AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1133930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1133930 MtrunA17_Chr7g0214071 94.156 154 9 0 1 154 1 154 8.55e-109 310
Msa1133930 MtrunA17_Chr8g0385991 69.286 140 41 2 1 139 1 139 2.28e-68 206
Msa1133930 MtrunA17_Chr3g0131911 65.278 144 46 3 1 141 1 143 1.29e-61 189
Msa1133930 MtrunA17_Chr7g0243371 89.474 95 10 0 60 154 12 106 1.07e-59 181
Msa1133930 MtrunA17_Chr4g0047841 65.672 134 43 1 15 145 15 148 5.52e-58 184
Msa1133930 MtrunA17_Chr2g0318101 59.459 148 57 1 1 145 1 148 1.62e-56 180
Msa1133930 MtrunA17_Chr5g0417791 63.910 133 43 2 13 142 1 131 7.37e-55 173
Msa1133930 MtrunA17_Chr7g0252971 58.451 142 49 3 12 143 5 146 3.68e-54 174
Msa1133930 MtrunA17_Chr4g0042561 60.000 140 51 2 7 143 1 138 1.17e-53 170
Msa1133930 MtrunA17_Chr7g0263931 58.955 134 52 1 12 142 8 141 8.74e-53 170
Msa1133930 MtrunA17_Chr3g0124761 62.879 132 43 2 12 140 4 132 1.71e-51 165
Msa1133930 MtrunA17_Chr3g0109821 63.636 132 41 3 13 139 4 133 3.30e-51 172
Msa1133930 MtrunA17_Chr2g0326361 58.647 133 52 1 15 144 14 146 4.54e-51 165
Msa1133930 MtrunA17_Chr2g0309891 56.944 144 53 3 13 151 4 143 5.51e-51 166
Msa1133930 MtrunA17_Chr2g0316971 58.015 131 52 1 12 139 20 150 2.16e-50 165
Msa1133930 MtrunA17_Chr5g0433781 58.741 143 52 3 13 150 4 144 3.61e-50 169
Msa1133930 MtrunA17_Chr1g0147421 56.934 137 55 2 12 144 24 160 1.70e-49 162
Msa1133930 MtrunA17_Chr3g0139331 54.887 133 57 1 12 141 8 140 4.33e-49 160
Msa1133930 MtrunA17_Chr4g0060931 55.714 140 57 2 8 144 10 147 8.27e-49 160
Msa1133930 MtrunA17_Chr3g0091921 56.204 137 55 2 6 139 7 141 1.10e-48 159
Msa1133930 MtrunA17_Chr6g0484441 55.556 135 55 2 12 143 2 134 2.69e-48 158
Msa1133930 MtrunA17_Chr6g0453451 53.901 141 60 3 7 144 12 150 3.49e-48 158
Msa1133930 MtrunA17_Chr6g0481091 57.576 132 49 2 13 139 4 133 6.54e-48 155
Msa1133930 MtrunA17_Chr2g0309331 53.571 140 58 2 6 139 1 139 8.72e-48 157
Msa1133930 MtrunA17_Chr8g0384721 58.209 134 50 2 11 141 3 133 1.43e-47 155
Msa1133930 MtrunA17_Chr2g0318081 57.971 138 53 2 11 145 12 147 1.92e-47 157
Msa1133930 MtrunA17_Chr6g0461661 54.015 137 59 2 7 139 9 145 4.01e-47 156
Msa1133930 MtrunA17_Chr4g0017921 58.015 131 47 2 15 139 8 136 8.16e-47 155
Msa1133930 MtrunA17_Chr4g0018391 56.391 133 50 3 15 141 7 137 1.02e-46 155
Msa1133930 MtrunA17_Chr8g0372121 53.191 141 58 3 12 146 3 141 1.98e-46 153
Msa1133930 MtrunA17_Chr3g0144271 53.846 143 62 3 8 146 16 158 2.55e-46 155
Msa1133930 MtrunA17_Chr5g0405211 53.191 141 58 3 12 146 5 143 3.28e-46 154
Msa1133930 MtrunA17_Chr3g0130731 58.209 134 50 2 11 141 3 133 4.35e-46 152
Msa1133930 MtrunA17_Chr5g0398971 54.478 134 54 2 15 142 7 139 5.01e-46 153
Msa1133930 MtrunA17_Chr1g0200561 51.773 141 60 2 12 146 16 154 5.13e-46 153
Msa1133930 MtrunA17_Chr8g0359921 58.209 134 51 2 12 142 11 142 6.01e-46 152
Msa1133930 MtrunA17_Chr4g0056541 53.676 136 55 2 15 144 7 140 6.92e-46 153
Msa1133930 MtrunA17_Chr7g0253011 56.061 132 53 2 13 139 15 146 1.14e-45 153
Msa1133930 MtrunA17_Chr4g0054791 54.412 136 56 2 15 144 6 141 1.53e-45 151
Msa1133930 MtrunA17_Chr7g0217711 54.074 135 55 3 9 139 13 144 1.90e-45 146
Msa1133930 MtrunA17_Chr7g0217721 54.074 135 55 3 9 139 13 144 3.45e-45 151
Msa1133930 MtrunA17_Chr1g0183741 51.852 135 62 1 15 146 10 144 8.09e-45 148
Msa1133930 MtrunA17_Chr5g0400461 50.694 144 61 2 11 144 2 145 2.18e-44 148
Msa1133930 MtrunA17_Chr5g0442771 56.618 136 54 3 8 139 12 146 2.59e-44 147
Msa1133930 MtrunA17_Chr8g0346001 48.966 145 66 2 7 145 7 149 2.62e-44 150
Msa1133930 MtrunA17_Chr5g0417001 52.778 144 64 2 1 141 1 143 6.27e-44 149
Msa1133930 MtrunA17_Chr8g0361731 50.694 144 67 2 1 141 1 143 2.18e-43 147
Msa1133930 MtrunA17_Chr7g0261411 51.111 135 63 1 15 146 10 144 4.20e-43 144
Msa1133930 MtrunA17_Chr2g0311651 50.714 140 62 3 10 142 16 155 5.20e-43 144
Msa1133930 MtrunA17_Chr2g0311661 50.350 143 64 3 6 142 13 154 7.84e-43 143
Msa1133930 MtrunA17_Chr2g0312321 49.315 146 61 4 12 151 8 146 3.87e-42 142
Msa1133930 MtrunA17_Chr6g0453131 50.000 142 67 2 1 139 1 141 2.26e-41 142
Msa1133930 MtrunA17_Chr5g0428991 53.788 132 54 2 14 140 24 153 8.94e-40 141
Msa1133930 MtrunA17_Chr1g0201021 55.725 131 45 4 17 139 21 146 9.14e-40 140
Msa1133930 MtrunA17_Chr3g0128111 50.000 128 57 2 18 140 45 170 1.24e-39 134
Msa1133930 MtrunA17_Chr1g0197351 56.250 128 49 2 15 137 42 167 1.36e-39 139
Msa1133930 MtrunA17_Chr3g0128151 51.908 131 56 2 15 140 22 150 1.90e-39 140
Msa1133930 MtrunA17_Chr3g0130101 53.077 130 50 3 17 139 9 134 3.80e-39 135
Msa1133930 MtrunA17_Chr4g0076731 53.968 126 54 2 17 139 56 180 1.31e-37 133
Msa1133930 MtrunA17_Chr3g0092671 51.938 129 54 3 17 139 7 133 3.31e-37 133
Msa1133930 MtrunA17_Chr8g0345671 47.445 137 65 3 15 145 11 146 8.31e-37 130
Msa1133930 MtrunA17_Chr8g0364791 51.128 133 54 3 14 139 5 133 2.14e-36 130
Msa1133930 MtrunA17_Chr1g0197361 50.388 129 56 3 17 139 10 136 2.29e-36 131
Msa1133930 MtrunA17_Chr4g0038751 44.755 143 75 2 1 139 1 143 8.75e-35 122
Msa1133930 MtrunA17_Chr4g0050701 45.669 127 60 2 15 139 11 130 1.25e-34 119
Msa1133930 MtrunA17_Chr8g0384201 49.624 133 56 3 14 139 5 133 4.76e-34 124
Msa1133930 MtrunA17_Chr8g0345691 43.609 133 68 3 15 141 12 143 8.24e-32 117
Msa1133930 MtrunA17_Chr2g0321741 47.664 107 50 2 46 148 23 127 2.06e-29 110
Msa1133930 MtrunA17_Chr2g0321631 42.759 145 67 5 16 146 5 147 4.92e-29 106
Msa1133930 MtrunA17_Chr4g0026141 43.262 141 69 5 15 145 5 144 5.71e-29 107
