Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130250 | RHN49520.1 | 88.936 | 235 | 20 | 2 | 1 | 229 | 1 | 235 | 7.69e-140 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130250 | sp|A2X1N2|ORR24_ORYSI | 57.627 | 236 | 89 | 3 | 3 | 229 | 23 | 256 | 5.01e-86 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130250 | A0A396H8C6 | 88.936 | 235 | 20 | 2 | 1 | 229 | 1 | 235 | 3.67e-140 | 403 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1130250 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130250 | MtrunA17_Chr7g0275401 | 88.936 | 235 | 20 | 2 | 1 | 229 | 1 | 235 | 7.07e-144 | 403 |
| Msa1130250 | MtrunA17_Chr1g0149841 | 77.253 | 233 | 48 | 1 | 1 | 228 | 1 | 233 | 1.24e-113 | 334 |
| Msa1130250 | MtrunA17_Chr7g0275891 | 71.255 | 247 | 51 | 4 | 1 | 228 | 1 | 246 | 4.71e-112 | 325 |
| Msa1130250 | MtrunA17_Chr1g0149851 | 69.355 | 248 | 56 | 2 | 1 | 228 | 1 | 248 | 2.59e-102 | 306 |
| Msa1130250 | MtrunA17_Chr3g0137101 | 59.916 | 237 | 84 | 3 | 2 | 228 | 5 | 240 | 1.22e-82 | 258 |
| Msa1130250 | MtrunA17_Chr1g0149831 | 74.118 | 170 | 36 | 2 | 64 | 228 | 1 | 167 | 1.70e-72 | 220 |
| Msa1130250 | MtrunA17_Chr2g0304841 | 52.282 | 241 | 101 | 4 | 3 | 229 | 16 | 256 | 2.91e-69 | 224 |
| Msa1130250 | MtrunA17_Chr1g0161431 | 48.133 | 241 | 105 | 3 | 2 | 228 | 8 | 242 | 6.53e-68 | 219 |
| Msa1130250 | MtrunA17_Chr4g0074411 | 50.661 | 227 | 110 | 1 | 5 | 229 | 18 | 244 | 2.75e-66 | 215 |
| Msa1130250 | MtrunA17_Chr2g0294911 | 48.485 | 231 | 114 | 2 | 1 | 228 | 25 | 253 | 3.13e-66 | 214 |
| Msa1130250 | MtrunA17_Chr4g0067981 | 49.130 | 230 | 114 | 2 | 2 | 228 | 28 | 257 | 6.42e-66 | 215 |
| Msa1130250 | MtrunA17_Chr4g0074401 | 48.707 | 232 | 114 | 1 | 3 | 229 | 15 | 246 | 7.18e-64 | 208 |
| Msa1130250 | MtrunA17_Chr3g0123131 | 47.436 | 234 | 110 | 2 | 4 | 228 | 12 | 241 | 7.31e-62 | 202 |
| Msa1130250 | MtrunA17_Chr8g0376881 | 48.739 | 238 | 101 | 4 | 3 | 228 | 23 | 251 | 5.11e-61 | 199 |
| Msa1130250 | MtrunA17_Chr3g0134461 | 48.684 | 228 | 69 | 2 | 2 | 228 | 5 | 185 | 1.22e-58 | 183 |
| Msa1130250 | MtrunA17_Chr4g0074421 | 50.000 | 174 | 87 | 0 | 55 | 228 | 2 | 175 | 5.63e-50 | 161 |
| Msa1130250 | MtrunA17_Chr3g0134481 | 64.341 | 129 | 46 | 0 | 1 | 129 | 4 | 132 | 1.38e-48 | 157 |
| Msa1130250 | MtrunA17_Chr4g0009851 | 36.444 | 225 | 120 | 4 | 5 | 229 | 11 | 212 | 1.45e-42 | 146 |
| Msa1130250 | MtrunA17_Chr4g0009901 | 35.965 | 228 | 123 | 4 | 2 | 229 | 7 | 211 | 3.50e-41 | 141 |
| Msa1130250 | MtrunA17_Chr6g0471041 | 34.802 | 227 | 123 | 5 | 4 | 229 | 13 | 215 | 2.07e-33 | 124 |
| Msa1130250 | MtrunA17_Chr4g0009981 | 35.000 | 180 | 95 | 3 | 50 | 229 | 2 | 159 | 4.23e-32 | 117 |
| Msa1130250 | MtrunA17_Chr8g0350761 | 30.328 | 244 | 145 | 7 | 8 | 228 | 20 | 261 | 2.67e-24 | 100 |
| Msa1130250 | MtrunA17_Chr4g0011071 | 31.646 | 158 | 86 | 3 | 52 | 209 | 36 | 171 | 8.66e-23 | 91.3 |
