Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130000 | AES82715.1 | 79.310 | 58 | 12 | 0 | 77 | 134 | 38 | 95 | 5.12e-20 | 90.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130000 | sp|Q8VYG0|LRL13_ARATH | 36.552 | 145 | 81 | 3 | 15 | 149 | 397 | 540 | 3.33e-17 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130000 | G7L2Z1 | 79.310 | 58 | 12 | 0 | 77 | 134 | 38 | 95 | 2.44e-20 | 90.1 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130000 | MtrunA17_Chr6g0467601 | 50.505 | 99 | 42 | 3 | 57 | 149 | 239 | 336 | 7.48e-20 | 85.5 |
| Msa1130000 | MtrunA17_Chr6g0483931 | 50.505 | 99 | 42 | 3 | 57 | 149 | 454 | 551 | 6.19e-19 | 83.2 |
| Msa1130000 | MtrunA17_Chr6g0467631 | 51.190 | 84 | 36 | 2 | 70 | 149 | 450 | 532 | 6.53e-18 | 80.1 |
| Msa1130000 | MtrunA17_Chr1g0209361 | 50.000 | 84 | 37 | 2 | 70 | 149 | 443 | 525 | 6.81e-18 | 80.1 |
| Msa1130000 | MtrunA17_Chr7g0251121 | 48.352 | 91 | 39 | 3 | 66 | 149 | 460 | 549 | 4.32e-17 | 77.8 |
| Msa1130000 | MtrunA17_Chr1g0209431 | 47.619 | 84 | 39 | 2 | 70 | 149 | 438 | 520 | 3.68e-16 | 75.1 |
| Msa1130000 | MtrunA17_Chr1g0158201 | 33.951 | 162 | 90 | 4 | 4 | 149 | 435 | 595 | 4.63e-16 | 74.7 |
| Msa1130000 | MtrunA17_Chr8g0376061 | 51.190 | 84 | 36 | 2 | 70 | 149 | 436 | 518 | 5.09e-16 | 74.7 |
| Msa1130000 | MtrunA17_Chr1g0158211 | 33.951 | 162 | 90 | 4 | 4 | 149 | 173 | 333 | 6.49e-16 | 74.3 |
| Msa1130000 | MtrunA17_Chr1g0209381 | 48.810 | 84 | 38 | 2 | 70 | 149 | 428 | 510 | 8.88e-16 | 73.9 |
| Msa1130000 | MtrunA17_Chr5g0423061 | 50.000 | 84 | 37 | 2 | 70 | 149 | 413 | 495 | 2.09e-15 | 72.8 |
| Msa1130000 | MtrunA17_Chr1g0209391 | 47.619 | 84 | 39 | 2 | 70 | 149 | 400 | 482 | 2.75e-15 | 72.4 |
| Msa1130000 | MtrunA17_Chr8g0374031 | 34.641 | 153 | 86 | 4 | 9 | 152 | 371 | 518 | 8.34e-15 | 71.2 |
| Msa1130000 | MtrunA17_Chr1g0158251 | 32.716 | 162 | 92 | 4 | 4 | 149 | 440 | 600 | 1.53e-14 | 70.5 |
| Msa1130000 | MtrunA17_Chr1g0158231 | 32.716 | 162 | 92 | 4 | 4 | 149 | 151 | 311 | 4.37e-14 | 68.9 |
| Msa1130000 | MtrunA17_Chr1g0148501 | 34.568 | 162 | 88 | 6 | 4 | 149 | 454 | 613 | 9.79e-14 | 68.2 |
| Msa1130000 | MtrunA17_Chr1g0158261 | 32.099 | 162 | 93 | 4 | 4 | 149 | 431 | 591 | 1.02e-13 | 68.2 |
| Msa1130000 | MtrunA17_Chr6g0483731 | 34.228 | 149 | 82 | 6 | 13 | 149 | 109 | 253 | 1.40e-13 | 67.4 |
| Msa1130000 | MtrunA17_Chr1g0158171 | 33.333 | 162 | 91 | 4 | 4 | 149 | 162 | 322 | 1.45e-13 | 67.4 |
| Msa1130000 | MtrunA17_Chr1g0148461 | 32.544 | 169 | 82 | 5 | 4 | 149 | 461 | 620 | 1.83e-13 | 67.4 |
| Msa1130000 | MtrunA17_Chr5g0403051 | 31.818 | 154 | 90 | 4 | 9 | 152 | 364 | 512 | 9.53e-12 | 62.4 |
| Msa1130000 | MtrunA17_Chr1g0148511 | 32.099 | 162 | 93 | 5 | 4 | 149 | 447 | 607 | 1.26e-11 | 62.0 |
| Msa1130000 | MtrunA17_Chr8g0352381 | 37.000 | 100 | 55 | 2 | 57 | 149 | 615 | 713 | 1.80e-11 | 61.6 |
| Msa1130000 | MtrunA17_Chr3g0112391 | 43.478 | 92 | 50 | 2 | 58 | 149 | 440 | 529 | 1.96e-11 | 61.2 |
| Msa1130000 | MtrunA17_Chr7g0265391 | 30.178 | 169 | 87 | 6 | 3 | 149 | 369 | 528 | 3.47e-11 | 60.5 |
| Msa1130000 | MtrunA17_Chr1g0148491 | 30.864 | 162 | 95 | 5 | 4 | 149 | 361 | 521 | 3.61e-11 | 60.5 |
| Msa1130000 | MtrunA17_Chr7g0248881 | 30.822 | 146 | 89 | 4 | 15 | 149 | 394 | 538 | 5.31e-11 | 60.1 |
| Msa1130000 | MtrunA17_Chr3g0125461 | 32.022 | 178 | 103 | 6 | 3 | 163 | 467 | 643 | 5.96e-11 | 60.1 |
| Msa1130000 | MtrunA17_Chr3g0125471 | 31.176 | 170 | 85 | 6 | 3 | 149 | 384 | 544 | 6.98e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130000 | AT5G38210.1 | 36.552 | 145 | 81 | 3 | 15 | 149 | 397 | 540 | 3.38e-18 | 81.3 |
