTTTTCTTAGA+AGG | + | chr7_3:80250686-80250705 | Msa1128360:three_prime_UTR | 25.0% |
| GAAGAGATTTAATCGAAAGA+AGG | + | chr7_3:80246180-80246199 | Msa1128360:five_prime_UTR | 30.0% | |
| AAGAAGAAAGAAGAGACAAA+TGG | - | chr7_3:80246303-80246322 | None:intergenic | 30.0% | |
| ATCTCAGAGAAAAATCAAGT+GGG | - | chr7_3:80246508-80246527 | None:intergenic | 30.0% | |
| !! | CTTGAGTTGAAGAAATTTGA+TGG | + | chr7_3:80246673-80246692 | Msa1128360:intron | 30.0% |
| !! | TTTGAGTTGAAGAGTTGATT+TGG | + | chr7_3:80246743-80246762 | Msa1128360:five_prime_UTR | 30.0% |
| !! | TTGAGTTGAAGAGTTGATTT+GGG | + | chr7_3:80246744-80246763 | Msa1128360:five_prime_UTR | 30.0% |
| TTATCTATAAATCCAGAAGC+AGG | - | chr7_3:80246876-80246895 | None:intergenic | 30.0% | |
| CATGAAAATTAGGGATGATA+AGG | + | chr7_3:80246944-80246963 | Msa1128360:CDS | 30.0% | |
| CTAAATCTATATGCAGGAAA+TGG | + | chr7_3:80247091-80247110 | Msa1128360:intron | 30.0% | |
| GACAATTATATGTCCAGTTT+CGG | - | chr7_3:80247147-80247166 | None:intergenic | 30.0% | |
| CATATAATTGTCACAACCAT+TGG | + | chr7_3:80247155-80247174 | Msa1128360:CDS | 30.0% | |
| !! | ATCTTTTGGTGTAGTTTTTC+AGG | + | chr7_3:80247334-80247353 | Msa1128360:CDS | 30.0% |
| GCTTCAAAGATACAACATTA+GGG | - | chr7_3:80247566-80247585 | None:intergenic | 30.0% | |
| TGCTTCAAAGATACAACATT+AGG | - | chr7_3:80247567-80247586 | None:intergenic | 30.0% | |
| TGTCAAACTTTATTCTTACC+AGG | + | chr7_3:80247713-80247732 | Msa1128360:CDS | 30.0% | |
| ATAGTACATAGAAATGTACC+TGG | - | chr7_3:80247734-80247753 | None:intergenic | 30.0% | |
| AGAATGTAAACGAAACAGTA+TGG | - | chr7_3:80247934-80247953 | None:intergenic | 30.0% | |
| TAGACTCACGCTATAAAAAA+TGG | - | chr7_3:80248431-80248450 | None:intergenic | 30.0% | |
| TCTGAATCACATGACAAATT+TGG | - | chr7_3:80248461-80248480 | None:intergenic | 30.0% | |
| AACGTGTACTTAATTCCAAA+GGG | - | chr7_3:80248501-80248520 | None:intergenic | 30.0% | |
| AATTAAGTACACGTTCCATT+TGG | + | chr7_3:80248506-80248525 | Msa1128360:CDS | 30.0% | |
| CCCTATAATACATAACTGAT+TGG | + | chr7_3:80248583-80248602 | Msa1128360:intron | 30.0% | |
| CCCAATCAGTTATGTATTAT+AGG | - | chr7_3:80248587-80248606 | None:intergenic | 30.0% | |
| AAATGAGCAAAAGAGCAAAA+TGG | - | chr7_3:80248830-80248849 | None:intergenic | 30.0% | |
| AGTTCATGTCATATTTGAAC+CGG | + | chr7_3:80249178-80249197 | Msa1128360:intron | 30.0% | |
| TCAAGCTCAATCTCAAATTT+AGG | + | chr7_3:80249760-80249779 | Msa1128360:intron | 30.0% | |
| AAAGGTAATGTCTTAAATGG+GGG | - | chr7_3:80249875-80249894 | None:intergenic | 30.0% | |
| !! | AAGACATTACCTTTTGTTGT+AGG | + | chr7_3:80249881-80249900 | Msa1128360:intron | 30.0% |
| AATGACTTGAATACGTGAAA+GGG | - | chr7_3:80249936-80249955 | None:intergenic | 30.0% | |
| TAATGACTTGAATACGTGAA+AGG | - | chr7_3:80249937-80249956 | None:intergenic | 30.0% | |
| !!! | TAGTTTTAGAAGTTGAAGGT+GGG | - | chr7_3:80250010-80250029 | None:intergenic | 30.0% |
| !!! | TTAGTTTTAGAAGTTGAAGG+TGG | - | chr7_3:80250011-80250030 | None:intergenic | 30.0% |