| Msa1130250 | MtrunA17_Chr6g0456631 | 36.434 | 129 | 79 | 2 | 1 | 127 | 5 | 132 | 2.49e-22 | 89.7 |
| Msa1130250 | MtrunA17_Chr8g0391911 | 30.417 | 240 | 140 | 7 | 5 | 229 | 9 | 236 | 1.34e-21 | 89.7 |
| Msa1130250 | MtrunA17_Chr8g0345901 | 30.723 | 166 | 104 | 2 | 6 | 160 | 33 | 198 | 6.52e-21 | 90.9 |
| Msa1130250 | MtrunA17_Chr8g0383961 | 35.484 | 124 | 80 | 0 | 4 | 127 | 13 | 136 | 1.57e-20 | 87.0 |
| Msa1130250 | MtrunA17_Chr3g0127941 | 31.250 | 144 | 94 | 2 | 9 | 148 | 56 | 198 | 7.50e-20 | 87.8 |
| Msa1130250 | MtrunA17_Chr3g0091641 | 29.319 | 191 | 117 | 3 | 1 | 173 | 14 | 204 | 3.98e-19 | 85.5 |
| Msa1130250 | MtrunA17_Chr4g0009991 | 36.090 | 133 | 62 | 4 | 97 | 229 | 1 | 110 | 1.46e-18 | 78.6 |
| Msa1130250 | MtrunA17_Chr4g0061021 | 32.031 | 128 | 84 | 1 | 6 | 130 | 30 | 157 | 1.34e-17 | 81.3 |
| Msa1130250 | MtrunA17_Chr5g0423031 | 37.624 | 101 | 58 | 2 | 2 | 102 | 7 | 102 | 7.59e-17 | 75.5 |
| Msa1130250 | MtrunA17_Chr1g0181811 | 30.539 | 167 | 106 | 3 | 9 | 172 | 85 | 244 | 1.44e-16 | 78.2 |
| Msa1130250 | MtrunA17_Chr7g0276361 | 29.714 | 175 | 109 | 4 | 9 | 173 | 14 | 184 | 3.47e-16 | 77.0 |
| Msa1130250 | MtrunA17_Chr4g0030271 | 35.246 | 122 | 76 | 1 | 9 | 127 | 89 | 210 | 4.47e-15 | 73.9 |
| Msa1130250 | MtrunA17_Chr4g0059571 | 32.308 | 130 | 76 | 2 | 9 | 126 | 26 | 155 | 3.17e-13 | 66.2 |
| Msa1130250 | MtrunA17_Chr6g0473731 | 29.861 | 144 | 85 | 3 | 85 | 228 | 10 | 137 | 4.73e-13 | 67.8 |
| Msa1130250 | MtrunA17_Chr8g0352871 | 29.286 | 140 | 79 | 3 | 9 | 128 | 9 | 148 | 4.26e-12 | 62.4 |
| Msa1130250 | MtrunA17_Chr7g0256551 | 27.273 | 165 | 98 | 3 | 9 | 152 | 9 | 172 | 1.07e-11 | 62.4 |
| Msa1130250 | MtrunA17_Chr5g0400241 | 33.333 | 126 | 78 | 3 | 4 | 127 | 13 | 134 | 1.21e-11 | 63.5 |
| Msa1130250 | MtrunA17_Chr4g0054981 | 31.200 | 125 | 82 | 2 | 4 | 127 | 13 | 134 | 3.05e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130250 | AT4G31920.1 | 60.619 | 226 | 78 | 2 | 3 | 228 | 11 | 225 | 8.02e-83 | 257 |
| Msa1130250 | AT2G25180.1 | 57.391 | 230 | 91 | 3 | 3 | 228 | 11 | 237 | 2.91e-77 | 244 |
| Msa1130250 | AT3G16857.1 | 46.484 | 256 | 96 | 3 | 5 | 228 | 33 | 279 | 3.11e-66 | 216 |
| Msa1130250 | AT3G16857.2 | 46.304 | 257 | 97 | 3 | 5 | 229 | 33 | 280 | 1.09e-64 | 213 |
| Msa1130250 | AT5G58080.1 | 50.420 | 238 | 95 | 5 | 3 | 229 | 12 | 237 | 8.41e-62 | 204 |
| Msa1130250 | AT2G01760.1 | 45.417 | 240 | 119 | 3 | 1 | 228 | 3 | 242 | 8.40e-61 | 195 |
| Msa1130250 | AT1G67710.1 | 48.276 | 232 | 108 | 3 | 7 | 229 | 9 | 237 | 8.61e-60 | 196 |
| Msa1130250 | AT2G01760.2 | 40.672 | 268 | 119 | 4 | 1 | 228 | 3 | 270 | 1.07e-54 | 180 |
| Msa1130250 | AT3G16857.3 | 45.413 | 218 | 78 | 3 | 43 | 228 | 1 | 209 | 7.23e-52 | 177 |
| Msa1130250 | AT5G49240.1 | 36.123 | 227 | 137 | 4 | 8 | 228 | 41 | 265 | 1.19e-40 | 140 |
| Msa1130250 | AT3G62670.1 | 38.889 | 216 | 108 | 8 | 24 | 227 | 54 | 257 | 3.27e-37 | 135 |
| Msa1130250 | AT1G67710.2 | 46.552 | 174 | 81 | 3 | 64 | 228 | 1 | 171 | 7.76e-36 | 132 |