| Msa1130000 | AT5G38210.2 | 36.552 | 145 | 81 | 3 | 15 | 149 | 409 | 552 | 1.19e-17 | 79.7 |
| Msa1130000 | AT5G38210.3 | 36.552 | 145 | 81 | 3 | 15 | 149 | 391 | 534 | 1.19e-17 | 79.7 |
| Msa1130000 | AT1G66880.1 | 36.552 | 145 | 81 | 3 | 15 | 149 | 1006 | 1149 | 3.74e-17 | 78.6 |
| Msa1130000 | AT1G66880.3 | 36.552 | 145 | 81 | 3 | 15 | 149 | 385 | 528 | 8.41e-17 | 77.4 |
| Msa1130000 | AT1G66880.2 | 36.552 | 145 | 81 | 3 | 15 | 149 | 627 | 770 | 9.34e-17 | 77.0 |
| Msa1130000 | AT2G23450.2 | 34.416 | 154 | 86 | 4 | 9 | 152 | 382 | 530 | 2.28e-16 | 75.9 |
| Msa1130000 | AT2G23450.1 | 34.416 | 154 | 86 | 4 | 9 | 152 | 382 | 530 | 2.28e-16 | 75.9 |
| Msa1130000 | AT1G18390.2 | 46.429 | 84 | 40 | 2 | 70 | 149 | 444 | 526 | 1.14e-15 | 73.9 |
| Msa1130000 | AT1G18390.1 | 37.313 | 134 | 73 | 5 | 26 | 149 | 388 | 520 | 1.68e-15 | 73.6 |
| Msa1130000 | AT1G25390.1 | 44.792 | 96 | 40 | 3 | 58 | 149 | 388 | 474 | 3.00e-15 | 72.8 |
| Msa1130000 | AT1G25390.2 | 44.792 | 96 | 40 | 3 | 58 | 149 | 388 | 474 | 3.00e-15 | 72.8 |
| Msa1130000 | AT5G66790.1 | 35.484 | 155 | 84 | 7 | 9 | 149 | 348 | 500 | 3.85e-14 | 69.7 |
| Msa1130000 | AT1G16120.1 | 31.176 | 170 | 85 | 6 | 3 | 149 | 452 | 612 | 6.66e-14 | 68.9 |
| Msa1130000 | AT1G69730.1 | 29.630 | 162 | 97 | 4 | 4 | 149 | 471 | 631 | 9.27e-14 | 68.6 |
| Msa1130000 | AT1G79670.2 | 30.460 | 174 | 79 | 5 | 4 | 149 | 408 | 567 | 3.53e-13 | 67.0 |
| Msa1130000 | AT1G79670.1 | 30.460 | 174 | 79 | 5 | 4 | 149 | 445 | 604 | 3.56e-13 | 67.0 |
| Msa1130000 | AT4G39110.1 | 34.746 | 118 | 61 | 3 | 39 | 149 | 600 | 708 | 2.08e-12 | 64.7 |
| Msa1130000 | AT1G16130.1 | 29.885 | 174 | 80 | 5 | 4 | 149 | 440 | 599 | 2.24e-12 | 64.7 |
| Msa1130000 | AT4G31110.2 | 30.000 | 160 | 95 | 4 | 6 | 149 | 457 | 615 | 2.92e-12 | 64.3 |
| Msa1130000 | AT4G31110.1 | 30.000 | 160 | 95 | 4 | 6 | 149 | 479 | 637 | 2.93e-12 | 64.3 |
| Msa1130000 | AT1G16150.1 | 28.736 | 174 | 82 | 5 | 4 | 149 | 448 | 607 | 3.08e-12 | 64.3 |
| Msa1130000 | AT2G21480.1 | 34.746 | 118 | 61 | 3 | 39 | 149 | 599 | 707 | 1.53e-11 | 62.0 |
| Msa1130000 | AT1G16160.1 | 31.447 | 159 | 93 | 5 | 6 | 149 | 458 | 615 | 2.20e-11 | 61.6 |
| Msa1130000 | AT1G79680.1 | 30.247 | 162 | 96 | 4 | 4 | 149 | 457 | 617 | 2.22e-11 | 61.6 |
| Msa1130000 | AT3G53840.1 | 41.304 | 92 | 46 | 2 | 65 | 149 | 452 | 542 | 2.73e-11 | 61.2 |
| Msa1130000 | AT4G31100.1 | 28.750 | 160 | 97 | 4 | 6 | 149 | 470 | 628 | 3.92e-11 | 60.8 |
Find 32 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGTAACGACATAATATT+TGG | 0.222579 | 7_3:-82065262 | None:intergenic |
| TTTCAGGAAAGCGTAGATTT+TGG | 0.265085 | 7_3:+82065668 | Msa1130000:CDS |
| TCCTTGAAGCGAATTATATT+CGG | 0.307244 | 7_3:-82064670 | None:intergenic |
| CTAATAGAGTGGAGGCAATT+AGG | 0.312378 | 7_3:+82065644 | Msa1130000:CDS |
| TCAGAATGATCTAGATAAAC+TGG | 0.347908 | 7_3:-82065580 | None:intergenic |
| CTTGTGCACCTGTTCGAATA+TGG | 0.353234 | 7_3:-82065552 | None:intergenic |
| CCAAATATTATGTCGTTACA+TGG | 0.416832 | 7_3:+82065262 | Msa1130000:CDS |
| CCCGAATATAATTCGCTTCA+AGG | 0.424576 | 7_3:+82064669 | Msa1130000:CDS |
| GCTGTCTGCTGCTGCCTCCA+CGG | 0.475102 | 7_3:-82063858 | None:intergenic |
| CCTTGAAGCGAATTATATTC+GGG | 0.486169 | 7_3:-82064669 | None:intergenic |
| TGGAGGCAGCAGCAGACAGC+AGG | 0.495010 | 7_3:+82063861 | Msa1130000:CDS |
| GATCAAAGCCATATTCGAAC+AGG | 0.496465 | 7_3:+82065544 | Msa1130000:CDS |
| TTATCAACCACAGGTCTCTT+CGG | 0.501774 | 7_3:+82064644 | Msa1130000:CDS |
| AAGTGATAGTTCTAATAGAG+TGG | 0.507803 | 7_3:+82065633 | Msa1130000:CDS |