| AAATGGTTATACCTTGATCT+TGG | - | chr7_3:80250182-80250201 | None:intergenic | 30.0% | |
| ! | TGAAAAAGCATAAGCACAAA+TGG | - | chr7_3:80250199-80250218 | None:intergenic | 30.0% |
| ! | AATTTTGCTAGACAACAAGA+TGG | - | chr7_3:80250769-80250788 | None:intergenic | 30.0% |
| ATTTAGCACATCAAGTTCTA+TGG | - | chr7_3:80250840-80250859 | None:intergenic | 30.0% | |
| TATCAAATTAGACATTCCCT+TGG | - | chr7_3:80250895-80250914 | None:intergenic | 30.0% | |
| TATGTATGGTATATGGAGAG+AGG | + | chr7_3:80246093-80246112 | Msa1128360:five_prime_UTR | 35.0% | |
| GATCTAGCTATGACTTTGAA+TGG | - | chr7_3:80246356-80246375 | None:intergenic | 35.0% | |
| GAAAAATGAAGCGATGAAAG+AGG | - | chr7_3:80246437-80246456 | None:intergenic | 35.0% | |
| GATCTCAGAGAAAAATCAAG+TGG | - | chr7_3:80246509-80246528 | None:intergenic | 35.0% | |
| !! | TACTCTACTTTTCAGCCATT+TGG | + | chr7_3:80246536-80246555 | Msa1128360:intron | 35.0% |
| !! | ACTCTACTTTTCAGCCATTT+GGG | + | chr7_3:80246537-80246556 | Msa1128360:intron | 35.0% |
| !! | TGAGTTGAAGAGTTGATTTG+GGG | + | chr7_3:80246745-80246764 | Msa1128360:five_prime_UTR | 35.0% |
| TAAGAAGATATGATGGCATC+AGG | + | chr7_3:80246840-80246859 | Msa1128360:exon | 35.0% | |
| GATAAGAATGCAAGTTCAGT+TGG | + | chr7_3:80246891-80246910 | Msa1128360:CDS | 35.0% | |
| GCTGATCTAAATCTATATGC+AGG | + | chr7_3:80247085-80247104 | Msa1128360:intron | 35.0% | |
| ATTTCCATCTACAATGGTAG+CGG | - | chr7_3:80247120-80247139 | None:intergenic | 35.0% | |
| CTACCATTGTAGATGGAAAT+GGG | + | chr7_3:80247120-80247139 | Msa1128360:CDS | 35.0% | |
| ATAATTGTCACAACCATTGG+TGG | + | chr7_3:80247158-80247177 | Msa1128360:CDS | 35.0% | |
| ! | ACAACCATTGGTGGTAAAAA+TGG | + | chr7_3:80247167-80247186 | Msa1128360:CDS | 35.0% |
| AGAAACTGTGGCTATAAAGA+AGG | + | chr7_3:80247482-80247501 | Msa1128360:CDS | 35.0% | |
| AGAAGGTTCTTCAAGATAAG+AGG | + | chr7_3:80247499-80247518 | Msa1128360:CDS | 35.0% | |
| ! | AAGATAAGAGGTACAAGAAC+CGG | + | chr7_3:80247511-80247530 | Msa1128360:CDS | 35.0% |
| TCAAAGATACAACATTAGGG+TGG | - | chr7_3:80247563-80247582 | None:intergenic | 35.0% | |
| TGTTGTAGTGTCTAATCACA+CGG | - | chr7_3:80247665-80247684 | None:intergenic | 35.0% | |
| ! | AAGCTTCTTGGTAATCACAT+TGG | - | chr7_3:80248151-80248170 | None:intergenic | 35.0% |
| ATTACCAAGAAGCTTAGAGA+AGG | + | chr7_3:80248156-80248175 | Msa1128360:CDS | 35.0% | |
| ! | CTTTGGTAATAGTGTCTACT+CGG | + | chr7_3:80248345-80248364 | Msa1128360:CDS | 35.0% |
| ! | GCTATAAAAAATGGTAACGC+AGG | - | chr7_3:80248422-80248441 | None:intergenic | 35.0% |
| ACGTGTACTTAATTCCAAAG+GGG | - | chr7_3:80248500-80248519 | None:intergenic | 35.0% | |
| GAACGTGTACTTAATTCCAA+AGG | - | chr7_3:80248502-80248521 | None:intergenic | 35.0% | |
| AAAGAAACCATACCTCCAAA+TGG | - | chr7_3:80248524-80248543 | None:intergenic | 35.0% | |
| AACTAGGAATGTAAACGAGT+CGG | + | chr7_3:80248852-80248871 | Msa1128360:intron | 35.0% | |
| GTTCATGTCATATTTGAACC+GGG | + | chr7_3:80249179-80249198 | Msa1128360:intron | 35.0% | |