| Msa1130250 | AT2G01760.3 | 42.373 | 177 | 90 | 3 | 64 | 228 | 1 | 177 | 6.63e-35 | 126 |
| Msa1130250 | AT1G49190.1 | 28.627 | 255 | 134 | 5 | 3 | 229 | 28 | 262 | 5.00e-30 | 115 |
| Msa1130250 | AT1G49190.2 | 29.614 | 233 | 136 | 6 | 3 | 207 | 28 | 260 | 1.51e-23 | 99.0 |
| Msa1130250 | AT5G07210.2 | 27.778 | 252 | 149 | 6 | 9 | 229 | 16 | 265 | 2.95e-23 | 97.8 |
| Msa1130250 | AT2G46790.1 | 37.398 | 123 | 72 | 2 | 9 | 127 | 37 | 158 | 5.65e-22 | 94.0 |
| Msa1130250 | AT2G46790.3 | 37.398 | 123 | 72 | 2 | 9 | 127 | 37 | 158 | 5.66e-22 | 93.6 |
| Msa1130250 | AT1G67710.3 | 39.610 | 154 | 81 | 3 | 84 | 228 | 12 | 162 | 1.04e-21 | 93.2 |
| Msa1130250 | AT2G27070.1 | 27.451 | 255 | 149 | 5 | 9 | 229 | 16 | 268 | 1.29e-21 | 93.2 |
| Msa1130250 | AT5G07210.1 | 26.923 | 260 | 149 | 7 | 9 | 229 | 16 | 273 | 8.89e-21 | 90.9 |
| Msa1130250 | AT5G24470.1 | 34.646 | 127 | 78 | 2 | 6 | 128 | 47 | 172 | 1.23e-20 | 90.5 |
| Msa1130250 | AT5G61380.1 | 34.959 | 123 | 77 | 1 | 11 | 130 | 21 | 143 | 1.17e-19 | 87.4 |
| Msa1130250 | AT5G60100.7 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 7.19e-19 | 84.7 |
| Msa1130250 | AT5G60100.6 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 7.19e-19 | 84.7 |
| Msa1130250 | AT5G60100.4 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 7.19e-19 | 84.7 |
| Msa1130250 | AT5G60100.5 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 8.25e-19 | 85.1 |
| Msa1130250 | AT5G60100.3 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 8.25e-19 | 85.1 |
| Msa1130250 | AT5G60100.1 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 8.25e-19 | 85.1 |
| Msa1130250 | AT5G60100.2 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 1.04e-18 | 84.7 |
| Msa1130250 | AT5G02810.1 | 35.246 | 122 | 76 | 1 | 9 | 127 | 78 | 199 | 1.06e-17 | 82.0 |
| Msa1130250 | AT3G57040.2 | 28.873 | 142 | 79 | 3 | 9 | 128 | 9 | 150 | 2.60e-11 | 61.6 |
| Msa1130250 | AT3G57040.1 | 28.873 | 142 | 79 | 3 | 9 | 128 | 9 | 150 | 2.60e-11 | 61.6 |
| Msa1130250 | AT5G62920.1 | 34.559 | 136 | 75 | 5 | 9 | 131 | 25 | 159 | 5.38e-11 | 60.1 |
Find 31 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAACTTGTCTCAAGATTT+TGG | 0.120883 | 7_3:-82368045 | Msa1130250:CDS |
| CTTGTCGCGGTTAACAAATT+TGG | 0.304801 | 7_3:-82366868 | Msa1130250:CDS |
| CCATTTCCACTATCAGAATT+AGG | 0.317534 | 7_3:+82367066 | None:intergenic |
| TGAAAGAGGTGAAGATGATT+TGG | 0.332494 | 7_3:-82367140 | Msa1130250:CDS |
| ATGAATGATGAGTTTCGAAT+TGG | 0.346923 | 7_3:-82368095 | Msa1130250:CDS |
| TTCACCTCTTTCAATTGAAC+AGG | 0.352913 | 7_3:+82367150 | None:intergenic |
| TGAGCTTGTTGGACTTGAAA+TGG | 0.372169 | 7_3:-82367348 | Msa1130250:CDS |
| TTTAAGCTTCTTGAGCTTGT+TGG | 0.375182 | 7_3:-82367359 | Msa1130250:CDS |
| CAACGAAATCGAGGCTTCTT+CGG | 0.398280 | 7_3:+82366916 | None:intergenic |
| CGAGGCTTCTTCGGCGCTGT+TGG | 0.409792 | 7_3:+82366925 | None:intergenic |