| TAGAACGAACTTAAAACTCA+AGG | 0.532153 | 7_3:+82065228 | Msa1130000:intron |
| CATATTCGAACAGGTGCACA+AGG | 0.558852 | 7_3:+82065553 | Msa1130000:CDS |
| GTAACGACATAATATTTGGA+TGG | 0.561090 | 7_3:-82065258 | None:intergenic |
| ACATAATATTTGGATGGGAA+AGG | 0.561998 | 7_3:-82065252 | None:intergenic |
| TAACGACATAATATTTGGAT+GGG | 0.564181 | 7_3:-82065257 | None:intergenic |
| TTTCCAGATTGATGAGAATG+TGG | 0.567042 | 7_3:+82064612 | Msa1130000:intron |
| GCTGACTTTCATGCAAAAGT+AGG | 0.574540 | 7_3:+82065490 | Msa1130000:CDS |
| CACGGCGGCAATGTGGTCCG+TGG | 0.578074 | 7_3:+82063841 | None:intergenic |
| CTAGAGAGATTATCAACCAC+AGG | 0.592807 | 7_3:+82064635 | Msa1130000:CDS |
| GGCAGCAGCAGACAGCAGGA+CGG | 0.614936 | 7_3:+82063865 | Msa1130000:CDS |
| TTACATGGGTGCACCTCACG+TGG | 0.616764 | 7_3:+82065277 | Msa1130000:CDS |
| GGCGGCAATGTGGTCCGTGG+AGG | 0.622427 | 7_3:+82063844 | None:intergenic |
| GGTTAGGATGAATATTGCAG+TGG | 0.622926 | 7_3:+82065399 | Msa1130000:intron |
| CAAATATTATGTCGTTACAT+GGG | 0.630277 | 7_3:+82065263 | Msa1130000:CDS |
| TGATAGTTCTAATAGAGTGG+AGG | 0.652354 | 7_3:+82065636 | Msa1130000:CDS |
| TCGGGTGCCGAAGAGACCTG+TGG | 0.684900 | 7_3:-82064651 | None:intergenic |
| GAATATAATTCGCTTCAAGG+AGG | 0.726990 | 7_3:+82064672 | Msa1130000:CDS |
| ATATTCGAACAGGTGCACAA+GGG | 0.753564 | 7_3:+82065554 | Msa1130000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTAAAAAGTGAAA+TGG | - | chr7_3:82064497-82064516 | None:intergenic | 10.0% |
| !!! | ATATTTTTTAAAAAGTGAAA+TGG | - | chr7_3:82064497-82064516 | None:intergenic | 10.0% |
| !!! | AATTGTTTGATCTTTTTATA+TGG | - | chr7_3:82064924-82064943 | None:intergenic | 15.0% |
| !!! | TAAGATTATGAATTTTCAAT+TGG | + | chr7_3:82064943-82064962 | Msa1130000:intron | 15.0% |
| !!! | AATTGTTTGATCTTTTTATA+TGG | - | chr7_3:82064924-82064943 | None:intergenic | 15.0% |
| !!! | TAAGATTATGAATTTTCAAT+TGG | + | chr7_3:82064943-82064962 | Msa1130000:intron | 15.0% |
| !! | AACCCTAGAAATAAAAAATT+GGG | + | chr7_3:82064081-82064100 | Msa1130000:intron | 20.0% |
| !!! | TTTTAGAACTTAGAACATAA+TGG | + | chr7_3:82064184-82064203 | Msa1130000:intron | 20.0% |
| !! | AAAACTATTATTTAGACATC+TGG | + | chr7_3:82064548-82064567 | Msa1130000:intron | 20.0% |
| !! | AAACTATTATTTAGACATCT+GGG | + | chr7_3:82064549-82064568 | Msa1130000:intron | 20.0% |
| !! | TCATATTATATTTCTTGTCT+AGG | + | chr7_3:82065132-82065151 | Msa1130000:intron | 20.0% |
| !! | AACCCTAGAAATAAAAAATT+GGG | + | chr7_3:82064081-82064100 | Msa1130000:intron | 20.0% |
| !!! | TTTTAGAACTTAGAACATAA+TGG | + | chr7_3:82064184-82064203 | Msa1130000:intron | 20.0% |
| !! | AAAACTATTATTTAGACATC+TGG | + | chr7_3:82064548-82064567 | Msa1130000:intron | 20.0% |
| !! | AAACTATTATTTAGACATCT+GGG | + | chr7_3:82064549-82064568 | Msa1130000:intron | 20.0% |
| !! | TCATATTATATTTCTTGTCT+AGG | + | chr7_3:82065132-82065151 | Msa1130000:intron | 20.0% |
| ! | ATGAATGAAACATAGAATGA+CGG | - | chr7_3:82063964-82063983 | None:intergenic | 25.0% |
| ! | GAACCCTAGAAATAAAAAAT+TGG | + | chr7_3:82064080-82064099 | Msa1130000:intron | 25.0% |
| ! | ACCCTAGAAATAAAAAATTG+GGG | + | chr7_3:82064082-82064101 | Msa1130000:intron | 25.0% |
| ! | TCAAACAACATAGAAAATCA+AGG | - | chr7_3:82064118-82064137 | None:intergenic | 25.0% |
| !!! | GATTTCCTACATTTTTTGAA+AGG | + | chr7_3:82064328-82064347 | Msa1130000:intron | 25.0% |
| ! | ATTAGAACAAGAGATAACTT+TGG | + | chr7_3:82064462-82064481 | Msa1130000:intron | 25.0% |
| !!! | GATTTTATTTGTTCATCTGT+TGG | + | chr7_3:82064699-82064718 | Msa1130000:intron | 25.0% |
| !! | TTGTTAACTGTTACTTCAAT+GGG | + | chr7_3:82064760-82064779 | Msa1130000:intron | 25.0% |
