AlfalfaGEDB | Msa1131100

M. sativa cultivar zhongmu-4 / Msa1131100

KEGG: -
GO: GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006333 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031491 GO:0034728 GO:0035327 GO:0042623 GO:0042766 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044877 GO:0051276 GO:0070615 GO:0071824 GO:0071840 GO:0097159 GO:1901363
PFAM: PF16135.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1131100	XP_039689701.1	83.748	523	47	2	65	554	3	520	0.0	904

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1131100	sp\|F4IXE7\|IDM1_ARATH	32.697	419	244	14	143	537	619	1023	1.78e-57	211

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1131100	A0A072UPL4	82.792	523	47	3	65	554	3	515	0.0	888

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TFs/TRs:

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Gene ID	Type	Classification
Msa1131100	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1131100	MtrunA17_Chr4g0055731	77.247	523	47	4	65	554	3	486	0.0	813
Msa1131100	MtrunA17_Chr1g0205451	33.705	448	250	14	142	554	603	1038	6.48e-66	233
Msa1131100	MtrunA17_Chr1g0185491	32.783	424	245	11	142	537	809	1220	5.68e-62	221
Msa1131100	MtrunA17_Chr2g0316251	30.588	425	257	13	139	537	754	1166	2.37e-53	196
Msa1131100	MtrunA17_Chr5g0430361	28.289	456	281	17	111	537	619	1057	1.04e-47	179
Msa1131100	MtrunA17_Chr3g0105291	26.667	450	283	15	122	544	585	1014	1.50e-45	172
Msa1131100	MtrunA17_Chr7g0270101	28.894	398	233	11	144	510	383	761	7.39e-42	160
Msa1131100	MtrunA17_Chr5g0407251	26.932	427	268	11	145	537	3	419	4.06e-40	150
Msa1131100	MtrunA17_Chr5g0407211	26.698	427	269	11	145	537	3	419	2.98e-39	148
Msa1131100	MtrunA17_Chr3g0134821	23.368	475	298	14	105	537	382	832	5.09e-32	131

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1131100	AT4G14920.3	35.154	421	236	11	142	538	577	984	7.97e-69	241
Msa1131100	AT4G14920.2	35.154	421	236	11	142	538	577	984	8.01e-69	241
Msa1131100	AT4G14920.1	35.154	421	236	11	142	538	577	984	8.01e-69	241
Msa1131100	AT5G36740.5	33.787	441	257	11	124	538	519	950	1.17e-67	238
Msa1131100	AT5G36740.1	33.787	441	257	11	124	538	519	950	1.17e-67	238
Msa1131100	AT1G05380.3	33.256	430	242	12	142	542	517	930	4.84e-67	236
Msa1131100	AT1G05380.1	33.256	430	242	12	142	542	517	930	4.84e-67	236
Msa1131100	AT1G05380.2	33.256	430	242	12	142	542	517	930	4.84e-67	236
Msa1131100	AT5G36740.4	33.879	428	243	11	142	538	389	807	5.36e-67	235
Msa1131100	AT3G14980.5	32.697	419	244	14	143	537	574	978	1.56e-58	211

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Find 119 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCCTGATTAGTAAA+TGG	0.312020	7_3:-83519445	Msa1131100:CDS
AAACAAACAATGTCATGTAT+GGG	0.563802	7_3:+83519377	None:intergenic
AAACTCCAAGCGCAACAGCG+GGG	0.743032	7_3:-83519730	Msa1131100:CDS
AAACTGTGAAAGATTTATTA+AGG	0.284878	7_3:-83518901	Msa1131100:CDS
AAAGATTGATGAGAAATTGA+AGG	0.437819	7_3:-83518764	Msa1131100:intron
AAAGTGAGTCAAATATTGAA+GGG	0.601009	7_3:-83520033	Msa1131100:CDS
AAATTACCTATTTCAGGTCT+TGG	0.368746	7_3:+83519953	None:intergenic
AACCAGGTCGACGAGGTCGA+CGG	0.633162	7_3:-83519991	Msa1131100:CDS
AACGCATTTCGGTGGCAAAG+CGG	0.641653	7_3:-83519481	Msa1131100:CDS
AACTGAAACACCTCCATCAT+CGG	0.540100	7_3:-83519897	Msa1131100:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAGTGAGTCAAATATTGA+AGG	-	chr7_3:83517356-83517375	Msa1131100:CDS	30.0%
ACCTGAAATAGGTAATTTCT+GGG	-	chr7_3:83517442-83517461	Msa1131100:CDS	30.0%
TCAACAAACAAGTCATAATC+TGG	-	chr7_3:83517616-83517635	Msa1131100:intron	30.0%
ATAAAAAAACCATCCTAGCA+TGG	-	chr7_3:83517714-83517733	Msa1131100:intron	30.0%
CTTTCAACCATTTACTAATC+AGG	+	chr7_3:83517955-83517974	None:intergenic	30.0%
GATTAGTAAATGGTTGAAAG+AGG	-	chr7_3:83517955-83517974	Msa1131100:intron	30.0%
TTGAAATATCAGATGATGAC+CGG	+	chr7_3:83518362-83518381	None:intergenic	30.0%
AGTTATGGTCATGAAAACAA+AGG	+	chr7_3:83518417-83518436	None:intergenic	30.0%
TAAACTACTTCAGAGAGTTA+TGG	+	chr7_3:83518432-83518451	None:intergenic	30.0%
ATAATATCAATGGGAATGAG+AGG	-	chr7_3:83518667-83518686	Msa1131100:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	83517293	83520119	83517293	ID=Msa1131100;Name=Msa1131100
chr7_3	mRNA	83517293	83520119	83517293	ID=Msa1131100-mRNA-1;Parent=Msa1131100;Name=Msa1131100-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0\|0\|1\|1\|1\|7\|0\|554
chr7_3	exon	83519289	83520119	83519289	ID=Msa1131100-mRNA-1:exon:24810;Parent=Msa1131100-mRNA-1
chr7_3	exon	83519065	83519185	83519065	ID=Msa1131100-mRNA-1:exon:24809;Parent=Msa1131100-mRNA-1
chr7_3	exon	83518874	83518944	83518874	ID=Msa1131100-mRNA-1:exon:24808;Parent=Msa1131100-mRNA-1
chr7_3	exon	83518556	83518782	83518556	ID=Msa1131100-mRNA-1:exon:24807;Parent=Msa1131100-mRNA-1
chr7_3	exon	83518103	83518189	83518103	ID=Msa1131100-mRNA-1:exon:24806;Parent=Msa1131100-mRNA-1
chr7_3	exon	83517840	83517939	83517840	ID=Msa1131100-mRNA-1:exon:24805;Parent=Msa1131100-mRNA-1
chr7_3	exon	83517293	83517520	83517293	ID=Msa1131100-mRNA-1:exon:24804;Parent=Msa1131100-mRNA-1
chr7_3	CDS	83519289	83520119	83519289	ID=Msa1131100-mRNA-1:cds;Parent=Msa1131100-mRNA-1
chr7_3	CDS	83519065	83519185	83519065	ID=Msa1131100-mRNA-1:cds;Parent=Msa1131100-mRNA-1
chr7_3	CDS	83518874	83518944	83518874	ID=Msa1131100-mRNA-1:cds;Parent=Msa1131100-mRNA-1
chr7_3	CDS	83518556	83518782	83518556	ID=Msa1131100-mRNA-1:cds;Parent=Msa1131100-mRNA-1
chr7_3	CDS	83518103	83518189	83518103	ID=Msa1131100-mRNA-1:cds;Parent=Msa1131100-mRNA-1
chr7_3	CDS	83517840	83517939	83517840	ID=Msa1131100-mRNA-1:cds;Parent=Msa1131100-mRNA-1
chr7_3	CDS	83517293	83517520	83517293	ID=Msa1131100-mRNA-1:cds;Parent=Msa1131100-mRNA-1

Gene Sequence

>Msa1131100

ATGGCATATACTTTGAGGGTACGCACAAGACCAAATTATGTGGAAATAAGTGACTCAGAATCAGAAAGTGAGTCAAATATTGAAGGGTTAGAAGCAAACTGGGAAAAACCAGGTCGACGAGGTCGACGGTCATTTTCTCGTAGACCAAGACCTGAAATAGGTAATTTCTGGGAAACAAGAAATAATGCACAAAGTATGATAACTGAAACACCTCCATCATCGGTGAATGAAATAGCTACCATTGTTCCGGAAACGAGTATTAATCCGGAACAAAGTTTGCCAATGGAAACAGTTCCATCATCAATGAACGAAACAAGTAATGTTCAACAAACAAGTCATAATCTGGAACATAGCTTGATGACAGAAGAAACTCCAAGCGCAACAGCGGGGACTTCATCGCGTCAACCAGAAATAAAACATTATAAAAAAACCATCCTAGCATGGTTGACAACTTGCAAGGAAATTGATGAAGGGACCGAGGTGCGTTACCATGATGGGGAAAAACCGATAACCGGTCGAATTTTCAATGGAGCCATCTTATGTAGCTGTTGCGACGAGGAAATCTCTGTATGGAAGTTTGAGATGCATGCTGAAAGTGATAATATGCAACCATACAAACGCATTTCGGTGGCAAAGCGGAAGTCCTTCCTCCAAAACATCCTGATTAGTAAATGGTTGAAAGAGGATGAACAAAAACGTCGGGACATGTTCATGTATGCTCCCATACATGACATTGTTTGTTTAGTTTGTGGAAAAGGAGAAGATGAAGGGGGATTTATTAACTGTACAAAGTGTCCCTCCACTTATCACCGTTCTTGTGCTTTTATACAGGGTTTTTCTCAGGAAAACGACAACCATTGGTTATGTTCTTACTGCAAGTGCAAATACTGTAAGGGTGATGATGAAGAGGATTATCCTTTAGACATCATGTGCAGCCAATGCAACAAGCAGTGTCATTGGAAGTGCCTAAAAAAAACTGTGAAAGATTTATTAAGGACTCACTGTTCCGTAAGTTGTAAAGAGATTGATGAGAAATTGAAGGGATCAATCGGAATCCAAAATAATATCAATGGGAATGAGAGGTATTCTTGGAGAGTCCTCCAACAAATGGATACGAAAAGTGAGGATCATTATGTAATAAGCAATTCAAAGGTTGCAGCTGCTTGCATGTTGATGGAAGAAGCTTTTGGGATGATAACAGACACACATACTGGCGTCAATGTGGTGCAGAGTGTTCTATACAACCGCAGATCAAATCTGAGGAGGCTCGATTTTCGTCGATGTTATACATTTATCATCGAAGAAGATGACGCGATAATTGCTGCAGCTACCGTAAGATTTCATGGGAGAGAACTTGCAGAAATGCCTTTCATTGCCACAGATGAGGCATACAGAGGCAAACGAATTTGCCATTTGTTAATGGAGATAATTGAATCGTTTCTTCGAAGTCTTGAAGTTGAAAGGTTGACCATTCCATCTAATCCACAAACTGTTGAAATGTGGAAGCAAAAATATAACTTCAGTGAGGTCAACGACAAAAAGTTGAAGAAAGATATGGCTTCATATAACCTTTTGATGTTCCCCGGAGCTATACGATTAAGCAAAAGACTTCTACTGGACTTGAATGAGCCATTCGGGGATGTTGAGCCTAATACTGTCAATTAG

Protein sequence

>Msa1131100

MAYTLRVRTRPNYVEISDSESESESNIEGLEANWEKPGRRGRRSFSRRPRPEIGNFWETRNNAQSMITETPPSSVNEIATIVPETSINPEQSLPMETVPSSMNETSNVQQTSHNLEHSLMTEETPSATAGTSSRQPEIKHYKKTILAWLTTCKEIDEGTEVRYHDGEKPITGRIFNGAILCSCCDEEISVWKFEMHAESDNMQPYKRISVAKRKSFLQNILISKWLKEDEQKRRDMFMYAPIHDIVCLVCGKGEDEGGFINCTKCPSTYHRSCAFIQGFSQENDNHWLCSYCKCKYCKGDDEEDYPLDIMCSQCNKQCHWKCLKKTVKDLLRTHCSVSCKEIDEKLKGSIGIQNNINGNERYSWRVLQQMDTKSEDHYVISNSKVAAACMLMEEAFGMITDTHTGVNVVQSVLYNRRSNLRRLDFRRCYTFIIEEDDAIIAAATVRFHGRELAEMPFIATDEAYRGKRICHLLMEIIESFLRSLEVERLTIPSNPQTVEMWKQKYNFSEVNDKKLKKDMASYNLLMFPGAIRLSKRLLLDLNEPFGDVEPNTVN*