Msa1133930 MtrunA17_Chr8g0345711 39.583 144 80 3 15 152 12 154 1.97e-28 103
Msa1133930 MtrunA17_Chr3g0113001 54.000 100 41 2 50 146 3 100 5.36e-28 105
Msa1133930 MtrunA17_Chr8g0345731 41.667 132 67 4 15 137 24 154 7.28e-28 101
Msa1133930 MtrunA17_Chr8g0345721 35.928 167 70 4 18 148 38 203 9.46e-27 99.8
Msa1133930 MtrunA17_Chr8g0384351 43.609 133 54 5 13 142 8 122 1.04e-25 96.7
Msa1133930 MtrunA17_Chr8g0345741 37.500 136 76 4 26 153 2 136 6.18e-25 93.6
Msa1133930 MtrunA17_Chr8g0345701 37.762 143 66 5 15 137 7 146 6.17e-24 91.7
Msa1133930 MtrunA17_Chr3g0113031 63.492 63 21 1 77 139 5 65 1.40e-23 92.8
Msa1133930 MtrunA17_Chr7g0266701 37.226 137 68 5 15 138 4 135 2.00e-23 92.4
Msa1133930 MtrunA17_Chr7g0251661 34.586 133 78 6 10 137 5 133 5.78e-19 78.6
Msa1133930 MtrunA17_Chr7g0251651 35.766 137 78 6 6 137 10 141 2.55e-18 77.4
Msa1133930 MtrunA17_Chr7g0251671 31.387 137 85 5 10 141 5 137 3.16e-17 73.9
Msa1133930 MtrunA17_Chr3g0130321 36.029 136 72 5 13 142 5 131 1.17e-16 73.6
Msa1133930 MtrunA17_Chr3g0113011 50.909 55 27 0 9 63 13 67 4.88e-14 63.2
Msa1133930 MtrunA17_Chr1g0168571 33.088 136 78 5 23 147 13 146 1.74e-12 63.5
Msa1133930 MtrunA17_Chr3g0113041 49.091 55 28 0 9 63 13 67 2.54e-12 58.9
Msa1133930 MtrunA17_Chr4g0040541 31.973 147 77 7 15 141 48 191 2.91e-12 62.8
Msa1133930 MtrunA17_Chr7g0274971 28.472 144 91 4 21 154 11 152 3.43e-12 61.6
Msa1133930 MtrunA17_Chr2g0282871 32.704 159 75 9 7 139 41 193 6.83e-12 61.6
Msa1133930 MtrunA17_Chr8g0367761 30.612 147 80 7 15 142 68 211 7.80e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1133930 AT5G13180.1 77.698 139 30 1 1 139 1 138 7.90e-82 241
Msa1133930 AT2G33480.2 70.779 154 43 1 1 154 1 152 1.55e-79 236
Msa1133930 AT2G33480.1 73.469 147 37 1 1 147 1 145 1.39e-78 234
Msa1133930 AT1G61110.1 66.917 133 40 2 11 140 12 143 1.34e-55 177
Msa1133930 AT3G04070.2 60.690 145 51 3 6 144 1 145 2.67e-55 177
Msa1133930 AT3G04070.1 60.690 145 51 3 6 144 1 145 3.55e-55 177
Msa1133930 AT1G69490.1 64.122 131 42 2 15 142 9 137 7.40e-53 169
Msa1133930 AT1G77450.1 60.432 139 47 3 6 140 1 135 9.29e-53 168
Msa1133930 AT3G15510.1 63.846 130 44 1 19 145 21 150 1.08e-52 171
Msa1133930 AT5G17260.1 58.273 139 51 2 13 146 4 140 2.45e-51 170
Msa1133930 AT1G65910.1 59.848 132 46 2 13 139 4 133 6.14e-51 172
Msa1133930 AT3G03200.1 56.835 139 53 2 13 146 4 140 7.71e-51 169
Msa1133930 AT5G53950.1 56.429 140 58 1 15 151 17 156 7.91e-51 166
Msa1133930 AT2G24430.2 57.554 139 56 1 9 144 10 148 1.22e-50 164
Msa1133930 AT2G24430.1 57.554 139 56 1 9 144 10 148 1.22e-50 164
Msa1133930 AT5G61430.1 57.143 147 55 4 6 146 7 151 1.32e-50 165
Msa1133930 AT5G39610.1 55.556 144 59 2 4 144 9 150 1.63e-50 163
Msa1133930 AT5G07680.1 56.738 141 53 3 12 146 14 152 1.37e-49 162
Msa1133930 AT5G07680.2 57.971 138 50 3 15 146 3 138 1.65e-49 161
Msa1133930 AT5G18270.2 57.778 135 53 2 13 144 19 152 3.99e-49 161
Msa1133930 AT3G04060.1 57.778 135 53 2 13 144 18 151 5.80e-49 160
Msa1133930 AT5G18270.1 57.778 135 53 2 13 144 19 152 8.95e-49 160
Msa1133930 AT3G29035.1 57.353 136 53 2 7 139 16 149 1.05e-48 159
Msa1133930 AT3G15170.1 52.448 143 65 1 12 151 17 159 1.40e-48 159
Msa1133930 AT1G76420.1 55.072 138 57 2 12 145 19 155 2.64e-48 159
Msa1133930 AT4G17980.1 53.333 135 58 1 11 140 2 136 4.16e-48 156
Msa1133930 AT3G17730.1 53.846 143 59 2 13 150 4 144 4.18e-48 155
Msa1133930 AT3G18400.1 56.391 133 53 2 12 141 2 132 5.02e-48 157
Msa1133930 AT1G54330.1 59.155 142 47 3 13 147 4 141 6.69e-48 157
Msa1133930 AT4G17980.2 53.333 135 58 1 11 140 2 136 7.27e-48 156
Msa1133930 AT5G46590.2 52.143 140 61 2 11 145 2 140 8.59e-48 156
Msa1133930 AT5G46590.1 52.143 140 61 2 11 145 2 140 8.92e-48 156
Msa1133930 AT1G33280.1 54.676 139 55 2 15 147 8 144 1.23e-47 156
Msa1133930 AT1G01720.1 60.305 131 46 2 13 140 5 132 1.45e-47 155
Msa1133930 AT4G27410.2 58.015 131 50 2 12 139 11 139 1.63e-47 155
Msa1133930 AT5G62380.2 54.610 141 54 4 13 146 5 142 1.73e-46 154
Msa1133930 AT5G62380.1 54.610 141 54 4 13 146 5 142 1.73e-46 154
Msa1133930 AT1G52890.1 58.015 131 50 2 12 139 11 139 2.17e-46 153
Msa1133930 AT5G66300.1 53.020 149 60 4 4 145 1 146 2.35e-46 152
Msa1133930 AT1G52880.1 62.016 129 44 2 19 142 21 149 2.66e-46 153
Msa1133930 AT1G33060.2 57.252 131 49 2 15 140 24 152 3.10e-46 159
Msa1133930 AT1G33060.1 57.252 131 49 2 15 140 24 152 3.49e-46 159
Msa1133930 AT1G71930.2 51.799 139 59 2 15 147 9 145 4.40e-46 153
Msa1133930 AT1G71930.1 51.799 139 59 2 15 147 9 145 4.40e-46 153
Msa1133930 AT4G10350.1 55.970 134 51 2 15 142 9 140 4.41e-46 153
Msa1133930 AT1G62700.1 57.037 135 50 3 14 142 6 138 4.70e-46 154
Msa1133930 AT1G62700.2 57.037 135 50 3 14 142 6 138 4.70e-46 154
Msa1133930 AT3G61910.1 50.000 142 63 3 7 142 3 142 8.38e-46 152
Msa1133930 AT1G12260.2 55.639 133 51 3 15 141 7 137 1.15e-45 152
Msa1133930 AT2G46770.1 51.724 145 62 3 1 139 2 144 1.37e-45 152
Msa1133930 AT4G36160.2 52.174 138 58 2 15 146 14 149 1.40e-45 153
Msa1133930 AT4G36160.1 52.174 138 58 2 15 146 10 145 1.44e-45 153
Msa1133930 AT4G36160.3 52.174 138 58 2 15 146 10 145 1.44e-45 153
Msa1133930 AT5G63790.1 53.846 143 60 2 2 141 37 176 1.92e-45 151
Msa1133930 AT5G63790.2 53.846 143 60 2 2 141 47 186 2.55e-45 150
Msa1133930 AT2G18060.3 52.899 138 57 3 15 146 9 144 2.61e-45 152
Msa1133930 AT2G18060.1 52.899 138 57 3 15 146 9 144 2.61e-45 152
Msa1133930 AT1G12260.1 55.639 133 51 3 15 141 7 137 3.36e-45 152
Msa1133930 AT1G79580.3 52.817 142 60 2 7 142 9 149 3.41e-45 152