| ! | TTACTATTGCTAAATGAGTA+GGG | - | chr7_3:82064812-82064831 | None:intergenic | 25.0% |
| ! | ATTACTATTGCTAAATGAGT+AGG | - | chr7_3:82064813-82064832 | None:intergenic | 25.0% |
| ! | TACTCATTTAGCAATAGTAA+TGG | + | chr7_3:82064812-82064831 | Msa1130000:intron | 25.0% |
| !!! | TAGTAATGGAAAGTGTTTTA+TGG | + | chr7_3:82064826-82064845 | Msa1130000:intron | 25.0% |
| ! | TATAATGACTATTGACAGTA+AGG | - | chr7_3:82064887-82064906 | None:intergenic | 25.0% |
| ! | AAAACATACTCAATTTCCTA+TGG | - | chr7_3:82065049-82065068 | None:intergenic | 25.0% |
| ! | TAACGACATAATATTTGGAT+GGG | - | chr7_3:82065260-82065279 | None:intergenic | 25.0% |
| ! | CAAATATTATGTCGTTACAT+GGG | + | chr7_3:82065263-82065282 | Msa1130000:CDS | 25.0% |
| ! | CAATATAGGGATAATTAACT+TGG | + | chr7_3:82065374-82065393 | Msa1130000:intron | 25.0% |
| ! | ATGAATGAAACATAGAATGA+CGG | - | chr7_3:82063964-82063983 | None:intergenic | 25.0% |
| ! | GAACCCTAGAAATAAAAAAT+TGG | + | chr7_3:82064080-82064099 | Msa1130000:intron | 25.0% |
| ! | ACCCTAGAAATAAAAAATTG+GGG | + | chr7_3:82064082-82064101 | Msa1130000:intron | 25.0% |
| ! | TCAAACAACATAGAAAATCA+AGG | - | chr7_3:82064118-82064137 | None:intergenic | 25.0% |
| !!! | GATTTCCTACATTTTTTGAA+AGG | + | chr7_3:82064328-82064347 | Msa1130000:intron | 25.0% |
| ! | ATTAGAACAAGAGATAACTT+TGG | + | chr7_3:82064462-82064481 | Msa1130000:intron | 25.0% |
| !!! | GATTTTATTTGTTCATCTGT+TGG | + | chr7_3:82064699-82064718 | Msa1130000:intron | 25.0% |
| !! | TTGTTAACTGTTACTTCAAT+GGG | + | chr7_3:82064760-82064779 | Msa1130000:intron | 25.0% |
| ! | TTACTATTGCTAAATGAGTA+GGG | - | chr7_3:82064812-82064831 | None:intergenic | 25.0% |
| ! | ATTACTATTGCTAAATGAGT+AGG | - | chr7_3:82064813-82064832 | None:intergenic | 25.0% |
| ! | TACTCATTTAGCAATAGTAA+TGG | + | chr7_3:82064812-82064831 | Msa1130000:intron | 25.0% |
| !!! | TAGTAATGGAAAGTGTTTTA+TGG | + | chr7_3:82064826-82064845 | Msa1130000:intron | 25.0% |
| ! | TATAATGACTATTGACAGTA+AGG | - | chr7_3:82064887-82064906 | None:intergenic | 25.0% |
| ! | AAAACATACTCAATTTCCTA+TGG | - | chr7_3:82065049-82065068 | None:intergenic | 25.0% |
| ! | TAACGACATAATATTTGGAT+GGG | - | chr7_3:82065260-82065279 | None:intergenic | 25.0% |
| ! | CAAATATTATGTCGTTACAT+GGG | + | chr7_3:82065263-82065282 | Msa1130000:CDS | 25.0% |
| ! | CAATATAGGGATAATTAACT+TGG | + | chr7_3:82065374-82065393 | Msa1130000:intron | 25.0% |
| ! | GTTTTCTTGATTTTCAGTTC+AGG | + | chr7_3:82063927-82063946 | Msa1130000:intron | 30.0% |
| AGTGAAAGGAATCAAATCAA+AGG | - | chr7_3:82064041-82064060 | None:intergenic | 30.0% | |
| !!! | CCCCCAATTTTTTATTTCTA+GGG | - | chr7_3:82064086-82064105 | None:intergenic | 30.0% |
| CCCTAGAAATAAAAAATTGG+GGG | + | chr7_3:82064083-82064102 | Msa1130000:intron | 30.0% | |
| !!! | TCCCCCAATTTTTTATTTCT+AGG | - | chr7_3:82064087-82064106 | None:intergenic | 30.0% |
| TTGAATTGAATCAGCAACAT+AGG | - | chr7_3:82064158-82064177 | None:intergenic | 30.0% | |
| CAACACCTTTCAAAAAATGT+AGG | - | chr7_3:82064336-82064355 | None:intergenic | 30.0% | |
| !!! | TTTTTGAAAGGTGTTGTTTC+TGG | + | chr7_3:82064340-82064359 | Msa1130000:intron | 30.0% |
| ATTGGCGCCTATATAAATAT+AGG | + | chr7_3:82064364-82064383 | Msa1130000:intron | 30.0% | |
| ATTGGCGCCTATATTTATAT+AGG | - | chr7_3:82064374-82064393 | None:intergenic | 30.0% | |
| CTATGACTTTCTTGTATAGA+TGG | - | chr7_3:82064441-82064460 | None:intergenic | 30.0% | |
| ATGAAGTAGCAGAAAAAGTA+AGG | - | chr7_3:82064593-82064612 | None:intergenic | 30.0% | |
| TCCTTGAAGCGAATTATATT+CGG | - | chr7_3:82064673-82064692 | None:intergenic | 30.0% | |