| ATTGCTTTCATAACCAGCTT+AGG | 0.420417 | 7_3:+82367204 | None:intergenic |
| AAACTTGTGGTGTAAGTCAT+TGG | 0.441523 | 7_3:+82366891 | None:intergenic |
| TTCAGTGCTATTCGTGCACT+TGG | 0.445352 | 7_3:+82367452 | None:intergenic |
| TATGAACATTACTCATTACT+AGG | 0.460796 | 7_3:+82367399 | None:intergenic |
| AGCTTAAATCCATCCATGTC+TGG | 0.471845 | 7_3:+82367374 | None:intergenic |
| TGAAAATGATGATCCTAAGC+TGG | 0.496842 | 7_3:-82367217 | Msa1130250:CDS |
| TTGCATAACTTACTTATGAC+AGG | 0.526242 | 7_3:+82367320 | None:intergenic |
| TAAGAATGAAGATGATGTTG+AGG | 0.533063 | 7_3:-82366980 | Msa1130250:CDS |
| CGAAGAAGCCTCGATTTCGT+TGG | 0.556982 | 7_3:-82366915 | Msa1130250:CDS |
| TATTCGTGCACTTGGAGCAG+TGG | 0.566879 | 7_3:+82367460 | None:intergenic |
| GTTCATATGCCAGACATGGA+TGG | 0.584384 | 7_3:-82367383 | Msa1130250:CDS |
| GAAACCTGTTCAATTGAAAG+AGG | 0.592307 | 7_3:-82367154 | Msa1130250:CDS |
| GTTATGAAAGCAATTGATCT+CGG | 0.596446 | 7_3:-82367195 | Msa1130250:CDS |
| GAGTATGATCATGAAAATGA+TGG | 0.597211 | 7_3:-82366949 | Msa1130250:CDS |
| ATAACTTACTTATGACAGGT+AGG | 0.629417 | 7_3:+82367324 | None:intergenic |
| GAATGTTGAAAATCTTACAA+AGG | 0.637383 | 7_3:-82366555 | Msa1130250:CDS |
| ACACCACAAGTTTCTTGTCG+CGG | 0.645407 | 7_3:-82366881 | Msa1130250:CDS |
| CTCGAAAGGTGTCAATACCA+TGG | 0.650196 | 7_3:-82368014 | Msa1130250:intron |
| TCATTGGACCAACGAAATCG+AGG | 0.660616 | 7_3:+82366907 | None:intergenic |
| TAATGTTCATATGCCAGACA+TGG | 0.666265 | 7_3:-82367387 | Msa1130250:CDS |
| TAACCGCGACAAGAAACTTG+TGG | 0.669528 | 7_3:+82366878 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATATCATTATGAA+AGG | + | chr7_3:82367141-82367160 | None:intergenic | 10.0% |
| !! | ATAATATTAATATCATCATT+GGG | + | chr7_3:82367923-82367942 | None:intergenic | 10.0% |
| !! | AAAATTAATATCATTATGAA+AGG | + | chr7_3:82367141-82367160 | None:intergenic | 10.0% |
| !! | ATAATATTAATATCATCATT+GGG | + | chr7_3:82367923-82367942 | None:intergenic | 10.0% |
| !! | ATCATTAAATTGTAATCATA+AGG | - | chr7_3:82366717-82366736 | Msa1130250:intron | 15.0% |
| !! | TCATTAAATTGTAATCATAA+GGG | - | chr7_3:82366718-82366737 | Msa1130250:intron | 15.0% |
| !! | CATAATATTAATATCATCAT+TGG | + | chr7_3:82367924-82367943 | None:intergenic | 15.0% |
| !! | ATCATTAAATTGTAATCATA+AGG | - | chr7_3:82366717-82366736 | Msa1130250:intron | 15.0% |
| !! | TCATTAAATTGTAATCATAA+GGG | - | chr7_3:82366718-82366737 | Msa1130250:intron | 15.0% |
| !! | CATAATATTAATATCATCAT+TGG | + | chr7_3:82367924-82367943 | None:intergenic | 15.0% |
| !!! | TAATATAATTGATTCGTACA+AGG | + | chr7_3:82366897-82366916 | None:intergenic | 20.0% |
| !!! | TGTGAACTTATGTTATTTTT+TGG | - | chr7_3:82367044-82367063 | Msa1130250:intron | 20.0% |
| !!! | TAATATAATTGATTCGTACA+AGG | + | chr7_3:82366897-82366916 | None:intergenic | 20.0% |
| !!! | TGTGAACTTATGTTATTTTT+TGG | - | chr7_3:82367044-82367063 | Msa1130250:intron | 20.0% |