Msa1133930 AT1G79580.5 52.817 142 60 2 7 142 9 149 3.41e-45 152
Msa1133930 AT1G79580.4 52.817 142 60 2 7 142 9 149 3.41e-45 152
Msa1133930 AT1G79580.2 52.817 142 60 2 7 142 9 149 3.41e-45 152
Msa1133930 AT1G79580.1 52.817 142 60 2 7 142 9 149 3.41e-45 152
Msa1133930 AT4G27410.3 51.351 148 50 2 12 139 11 156 7.82e-45 149
Msa1133930 AT3G15500.1 57.252 131 51 2 12 139 11 139 8.05e-45 149
Msa1133930 AT5G08790.1 57.463 134 49 3 12 141 4 133 1.15e-44 148
Msa1133930 AT4G35580.1 56.489 131 50 2 15 140 9 137 1.32e-44 153
Msa1133930 AT1G32770.1 51.079 139 60 2 10 142 11 147 1.38e-44 150
Msa1133930 AT4G35580.3 56.489 131 50 2 15 140 9 137 1.54e-44 153
Msa1133930 AT4G35580.2 56.489 131 50 2 15 140 9 137 1.55e-44 153
Msa1133930 AT3G10490.1 56.489 131 50 2 15 140 27 155 4.15e-44 145
Msa1133930 AT3G10480.1 57.252 131 49 2 15 140 27 155 9.08e-44 149
Msa1133930 AT3G10480.2 57.252 131 49 2 15 140 27 155 9.12e-44 149
Msa1133930 AT5G39820.1 52.448 143 64 2 2 141 8 149 1.06e-43 147
Msa1133930 AT1G56010.2 50.000 144 66 3 12 151 16 157 2.70e-43 145
Msa1133930 AT3G12977.1 51.908 131 58 2 12 139 15 143 4.12e-43 144
Msa1133930 AT3G10500.1 50.331 151 61 3 15 153 9 157 9.57e-43 149
Msa1133930 AT5G04410.1 55.725 131 51 2 15 140 9 137 2.69e-42 147
Msa1133930 AT3G10490.2 56.489 131 50 2 15 140 27 155 4.22e-42 145
Msa1133930 AT1G26870.1 52.308 130 59 1 12 138 13 142 4.03e-41 142
Msa1133930 AT5G24590.2 48.344 151 65 3 15 153 13 162 4.70e-41 142
Msa1133930 AT1G32510.1 52.593 135 54 2 15 139 6 140 1.00e-40 138
Msa1133930 AT2G33480.3 70.455 88 24 1 60 147 3 88 2.21e-40 135
Msa1133930 AT1G34180.3 55.814 129 48 3 17 139 18 143 2.91e-40 140
Msa1133930 AT1G34180.1 55.814 129 48 3 17 139 18 143 8.98e-40 140
Msa1133930 AT1G34190.1 55.039 129 49 3 17 139 18 143 9.11e-40 140
Msa1133930 AT2G17040.1 50.000 134 63 2 17 146 8 141 2.07e-39 134
Msa1133930 AT3G49530.2 47.857 140 64 3 15 146 13 151 2.40e-39 137
Msa1133930 AT3G49530.1 47.857 140 64 3 15 146 13 151 2.71e-39 138
Msa1133930 AT3G10480.3 45.732 164 49 2 15 140 27 188 3.34e-39 139
Msa1133930 AT1G34180.4 51.064 141 48 3 17 139 18 155 4.18e-39 137
Msa1133930 AT2G02450.1 53.968 126 54 2 17 139 53 177 4.18e-39 136
Msa1133930 AT2G02450.2 53.968 126 54 2 17 139 53 177 7.81e-39 136
Msa1133930 AT4G28530.1 47.586 145 57 3 14 139 9 153 8.70e-39 134
Msa1133930 AT1G34180.2 51.064 141 48 3 17 139 18 155 1.08e-38 138
Msa1133930 AT3G12910.1 48.611 144 60 4 17 146 23 166 4.86e-38 131
Msa1133930 AT2G43000.1 50.388 129 59 2 17 142 20 146 8.32e-38 130
Msa1133930 AT5G64060.1 50.000 134 60 2 11 139 2 133 1.34e-37 132
Msa1133930 AT5G04395.1 42.405 158 74 2 12 152 25 182 1.04e-36 125
Msa1133930 AT2G27300.1 45.652 138 69 2 15 148 14 149 1.31e-36 129
Msa1133930 AT5G09330.5 52.593 135 55 3 11 139 2 133 2.51e-36 130
Msa1133930 AT5G09330.2 52.593 135 55 3 11 139 2 133 2.51e-36 130
Msa1133930 AT5G09330.4 52.593 135 55 3 11 139 2 133 2.51e-36 130
Msa1133930 AT5G09330.3 52.593 135 55 3 11 139 2 133 2.51e-36 130
Msa1133930 AT5G09330.1 52.593 135 55 3 11 139 2 133 2.51e-36 130
Msa1133930 AT3G44290.2 44.853 136 69 2 17 148 16 149 3.25e-36 125
Msa1133930 AT3G44290.1 44.853 136 69 2 17 148 16 149 2.92e-35 125
Msa1133930 AT5G22290.1 46.400 125 61 2 17 137 23 145 7.17e-35 124
Msa1133930 AT5G64530.2 44.961 129 58 3 13 139 1 118 1.85e-32 113
Msa1133930 AT5G64530.1 44.961 129 58 3 13 139 1 118 9.06e-32 112
Msa1133930 AT1G32870.1 50.355 141 59 4 4 139 1 135 2.85e-30 114
Msa1133930 AT1G32870.2 50.355 141 59 4 4 139 1 135 3.01e-30 114
Msa1133930 AT1G32870.3 50.355 141 59 4 4 139 37 171 3.51e-30 114
Msa1133930 AT5G14000.2 39.860 143 81 3 1 140 1 141 6.48e-29 104
Msa1133930 AT1G02230.1 43.056 144 71 5 16 151 4 144 7.34e-29 108
Msa1133930 AT4G10350.2 64.000 75 25 1 65 139 18 90 1.38e-28 107
Msa1133930 AT5G61430.2 60.000 85 29 2 65 146 6 88 3.03e-28 105
Msa1133930 AT5G50820.1 40.141 142 78 3 6 145 8 144 5.55e-28 102
Msa1133930 AT5G14000.1 39.860 143 81 3 1 140 1 141 6.77e-28 103
Msa1133930 AT1G02250.1 42.069 145 73 4 16 152 4 145 1.02e-26 103
Msa1133930 AT4G01520.1 42.537 134 69 4 16 141 5 138 1.64e-26 101
Msa1133930 AT1G56010.1 55.422 83 35 1 69 151 10 90 3.14e-26 100
Msa1133930 AT4G01540.4 43.182 132 67 4 18 141 7 138 5.32e-26 101
Msa1133930 AT4G01540.2 43.182 132 67 4 18 141 7 138 6.17e-26 102
Msa1133930 AT4G01540.3 43.182 132 67 4 18 141 7 138 6.85e-26 101
Msa1133930 AT4G01540.1 43.182 132 67 4 18 141 7 138 9.20e-26 102
Msa1133930 AT4G01550.1 41.538 130 69 3 18 140 7 136 1.64e-25 100
Msa1133930 AT3G12977.2 58.108 74 29 1 66 139 19 90 6.53e-25 95.9
Msa1133930 AT3G44350.1 39.568 139 73 4 15 144 5 141 5.99e-24 91.7
Msa1133930 AT3G04420.2 42.636 129 65 4 16 137 4 130 1.10e-23 94.0
Msa1133930 AT3G04420.1 42.636 129 65 4 16 137 4 130 1.74e-23 94.4
Msa1133930 AT5G22380.1 39.855 138 71 4 18 145 8 143 1.81e-23 92.4
Msa1133930 AT3G44350.2 39.568 139 73 4 15 144 5 141 4.73e-23 91.3
Msa1133930 AT4G28530.2 40.310 129 58 3 14 123 9 137 5.03e-23 92.8
Msa1133930 AT1G02220.1 41.667 132 59 5 16 137 4 127 3.29e-21 88.6
Msa1133930 AT3G10490.4 60.714 56 20 1 85 140 2 55 5.53e-17 76.6
Msa1133930 AT3G10490.3 60.714 56 20 1 85 140 2 55 5.53e-17 76.6
Msa1133930 AT1G01010.1 35.821 134 69 5 18 137 6 136 8.90e-17 76.6
Msa1133930 AT2G43000.2 51.515 66 30 1 77 142 5 68 2.90e-16 72.8
Msa1133930 AT2G18060.2 52.632 57 25 1 90 146 2 56 3.69e-16 73.6
Msa1133930 AT3G56530.1 34.507 142 81 5 12 145 49 186 2.16e-15 72.0
Msa1133930 AT3G55210.1 34.211 152 74 7 15 145 11 157 6.33e-14 67.8