| ! | GTTGTTAACTGTTACTTCAA+TGG | + | chr7_3:82064759-82064778 | Msa1130000:intron | 30.0% |
| ! | TGTTAACTGTTACTTCAATG+GGG | + | chr7_3:82064761-82064780 | Msa1130000:intron | 30.0% |
| TACTATTGCTAAATGAGTAG+GGG | - | chr7_3:82064811-82064830 | None:intergenic | 30.0% | |
| TAGAACGAACTTAAAACTCA+AGG | + | chr7_3:82065228-82065247 | Msa1130000:intron | 30.0% | |
| ACATAATATTTGGATGGGAA+AGG | - | chr7_3:82065255-82065274 | None:intergenic | 30.0% | |
| GTAACGACATAATATTTGGA+TGG | - | chr7_3:82065261-82065280 | None:intergenic | 30.0% | |
| CCATGTAACGACATAATATT+TGG | - | chr7_3:82065265-82065284 | None:intergenic | 30.0% | |
| CCAAATATTATGTCGTTACA+TGG | + | chr7_3:82065262-82065281 | Msa1130000:CDS | 30.0% | |
| ! | ATAGGGATAATTAACTTGGA+AGG | + | chr7_3:82065378-82065397 | Msa1130000:intron | 30.0% |
| ! | GATAATTAACTTGGAAGGTT+AGG | + | chr7_3:82065383-82065402 | Msa1130000:intron | 30.0% |
| AGCGTCAAGAAAAATATTTC+TGG | - | chr7_3:82065473-82065492 | None:intergenic | 30.0% | |
| TCAGAATGATCTAGATAAAC+TGG | - | chr7_3:82065583-82065602 | None:intergenic | 30.0% | |
| !! | TATCACTTTTATGAGTAAGC+TGG | - | chr7_3:82065621-82065640 | None:intergenic | 30.0% |
| !! | AAGTGATAGTTCTAATAGAG+TGG | + | chr7_3:82065633-82065652 | Msa1130000:CDS | 30.0% |
| ! | GTTTTCTTGATTTTCAGTTC+AGG | + | chr7_3:82063927-82063946 | Msa1130000:intron | 30.0% |
| AGTGAAAGGAATCAAATCAA+AGG | - | chr7_3:82064041-82064060 | None:intergenic | 30.0% | |
| !!! | CCCCCAATTTTTTATTTCTA+GGG | - | chr7_3:82064086-82064105 | None:intergenic | 30.0% |
| CCCTAGAAATAAAAAATTGG+GGG | + | chr7_3:82064083-82064102 | Msa1130000:intron | 30.0% | |
| !!! | TCCCCCAATTTTTTATTTCT+AGG | - | chr7_3:82064087-82064106 | None:intergenic | 30.0% |
| TTGAATTGAATCAGCAACAT+AGG | - | chr7_3:82064158-82064177 | None:intergenic | 30.0% | |
| CAACACCTTTCAAAAAATGT+AGG | - | chr7_3:82064336-82064355 | None:intergenic | 30.0% | |
| !!! | TTTTTGAAAGGTGTTGTTTC+TGG | + | chr7_3:82064340-82064359 | Msa1130000:intron | 30.0% |
| ATTGGCGCCTATATAAATAT+AGG | + | chr7_3:82064364-82064383 | Msa1130000:intron | 30.0% | |
| ATTGGCGCCTATATTTATAT+AGG | - | chr7_3:82064374-82064393 | None:intergenic | 30.0% | |
| CTATGACTTTCTTGTATAGA+TGG | - | chr7_3:82064441-82064460 | None:intergenic | 30.0% | |
| ATGAAGTAGCAGAAAAAGTA+AGG | - | chr7_3:82064593-82064612 | None:intergenic | 30.0% | |
| TCCTTGAAGCGAATTATATT+CGG | - | chr7_3:82064673-82064692 | None:intergenic | 30.0% | |
| ! | GTTGTTAACTGTTACTTCAA+TGG | + | chr7_3:82064759-82064778 | Msa1130000:intron | 30.0% |
| ! | TGTTAACTGTTACTTCAATG+GGG | + | chr7_3:82064761-82064780 | Msa1130000:intron | 30.0% |
| TACTATTGCTAAATGAGTAG+GGG | - | chr7_3:82064811-82064830 | None:intergenic | 30.0% | |
| TAGAACGAACTTAAAACTCA+AGG | + | chr7_3:82065228-82065247 | Msa1130000:intron | 30.0% | |
| ACATAATATTTGGATGGGAA+AGG | - | chr7_3:82065255-82065274 | None:intergenic | 30.0% | |
| GTAACGACATAATATTTGGA+TGG | - | chr7_3:82065261-82065280 | None:intergenic | 30.0% | |
| CCATGTAACGACATAATATT+TGG | - | chr7_3:82065265-82065284 | None:intergenic | 30.0% | |
| CCAAATATTATGTCGTTACA+TGG | + | chr7_3:82065262-82065281 | Msa1130000:CDS | 30.0% | |
| ! | ATAGGGATAATTAACTTGGA+AGG | + | chr7_3:82065378-82065397 | Msa1130000:intron | 30.0% |
| ! | GATAATTAACTTGGAAGGTT+AGG | + | chr7_3:82065383-82065402 | Msa1130000:intron | 30.0% |
| AGCGTCAAGAAAAATATTTC+TGG | - | chr7_3:82065473-82065492 | None:intergenic | 30.0% | |
| TCAGAATGATCTAGATAAAC+TGG | - | chr7_3:82065583-82065602 | None:intergenic | 30.0% | |
| !! | TATCACTTTTATGAGTAAGC+TGG | - | chr7_3:82065621-82065640 | None:intergenic | 30.0% |
