AlfalfaGEDB | Msa1128380

M. sativa cultivar zhongmu-4 / Msa1128380

KEGG: K03083
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1128380	GAU11328.1	99.565	230	1	0	1	230	39	268	6.02e-170	478

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1128380	sp\|P51139\|MSK3_MEDSA	99.130	230	2	0	1	230	182	411	5.64e-172	482

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1128380	G7KTQ8	99.565	230	1	0	1	230	183	412	7.90e-170	483

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1128380	MtrunA17_Chr7g0270371	99.565	230	1	0	1	230	183	412	1.52e-173	483
Msa1128380	MtrunA17_Chr1g0194201	93.478	230	15	0	1	230	183	412	1.62e-162	455
Msa1128380	MtrunA17_Chr1g0193081	88.158	228	27	0	1	228	183	410	2.35e-151	427
Msa1128380	MtrunA17_Chr2g0277011	86.099	223	31	0	1	223	198	420	1.96e-146	415
Msa1128380	MtrunA17_Chr7g0246591	81.448	221	41	0	1	221	249	469	4.55e-138	395
Msa1128380	MtrunA17_Chr2g0320011	80.088	226	44	1	1	226	196	420	2.30e-135	387
Msa1128380	MtrunA17_Chr8g0350311	79.638	221	45	0	1	221	247	467	4.47e-132	380
Msa1128380	MtrunA17_Chr2g0284091	76.549	226	52	1	1	226	148	372	3.02e-131	375
Msa1128380	MtrunA17_Chr4g0045841	41.304	184	103	4	1	182	165	345	4.63e-44	152
Msa1128380	MtrunA17_Chr8g0387401	41.176	187	104	4	1	184	162	345	3.81e-42	147

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1128380	AT5G14640.1	89.035	228	25	1	228	182	409	1.29e-155	438
Msa1128380	AT5G14640.2	89.035	228	25	1	228	182	409	1.29e-155	438
Msa1128380	AT5G26751.1	90.351	228	22	1	228	177	404	4.00e-155	436
Msa1128380	AT3G05840.2	90.625	224	21	1	224	181	404	5.44e-154	434
Msa1128380	AT3G05840.1	90.625	224	21	1	224	181	404	5.44e-154	434
Msa1128380	AT1G09840.11	86.099	223	31	1	223	64	286	8.66e-147	411
Msa1128380	AT1G09840.3	86.099	223	31	1	223	191	413	3.24e-146	414
Msa1128380	AT1G09840.7	86.099	223	31	1	223	191	413	3.24e-146	414
Msa1128380	AT1G09840.10	86.099	223	31	1	223	191	413	3.24e-146	414
Msa1128380	AT1G09840.6	86.099	223	31	1	223	191	413	3.24e-146	414