Msa1133930 AT5G14000.3 50.000 62 31 0 1 62 1 62 3.29e-13 65.5
Msa1133930 AT5G22290.2 57.447 47 18 1 91 137 2 46 8.14e-13 64.3
Msa1133930 AT1G28470.1 32.716 162 83 10 15 153 77 235 2.61e-12 63.5
Msa1133930 AT4G29230.3 32.468 154 74 8 13 139 46 196 3.07e-12 63.5
Msa1133930 AT4G29230.2 32.468 154 74 8 13 139 45 195 4.86e-12 63.2
Msa1133930 AT4G29230.1 33.548 155 71 9 13 139 46 196 5.01e-12 62.8
Msa1133930 AT3G04430.1 30.769 143 84 4 21 149 6 147 1.55e-11 60.1
Msa1133930 AT5G56620.1 30.573 157 76 7 13 139 41 194 1.56e-11 61.2
Msa1133930 AT5G56620.2 30.573 157 76 7 13 139 41 194 2.09e-11 61.2
Msa1133930 AT5G56620.3 30.573 157 76 7 13 139 41 194 2.09e-11 61.2

Find 97 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATTTGTTTGTAATTTAA+AGG 0.153405 7_4:+239245 Msa1133930:exon
CTTCCATCCTCATCCTCTTT+TGG 0.172089 7_4:+239592 Msa1133930:three_prime_UTR
TCTTAATGCCGACCTCATTT+TGG 0.179661 7_4:-239703 None:intergenic
TCGGTTCCCATTTGGGTATT+TGG 0.189837 7_4:-239009 None:intergenic
AATATTAATATGAATGGAAT+TGG 0.245805 7_4:+239286 Msa1133930:three_prime_UTR
CTGTTAGATCGGTTCCCATT+TGG 0.268180 7_4:-239017 None:intergenic
ATTTGGATTCTTATATTAGA+TGG 0.293501 7_4:-239794 None:intergenic
ATAAAAGGAAGGGGAGGGAG+GGG 0.307261 7_4:-239633 None:intergenic
TAGACAGACCTAATAATAAA+AGG 0.323180 7_4:-239648 None:intergenic
AGAAAAGAAAGGAAAGGAAA+AGG 0.323254 7_4:-238376 None:intergenic
TGTTAGATCGGTTCCCATTT+GGG 0.328133 7_4:-239016 None:intergenic
CACTTACAGAATCTCTTAAA+AGG 0.329098 7_4:-239838 None:intergenic
GAGCTACAAACTCTGGTTAC+TGG 0.339051 7_4:+239039 Msa1133930:CDS
GAAAAGAAAGGAAAGGAAAA+GGG 0.352536 7_4:-238375 None:intergenic
TGAATTAATATTAATATGAA+TGG 0.355201 7_4:+239280 Msa1133930:three_prime_UTR
ATCTTTGCAAGTCTGATCCT+TGG 0.370348 7_4:+238763 Msa1133930:CDS
AGGTGAAGAAGGAAGAGAAA+AGG 0.387206 7_4:-238437 None:intergenic
CCAAGCAGTTGCAGCAACTT+TGG 0.391601 7_4:+239397 Msa1133930:three_prime_UTR
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 7_4:+238764 Msa1133930:CDS
TAATAAAAGGAAGGGGAGGG+AGG 0.405142 7_4:-239635 None:intergenic
CAGTGGAATCACAAATGAAT+TGG 0.418146 7_4:+239537 Msa1133930:three_prime_UTR
ATATTAATATGAATGGAATT+GGG 0.426859 7_4:+239287 Msa1133930:three_prime_UTR
AGAATAAAGAAAGGTGAAGA+AGG 0.432395 7_4:-238448 None:intergenic
GGTGAAGAAGGAAGAGAAAA+GGG 0.437863 7_4:-238436 None:intergenic
TTAAGCATTATTTCCAAAAG+AGG 0.440986 7_4:-239605 None:intergenic
TAAAAGGAAGGGGAGGGAGG+GGG 0.442503 7_4:-239632 None:intergenic
AAAGAAGCCAAATACCCAAA+TGG 0.451382 7_4:+239002 Msa1133930:CDS
TCTGGTTACTGGAAAGCAAC+TGG 0.454286 7_4:+239050 Msa1133930:CDS
TCAAAGAGTCATGAAGTTGT+TGG 0.455914 7_4:+239095 Msa1133930:CDS
GACTTGCAAAGATCAACTTC+AGG 0.465462 7_4:-238753 None:intergenic
AAGATCAACTTCAGGAATGA+TGG 0.468508 7_4:-238745 None:intergenic
TTTCTATGATTTCTTGGCAC+AGG 0.468739 7_4:+239474 Msa1133930:three_prime_UTR
CTTCATCAGTTGGATGGAAA+CGG 0.481185 7_4:-238668 None:intergenic
AAGAAGCCAAATACCCAAAT+GGG 0.481949 7_4:+239003 Msa1133930:CDS
TTCCTCTCACTCCAACCCCT+TGG 0.484311 7_4:+239202 Msa1133930:CDS
GAAAGTGAAAAGAGAGAGAA+GGG 0.488212 7_4:+238227 Msa1133930:five_prime_UTR
AATAAAAGGAAGGGGAGGGA+GGG 0.488281 7_4:-239634 None:intergenic
CCAAAGTTGCTGCAACTGCT+TGG 0.489565 7_4:-239397 None:intergenic
ACAACAAGTTCTTCATCAGT+TGG 0.490523 7_4:-238678 None:intergenic
CTCAAATTCAAGTTCAAAAG+TGG 0.493719 7_4:+239447 Msa1133930:three_prime_UTR
TTTGTGATTCCACTGCTAGC+TGG 0.494748 7_4:-239529 None:intergenic
ATTATTTCCAAAAGAGGATG+AGG 0.507684 7_4:-239599 None:intergenic
CGACATTTGTTTGAGTTGAG+TGG 0.507813 7_4:-238266 None:intergenic
GAATGATGGAAGCAGGTAAA+GGG 0.510410 7_4:-238731 None:intergenic
CAAGTTCTTCATCAGTTGGA+TGG 0.512113 7_4:-238674 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.514880 7_4:-239196 None:intergenic
GAAAGGAAAGGAAAAGGGCA+TGG 0.515086 7_4:-238370 None:intergenic
ACTGCTAGCTGGTGAGGAGG+AGG 0.524725 7_4:-239518 None:intergenic
ATCTCAAATGTCCCAAAATG+AGG 0.524855 7_4:+239691 Msa1133930:three_prime_UTR
TGAAAGTGAAAAGAGAGAGA+AGG 0.525592 7_4:+238226 Msa1133930:five_prime_UTR
AGTTTGTAGCTCTGTTAGAT+CGG 0.532621 7_4:-239028 None:intergenic
GGAATGATGGAAGCAGGTAA+AGG 0.533367 7_4:-238732 None:intergenic
GAATAGAATAGAATAAAGAA+AGG 0.542048 7_4:-238457 None:intergenic
ACTTCAGGAATGATGGAAGC+AGG 0.542259 7_4:-238738 None:intergenic
CAGACCTAATAATAAAAGGA+AGG 0.543501 7_4:-239644 None:intergenic
TACAGAATCTCTTAAAAGGA+GGG 0.547157 7_4:-239834 None:intergenic
GACCAAGGGGTTGGAGTGAG+AGG 0.548262 7_4:-239204 None:intergenic
CTCATGGTTCAAGAACTGAT+TGG 0.548704 7_4:+239156 Msa1133930:CDS
AGAAAGACTGACCAAGGGGT+TGG 0.548887 7_4:-239213 None:intergenic
GTTGGATGGAAACGGAAACC+TGG 0.549587 7_4:-238660 None:intergenic
TGTTCAATACTTGAAGCGTA+AGG 0.550952 7_4:+238698 Msa1133930:CDS
AGACCTAATAATAAAAGGAA+GGG 0.556819 7_4:-239643 None:intergenic
ATAATAAAGAAAGAAAAGAA+AGG 0.557362 7_4:-238387 None:intergenic
TCTAACAGAGCTACAAACTC+TGG 0.560803 7_4:+239032 Msa1133930:CDS
AAAGAAAGAAAAGAAAGGAA+AGG 0.563571 7_4:-238382 None:intergenic
TTTCCAAAAGAGGATGAGGA+TGG 0.565330 7_4:-239595 None:intergenic
AAAGAAAGAAAGACTGACCA+AGG 0.567493 7_4:-239219 None:intergenic
TTACAGAATCTCTTAAAAGG+AGG 0.569875 7_4:-239835 None:intergenic
TCTGATCCTTGGGATTTACC+TGG 0.570788 7_4:+238774 Msa1133930:CDS
GACCTAATAATAAAAGGAAG+GGG 0.571777 7_4:-239642 None:intergenic
GATTCCACTGCTAGCTGGTG+AGG 0.572585 7_4:-239524 None:intergenic
AAATTCAAGTTCAAAAGTGG+TGG 0.574345 7_4:+239450 Msa1133930:three_prime_UTR
TCCTCCTCACCAGCTAGCAG+TGG 0.575561 7_4:+239520 Msa1133930:three_prime_UTR