| !! | AAGTGATAGTTCTAATAGAG+TGG | + | chr7_3:82065633-82065652 | Msa1130000:CDS | 30.0% |
| GAAAACAACAAACTGAAGTG+AGG | - | chr7_3:82063913-82063932 | None:intergenic | 35.0% | |
| AGAGAACAAACTGAAGTGAA+AGG | - | chr7_3:82063999-82064018 | None:intergenic | 35.0% | |
| TTCAAGCAAACTGAAGTGAA+AGG | - | chr7_3:82064055-82064074 | None:intergenic | 35.0% | |
| ! | GACTTGATTTTGTACTGTAC+TGG | + | chr7_3:82064228-82064247 | Msa1130000:intron | 35.0% |
| !! | AAAGGTGTTGTTTCTGGTAT+TGG | + | chr7_3:82064346-82064365 | Msa1130000:intron | 35.0% |
| CTGCAGAACTACTAATGTAT+TGG | - | chr7_3:82064392-82064411 | None:intergenic | 35.0% | |
| GACTTTCTTGTATAGATGGT+TGG | - | chr7_3:82064437-82064456 | None:intergenic | 35.0% | |
| AGAACAAGAGATAACTTTGG+TGG | + | chr7_3:82064465-82064484 | Msa1130000:intron | 35.0% | |
| TTTCCAGATTGATGAGAATG+TGG | + | chr7_3:82064612-82064631 | Msa1130000:intron | 35.0% | |
| CCTTGAAGCGAATTATATTC+GGG | - | chr7_3:82064672-82064691 | None:intergenic | 35.0% | |
| GAATATAATTCGCTTCAAGG+AGG | + | chr7_3:82064672-82064691 | Msa1130000:CDS | 35.0% | |
| !! | TACTTCAATGGGGTTTTGAT+TGG | + | chr7_3:82064771-82064790 | Msa1130000:intron | 35.0% |
| AAATTGACTGCAATGACAGT+AGG | + | chr7_3:82065014-82065033 | Msa1130000:intron | 35.0% | |
| CAGTAGGTAATTCTTACCAT+AGG | + | chr7_3:82065030-82065049 | Msa1130000:intron | 35.0% | |
| GTATGTGTCCAATGAAATTG+TGG | + | chr7_3:82065327-82065346 | Msa1130000:intron | 35.0% | |
| GTGATCAACCACAATTTCAT+TGG | - | chr7_3:82065338-82065357 | None:intergenic | 35.0% | |
| !!! | AAGATGTTTTAGTGCTCTAG+TGG | - | chr7_3:82065428-82065447 | None:intergenic | 35.0% |
| !! | TGATAGTTCTAATAGAGTGG+AGG | + | chr7_3:82065636-82065655 | Msa1130000:CDS | 35.0% |
| !! | TTTCAGGAAAGCGTAGATTT+TGG | + | chr7_3:82065668-82065687 | Msa1130000:CDS | 35.0% |
| GAAAACAACAAACTGAAGTG+AGG | - | chr7_3:82063913-82063932 | None:intergenic | 35.0% | |
| AGAGAACAAACTGAAGTGAA+AGG | - | chr7_3:82063999-82064018 | None:intergenic | 35.0% | |
| TTCAAGCAAACTGAAGTGAA+AGG | - | chr7_3:82064055-82064074 | None:intergenic | 35.0% | |
| ! | GACTTGATTTTGTACTGTAC+TGG | + | chr7_3:82064228-82064247 | Msa1130000:intron | 35.0% |
| !! | AAAGGTGTTGTTTCTGGTAT+TGG | + | chr7_3:82064346-82064365 | Msa1130000:intron | 35.0% |
| CTGCAGAACTACTAATGTAT+TGG | - | chr7_3:82064392-82064411 | None:intergenic | 35.0% | |
| GACTTTCTTGTATAGATGGT+TGG | - | chr7_3:82064437-82064456 | None:intergenic | 35.0% | |
| AGAACAAGAGATAACTTTGG+TGG | + | chr7_3:82064465-82064484 | Msa1130000:intron | 35.0% | |
| TTTCCAGATTGATGAGAATG+TGG | + | chr7_3:82064612-82064631 | Msa1130000:intron | 35.0% | |
| CCTTGAAGCGAATTATATTC+GGG | - | chr7_3:82064672-82064691 | None:intergenic | 35.0% | |
| GAATATAATTCGCTTCAAGG+AGG | + | chr7_3:82064672-82064691 | Msa1130000:CDS | 35.0% | |
| !! | TACTTCAATGGGGTTTTGAT+TGG | + | chr7_3:82064771-82064790 | Msa1130000:intron | 35.0% |
| AAATTGACTGCAATGACAGT+AGG | + | chr7_3:82065014-82065033 | Msa1130000:intron | 35.0% | |
| CAGTAGGTAATTCTTACCAT+AGG | + | chr7_3:82065030-82065049 | Msa1130000:intron | 35.0% | |
| GTATGTGTCCAATGAAATTG+TGG | + | chr7_3:82065327-82065346 | Msa1130000:intron | 35.0% | |
| GTGATCAACCACAATTTCAT+TGG | - | chr7_3:82065338-82065357 | None:intergenic | 35.0% | |
| !!! | AAGATGTTTTAGTGCTCTAG+TGG | - | chr7_3:82065428-82065447 | None:intergenic | 35.0% |
| !! | TGATAGTTCTAATAGAGTGG+AGG | + | chr7_3:82065636-82065655 | Msa1130000:CDS | 35.0% |
| !! | TTTCAGGAAAGCGTAGATTT+TGG | + | chr7_3:82065668-82065687 | Msa1130000:CDS | 35.0% |
| TAGCCACATTCTCATCAATC+TGG | - | chr7_3:82064618-82064637 | None:intergenic | 40.0% | |