| !! | ACTTGTACCAAAAGAGTATC+AGG | - | chr7_3:80249218-80249237 | None:intergenic | 35.0% |
| GGGGGGAATATACAATATAA+TGG | - | chr7_3:80249343-80249362 | None:intergenic | 35.0% | |
| TAATAACATAGCACGAGTCA+GGG | - | chr7_3:80249394-80249413 | None:intergenic | 35.0% | |
| ATAATAACATAGCACGAGTC+AGG | - | chr7_3:80249395-80249414 | None:intergenic | 35.0% | |
| ATGGTCATACAGGTACAATA+CGG | - | chr7_3:80249543-80249562 | None:intergenic | 35.0% | |
| !!! | TGGGCTTAGTTTTTTTGTCT+TGG | + | chr7_3:80249641-80249660 | Msa1128360:intron | 35.0% |
| TACTTGTATCTCTTGGAACA+CGG | - | chr7_3:80249815-80249834 | None:intergenic | 35.0% | |
| ACTTAGCTACTTGTATCTCT+TGG | - | chr7_3:80249822-80249841 | None:intergenic | 35.0% | |
| ATGACTTGAATACGTGAAAG+GGG | - | chr7_3:80249935-80249954 | None:intergenic | 35.0% | |
| ATTCAAGTCATTAGCTGAAG+AGG | + | chr7_3:80249944-80249963 | Msa1128360:CDS | 35.0% | |
| TATGAAACGAAGCGAATTTG+TGG | + | chr7_3:80250119-80250138 | Msa1128360:CDS | 35.0% | |
| ! | TCCTTCTCAATTAAAGTGTC+TGG | + | chr7_3:80250250-80250269 | Msa1128360:intron | 35.0% |
| ACCAGACACTTTAATTGAGA+AGG | - | chr7_3:80250254-80250273 | None:intergenic | 35.0% | |
| !!! | TTCTTTTTCAGGGACACTAT+CGG | + | chr7_3:80250404-80250423 | Msa1128360:intron | 35.0% |
| !! | TGTCAACTTGTTGGTTGAAA+TGG | + | chr7_3:80250529-80250548 | Msa1128360:intron | 35.0% |
| GAGGAAGACATAACGTATAT+CGG | + | chr7_3:80250635-80250654 | Msa1128360:CDS | 35.0% | |
| ! | ATATCGGCAATGACTTTTGA+TGG | + | chr7_3:80250651-80250670 | Msa1128360:CDS | 35.0% |
| CAAACACAAACTAATGCCAA+GGG | + | chr7_3:80250876-80250895 | Msa1128360:three_prime_UTR | 35.0% | |
| TGGAGGTTGAATGGTCAAAA+AGG | + | chr7_3:80246151-80246170 | Msa1128360:five_prime_UTR | 40.0% | |
| TTTCCTAATTCCGAATCCCA+CGG | + | chr7_3:80246321-80246340 | Msa1128360:five_prime_UTR | 40.0% | |
| TGAATGGAAGTGAAATCCGT+GGG | - | chr7_3:80246340-80246359 | None:intergenic | 40.0% | |
| TTGAATGGAAGTGAAATCCG+TGG | - | chr7_3:80246341-80246360 | None:intergenic | 40.0% | |
| AGGAATGGAATGGAATGGAT+TGG | - | chr7_3:80246378-80246397 | None:intergenic | 40.0% | |
| TACAGAGGAATGGAATGGAA+TGG | - | chr7_3:80246383-80246402 | None:intergenic | 40.0% | |
| AGACTTACAGAGGAATGGAA+TGG | - | chr7_3:80246388-80246407 | None:intergenic | 40.0% | |
| AGAAGAGACTTACAGAGGAA+TGG | - | chr7_3:80246393-80246412 | None:intergenic | 40.0% | |
| AATGGAGAAGAGACTTACAG+AGG | - | chr7_3:80246398-80246417 | None:intergenic | 40.0% | |
| ! | TACTTTTCAGCCATTTGGGT+TGG | + | chr7_3:80246541-80246560 | Msa1128360:intron | 40.0% |
| GTCTTAAACACCAACCCAAA+TGG | - | chr7_3:80246554-80246573 | None:intergenic | 40.0% | |
| !! | GAGTTGAAGAGTTGATTTGG+GGG | + | chr7_3:80246746-80246765 | Msa1128360:five_prime_UTR | 40.0% |
| GAAGCTGTGTATGATCTGAA+AGG | + | chr7_3:80246785-80246804 | Msa1128360:five_prime_UTR | 40.0% | |
| TTCATGTCATTCATCTCCTC+AGG | - | chr7_3:80246930-80246949 | None:intergenic | 40.0% | |
| GCTACCATTGTAGATGGAAA+TGG | + | chr7_3:80247119-80247138 | Msa1128360:CDS | 40.0% | |