| ! | TAAATTGTAATCATAAGGGA+CGG | - | chr7_3:82366722-82366741 | Msa1130250:intron | 25.0% |
| ! | AATTAGAACGATAACGTTAA+CGG | - | chr7_3:82366830-82366849 | Msa1130250:intron | 25.0% |
| !! | AATCTTTGAGAGAATTTGAT+CGG | + | chr7_3:82366973-82366992 | None:intergenic | 25.0% |
| ! | TATGAACATTACTCATTACT+AGG | + | chr7_3:82367249-82367268 | None:intergenic | 25.0% |
| ! | ATGTATCAGTAACAAAAGAT+TGG | + | chr7_3:82367355-82367374 | None:intergenic | 25.0% |
| !! | TTATCCTTTCTTTTTCTAGA+TGG | + | chr7_3:82367648-82367667 | None:intergenic | 25.0% |
| ! | AGCAATAGATAAAAGATTTG+AGG | + | chr7_3:82367852-82367871 | None:intergenic | 25.0% |
| ! | TTTATCAAAGATGTTTGAGT+AGG | - | chr7_3:82367887-82367906 | Msa1130250:intron | 25.0% |
| !! | ATCAAGTTAAGAATCTTTTG+TGG | + | chr7_3:82368070-82368089 | None:intergenic | 25.0% |
| ! | GAATGTTGAAAATCTTACAA+AGG | - | chr7_3:82368090-82368109 | Msa1130250:CDS | 25.0% |
| ! | TAAATTGTAATCATAAGGGA+CGG | - | chr7_3:82366722-82366741 | Msa1130250:intron | 25.0% |
| ! | AATTAGAACGATAACGTTAA+CGG | - | chr7_3:82366830-82366849 | Msa1130250:intron | 25.0% |
| !! | AATCTTTGAGAGAATTTGAT+CGG | + | chr7_3:82366973-82366992 | None:intergenic | 25.0% |
| ! | TATGAACATTACTCATTACT+AGG | + | chr7_3:82367249-82367268 | None:intergenic | 25.0% |
| ! | ATGTATCAGTAACAAAAGAT+TGG | + | chr7_3:82367355-82367374 | None:intergenic | 25.0% |
| !! | TTATCCTTTCTTTTTCTAGA+TGG | + | chr7_3:82367648-82367667 | None:intergenic | 25.0% |
| ! | AGCAATAGATAAAAGATTTG+AGG | + | chr7_3:82367852-82367871 | None:intergenic | 25.0% |
| ! | TTTATCAAAGATGTTTGAGT+AGG | - | chr7_3:82367887-82367906 | Msa1130250:intron | 25.0% |
| !! | ATCAAGTTAAGAATCTTTTG+TGG | + | chr7_3:82368070-82368089 | None:intergenic | 25.0% |
| ! | GAATGTTGAAAATCTTACAA+AGG | - | chr7_3:82368090-82368109 | Msa1130250:CDS | 25.0% |
| ATGAATGATGAGTTTCGAAT+TGG | - | chr7_3:82366550-82366569 | Msa1130250:CDS | 30.0% | |
| ! | AAAGAAAAAGAAGCATACCA+TGG | + | chr7_3:82366651-82366670 | None:intergenic | 30.0% |
| ! | CACTTCTAATCTAAGGTTAT+CGG | + | chr7_3:82366753-82366772 | None:intergenic | 30.0% |
| GATCAAATTCTCTCAAAGAT+TGG | - | chr7_3:82366972-82366991 | Msa1130250:CDS | 30.0% | |
| TTTAACTGCATCCAAATTGT+TGG | - | chr7_3:82367077-82367096 | Msa1130250:CDS | 30.0% | |
| ATCGAATGAATCCAACAATT+TGG | + | chr7_3:82367091-82367110 | None:intergenic | 30.0% | |
| ATAACTTACTTATGACAGGT+AGG | + | chr7_3:82367324-82367343 | None:intergenic | 30.0% | |
| TTGCATAACTTACTTATGAC+AGG | + | chr7_3:82367328-82367347 | None:intergenic | 30.0% | |
| GTTATGAAAGCAATTGATCT+CGG | - | chr7_3:82367450-82367469 | Msa1130250:CDS | 30.0% | |
| AAAGCCATCTAGAAAAAGAA+AGG | - | chr7_3:82367641-82367660 | Msa1130250:intron | 30.0% | |
| TAAGAATGAAGATGATGTTG+AGG | - | chr7_3:82367665-82367684 | Msa1130250:intron | 30.0% | |
| GAGTATGATCATGAAAATGA+TGG | - | chr7_3:82367696-82367715 | Msa1130250:intron | 30.0% | |