TTTGTCGCATATCTCTGAAG+AGG 0.578387 7_4:+239338 Msa1133930:three_prime_UTR
TACAGAGGCAAACCACCTCA+TGG 0.581454 7_4:+239140 Msa1133930:CDS
CTAATAATAAAAGGAAGGGG+AGG 0.584791 7_4:-239639 None:intergenic
ACAGAATCTCTTAAAAGGAG+GGG 0.595413 7_4:-239833 None:intergenic
TCCACTGCTAGCTGGTGAGG+AGG 0.609090 7_4:-239521 None:intergenic
ATTTGTTTGTAATTTAAAGG+TGG 0.612720 7_4:+239248 Msa1133930:three_prime_UTR
CGCATATCTCTGAAGAGGAG+AGG 0.612885 7_4:+239343 Msa1133930:three_prime_UTR
ACTGTGGTGTGTCACAATCA+TGG 0.614833 7_4:+239874 Msa1133930:three_prime_UTR
TACATACCAGGTAAATCCCA+AGG 0.614952 7_4:-238780 None:intergenic
TCAGTTCTTGAACCATGAGG+TGG 0.615010 7_4:-239152 None:intergenic
CAAATGTCCCAAAATGAGGT+CGG 0.618561 7_4:+239695 Msa1133930:three_prime_UTR
GAACTTGTTTACCACACGAG+TGG 0.627379 7_4:+238539 Msa1133930:five_prime_UTR
AAGAAAGAAAGACTGACCAA+GGG 0.630464 7_4:-239218 None:intergenic
GGTGAAGTGAGATTGCCACC+AGG 0.631641 7_4:+238642 Msa1133930:CDS
TAATAATAAAAGGAAGGGGA+GGG 0.640264 7_4:-239638 None:intergenic
CAGTTGCAGCAACTTTGGTG+AGG 0.652051 7_4:+239402 Msa1133930:three_prime_UTR
ATATCTCTGAAGAGGAGAGG+TGG 0.663298 7_4:+239346 Msa1133930:three_prime_UTR
TAGGTGATATGGAACAAGAG+AGG 0.664397 7_4:+238964 Msa1133930:intron
AAATGTCAAAGCCACTCGTG+TGG 0.666435 7_4:-238550 None:intergenic
ATGGGTCAATGAGTCTGACA+AGG 0.679300 7_4:-238311 None:intergenic
CAATCAGTTCTTGAACCATG+AGG 0.707588 7_4:-239155 None:intergenic
AGAAAGAAAGACTGACCAAG+GGG 0.714873 7_4:-239217 None:intergenic
GGATGGAAACGGAAACCTGG+TGG 0.721884 7_4:-238657 None:intergenic
GTGTATGTTTGATATCACTG+TGG 0.783042 7_4:+239858 Msa1133930:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATTAATATTAATATGAA+TGG + chr7_4:239280-239299 Msa1133930:three_prime_UTR 10.0%
!! TGAATTAATATTAATATGAA+TGG + chr7_4:239280-239299 Msa1133930:three_prime_UTR 10.0%
!! ATAATAAAGAAAGAAAAGAA+AGG - chr7_4:238390-238409 None:intergenic 15.0%
!! TTATAAATGAAGAAAAGAAA+AGG - chr7_4:238806-238825 None:intergenic 15.0%
!!! TGAATTTGTTTGTAATTTAA+AGG + chr7_4:239245-239264 Msa1133930:exon 15.0%
!! AATATTAATATGAATGGAAT+TGG + chr7_4:239286-239305 Msa1133930:three_prime_UTR 15.0%
!! ATATTAATATGAATGGAATT+GGG + chr7_4:239287-239306 Msa1133930:three_prime_UTR 15.0%
!!! GAAAATAAAGAATTTTCATT+TGG - chr7_4:239814-239833 None:intergenic 15.0%
!! ATAATAAAGAAAGAAAAGAA+AGG - chr7_4:238390-238409 None:intergenic 15.0%
!! TTATAAATGAAGAAAAGAAA+AGG - chr7_4:238806-238825 None:intergenic 15.0%
!!! TGAATTTGTTTGTAATTTAA+AGG + chr7_4:239245-239264 Msa1133930:exon 15.0%
!! AATATTAATATGAATGGAAT+TGG + chr7_4:239286-239305 Msa1133930:three_prime_UTR 15.0%
!! ATATTAATATGAATGGAATT+GGG + chr7_4:239287-239306 Msa1133930:three_prime_UTR 15.0%
!!! GAAAATAAAGAATTTTCATT+TGG - chr7_4:239814-239833 None:intergenic 15.0%
!! GAATAGAATAGAATAAAGAA+AGG - chr7_4:238460-238479 None:intergenic 20.0%
!! AAAAGAAAAAGAAGATAAGA+TGG + chr7_4:238593-238612 Msa1133930:exon 20.0%
!!! GGATTAATTCTTTTTCTTTT+AGG + chr7_4:238945-238964 Msa1133930:intron 20.0%
!! ATTTGTTTGTAATTTAAAGG+TGG + chr7_4:239248-239267 Msa1133930:three_prime_UTR 20.0%
!! ATTTGGATTCTTATATTAGA+TGG - chr7_4:239797-239816 None:intergenic 20.0%
!! GAATAGAATAGAATAAAGAA+AGG - chr7_4:238460-238479 None:intergenic 20.0%
!! AAAAGAAAAAGAAGATAAGA+TGG + chr7_4:238593-238612 Msa1133930:exon 20.0%
!!! GGATTAATTCTTTTTCTTTT+AGG + chr7_4:238945-238964 Msa1133930:intron 20.0%
!! ATTTGTTTGTAATTTAAAGG+TGG + chr7_4:239248-239267 Msa1133930:three_prime_UTR 20.0%
!! ATTTGGATTCTTATATTAGA+TGG - chr7_4:239797-239816 None:intergenic 20.0%
!! GTGTCTTCTTTTATAGTAAT+GGG - chr7_4:238332-238351 None:intergenic 25.0%
!! TGTGTCTTCTTTTATAGTAA+TGG - chr7_4:238333-238352 None:intergenic 25.0%
! AAAGAAAGAAAAGAAAGGAA+AGG - chr7_4:238385-238404 None:intergenic 25.0%
!! CTTTGCTACAACTTTTTAAT+GGG + chr7_4:238497-238516 Msa1133930:five_prime_UTR 25.0%
!! ATGAATTTTGTGAAGAAGAA+TGG + chr7_4:238621-238640 Msa1133930:CDS 25.0%
!!! TCTTTTTCTTTTAGGTGATA+TGG + chr7_4:238953-238972 Msa1133930:intron 25.0%
!! TCTTTTTGCAGAATGAAAAT+TGG + chr7_4:239311-239330 Msa1133930:three_prime_UTR 25.0%
!! CTTTTTGCAGAATGAAAATT+GGG + chr7_4:239312-239331 Msa1133930:three_prime_UTR 25.0%
! TTAAGCATTATTTCCAAAAG+AGG - chr7_4:239608-239627 None:intergenic 25.0%
! AGACCTAATAATAAAAGGAA+GGG - chr7_4:239646-239665 None:intergenic 25.0%
! TAGACAGACCTAATAATAAA+AGG - chr7_4:239651-239670 None:intergenic 25.0%
!!! CATTTTTCAATAAATCACGA+TGG - chr7_4:239904-239923 None:intergenic 25.0%
!! GTGTCTTCTTTTATAGTAAT+GGG - chr7_4:238332-238351 None:intergenic 25.0%
!! TGTGTCTTCTTTTATAGTAA+TGG - chr7_4:238333-238352 None:intergenic 25.0%
! AAAGAAAGAAAAGAAAGGAA+AGG - chr7_4:238385-238404 None:intergenic 25.0%
!! CTTTGCTACAACTTTTTAAT+GGG + chr7_4:238497-238516 Msa1133930:five_prime_UTR 25.0%
!! ATGAATTTTGTGAAGAAGAA+TGG + chr7_4:238621-238640 Msa1133930:CDS 25.0%
!!! TCTTTTTCTTTTAGGTGATA+TGG + chr7_4:238953-238972 Msa1133930:intron 25.0%
!! TCTTTTTGCAGAATGAAAAT+TGG + chr7_4:239311-239330 Msa1133930:three_prime_UTR 25.0%
!! CTTTTTGCAGAATGAAAATT+GGG + chr7_4:239312-239331 Msa1133930:three_prime_UTR 25.0%
! TTAAGCATTATTTCCAAAAG+AGG - chr7_4:239608-239627 None:intergenic 25.0%
! AGACCTAATAATAAAAGGAA+GGG - chr7_4:239646-239665 None:intergenic 25.0%
! TAGACAGACCTAATAATAAA+AGG - chr7_4:239651-239670 None:intergenic 25.0%
!!! CATTTTTCAATAAATCACGA+TGG - chr7_4:239904-239923 None:intergenic 25.0%
GAAAAGAAAGGAAAGGAAAA+GGG - chr7_4:238378-238397 None:intergenic 30.0%
AGAAAAGAAAGGAAAGGAAA+AGG - chr7_4:238379-238398 None:intergenic 30.0%