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Find 76 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATAAATTGGATGGTAGGTT+GGG	0.433469	7_3:+80261066	None:intergenic
AATTTAAACTCTGTATAATT+AGG	0.220898	7_3:+80261914	None:intergenic
AATTTATCATATCATAATAA+TGG	0.350484	7_3:+80260854	None:intergenic
ACAAGATCCACAGCTTCAGG+AGG	0.667608	7_3:+80261764	None:intergenic
ACACCACAGCCATTGACATC+TGG	0.495084	7_3:-80262310	Msa1128380:CDS
ACAGCTGTGCTTCGAAGATT+TGG	0.289263	7_3:+80261719	None:intergenic
ACAGTATTGGAGTATGTCAC+AGG	0.530094	7_3:-80262808	Msa1128380:CDS
ACATATCTTACATCTGTTCT+AGG	0.306834	7_3:-80262373	Msa1128380:CDS
ACCAGCTGACCAGATGTCAA+TGG	0.588179	7_3:+80262301	None:intergenic
ACTAACATTACCTTATGCCA+TGG	0.555829	7_3:+80261872	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCTTATATTCACAACAGTAT+TGG	-	chr7_3:80260854-80260873	Msa1128380:three_prime_UTR	30.0%
ATTCTGTTAGGAAAGTGAAA+TGG	+	chr7_3:80261072-80261091	None:intergenic	30.0%
ATTTCACTTTCCTAACAGAA+TGG	-	chr7_3:80261071-80261090	Msa1128380:three_prime_UTR	30.0%
TTTGGACGTTGTATAAAAAC+AGG	-	chr7_3:80261118-80261137	Msa1128380:three_prime_UTR	30.0%
AAACAAACGAAAGGATTTCA+AGG	+	chr7_3:80261215-80261234	None:intergenic	30.0%
GAACAGATGTAAGATATGTT+TGG	+	chr7_3:80261301-80261320	None:intergenic	30.0%
ACATATCTTACATCTGTTCT+AGG	-	chr7_3:80261302-80261321	Msa1128380:intron	30.0%
ACTTTCTTCTACCTATGTAA+AGG	-	chr7_3:80262518-80262537	Msa1128380:CDS	30.0%
GTATCTAGTCAAATTTCAAG+TGG	-	chr7_3:80262542-80262561	Msa1128380:intron	30.0%
AATAAATTGGATGGTAGGTT+GGG	+	chr7_3:80262612-80262631	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	80260839	80262858	80260839	ID=Msa1128380;Name=Msa1128380
chr7_3	mRNA	80260839	80262858	80260839	ID=Msa1128380-mRNA-1;Parent=Msa1128380;Name=Msa1128380-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|1\|0.87\|1\|1\|1\|8\|383\|230
chr7_3	exon	80260839	80261307	80260839	ID=Msa1128380-mRNA-1:exon:22907;Parent=Msa1128380-mRNA-1
chr7_3	exon	80261402	80261504	80261402	ID=Msa1128380-mRNA-1:exon:22906;Parent=Msa1128380-mRNA-1
chr7_3	exon	80261721	80261804	80261721	ID=Msa1128380-mRNA-1:exon:22905;Parent=Msa1128380-mRNA-1
chr7_3	exon	80261883	80261978	80261883	ID=Msa1128380-mRNA-1:exon:22904;Parent=Msa1128380-mRNA-1
chr7_3	exon	80262133	80262183	80262133	ID=Msa1128380-mRNA-1:exon:22903;Parent=Msa1128380-mRNA-1
chr7_3	exon	80262271	80262411	80262271	ID=Msa1128380-mRNA-1:exon:22902;Parent=Msa1128380-mRNA-1
chr7_3	exon	80262501	80262557	80262501	ID=Msa1128380-mRNA-1:exon:22901;Parent=Msa1128380-mRNA-1
chr7_3	exon	80262784	80262858	80262784	ID=Msa1128380-mRNA-1:exon:22900;Parent=Msa1128380-mRNA-1
chr7_3	CDS	80262784	80262858	80262784	ID=Msa1128380-mRNA-1:cds;Parent=Msa1128380-mRNA-1
chr7_3	CDS	80262501	80262557	80262501	ID=Msa1128380-mRNA-1:cds;Parent=Msa1128380-mRNA-1
chr7_3	CDS	80262271	80262411	80262271	ID=Msa1128380-mRNA-1:cds;Parent=Msa1128380-mRNA-1
chr7_3	CDS	80262133	80262183	80262133	ID=Msa1128380-mRNA-1:cds;Parent=Msa1128380-mRNA-1
chr7_3	CDS	80261883	80261978	80261883	ID=Msa1128380-mRNA-1:cds;Parent=Msa1128380-mRNA-1
chr7_3	CDS	80261721	80261804	80261721	ID=Msa1128380-mRNA-1:cds;Parent=Msa1128380-mRNA-1
chr7_3	CDS	80261402	80261504	80261402	ID=Msa1128380-mRNA-1:cds;Parent=Msa1128380-mRNA-1
chr7_3	CDS	80261222	80261307	80261222	ID=Msa1128380-mRNA-1:cds;Parent=Msa1128380-mRNA-1
chr7_3	three_prime_UTR	80260839	80261221	80260839	ID=Msa1128380-mRNA-1:three_prime_utr;Parent=Msa1128380-mRNA-1

Gene Sequence

>Msa1128380

ATTTGCAGGGCACTTGCTTATATTCACAACAGTATTGGAGTATGTCACAGGGATATTAAACCTCAAAATTTACTGGTCAATCCTCACACCCACCAACTGAAGATATGCGACTTTGGAAGTGCTAAAGTCTTGGTAAAAGGTGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCTGAGCTTATATTCGGTGCAACTGAGTACACCACAGCCATTGACATCTGGTCAGCTGGTTGCGTACTTGGTGAACTTTTGCTTGGCCAGCCACTGTTTCCTGGTGAGAGTGGAGTAGACCAACTTGTGGAAATTATCAAGGTTTTAGGCACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACAGAGTTTAAATTTCCTCAAATCAAAGCTCATCCATGGCATAAGATTTTTCACAAGAGAATGCCTCCTGAAGCTGTGGATCTTGTCTCAAGACTATTGCAATACTCTCCAAATCTTCGAAGCACAGCTTTGGAGGCTTTGGTTCATCCATTCTATGATGAGCTGCGCGATCCAAACACTCGGTTGCCAAATGGGCGTTTCCTTCCACCATTATTTAACTTCAAAGTCAATGAGCTCAAGGGAGTACCTGCAGAGATGCTGGTGAAACTGGTTCCACCTCATGCAAGAAAGCAATGTGCCTTGTTCGGGTCATCATGA

Protein sequence

>Msa1128380

ICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFYDELRDPNTRLPNGRFLPPLFNFKVNELKGVPAEMLVKLVPPHARKQCALFGSS*