| ! | GTTGTTGGACATGGATCTTT+TGG | + | chr7_3:80247320-80247339 | Msa1128360:CDS | 40.0% |
| !! | TGTTCTGCTTTTGCTGTGAT+AGG | + | chr7_3:80247440-80247459 | Msa1128360:intron | 40.0% |
| ! | AGATAAGAGGTACAAGAACC+GGG | + | chr7_3:80247512-80247531 | Msa1128360:CDS | 40.0% |
| CTTCTTCTCAACGACTGAAA+AGG | + | chr7_3:80247590-80247609 | Msa1128360:CDS | 40.0% | |
| AGTTTGCATTGCATTACTCC+TGG | + | chr7_3:80248037-80248056 | Msa1128360:intron | 40.0% | |
| ! | TTGGTAATCACATTGGCATC+TGG | - | chr7_3:80248144-80248163 | None:intergenic | 40.0% |
| AACACCTTCTCTAAGCTTCT+TGG | - | chr7_3:80248163-80248182 | None:intergenic | 40.0% | |
| ACTAAATGAGGTCAGCTACA+TGG | - | chr7_3:80248263-80248282 | None:intergenic | 40.0% | |
| TGATGTGAATATGCAGCTGA+AGG | + | chr7_3:80248316-80248335 | Msa1128360:intron | 40.0% | |
| GATGTGAATATGCAGCTGAA+GGG | + | chr7_3:80248317-80248336 | Msa1128360:intron | 40.0% | |
| CGAGTAGACACTATTACCAA+AGG | - | chr7_3:80248347-80248366 | None:intergenic | 40.0% | |
| GTAATAGTGTCTACTCGGTT+TGG | + | chr7_3:80248350-80248369 | Msa1128360:CDS | 40.0% | |
| TTTAAATCATCCTGCCCCTT+TGG | + | chr7_3:80248483-80248502 | Msa1128360:CDS | 40.0% | |
| TAAGTACACGTTCCATTTGG+AGG | + | chr7_3:80248509-80248528 | Msa1128360:CDS | 40.0% | |
| CATGTTCAATTCTCCTCGAT+GGG | - | chr7_3:80248703-80248722 | None:intergenic | 40.0% | |
| TCATGTTCAATTCTCCTCGA+TGG | - | chr7_3:80248704-80248723 | None:intergenic | 40.0% | |
| ATGCAAACTCAAACCCACTT+GGG | - | chr7_3:80248778-80248797 | None:intergenic | 40.0% | |
| AATGCAAACTCAAACCCACT+TGG | - | chr7_3:80248779-80248798 | None:intergenic | 40.0% | |
| ACTAGGAATGTAAACGAGTC+GGG | + | chr7_3:80248853-80248872 | Msa1128360:intron | 40.0% | |
| CAACTCAAGCTTCAAGTACA+TGG | - | chr7_3:80248884-80248903 | None:intergenic | 40.0% | |
| !! | ACTTCTTAAGCTCTGAAGCA+TGG | + | chr7_3:80249146-80249165 | Msa1128360:intron | 40.0% |
| !! | CTTCTTAAGCTCTGAAGCAT+GGG | + | chr7_3:80249147-80249166 | Msa1128360:intron | 40.0% |
| !! | AAGAGTATCAGGTACAGGTA+TGG | - | chr7_3:80249207-80249226 | None:intergenic | 40.0% |
| ! | ACCTGTACCTGATACTCTTT+TGG | + | chr7_3:80249208-80249227 | Msa1128360:intron | 40.0% |
| !! | ACCAAAAGAGTATCAGGTAC+AGG | - | chr7_3:80249212-80249231 | None:intergenic | 40.0% |
| TGAATACTCCATCTGAGTAC+AGG | + | chr7_3:80249277-80249296 | Msa1128360:intron | 40.0% | |
| !! | CAATACGGGATTTCTAGCTA+AGG | - | chr7_3:80249528-80249547 | None:intergenic | 40.0% |
| TGGTCATACAGGTACAATAC+GGG | - | chr7_3:80249542-80249561 | None:intergenic | 40.0% | |
| GAATCAAGTTCAAGCGTTAC+AGG | - | chr7_3:80249730-80249749 | None:intergenic | 40.0% | |
| TAGAAGTTGAAGGTGGGATT+AGG | - | chr7_3:80250004-80250023 | None:intergenic | 40.0% | |
| TGACACTAACACGTTGACAT+CGG | - | chr7_3:80250336-80250355 | None:intergenic | 40.0% | |
| TTTCTTGTAAACCAACAGCG+AGG | + | chr7_3:80250554-80250573 | Msa1128360:intron | 40.0% | |
| !! | TCGAGGGTTGATGCATATTA+CGG | + | chr7_3:80250613-80250632 | Msa1128360:CDS | 40.0% |
| CTCATACAAATTGGCAATGC+AGG | - | chr7_3:80250728-80250747 | None:intergenic | 40.0% | |