| CTAGAGAGATTATCAACCAC+AGG | + | chr7_3:82064635-82064654 | Msa1130000:CDS | 40.0% | |
| TTATCAACCACAGGTCTCTT+CGG | + | chr7_3:82064644-82064663 | Msa1130000:CDS | 40.0% | |
| CCCGAATATAATTCGCTTCA+AGG | + | chr7_3:82064669-82064688 | Msa1130000:CDS | 40.0% | |
| TAATTCGCTTCAAGGAGGTA+AGG | + | chr7_3:82064677-82064696 | Msa1130000:intron | 40.0% | |
| !! | TTATACTGCAAGAAGGTGCT+AGG | - | chr7_3:82064857-82064876 | None:intergenic | 40.0% |
| ACTCTGCTTATACTGCAAGA+AGG | - | chr7_3:82064864-82064883 | None:intergenic | 40.0% | |
| ATGAGTCGTTGTATAGAGAC+TGG | - | chr7_3:82064992-82065011 | None:intergenic | 40.0% | |
| AGTGCAATTCGAGTATCATC+AGG | - | chr7_3:82065165-82065184 | None:intergenic | 40.0% | |
| ATTGTGGTTGATCACCTTCA+TGG | + | chr7_3:82065343-82065362 | Msa1130000:intron | 40.0% | |
| ATATTGCTTTGTCGCCATGA+AGG | - | chr7_3:82065360-82065379 | None:intergenic | 40.0% | |
| TCATGGCGACAAAGCAATAT+AGG | + | chr7_3:82065360-82065379 | Msa1130000:intron | 40.0% | |
| CATGGCGACAAAGCAATATA+GGG | + | chr7_3:82065361-82065380 | Msa1130000:intron | 40.0% | |
| GGTTAGGATGAATATTGCAG+TGG | + | chr7_3:82065399-82065418 | Msa1130000:intron | 40.0% | |
| ! | GCTGACTTTCATGCAAAAGT+AGG | + | chr7_3:82065490-82065509 | Msa1130000:CDS | 40.0% |
| GATCAAAGCCATATTCGAAC+AGG | + | chr7_3:82065544-82065563 | Msa1130000:CDS | 40.0% | |
| ATATTCGAACAGGTGCACAA+GGG | + | chr7_3:82065554-82065573 | Msa1130000:CDS | 40.0% | |
| CTAATAGAGTGGAGGCAATT+AGG | + | chr7_3:82065644-82065663 | Msa1130000:CDS | 40.0% | |
| !! | AGGAAAGCGTAGATTTTGGA+GGG | + | chr7_3:82065672-82065691 | Msa1130000:CDS | 40.0% |
| TAGCCACATTCTCATCAATC+TGG | - | chr7_3:82064618-82064637 | None:intergenic | 40.0% | |
| CTAGAGAGATTATCAACCAC+AGG | + | chr7_3:82064635-82064654 | Msa1130000:CDS | 40.0% | |
| TTATCAACCACAGGTCTCTT+CGG | + | chr7_3:82064644-82064663 | Msa1130000:CDS | 40.0% | |
| CCCGAATATAATTCGCTTCA+AGG | + | chr7_3:82064669-82064688 | Msa1130000:CDS | 40.0% | |
| TAATTCGCTTCAAGGAGGTA+AGG | + | chr7_3:82064677-82064696 | Msa1130000:intron | 40.0% | |
| !! | TTATACTGCAAGAAGGTGCT+AGG | - | chr7_3:82064857-82064876 | None:intergenic | 40.0% |
| ACTCTGCTTATACTGCAAGA+AGG | - | chr7_3:82064864-82064883 | None:intergenic | 40.0% | |
| ATGAGTCGTTGTATAGAGAC+TGG | - | chr7_3:82064992-82065011 | None:intergenic | 40.0% | |
| AGTGCAATTCGAGTATCATC+AGG | - | chr7_3:82065165-82065184 | None:intergenic | 40.0% | |
| ATTGTGGTTGATCACCTTCA+TGG | + | chr7_3:82065343-82065362 | Msa1130000:intron | 40.0% | |
| ATATTGCTTTGTCGCCATGA+AGG | - | chr7_3:82065360-82065379 | None:intergenic | 40.0% | |
| TCATGGCGACAAAGCAATAT+AGG | + | chr7_3:82065360-82065379 | Msa1130000:intron | 40.0% | |
| CATGGCGACAAAGCAATATA+GGG | + | chr7_3:82065361-82065380 | Msa1130000:intron | 40.0% | |
| GGTTAGGATGAATATTGCAG+TGG | + | chr7_3:82065399-82065418 | Msa1130000:intron | 40.0% | |
| ! | GCTGACTTTCATGCAAAAGT+AGG | + | chr7_3:82065490-82065509 | Msa1130000:CDS | 40.0% |
| GATCAAAGCCATATTCGAAC+AGG | + | chr7_3:82065544-82065563 | Msa1130000:CDS | 40.0% | |
| ATATTCGAACAGGTGCACAA+GGG | + | chr7_3:82065554-82065573 | Msa1130000:CDS | 40.0% | |
| CTAATAGAGTGGAGGCAATT+AGG | + | chr7_3:82065644-82065663 | Msa1130000:CDS | 40.0% | |
| !! | AGGAAAGCGTAGATTTTGGA+GGG | + | chr7_3:82065672-82065691 | Msa1130000:CDS | 40.0% |
| TGAGGTGTATGAGAGTTCAG+AGG | - | chr7_3:82063895-82063914 | None:intergenic | 45.0% | |
| !!! | CAATGGGGTTTTGATTGGTC+AGG | + | chr7_3:82064776-82064795 | Msa1130000:intron | 45.0% |
| ! | ACGACTCACATCAGGACTTT+TGG | - | chr7_3:82064969-82064988 | None:intergenic | 45.0% |