| !!! | AGTTGTTATTTTGTTTGCAG+AGG | - | chr7_3:82368039-82368058 | Msa1130250:CDS | 30.0% |
| ATGAATGATGAGTTTCGAAT+TGG | - | chr7_3:82366550-82366569 | Msa1130250:CDS | 30.0% | |
| ! | AAAGAAAAAGAAGCATACCA+TGG | + | chr7_3:82366651-82366670 | None:intergenic | 30.0% |
| ! | CACTTCTAATCTAAGGTTAT+CGG | + | chr7_3:82366753-82366772 | None:intergenic | 30.0% |
| GATCAAATTCTCTCAAAGAT+TGG | - | chr7_3:82366972-82366991 | Msa1130250:CDS | 30.0% | |
| TTTAACTGCATCCAAATTGT+TGG | - | chr7_3:82367077-82367096 | Msa1130250:CDS | 30.0% | |
| ATCGAATGAATCCAACAATT+TGG | + | chr7_3:82367091-82367110 | None:intergenic | 30.0% | |
| ATAACTTACTTATGACAGGT+AGG | + | chr7_3:82367324-82367343 | None:intergenic | 30.0% | |
| TTGCATAACTTACTTATGAC+AGG | + | chr7_3:82367328-82367347 | None:intergenic | 30.0% | |
| GTTATGAAAGCAATTGATCT+CGG | - | chr7_3:82367450-82367469 | Msa1130250:CDS | 30.0% | |
| AAAGCCATCTAGAAAAAGAA+AGG | - | chr7_3:82367641-82367660 | Msa1130250:intron | 30.0% | |
| TAAGAATGAAGATGATGTTG+AGG | - | chr7_3:82367665-82367684 | Msa1130250:intron | 30.0% | |
| GAGTATGATCATGAAAATGA+TGG | - | chr7_3:82367696-82367715 | Msa1130250:intron | 30.0% | |
| !!! | AGTTGTTATTTTGTTTGCAG+AGG | - | chr7_3:82368039-82368058 | Msa1130250:CDS | 30.0% |
| ! | CAGAACTTGTCTCAAGATTT+TGG | - | chr7_3:82366600-82366619 | Msa1130250:intron | 35.0% |
| ! | TCTTTAGATCCTTTTCGCTA+AGG | - | chr7_3:82366801-82366820 | Msa1130250:intron | 35.0% |
| ATTACAATGCCTTAGCGAAA+AGG | + | chr7_3:82366813-82366832 | None:intergenic | 35.0% | |
| TAATGTTCATATGCCAGACA+TGG | - | chr7_3:82367258-82367277 | Msa1130250:intron | 35.0% | |
| TTTAAGCTTCTTGAGCTTGT+TGG | - | chr7_3:82367286-82367305 | Msa1130250:intron | 35.0% | |
| TGAAAATGATGATCCTAAGC+TGG | - | chr7_3:82367428-82367447 | Msa1130250:CDS | 35.0% | |
| ATTGCTTTCATAACCAGCTT+AGG | + | chr7_3:82367444-82367463 | None:intergenic | 35.0% | |
| GAAACCTGTTCAATTGAAAG+AGG | - | chr7_3:82367491-82367510 | Msa1130250:intron | 35.0% | |
| TTCACCTCTTTCAATTGAAC+AGG | + | chr7_3:82367498-82367517 | None:intergenic | 35.0% | |
| TGAAAGAGGTGAAGATGATT+TGG | - | chr7_3:82367505-82367524 | Msa1130250:intron | 35.0% | |
| CCATTTCCACTATCAGAATT+AGG | + | chr7_3:82367582-82367601 | None:intergenic | 35.0% | |
| !! | CCTAATTCTGATAGTGGAAA+TGG | - | chr7_3:82367579-82367598 | Msa1130250:intron | 35.0% |
| AAACTTGTGGTGTAAGTCAT+TGG | + | chr7_3:82367757-82367776 | None:intergenic | 35.0% | |
| ! | TTTTGCACATTGAAAGCAGA+GGG | + | chr7_3:82367821-82367840 | None:intergenic | 35.0% |
| ! | TTTTTGCACATTGAAAGCAG+AGG | + | chr7_3:82367822-82367841 | None:intergenic | 35.0% |
| !! | TTATTTTGTTTGCAGAGGCT+AGG | - | chr7_3:82368044-82368063 | Msa1130250:CDS | 35.0% |
| ! | CAGAACTTGTCTCAAGATTT+TGG | - | chr7_3:82366600-82366619 | Msa1130250:intron | 35.0% |
| ! | TCTTTAGATCCTTTTCGCTA+AGG | - | chr7_3:82366801-82366820 | Msa1130250:intron | 35.0% |
| ATTACAATGCCTTAGCGAAA+AGG | + | chr7_3:82366813-82366832 | None:intergenic | 35.0% | |