AGAATAAAGAAAGGTGAAGA+AGG - chr7_4:238451-238470 None:intergenic 30.0%
CCATTAAAAAGTTGTAGCAA+AGG - chr7_4:238499-238518 None:intergenic 30.0%
! CCTTTGCTACAACTTTTTAA+TGG + chr7_4:238496-238515 Msa1133930:five_prime_UTR 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG + chr7_4:239125-239144 Msa1133930:CDS 30.0%
! CTCAAATTCAAGTTCAAAAG+TGG + chr7_4:239447-239466 Msa1133930:three_prime_UTR 30.0%
! AAATTCAAGTTCAAAAGTGG+TGG + chr7_4:239450-239469 Msa1133930:three_prime_UTR 30.0%
ATTATTTCCAAAAGAGGATG+AGG - chr7_4:239602-239621 None:intergenic 30.0%
TAATAATAAAAGGAAGGGGA+GGG - chr7_4:239641-239660 None:intergenic 30.0%
GACCTAATAATAAAAGGAAG+GGG - chr7_4:239645-239664 None:intergenic 30.0%
CAGACCTAATAATAAAAGGA+AGG - chr7_4:239647-239666 None:intergenic 30.0%
TACAGAATCTCTTAAAAGGA+GGG - chr7_4:239837-239856 None:intergenic 30.0%
TTACAGAATCTCTTAAAAGG+AGG - chr7_4:239838-239857 None:intergenic 30.0%
CACTTACAGAATCTCTTAAA+AGG - chr7_4:239841-239860 None:intergenic 30.0%
GAAAAGAAAGGAAAGGAAAA+GGG - chr7_4:238378-238397 None:intergenic 30.0%
AGAAAAGAAAGGAAAGGAAA+AGG - chr7_4:238379-238398 None:intergenic 30.0%
AGAATAAAGAAAGGTGAAGA+AGG - chr7_4:238451-238470 None:intergenic 30.0%
CCATTAAAAAGTTGTAGCAA+AGG - chr7_4:238499-238518 None:intergenic 30.0%
! CCTTTGCTACAACTTTTTAA+TGG + chr7_4:238496-238515 Msa1133930:five_prime_UTR 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG + chr7_4:239125-239144 Msa1133930:CDS 30.0%
! CTCAAATTCAAGTTCAAAAG+TGG + chr7_4:239447-239466 Msa1133930:three_prime_UTR 30.0%
! AAATTCAAGTTCAAAAGTGG+TGG + chr7_4:239450-239469 Msa1133930:three_prime_UTR 30.0%
ATTATTTCCAAAAGAGGATG+AGG - chr7_4:239602-239621 None:intergenic 30.0%
TAATAATAAAAGGAAGGGGA+GGG - chr7_4:239641-239660 None:intergenic 30.0%
GACCTAATAATAAAAGGAAG+GGG - chr7_4:239645-239664 None:intergenic 30.0%
CAGACCTAATAATAAAAGGA+AGG - chr7_4:239647-239666 None:intergenic 30.0%
TACAGAATCTCTTAAAAGGA+GGG - chr7_4:239837-239856 None:intergenic 30.0%
TTACAGAATCTCTTAAAAGG+AGG - chr7_4:239838-239857 None:intergenic 30.0%
CACTTACAGAATCTCTTAAA+AGG - chr7_4:239841-239860 None:intergenic 30.0%
TGAAAGTGAAAAGAGAGAGA+AGG + chr7_4:238226-238245 Msa1133930:five_prime_UTR 35.0%
GAAAGTGAAAAGAGAGAGAA+GGG + chr7_4:238227-238246 Msa1133930:five_prime_UTR 35.0%
ACAACAAGTTCTTCATCAGT+TGG - chr7_4:238681-238700 None:intergenic 35.0%
TGTTCAATACTTGAAGCGTA+AGG + chr7_4:238698-238717 Msa1133930:CDS 35.0%
AAGATCAACTTCAGGAATGA+TGG - chr7_4:238748-238767 None:intergenic 35.0%
! GAAAAGAAAAGGTACATACC+AGG - chr7_4:238795-238814 None:intergenic 35.0%
TAGTACAAGTCATCATGTTC+CGG - chr7_4:238898-238917 None:intergenic 35.0%
AAAGAAGCCAAATACCCAAA+TGG + chr7_4:239002-239021 Msa1133930:CDS 35.0%
AAGAAGCCAAATACCCAAAT+GGG + chr7_4:239003-239022 Msa1133930:CDS 35.0%
! AGTTTGTAGCTCTGTTAGAT+CGG - chr7_4:239031-239050 None:intergenic 35.0%
TCAAAGAGTCATGAAGTTGT+TGG + chr7_4:239095-239114 Msa1133930:CDS 35.0%
AAGAAAGAAAGACTGACCAA+GGG - chr7_4:239221-239240 None:intergenic 35.0%
AAAGAAAGAAAGACTGACCA+AGG - chr7_4:239222-239241 None:intergenic 35.0%
! GGTGGTTTTCTATGATTTCT+TGG + chr7_4:239468-239487 Msa1133930:three_prime_UTR 35.0%
TTTCTATGATTTCTTGGCAC+AGG + chr7_4:239474-239493 Msa1133930:three_prime_UTR 35.0%
CAGTGGAATCACAAATGAAT+TGG + chr7_4:239537-239556 Msa1133930:three_prime_UTR 35.0%
CTAATAATAAAAGGAAGGGG+AGG - chr7_4:239642-239661 None:intergenic 35.0%
! CTCCCCTTCCTTTTATTATT+AGG + chr7_4:239640-239659 Msa1133930:three_prime_UTR 35.0%
ATCTCAAATGTCCCAAAATG+AGG + chr7_4:239691-239710 Msa1133930:three_prime_UTR 35.0%
ACAGAATCTCTTAAAAGGAG+GGG - chr7_4:239836-239855 None:intergenic 35.0%
GTGTATGTTTGATATCACTG+TGG + chr7_4:239858-239877 Msa1133930:three_prime_UTR 35.0%
TGAAAGTGAAAAGAGAGAGA+AGG + chr7_4:238226-238245 Msa1133930:five_prime_UTR 35.0%
GAAAGTGAAAAGAGAGAGAA+GGG + chr7_4:238227-238246 Msa1133930:five_prime_UTR 35.0%
ACAACAAGTTCTTCATCAGT+TGG - chr7_4:238681-238700 None:intergenic 35.0%
TGTTCAATACTTGAAGCGTA+AGG + chr7_4:238698-238717 Msa1133930:CDS 35.0%
AAGATCAACTTCAGGAATGA+TGG - chr7_4:238748-238767 None:intergenic 35.0%
! GAAAAGAAAAGGTACATACC+AGG - chr7_4:238795-238814 None:intergenic 35.0%
TAGTACAAGTCATCATGTTC+CGG - chr7_4:238898-238917 None:intergenic 35.0%
AAAGAAGCCAAATACCCAAA+TGG + chr7_4:239002-239021 Msa1133930:CDS 35.0%
AAGAAGCCAAATACCCAAAT+GGG + chr7_4:239003-239022 Msa1133930:CDS 35.0%
! AGTTTGTAGCTCTGTTAGAT+CGG - chr7_4:239031-239050 None:intergenic 35.0%
TCAAAGAGTCATGAAGTTGT+TGG + chr7_4:239095-239114 Msa1133930:CDS 35.0%
AAGAAAGAAAGACTGACCAA+GGG - chr7_4:239221-239240 None:intergenic 35.0%
AAAGAAAGAAAGACTGACCA+AGG - chr7_4:239222-239241 None:intergenic 35.0%
! GGTGGTTTTCTATGATTTCT+TGG + chr7_4:239468-239487 Msa1133930:three_prime_UTR 35.0%
TTTCTATGATTTCTTGGCAC+AGG + chr7_4:239474-239493 Msa1133930:three_prime_UTR 35.0%
CAGTGGAATCACAAATGAAT+TGG + chr7_4:239537-239556 Msa1133930:three_prime_UTR 35.0%
CTAATAATAAAAGGAAGGGG+AGG - chr7_4:239642-239661 None:intergenic 35.0%
! CTCCCCTTCCTTTTATTATT+AGG + chr7_4:239640-239659 Msa1133930:three_prime_UTR 35.0%
ATCTCAAATGTCCCAAAATG+AGG + chr7_4:239691-239710 Msa1133930:three_prime_UTR 35.0%
ACAGAATCTCTTAAAAGGAG+GGG - chr7_4:239836-239855 None:intergenic 35.0%
GTGTATGTTTGATATCACTG+TGG + chr7_4:239858-239877 Msa1133930:three_prime_UTR 35.0%
!! CGACATTTGTTTGAGTTGAG+TGG - chr7_4:238269-238288 None:intergenic 40.0%
GGTGAAGAAGGAAGAGAAAA+GGG - chr7_4:238439-238458 None:intergenic 40.0%