| CTTGTGCACCTGTTCGAATA+TGG | - | chr7_3:82065555-82065574 | None:intergenic | 45.0% | |
| CATATTCGAACAGGTGCACA+AGG | + | chr7_3:82065553-82065572 | Msa1130000:CDS | 45.0% | |
| ! | GTGGAGGCAATTAGGTTTTC+AGG | + | chr7_3:82065652-82065671 | Msa1130000:CDS | 45.0% |
| !! | CAGGAAAGCGTAGATTTTGG+AGG | + | chr7_3:82065671-82065690 | Msa1130000:CDS | 45.0% |
| TGAGGTGTATGAGAGTTCAG+AGG | - | chr7_3:82063895-82063914 | None:intergenic | 45.0% | |
| !!! | CAATGGGGTTTTGATTGGTC+AGG | + | chr7_3:82064776-82064795 | Msa1130000:intron | 45.0% |
| ! | ACGACTCACATCAGGACTTT+TGG | - | chr7_3:82064969-82064988 | None:intergenic | 45.0% |
| CTTGTGCACCTGTTCGAATA+TGG | - | chr7_3:82065555-82065574 | None:intergenic | 45.0% | |
| CATATTCGAACAGGTGCACA+AGG | + | chr7_3:82065553-82065572 | Msa1130000:CDS | 45.0% | |
| ! | GTGGAGGCAATTAGGTTTTC+AGG | + | chr7_3:82065652-82065671 | Msa1130000:CDS | 45.0% |
| !! | CAGGAAAGCGTAGATTTTGG+AGG | + | chr7_3:82065671-82065690 | Msa1130000:CDS | 45.0% |
| !!! | TGGGGTTTTGATTGGTCAGG+TGG | + | chr7_3:82064779-82064798 | Msa1130000:intron | 50.0% |
| !!! | TGGGGTTTTGATTGGTCAGG+TGG | + | chr7_3:82064779-82064798 | Msa1130000:intron | 50.0% |
| GAGACTGGACGACTCACATC+AGG | - | chr7_3:82064977-82064996 | None:intergenic | 55.0% | |
| TTACATGGGTGCACCTCACG+TGG | + | chr7_3:82065277-82065296 | Msa1130000:CDS | 55.0% | |
| GTAACTGCGACTTCCACGTG+AGG | - | chr7_3:82065293-82065312 | None:intergenic | 55.0% | |
| GAGACTGGACGACTCACATC+AGG | - | chr7_3:82064977-82064996 | None:intergenic | 55.0% | |
| TTACATGGGTGCACCTCACG+TGG | + | chr7_3:82065277-82065296 | Msa1130000:CDS | 55.0% | |
| GTAACTGCGACTTCCACGTG+AGG | - | chr7_3:82065293-82065312 | None:intergenic | 55.0% | |
| GCTGTCTGCTGCTGCCTCCA+CGG | - | chr7_3:82063861-82063880 | None:intergenic | 65.0% | |
| TGGAGGCAGCAGCAGACAGC+AGG | + | chr7_3:82063861-82063880 | Msa1130000:CDS | 65.0% | |
| GGCAGCAGCAGACAGCAGGA+CGG | + | chr7_3:82063865-82063884 | Msa1130000:CDS | 65.0% | |
| !! | TCGGGTGCCGAAGAGACCTG+TGG | - | chr7_3:82064654-82064673 | None:intergenic | 65.0% |
| GCTGTCTGCTGCTGCCTCCA+CGG | - | chr7_3:82063861-82063880 | None:intergenic | 65.0% | |
| TGGAGGCAGCAGCAGACAGC+AGG | + | chr7_3:82063861-82063880 | Msa1130000:CDS | 65.0% | |
| GGCAGCAGCAGACAGCAGGA+CGG | + | chr7_3:82063865-82063884 | Msa1130000:CDS | 65.0% | |
| !! | TCGGGTGCCGAAGAGACCTG+TGG | - | chr7_3:82064654-82064673 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 82063851 | 82065699 | 82063851 | ID=Msa1130000;Name=Msa1130000 |
| chr7_3 | mRNA | 82063851 | 82065699 | 82063851 | ID=Msa1130000-mRNA-1;Parent=Msa1130000;Name=Msa1130000-mRNA-1;_AED=0.54;_eAED=0.69;_QI=0|0|0|0.5|1|1|4|0|168 |
| chr7_3 | exon | 82063851 | 82063886 | 82063851 | ID=Msa1130000-mRNA-1:exon:24002;Parent=Msa1130000-mRNA-1 |
| chr7_3 | exon | 82064619 | 82064693 | 82064619 | ID=Msa1130000-mRNA-1:exon:24003;Parent=Msa1130000-mRNA-1 |
| chr7_3 | exon | 82065231 | 82065326 | 82065231 | ID=Msa1130000-mRNA-1:exon:24004;Parent=Msa1130000-mRNA-1 |
| chr7_3 | exon | 82065400 | 82065699 | 82065400 | ID=Msa1130000-mRNA-1:exon:24005;Parent=Msa1130000-mRNA-1 |
| chr7_3 | CDS | 82063851 | 82063886 | 82063851 | ID=Msa1130000-mRNA-1:cds;Parent=Msa1130000-mRNA-1 |
| chr7_3 | CDS | 82064619 | 82064693 | 82064619 | ID=Msa1130000-mRNA-1:cds;Parent=Msa1130000-mRNA-1 |
| chr7_3 | CDS | 82065231 | 82065326 | 82065231 | ID=Msa1130000-mRNA-1:cds;Parent=Msa1130000-mRNA-1 |
| chr7_3 | CDS | 82065400 | 82065699 | 82065400 | ID=Msa1130000-mRNA-1:cds;Parent=Msa1130000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