| ATTGCCAATTTGTATGAGCC+AGG | + | chr7_3:80250730-80250749 | Msa1128360:three_prime_UTR | 40.0% | |
| CAACAAGATGGTGAGATGAA+TGG | - | chr7_3:80250757-80250776 | None:intergenic | 40.0% | |
| GCAAACACAAACTAATGCCA+AGG | + | chr7_3:80250875-80250894 | Msa1128360:three_prime_UTR | 40.0% | |
| AGAGGAGTAGTGAGTAGGAT+AGG | + | chr7_3:80246111-80246130 | Msa1128360:five_prime_UTR | 45.0% | |
| GAGGAGTAGTGAGTAGGATA+GGG | + | chr7_3:80246112-80246131 | Msa1128360:five_prime_UTR | 45.0% | |
| ! | TGAGTAGGATAGGGAGCATA+GGG | + | chr7_3:80246121-80246140 | Msa1128360:five_prime_UTR | 45.0% |
| AATCCGTGGGATTCGGAATT+AGG | - | chr7_3:80246327-80246346 | None:intergenic | 45.0% | |
| GAAGTGAAATCCGTGGGATT+CGG | - | chr7_3:80246334-80246353 | None:intergenic | 45.0% | |
| !! | TGAAGAGTTGATTTGGGGGT+TGG | + | chr7_3:80246750-80246769 | Msa1128360:five_prime_UTR | 45.0% |
| GAAGATATGATGGCATCAGG+TGG | + | chr7_3:80246843-80246862 | Msa1128360:exon | 45.0% | |
| ! | TGGTGTTGAAAAGTTGCCTG+AGG | + | chr7_3:80246911-80246930 | Msa1128360:CDS | 45.0% |
| GGTCCCATTTCCATCTACAA+TGG | - | chr7_3:80247126-80247145 | None:intergenic | 45.0% | |
| !!! | CTGGCCATTTTTACCACCAA+TGG | - | chr7_3:80247174-80247193 | None:intergenic | 45.0% |
| TAAAAATGGCCAGCCAAAGC+AGG | + | chr7_3:80247181-80247200 | Msa1128360:CDS | 45.0% | |
| ! | GCTGTGATAGGCAAAGTGTT+TGG | + | chr7_3:80247452-80247471 | Msa1128360:intron | 45.0% |
| ! | TAGGCAAAGTGTTTGGAGAC+TGG | + | chr7_3:80247459-80247478 | Msa1128360:intron | 45.0% |
| TTTGGAGACTGGAGAAACTG+TGG | + | chr7_3:80247470-80247489 | Msa1128360:CDS | 45.0% | |
| ATTGCAAACTATGCGCCTTC+TGG | + | chr7_3:80247536-80247555 | Msa1128360:CDS | 45.0% | |
| ! | GGACGAGCTTTATCTTAACC+TGG | + | chr7_3:80247611-80247630 | Msa1128360:CDS | 45.0% |
| CAGGAACATATTCAAGCACC+AGG | - | chr7_3:80247632-80247651 | None:intergenic | 45.0% | |
| ! | AATGGTAACGCAGGATGATC+AGG | - | chr7_3:80248413-80248432 | None:intergenic | 45.0% |
| GTACTTAATTCCAAAGGGGC+AGG | - | chr7_3:80248496-80248515 | None:intergenic | 45.0% | |
| ACACGTTCCATTTGGAGGTA+TGG | + | chr7_3:80248514-80248533 | Msa1128360:intron | 45.0% | |
| TTCTCCTCGATGGGCAAATT+TGG | - | chr7_3:80248694-80248713 | None:intergenic | 45.0% | |
| AACTCAAACCCACTTGGGTT+GGG | - | chr7_3:80248773-80248792 | None:intergenic | 45.0% | |
| AAACTCAAACCCACTTGGGT+TGG | - | chr7_3:80248774-80248793 | None:intergenic | 45.0% | |
| ATACTCCATCTGAGTACAGG+TGG | + | chr7_3:80249280-80249299 | Msa1128360:intron | 45.0% | |
| TACTCCATCTGAGTACAGGT+GGG | + | chr7_3:80249281-80249300 | Msa1128360:intron | 45.0% | |
| CCTGTATGACCATATCCATG+CGG | + | chr7_3:80249550-80249569 | Msa1128360:intron | 45.0% | |
| CAACAGCGTCCTACAACAAA+AGG | - | chr7_3:80249893-80249912 | None:intergenic | 45.0% | |
| ! | ACGCTGTTGATTGTCCTGAA+TGG | + | chr7_3:80249904-80249923 | Msa1128360:CDS | 45.0% |
| TGAAAGGGGACAATCCATTC+AGG | - | chr7_3:80249921-80249940 | None:intergenic | 45.0% | |
| CGCTTCGTTTCATATACTCG+TGG | - | chr7_3:80250113-80250132 | None:intergenic | 45.0% | |
| GTATATCGTCAGTGTCGTCT+CGG | - | chr7_3:80250285-80250304 | None:intergenic | 45.0% | |
| ! | GACACTATCGGCTGATGAAT+GGG | + | chr7_3:80250416-80250435 | Msa1128360:CDS | 45.0% |
| ! | GATCTTTTCTGCCACTCACT+CGG | - | chr7_3:80250595-80250614 | None:intergenic | 45.0% |
| TGAGTGGCAGAAAAGATCGA+GGG | + | chr7_3:80250597-80250616 | Msa1128360:CDS | 45.0% | |
| !! | AGGGTTGATGCATATTACGG+AGG | + | chr7_3:80250616-80250635 | Msa1128360:CDS | 45.0% |
| TGGTCCTGGCTCATACAAAT+TGG | - | chr7_3:80250737-80250756 | None:intergenic | 45.0% | |
| !!! | TTATCATTTTTTATAATTAT+CGG | + | chr7_3:80247220-80247239 | Msa1128360:intron | 5.0% |
| !! | ATTTATATAGTAAAAAAATA+GGG | - | chr7_3:80249364-80249383 | None:intergenic | 5.0% |
| !! | ATATATAGAATAAAAAAATT+TGG | - | chr7_3:80249429-80249448 | None:intergenic | 5.0% |
| TGGAGAGAGGAGTAGTGAGT+AGG | + | chr7_3:80246106-80246125 | Msa1128360:five_prime_UTR | 50.0% | |
| ! | GTGAGTAGGATAGGGAGCAT+AGG | + | chr7_3:80246120-80246139 | Msa1128360:five_prime_UTR | 50.0% |
| GGAGAAGAGTGGAGGTTGAA+TGG | + | chr7_3:80246142-80246161 | Msa1128360:five_prime_UTR | 50.0% | |
| GAAGCCGCTACCATTGTAGA+TGG | + | chr7_3:80247113-80247132 | Msa1128360:CDS | 50.0% | |
| GATGGAAATGGGACCGAAAC+TGG | + | chr7_3:80247131-80247150 | Msa1128360:CDS | 50.0% | |
| TCCATGTCCAACAACACGCT+CGG | - | chr7_3:80247315-80247334 | None:intergenic | 50.0% | |
| ! | GGCGCATAGTTTGCAATTCC+CGG | - | chr7_3:80247533-80247552 | None:intergenic | 50.0% |
| CAACATTAGGGTGGTCCAGA+AGG | - | chr7_3:80247554-80247573 | None:intergenic | 50.0% | |
| GCATTACTCCTGGTCTACAG+AGG | + | chr7_3:80248047-80248066 | Msa1128360:CDS | 50.0% | |
| GTGTCAGCTTTACTTCGTCC+AGG | + | chr7_3:80248096-80248115 | Msa1128360:CDS | 50.0% | |
| TCAGCTTTACTTCGTCCAGG+AGG | + | chr7_3:80248099-80248118 | Msa1128360:CDS | 50.0% | |
| GTAGCCAAATTTGCCCATCG+AGG | + | chr7_3:80248687-80248706 | Msa1128360:intron | 50.0% | |
| CTTGGAGTGTGCTCTTCTCA+AGG | - | chr7_3:80248729-80248748 | None:intergenic | 50.0% | |
| ! | CTTGAGAAGAGCACACTCCA+AGG | + | chr7_3:80248727-80248746 | Msa1128360:intron | 50.0% |
| !!! | TGGGCTAGTGGTTTTGGCTT+GGG | - | chr7_3:80248754-80248773 | None:intergenic | 50.0% |
| !!! | TTGGGCTAGTGGTTTTGGCT+TGG | - | chr7_3:80248755-80248774 | None:intergenic | 50.0% |
| !!! | TTGGGTTGGGCTAGTGGTTT+TGG | - | chr7_3:80248760-80248779 | None:intergenic | 50.0% |
| TCAGGTACAGGTATGGTACC+CGG | - | chr7_3:80249200-80249219 | None:intergenic | 50.0% | |
| AGTACCCACCTGTACTCAGA+TGG | - | chr7_3:80249288-80249307 | None:intergenic | 50.0% | |
| CCGCATGGATATGGTCATAC+AGG | - | chr7_3:80249553-80249572 | None:intergenic | 50.0% | |
| AGATCTACGCCGCATGGATA+TGG | - | chr7_3:80249562-80249581 | None:intergenic | 50.0% | |
| TCCATGCGGCGTAGATCTTA+AGG | + | chr7_3:80249564-80249583 | Msa1128360:intron | 50.0% | |
| TGTATCTCTTGGAACACGGC+TGG | - | chr7_3:80249811-80249830 | None:intergenic | 50.0% | |
| !! | ATGCGAAGACTTGGTGCGTT+GGG | + | chr7_3:80250147-80250166 | Msa1128360:CDS | 50.0% |
| ! | GGACACTATCGGCTGATGAA+TGG | + | chr7_3:80250415-80250434 | Msa1128360:CDS | 50.0% |
| ! | CCACTCACTCGGTTTTTGTC+AGG | - | chr7_3:80250584-80250603 | None:intergenic | 50.0% |
| CCTGACAAAAACCGAGTGAG+TGG | + | chr7_3:80250581-80250600 | Msa1128360:CDS | 50.0% | |
| GTGAGTGGCAGAAAAGATCG+AGG | + | chr7_3:80250596-80250615 | Msa1128360:CDS | 50.0% | |
| GATGGTGAGATGAATGGTCC+TGG | - | chr7_3:80250751-80250770 | None:intergenic | 50.0% | |
| ! | AGGGAGCATAGGGAGAAGAG+TGG | + | chr7_3:80246131-80246150 | Msa1128360:five_prime_UTR | 55.0% |
| GAGCATAGGGAGAAGAGTGG+AGG | + | chr7_3:80246134-80246153 | Msa1128360:five_prime_UTR | 55.0% | |
| AAACGCGCACACACCTGCTT+TGG | - | chr7_3:80247197-80247216 | None:intergenic | 55.0% | |
| TACATGGCCGAGCGTGTTGT+TGG | + | chr7_3:80247305-80247324 | Msa1128360:CDS | 55.0% | |
| ATCACACGGCTGACAGTCTC+AGG | - | chr7_3:80247651-80247670 | None:intergenic | 55.0% | |
| !!! | CGTCCAGGAGGCGTTTTCAT+CGG | + | chr7_3:80248111-80248130 | Msa1128360:CDS | 55.0% |
| GTTCCGATGAAAACGCCTCC+TGG | - | chr7_3:80248117-80248136 | None:intergenic | 55.0% | |
| GCAGCTGAAGGGTTGACCTT+TGG | + | chr7_3:80248328-80248347 | Msa1128360:intron | 55.0% | |
| !!! | GTGGTTTTGGCTTGGGACCT+TGG | - | chr7_3:80248747-80248766 | None:intergenic | 55.0% |
| AACCACTAGCCCAACCCAAG+TGG | + | chr7_3:80248761-80248780 | Msa1128360:intron | 55.0% | |
| ACCACTAGCCCAACCCAAGT+GGG | + | chr7_3:80248762-80248781 | Msa1128360:intron | 55.0% | |
| GCCTTAAGATCTACGCCGCA+TGG | - | chr7_3:80249568-80249587 | None:intergenic | 55.0% | |
| GTGGACCTCATGCGAAGACT+TGG | + | chr7_3:80250138-80250157 | Msa1128360:CDS | 55.0% | |
| ACGCACCAAGTCTTCGCATG+AGG | - | chr7_3:80250146-80250165 | None:intergenic | 55.0% | |
| !! | CATGCGAAGACTTGGTGCGT+TGG | + | chr7_3:80250146-80250165 | Msa1128360:CDS | 55.0% |
| !! | TGCGAAGACTTGGTGCGTTG+GGG | + | chr7_3:80250148-80250167 | Msa1128360:CDS | 55.0% |
| GGGGATGGCAACCAAGATCA+AGG | + | chr7_3:80250168-80250187 | Msa1128360:CDS | 55.0% | |
| !! | TGTCAGGTTGACCTCGCTGT+TGG | - | chr7_3:80250568-80250587 | None:intergenic | 55.0% |
| !! | GGTGGTGTTGCACCTGCTTC+TGG | + | chr7_3:80246861-80246880 | Msa1128360:CDS | 60.0% |
| ! | GCCGAGCGTGTTGTTGGACA+TGG | + | chr7_3:80247311-80247330 | Msa1128360:CDS | 60.0% |
| AGCACGTGCCTCTGTAGACC+AGG | - | chr7_3:80248058-80248077 | None:intergenic | 60.0% | |
| ! | GGTCTACAGAGGCACGTGCT+CGG | + | chr7_3:80248058-80248077 | Msa1128360:CDS | 60.0% |
| !! | ACCCACTTGGGTTGGGCTAG+TGG | - | chr7_3:80248766-80248785 | None:intergenic | 60.0% |
| !! | GCGAAGACTTGGTGCGTTGG+GGG | + | chr7_3:80250149-80250168 | Msa1128360:CDS | 60.0% |
| !! | AGACTTGGTGCGTTGGGGGA+TGG | + | chr7_3:80250153-80250172 | Msa1128360:CDS | 60.0% |
| GCGCACACACCTGCTTTGGC+TGG | - | chr7_3:80247193-80247212 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 80246077 | 80250958 | 80246077 | ID=Msa1128360;Name=Msa1128360 |
| chr7_3 | mRNA | 80246077 | 80250958 | 80246077 | ID=Msa1128360-mRNA-1;Parent=Msa1128360;Name=Msa1128360-mRNA-1;_AED=0.08;_eAED=0.08;_QI=430|0.90|0.83|1|0.90|0.83|12|288|382 |
| chr7_3 | exon | 80246077 | 80246399 | 80246077 | ID=Msa1128360-mRNA-1:exon:22875;Parent=Msa1128360-mRNA-1 |
| chr7_3 | exon | 80246742 | 80246965 | 80246742 | ID=Msa1128360-mRNA-1:exon:22876;Parent=Msa1128360-mRNA-1 |
| chr7_3 | exon | 80247107 | 80247202 | 80247107 | ID=Msa1128360-mRNA-1:exon:22877;Parent=Msa1128360-mRNA-1 |
| chr7_3 | exon | 80247296 | 80247355 | 80247296 | ID=Msa1128360-mRNA-1:exon:22878;Parent=Msa1128360-mRNA-1 |
| chr7_3 | exon | 80247462 | 80247734 | 80247462 | ID=Msa1128360-mRNA-1:exon:22879;Parent=Msa1128360-mRNA-1 |
| chr7_3 | exon | 80248039 | 80248177 | 80248039 | ID=Msa1128360-mRNA-1:exon:22880;Parent=Msa1128360-mRNA-1 |
| chr7_3 | exon | 80248332 | 80248396 | 80248332 | ID=Msa1128360-mRNA-1:exon:22881;Parent=Msa1128360-mRNA-1 |
| chr7_3 | exon | 80248480 | 80248530 | 80248480 | ID=Msa1128360-mRNA-1:exon:22882;Parent=Msa1128360-mRNA-1 |
| chr7_3 | exon | 80249903 | 80249965 | 80249903 | ID=Msa1128360-mRNA-1:exon:22883;Parent=Msa1128360-mRNA-1 |
| chr7_3 | exon | 80250066 | 80250189 | 80250066 | ID=Msa1128360-mRNA-1:exon:22884;Parent=Msa1128360-mRNA-1 |
| chr7_3 | exon | 80250415 | 80250476 | 80250415 | ID=Msa1128360-mRNA-1:exon:22885;Parent=Msa1128360-mRNA-1 |
| chr7_3 | exon | 80250572 | 80250958 | 80250572 | ID=Msa1128360-mRNA-1:exon:22886;Parent=Msa1128360-mRNA-1 |
| chr7_3 | five_prime_UTR | 80246077 | 80246399 | 80246077 | ID=Msa1128360-mRNA-1:five_prime_utr;Parent=Msa1128360-mRNA-1 |
| chr7_3 | five_prime_UTR | 80246742 | 80246848 | 80246742 | ID=Msa1128360-mRNA-1:five_prime_utr;Parent=Msa1128360-mRNA-1 |
| chr7_3 | CDS | 80246849 | 80246965 | 80246849 | ID=Msa1128360-mRNA-1:cds;Parent=Msa1128360-mRNA-1 |
| chr7_3 | CDS | 80247107 | 80247202 | 80247107 | ID=Msa1128360-mRNA-1:cds;Parent=Msa1128360-mRNA-1 |
| chr7_3 | CDS | 80247296 | 80247355 | 80247296 | ID=Msa1128360-mRNA-1:cds;Parent=Msa1128360-mRNA-1 |
| chr7_3 | CDS | 80247462 | 80247734 | 80247462 | ID=Msa1128360-mRNA-1:cds;Parent=Msa1128360-mRNA-1 |
| chr7_3 | CDS | 80248039 | 80248177 | 80248039 | ID=Msa1128360-mRNA-1:cds;Parent=Msa1128360-mRNA-1 |
| chr7_3 | CDS | 80248332 | 80248396 | 80248332 | ID=Msa1128360-mRNA-1:cds;Parent=Msa1128360-mRNA-1 |
| chr7_3 | CDS | 80248480 | 80248530 | 80248480 | ID=Msa1128360-mRNA-1:cds;Parent=Msa1128360-mRNA-1 |
| chr7_3 | CDS | 80249903 | 80249965 | 80249903 | ID=Msa1128360-mRNA-1:cds;Parent=Msa1128360-mRNA-1 |
| chr7_3 | CDS | 80250066 | 80250189 | 80250066 | ID=Msa1128360-mRNA-1:cds;Parent=Msa1128360-mRNA-1 |
| chr7_3 | CDS | 80250415 | 80250476 | 80250415 | ID=Msa1128360-mRNA-1:cds;Parent=Msa1128360-mRNA-1 |
| chr7_3 | CDS | 80250572 | 80250670 | 80250572 | ID=Msa1128360-mRNA-1:cds;Parent=Msa1128360-mRNA-1 |
| chr7_3 | three_prime_UTR | 80250671 | 80250958 | 80250671 | ID=Msa1128360-mRNA-1:three_prime_utr;Parent=Msa1128360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