| TAATGTTCATATGCCAGACA+TGG | - | chr7_3:82367258-82367277 | Msa1130250:intron | 35.0% | |
| TTTAAGCTTCTTGAGCTTGT+TGG | - | chr7_3:82367286-82367305 | Msa1130250:intron | 35.0% | |
| TGAAAATGATGATCCTAAGC+TGG | - | chr7_3:82367428-82367447 | Msa1130250:CDS | 35.0% | |
| ATTGCTTTCATAACCAGCTT+AGG | + | chr7_3:82367444-82367463 | None:intergenic | 35.0% | |
| GAAACCTGTTCAATTGAAAG+AGG | - | chr7_3:82367491-82367510 | Msa1130250:intron | 35.0% | |
| TTCACCTCTTTCAATTGAAC+AGG | + | chr7_3:82367498-82367517 | None:intergenic | 35.0% | |
| TGAAAGAGGTGAAGATGATT+TGG | - | chr7_3:82367505-82367524 | Msa1130250:intron | 35.0% | |
| CCATTTCCACTATCAGAATT+AGG | + | chr7_3:82367582-82367601 | None:intergenic | 35.0% | |
| !! | CCTAATTCTGATAGTGGAAA+TGG | - | chr7_3:82367579-82367598 | Msa1130250:intron | 35.0% |
| AAACTTGTGGTGTAAGTCAT+TGG | + | chr7_3:82367757-82367776 | None:intergenic | 35.0% | |
| ! | TTTTGCACATTGAAAGCAGA+GGG | + | chr7_3:82367821-82367840 | None:intergenic | 35.0% |
| ! | TTTTTGCACATTGAAAGCAG+AGG | + | chr7_3:82367822-82367841 | None:intergenic | 35.0% |
| !! | TTATTTTGTTTGCAGAGGCT+AGG | - | chr7_3:82368044-82368063 | Msa1130250:CDS | 35.0% |
| !! | TTTTGGAGAGACTTCTCGAA+AGG | - | chr7_3:82366617-82366636 | Msa1130250:intron | 40.0% |
| TTGTTGGATTCATTCGATGC+AGG | - | chr7_3:82367093-82367112 | Msa1130250:CDS | 40.0% | |
| AGCTTAAATCCATCCATGTC+TGG | + | chr7_3:82367274-82367293 | None:intergenic | 40.0% | |
| !! | TGAGCTTGTTGGACTTGAAA+TGG | - | chr7_3:82367297-82367316 | Msa1130250:intron | 40.0% |
| GATGTGCCTAATTCTGATAG+TGG | - | chr7_3:82367573-82367592 | Msa1130250:intron | 40.0% | |
| CTTGTCGCGGTTAACAAATT+TGG | - | chr7_3:82367777-82367796 | Msa1130250:intron | 40.0% | |
| !! | CGTCATAGCAAGAGTATTTG+AGG | + | chr7_3:82367988-82368007 | None:intergenic | 40.0% |
| !! | TTTTGGAGAGACTTCTCGAA+AGG | - | chr7_3:82366617-82366636 | Msa1130250:intron | 40.0% |
| TTGTTGGATTCATTCGATGC+AGG | - | chr7_3:82367093-82367112 | Msa1130250:CDS | 40.0% | |
| AGCTTAAATCCATCCATGTC+TGG | + | chr7_3:82367274-82367293 | None:intergenic | 40.0% | |
| !! | TGAGCTTGTTGGACTTGAAA+TGG | - | chr7_3:82367297-82367316 | Msa1130250:intron | 40.0% |
| GATGTGCCTAATTCTGATAG+TGG | - | chr7_3:82367573-82367592 | Msa1130250:intron | 40.0% | |
| CTTGTCGCGGTTAACAAATT+TGG | - | chr7_3:82367777-82367796 | Msa1130250:intron | 40.0% | |
| !! | CGTCATAGCAAGAGTATTTG+AGG | + | chr7_3:82367988-82368007 | None:intergenic | 40.0% |
| !! | CTCGAAAGGTGTCAATACCA+TGG | - | chr7_3:82366631-82366650 | Msa1130250:intron | 45.0% |
| GCAGCGACACTTCTAATCTA+AGG | + | chr7_3:82366760-82366779 | None:intergenic | 45.0% | |
| ! | TTCAGTGCTATTCGTGCACT+TGG | + | chr7_3:82367196-82367215 | None:intergenic | 45.0% |
| GTTCATATGCCAGACATGGA+TGG | - | chr7_3:82367262-82367281 | Msa1130250:intron | 45.0% | |
| CAACGAAATCGAGGCTTCTT+CGG | + | chr7_3:82367732-82367751 | None:intergenic | 45.0% | |
| TCATTGGACCAACGAAATCG+AGG | + | chr7_3:82367741-82367760 | None:intergenic | 45.0% | |
| ACACCACAAGTTTCTTGTCG+CGG | - | chr7_3:82367764-82367783 | Msa1130250:intron | 45.0% | |
| TAACCGCGACAAGAAACTTG+TGG | + | chr7_3:82367770-82367789 | None:intergenic | 45.0% | |
| !! | CTCGAAAGGTGTCAATACCA+TGG | - | chr7_3:82366631-82366650 | Msa1130250:intron | 45.0% |
| GCAGCGACACTTCTAATCTA+AGG | + | chr7_3:82366760-82366779 | None:intergenic | 45.0% | |
| ! | TTCAGTGCTATTCGTGCACT+TGG | + | chr7_3:82367196-82367215 | None:intergenic | 45.0% |
| GTTCATATGCCAGACATGGA+TGG | - | chr7_3:82367262-82367281 | Msa1130250:intron | 45.0% | |
| CAACGAAATCGAGGCTTCTT+CGG | + | chr7_3:82367732-82367751 | None:intergenic | 45.0% | |
| TCATTGGACCAACGAAATCG+AGG | + | chr7_3:82367741-82367760 | None:intergenic | 45.0% | |
| ACACCACAAGTTTCTTGTCG+CGG | - | chr7_3:82367764-82367783 | Msa1130250:intron | 45.0% | |
| TAACCGCGACAAGAAACTTG+TGG | + | chr7_3:82367770-82367789 | None:intergenic | 45.0% | |
| TATTCGTGCACTTGGAGCAG+TGG | + | chr7_3:82367188-82367207 | None:intergenic | 50.0% | |
| CGAAGAAGCCTCGATTTCGT+TGG | - | chr7_3:82367730-82367749 | Msa1130250:intron | 50.0% | |
| TATTCGTGCACTTGGAGCAG+TGG | + | chr7_3:82367188-82367207 | None:intergenic | 50.0% | |
| CGAAGAAGCCTCGATTTCGT+TGG | - | chr7_3:82367730-82367749 | Msa1130250:intron | 50.0% | |
| CGAGGCTTCTTCGGCGCTGT+TGG | + | chr7_3:82367723-82367742 | None:intergenic | 65.0% | |
| CGAGGCTTCTTCGGCGCTGT+TGG | + | chr7_3:82367723-82367742 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 82366550 | 82368117 | 82366550 | ID=Msa1130250;Name=Msa1130250 |
| chr7_3 | mRNA | 82366550 | 82368117 | 82366550 | ID=Msa1130250-mRNA-1;Parent=Msa1130250;Name=Msa1130250-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|0|0|1|0.75|0.6|5|0|229 |
| chr7_3 | exon | 82368015 | 82368117 | 82368015 | ID=Msa1130250-mRNA-1:exon:24245;Parent=Msa1130250-mRNA-1 |
| chr7_3 | exon | 82367333 | 82367485 | 82367333 | ID=Msa1130250-mRNA-1:exon:24244;Parent=Msa1130250-mRNA-1 |
| chr7_3 | exon | 82367076 | 82367246 | 82367076 | ID=Msa1130250-mRNA-1:exon:24243;Parent=Msa1130250-mRNA-1 |
| chr7_3 | exon | 82366860 | 82367060 | 82366860 | ID=Msa1130250-mRNA-1:exon:24242;Parent=Msa1130250-mRNA-1 |
| chr7_3 | exon | 82366550 | 82366608 | 82366550 | ID=Msa1130250-mRNA-1:exon:24241;Parent=Msa1130250-mRNA-1 |
| chr7_3 | CDS | 82368015 | 82368117 | 82368015 | ID=Msa1130250-mRNA-1:cds;Parent=Msa1130250-mRNA-1 |
| chr7_3 | CDS | 82367333 | 82367485 | 82367333 | ID=Msa1130250-mRNA-1:cds;Parent=Msa1130250-mRNA-1 |
| chr7_3 | CDS | 82367076 | 82367246 | 82367076 | ID=Msa1130250-mRNA-1:cds;Parent=Msa1130250-mRNA-1 |
| chr7_3 | CDS | 82366860 | 82367060 | 82366860 | ID=Msa1130250-mRNA-1:cds;Parent=Msa1130250-mRNA-1 |
| chr7_3 | CDS | 82366550 | 82366608 | 82366550 | ID=Msa1130250-mRNA-1:cds;Parent=Msa1130250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