AGGTGAAGAAGGAAGAGAAA+AGG - chr7_4:238440-238459 None:intergenic 40.0%
CTTCATCAGTTGGATGGAAA+CGG - chr7_4:238671-238690 None:intergenic 40.0%
CAAGTTCTTCATCAGTTGGA+TGG - chr7_4:238677-238696 None:intergenic 40.0%
! GAATGATGGAAGCAGGTAAA+GGG - chr7_4:238734-238753 None:intergenic 40.0%
GACTTGCAAAGATCAACTTC+AGG - chr7_4:238756-238775 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG + chr7_4:238763-238782 Msa1133930:CDS 40.0%
TCTTTGCAAGTCTGATCCTT+GGG + chr7_4:238764-238783 Msa1133930:CDS 40.0%
TACATACCAGGTAAATCCCA+AGG - chr7_4:238783-238802 None:intergenic 40.0%
AGTACAAGTCATCATGTTCC+GGG - chr7_4:238897-238916 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG + chr7_4:238924-238943 Msa1133930:intron 40.0%
TAGGTGATATGGAACAAGAG+AGG + chr7_4:238964-238983 Msa1133930:intron 40.0%
! TGTTAGATCGGTTCCCATTT+GGG - chr7_4:239019-239038 None:intergenic 40.0%
TCTAACAGAGCTACAAACTC+TGG + chr7_4:239032-239051 Msa1133930:CDS 40.0%
CAATCAGTTCTTGAACCATG+AGG - chr7_4:239158-239177 None:intergenic 40.0%
CTCATGGTTCAAGAACTGAT+TGG + chr7_4:239156-239175 Msa1133930:CDS 40.0%
AGAAAGAAAGACTGACCAAG+GGG - chr7_4:239220-239239 None:intergenic 40.0%
! TTTGTCGCATATCTCTGAAG+AGG + chr7_4:239338-239357 Msa1133930:three_prime_UTR 40.0%
TTTCCAAAAGAGGATGAGGA+TGG - chr7_4:239598-239617 None:intergenic 40.0%
CAAATGTCCCAAAATGAGGT+CGG + chr7_4:239695-239714 Msa1133930:three_prime_UTR 40.0%
! CTTAATGCCGACCTCATTTT+GGG - chr7_4:239705-239724 None:intergenic 40.0%
! TCTTAATGCCGACCTCATTT+TGG - chr7_4:239706-239725 None:intergenic 40.0%
!! CGACATTTGTTTGAGTTGAG+TGG - chr7_4:238269-238288 None:intergenic 40.0%
GGTGAAGAAGGAAGAGAAAA+GGG - chr7_4:238439-238458 None:intergenic 40.0%
AGGTGAAGAAGGAAGAGAAA+AGG - chr7_4:238440-238459 None:intergenic 40.0%
CTTCATCAGTTGGATGGAAA+CGG - chr7_4:238671-238690 None:intergenic 40.0%
CAAGTTCTTCATCAGTTGGA+TGG - chr7_4:238677-238696 None:intergenic 40.0%
! GAATGATGGAAGCAGGTAAA+GGG - chr7_4:238734-238753 None:intergenic 40.0%
GACTTGCAAAGATCAACTTC+AGG - chr7_4:238756-238775 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG + chr7_4:238763-238782 Msa1133930:CDS 40.0%
TCTTTGCAAGTCTGATCCTT+GGG + chr7_4:238764-238783 Msa1133930:CDS 40.0%
TACATACCAGGTAAATCCCA+AGG - chr7_4:238783-238802 None:intergenic 40.0%
AGTACAAGTCATCATGTTCC+GGG - chr7_4:238897-238916 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG + chr7_4:238924-238943 Msa1133930:intron 40.0%
TAGGTGATATGGAACAAGAG+AGG + chr7_4:238964-238983 Msa1133930:intron 40.0%
! TGTTAGATCGGTTCCCATTT+GGG - chr7_4:239019-239038 None:intergenic 40.0%
TCTAACAGAGCTACAAACTC+TGG + chr7_4:239032-239051 Msa1133930:CDS 40.0%
CAATCAGTTCTTGAACCATG+AGG - chr7_4:239158-239177 None:intergenic 40.0%
CTCATGGTTCAAGAACTGAT+TGG + chr7_4:239156-239175 Msa1133930:CDS 40.0%
AGAAAGAAAGACTGACCAAG+GGG - chr7_4:239220-239239 None:intergenic 40.0%
! TTTGTCGCATATCTCTGAAG+AGG + chr7_4:239338-239357 Msa1133930:three_prime_UTR 40.0%
TTTCCAAAAGAGGATGAGGA+TGG - chr7_4:239598-239617 None:intergenic 40.0%
CAAATGTCCCAAAATGAGGT+CGG + chr7_4:239695-239714 Msa1133930:three_prime_UTR 40.0%
! CTTAATGCCGACCTCATTTT+GGG - chr7_4:239705-239724 None:intergenic 40.0%
! TCTTAATGCCGACCTCATTT+TGG - chr7_4:239706-239725 None:intergenic 40.0%
ATGGGTCAATGAGTCTGACA+AGG - chr7_4:238314-238333 None:intergenic 45.0%
GAAAGGAAAGGAAAAGGGCA+TGG - chr7_4:238373-238392 None:intergenic 45.0%
! GAACTTGTTTACCACACGAG+TGG + chr7_4:238539-238558 Msa1133930:five_prime_UTR 45.0%
AAATGTCAAAGCCACTCGTG+TGG - chr7_4:238553-238572 None:intergenic 45.0%
! GGAATGATGGAAGCAGGTAA+AGG - chr7_4:238735-238754 None:intergenic 45.0%
! ACTTCAGGAATGATGGAAGC+AGG - chr7_4:238741-238760 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG + chr7_4:238774-238793 Msa1133930:CDS 45.0%
GCACAGACAGACACAGATAT+CGG + chr7_4:238841-238860 Msa1133930:intron 45.0%
CACAGATATCGGACACAACA+TGG + chr7_4:238852-238871 Msa1133930:intron 45.0%
TCGGTTCCCATTTGGGTATT+TGG - chr7_4:239012-239031 None:intergenic 45.0%
! CTGTTAGATCGGTTCCCATT+TGG - chr7_4:239020-239039 None:intergenic 45.0%
GAGCTACAAACTCTGGTTAC+TGG + chr7_4:239039-239058 Msa1133930:CDS 45.0%
TCTGGTTACTGGAAAGCAAC+TGG + chr7_4:239050-239069 Msa1133930:CDS 45.0%
TCAGTTCTTGAACCATGAGG+TGG - chr7_4:239155-239174 None:intergenic 45.0%
! ATATCTCTGAAGAGGAGAGG+TGG + chr7_4:239346-239365 Msa1133930:three_prime_UTR 45.0%
! AGGAGAGGTGGTGCTAAAAA+TGG + chr7_4:239358-239377 Msa1133930:three_prime_UTR 45.0%
! AGGTGGTGCTAAAAATGGAG+AGG + chr7_4:239363-239382 Msa1133930:three_prime_UTR 45.0%
TTTGTGATTCCACTGCTAGC+TGG - chr7_4:239532-239551 None:intergenic 45.0%
! CTTCCATCCTCATCCTCTTT+TGG + chr7_4:239592-239611 Msa1133930:three_prime_UTR 45.0%
AATAAAAGGAAGGGGAGGGA+GGG - chr7_4:239637-239656 None:intergenic 45.0%
TAATAAAAGGAAGGGGAGGG+AGG - chr7_4:239638-239657 None:intergenic 45.0%
ACTGTGGTGTGTCACAATCA+TGG + chr7_4:239874-239893 Msa1133930:three_prime_UTR 45.0%
ATGGGTCAATGAGTCTGACA+AGG - chr7_4:238314-238333 None:intergenic 45.0%
GAAAGGAAAGGAAAAGGGCA+TGG - chr7_4:238373-238392 None:intergenic 45.0%
! GAACTTGTTTACCACACGAG+TGG + chr7_4:238539-238558 Msa1133930:five_prime_UTR 45.0%
AAATGTCAAAGCCACTCGTG+TGG - chr7_4:238553-238572 None:intergenic 45.0%
! GGAATGATGGAAGCAGGTAA+AGG - chr7_4:238735-238754 None:intergenic 45.0%
! ACTTCAGGAATGATGGAAGC+AGG - chr7_4:238741-238760 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG + chr7_4:238774-238793 Msa1133930:CDS 45.0%
GCACAGACAGACACAGATAT+CGG + chr7_4:238841-238860 Msa1133930:intron 45.0%
CACAGATATCGGACACAACA+TGG + chr7_4:238852-238871 Msa1133930:intron 45.0%
TCGGTTCCCATTTGGGTATT+TGG - chr7_4:239012-239031 None:intergenic 45.0%
! CTGTTAGATCGGTTCCCATT+TGG - chr7_4:239020-239039 None:intergenic 45.0%
GAGCTACAAACTCTGGTTAC+TGG + chr7_4:239039-239058 Msa1133930:CDS 45.0%
TCTGGTTACTGGAAAGCAAC+TGG + chr7_4:239050-239069 Msa1133930:CDS 45.0%
TCAGTTCTTGAACCATGAGG+TGG - chr7_4:239155-239174 None:intergenic 45.0%
! ATATCTCTGAAGAGGAGAGG+TGG + chr7_4:239346-239365 Msa1133930:three_prime_UTR 45.0%
! AGGAGAGGTGGTGCTAAAAA+TGG + chr7_4:239358-239377 Msa1133930:three_prime_UTR 45.0%
! AGGTGGTGCTAAAAATGGAG+AGG + chr7_4:239363-239382 Msa1133930:three_prime_UTR 45.0%
TTTGTGATTCCACTGCTAGC+TGG - chr7_4:239532-239551 None:intergenic 45.0%
! CTTCCATCCTCATCCTCTTT+TGG + chr7_4:239592-239611 Msa1133930:three_prime_UTR 45.0%
AATAAAAGGAAGGGGAGGGA+GGG - chr7_4:239637-239656 None:intergenic 45.0%
TAATAAAAGGAAGGGGAGGG+AGG - chr7_4:239638-239657 None:intergenic 45.0%
ACTGTGGTGTGTCACAATCA+TGG + chr7_4:239874-239893 Msa1133930:three_prime_UTR 45.0%
GTTGGATGGAAACGGAAACC+TGG - chr7_4:238663-238682 None:intergenic 50.0%
TACAGAGGCAAACCACCTCA+TGG + chr7_4:239140-239159 Msa1133930:CDS 50.0%
AGAAAGACTGACCAAGGGGT+TGG - chr7_4:239216-239235 None:intergenic 50.0%
! CGCATATCTCTGAAGAGGAG+AGG + chr7_4:239343-239362 Msa1133930:three_prime_UTR 50.0%
CCAAAGTTGCTGCAACTGCT+TGG - chr7_4:239400-239419 None:intergenic 50.0%
CCAAGCAGTTGCAGCAACTT+TGG + chr7_4:239397-239416 Msa1133930:three_prime_UTR 50.0%
CAGTTGCAGCAACTTTGGTG+AGG + chr7_4:239402-239421 Msa1133930:three_prime_UTR 50.0%
ATAAAAGGAAGGGGAGGGAG+GGG - chr7_4:239636-239655 None:intergenic 50.0%
GTTGGATGGAAACGGAAACC+TGG - chr7_4:238663-238682 None:intergenic 50.0%
TACAGAGGCAAACCACCTCA+TGG + chr7_4:239140-239159 Msa1133930:CDS 50.0%
AGAAAGACTGACCAAGGGGT+TGG - chr7_4:239216-239235 None:intergenic 50.0%
! CGCATATCTCTGAAGAGGAG+AGG + chr7_4:239343-239362 Msa1133930:three_prime_UTR 50.0%
CCAAAGTTGCTGCAACTGCT+TGG - chr7_4:239400-239419 None:intergenic 50.0%
CCAAGCAGTTGCAGCAACTT+TGG + chr7_4:239397-239416 Msa1133930:three_prime_UTR 50.0%
CAGTTGCAGCAACTTTGGTG+AGG + chr7_4:239402-239421 Msa1133930:three_prime_UTR 50.0%
ATAAAAGGAAGGGGAGGGAG+GGG - chr7_4:239636-239655 None:intergenic 50.0%
GGTGAAGTGAGATTGCCACC+AGG + chr7_4:238642-238661 Msa1133930:CDS 55.0%
GGATGGAAACGGAAACCTGG+TGG - chr7_4:238660-238679 None:intergenic 55.0%
CACTGACACGTTCAGACACC+CGG + chr7_4:238876-238895 Msa1133930:intron 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG - chr7_4:239199-239218 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG + chr7_4:239202-239221 Msa1133930:CDS 55.0%
GATTCCACTGCTAGCTGGTG+AGG - chr7_4:239527-239546 None:intergenic 55.0%
TAAAAGGAAGGGGAGGGAGG+GGG - chr7_4:239635-239654 None:intergenic 55.0%
GGTGAAGTGAGATTGCCACC+AGG + chr7_4:238642-238661 Msa1133930:CDS 55.0%
GGATGGAAACGGAAACCTGG+TGG - chr7_4:238660-238679 None:intergenic 55.0%
CACTGACACGTTCAGACACC+CGG + chr7_4:238876-238895 Msa1133930:intron 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG - chr7_4:239199-239218 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG + chr7_4:239202-239221 Msa1133930:CDS 55.0%
GATTCCACTGCTAGCTGGTG+AGG - chr7_4:239527-239546 None:intergenic 55.0%
TAAAAGGAAGGGGAGGGAGG+GGG - chr7_4:239635-239654 None:intergenic 55.0%
GACCAAGGGGTTGGAGTGAG+AGG - chr7_4:239207-239226 None:intergenic 60.0%
ACTGCTAGCTGGTGAGGAGG+AGG - chr7_4:239521-239540 None:intergenic 60.0%
TCCTCCTCACCAGCTAGCAG+TGG + chr7_4:239520-239539 Msa1133930:three_prime_UTR 60.0%
TCCACTGCTAGCTGGTGAGG+AGG - chr7_4:239524-239543 None:intergenic 60.0%
GACCAAGGGGTTGGAGTGAG+AGG - chr7_4:239207-239226 None:intergenic 60.0%
ACTGCTAGCTGGTGAGGAGG+AGG - chr7_4:239521-239540 None:intergenic 60.0%
TCCTCCTCACCAGCTAGCAG+TGG + chr7_4:239520-239539 Msa1133930:three_prime_UTR 60.0%
TCCACTGCTAGCTGGTGAGG+AGG - chr7_4:239524-239543 None:intergenic 60.0%
AAGGAAGGGGAGGGAGGGGG+TGG - chr7_4:239632-239651 None:intergenic 70.0%
AAGGAAGGGGAGGGAGGGGG+TGG - chr7_4:239632-239651 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 238222 239972 238222 ID=Msa1133930;Name=Msa1133930
chr7_4 mRNA 238222 239972 238222 ID=Msa1133930-mRNA-1;Parent=Msa1133930;Name=Msa1133930-mRNA-1;_AED=0.05;_eAED=0.05;_QI=390|1|1|1|1|1|2|725|154
chr7_4 exon 238222 238795 238222 ID=Msa1133930-mRNA-1:exon:53;Parent=Msa1133930-mRNA-1
chr7_4 exon 238967 239972 238967 ID=Msa1133930-mRNA-1:exon:54;Parent=Msa1133930-mRNA-1
chr7_4 five_prime_UTR 238222 238611 238222 ID=Msa1133930-mRNA-1:five_prime_utr;Parent=Msa1133930-mRNA-1
chr7_4 CDS 238612 238795 238612 ID=Msa1133930-mRNA-1:cds;Parent=Msa1133930-mRNA-1
chr7_4 CDS 238967 239247 238967 ID=Msa1133930-mRNA-1:cds;Parent=Msa1133930-mRNA-1
chr7_4 three_prime_UTR 239248 239972 239248 ID=Msa1133930-mRNA-1:three_prime_utr;Parent=Msa1133930-mRNA-1
Gene Sequence

>Msa1133930

ATGGAGAAGATGAATTTTGTGAAGAAGAATGGTGAAGTGAGATTGCCACCAGGTTTCCGTTTCCATCCAACTGATGAAGAACTTGTTGTTCAATACTTGAAGCGTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTGATATGGAACAAGAGAGGTACTTTTTCAGTACTAAAGAAGCCAAATACCCAAATGGGAACCGATCTAACAGAGCTACAAACTCTGGTTACTGGAAAGCAACTGGTTTAGACAAACAAATCATGAATTCAAAGAGTCATGAAGTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGGTCAGTCTTTCTTTCTTTCTCTGA
Protein sequence

>Msa1133930

MEKMNFVKKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSFPLPASIIPEVDLCKSDPWDLPGDMEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIMNSKSHEVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLVSLSFFL*