AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1134860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134860 MtrunA17_Chr7g0223971 82.239 518 52 2 52 529 1 518 0.0 797
Msa1134860 MtrunA17_Chr7g0223991 76.056 213 31 3 200 410 24 218 1.26e-101 305
Msa1134860 MtrunA17_Chr6g0473731 44.601 426 171 12 50 457 10 388 4.44e-94 293
Msa1134860 MtrunA17_Chr4g0067981 37.681 207 104 3 6 189 67 271 5.53e-39 151
Msa1134860 MtrunA17_Chr1g0161431 34.440 241 126 6 2 211 43 282 3.86e-38 148
Msa1134860 MtrunA17_Chr2g0294911 34.466 206 116 1 3 189 62 267 4.08e-38 147
Msa1134860 MtrunA17_Chr1g0149841 35.514 214 115 2 1 191 36 249 9.62e-37 142
Msa1134860 MtrunA17_Chr8g0376881 34.052 232 128 4 1 207 56 287 1.66e-35 139
Msa1134860 MtrunA17_Chr3g0123131 32.157 255 138 4 6 228 49 300 2.91e-35 139
Msa1134860 MtrunA17_Chr3g0137101 34.061 229 102 3 1 191 39 256 7.27e-35 139
Msa1134860 MtrunA17_Chr4g0009851 31.022 274 166 7 13 277 53 312 1.63e-34 132
Msa1134860 MtrunA17_Chr4g0009981 29.478 268 174 5 15 277 2 259 2.26e-34 130
Msa1134860 MtrunA17_Chr4g0009901 36.702 188 111 2 2 189 45 224 6.58e-34 129
Msa1134860 MtrunA17_Chr7g0275401 35.211 213 114 3 1 189 36 248 2.70e-32 125
Msa1134860 MtrunA17_Chr6g0471041 37.313 201 109 5 1 195 45 234 9.77e-32 127
Msa1134860 MtrunA17_Chr7g0275891 32.159 227 118 4 1 191 36 262 2.80e-31 124
Msa1134860 MtrunA17_Chr2g0304841 32.766 235 122 4 1 200 49 282 1.85e-30 125
Msa1134860 MtrunA17_Chr3g0134481 33.880 183 82 2 2 184 40 183 2.34e-30 117
Msa1134860 MtrunA17_Chr4g0074411 32.719 217 126 3 1 197 49 265 2.41e-29 122
Msa1134860 MtrunA17_Chr1g0149851 32.599 227 115 3 1 189 36 262 8.31e-29 120
Msa1134860 MtrunA17_Chr3g0134461 35.714 182 87 3 2 182 40 192 9.76e-29 112
Msa1134860 MtrunA17_Chr4g0074401 32.883 222 126 3 1 199 48 269 2.28e-27 116
Msa1134860 MtrunA17_Chr4g0074421 35.294 187 103 3 19 187 1 187 2.20e-26 106
Msa1134860 MtrunA17_Chr1g0149831 34.574 188 89 4 27 191 7 183 1.79e-24 102
Msa1134860 MtrunA17_Chr4g0009991 37.705 122 67 2 63 182 2 116 1.96e-20 87.0
Msa1134860 MtrunA17_Chr4g0031961 42.857 112 48 4 110 211 101 206 9.25e-19 87.4
Msa1134860 MtrunA17_Chr7g0255711 49.296 71 36 0 122 192 80 150 3.11e-18 85.5
Msa1134860 MtrunA17_Chr8g0391911 28.780 205 114 6 20 197 58 257 1.77e-16 79.3
Msa1134860 MtrunA17_Chr4g0011071 29.252 147 92 3 17 159 36 174 3.61e-16 76.6
Msa1134860 MtrunA17_Chr4g0040481 61.111 54 21 0 132 185 157 210 6.45e-15 77.0
Msa1134860 MtrunA17_Chr2g0324891 47.619 84 43 1 102 185 131 213 1.04e-14 76.3
Msa1134860 MtrunA17_Chr5g0400241 53.333 60 28 0 132 191 310 369 6.08e-14 74.3
Msa1134860 MtrunA17_Chr4g0054981 50.794 63 31 0 132 194 309 371 7.04e-14 74.3
Msa1134860 MtrunA17_Chr8g0383961 28.272 191 101 6 2 189 46 203 2.40e-12 67.4
Msa1134860 MtrunA17_Chr6g0469321 62.791 43 16 0 149 191 70 112 6.32e-12 64.3
Msa1134860 MtrunA17_Chr5g0417521 54.545 55 24 1 133 186 15 69 1.13e-11 66.2
Msa1134860 MtrunA17_Chr6g0461641 54.545 55 24 1 133 186 42 96 1.36e-11 66.6
Msa1134860 MtrunA17_Chr2g0321461 50.909 55 26 1 133 186 45 99 7.74e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134860 AT3G16857.3 34.008 247 114 4 9 212 2 242 3.72e-40 154
Msa1134860 AT3G16857.1 34.000 250 116 4 6 212 69 312 5.88e-40 154
Msa1134860 AT3G16857.2 34.000 250 116 4 6 212 69 312 7.16e-40 154
Msa1134860 AT5G07210.2 36.047 258 114 7 1 209 43 298 1.01e-37 147
Msa1134860 AT5G07210.1 36.047 258 114 7 1 209 51 306 1.31e-37 147
Msa1134860 AT2G01760.1 33.645 214 106 4 9 189 46 256 4.48e-34 133
Msa1134860 AT2G25180.1 36.667 210 114 3 1 191 44 253 5.88e-34 136
Msa1134860 AT2G01760.2 33.645 214 106 4 9 189 74 284 1.64e-33 132
Msa1134860 AT4G31920.1 36.893 206 117 3 1 196 44 246 5.63e-33 132
Msa1134860 AT2G27070.1 35.135 259 116 8 1 209 45 301 5.64e-32 130
Msa1134860 AT5G58080.1 35.238 210 111 5 5 193 49 254 3.94e-30 125
Msa1134860 AT1G67710.1 33.772 228 123 4 1 200 38 265 4.36e-30 124
Msa1134860 AT2G01760.3 32.474 194 95 4 29 189 1 191 2.49e-28 115
Msa1134860 AT3G62670.1 34.359 195 110 5 9 185 74 268 3.98e-25 108
Msa1134860 AT1G67710.2 34.010 197 102 4 32 200 4 200 5.42e-25 108
Msa1134860 AT5G49240.1 31.633 196 112 3 9 182 77 272 9.11e-24 102
Msa1134860 AT1G49190.1 31.628 215 115 5 5 190 65 276 3.49e-22 99.4
Msa1134860 AT1G67710.3 34.444 180 90 4 49 200 12 191 8.99e-21 95.5
Msa1134860 AT3G10760.1 47.887 71 37 0 122 192 94 164 2.27e-18 87.0
Msa1134860 AT5G05090.1 49.275 69 35 0 121 189 69 137 4.72e-18 84.7
Msa1134860 AT2G40970.1 50.725 69 34 0 124 192 96 164 4.90e-18 84.3
Msa1134860 AT5G59570.2 38.261 115 58 3 89 192 88 200 5.99e-18 85.1
Msa1134860 AT5G59570.1 38.261 115 58 3 89 192 88 200 5.99e-18 85.1
Msa1134860 AT3G46640.2 49.296 71 34 1 124 192 133 203 7.20e-18 85.1
Msa1134860 AT3G46640.1 49.296 71 34 1 124 192 133 203 7.20e-18 85.1
Msa1134860 AT3G46640.3 49.296 71 34 1 124 192 133 203 1.20e-17 84.7
Msa1134860 AT5G44190.1 62.295 61 21 1 125 185 141 199 1.72e-16 82.0
Msa1134860 AT5G44190.2 62.295 61 21 1 125 185 141 199 1.79e-16 81.3
Msa1134860 AT2G20570.1 59.259 54 22 0 132 185 152 205 3.34e-14 75.1
Msa1134860 AT4G18020.8 36.975 119 64 3 89 207 260 367 5.72e-14 74.7
Msa1134860 AT4G18020.11 36.975 119 64 3 89 207 260 367 5.72e-14 74.7
Msa1134860 AT4G18020.4 36.975 119 64 3 89 207 260 367 5.72e-14 74.7
Msa1134860 AT4G18020.5 36.975 119 64 3 89 207 260 367 5.72e-14 74.7
Msa1134860 AT4G18020.10 36.975 119 64 3 89 207 260 367 5.72e-14 74.7
Msa1134860 AT4G18020.7 36.975 119 64 3 89 207 260 367 5.72e-14 74.7
Msa1134860 AT4G18020.3 36.975 119 64 3 89 207 260 367 7.97e-14 74.3
Msa1134860 AT4G18020.2 36.975 119 64 3 89 207 260 367 7.97e-14 74.3
Msa1134860 AT4G18020.1 36.975 119 64 3 89 207 260 367 7.97e-14 74.3
Msa1134860 AT4G18020.6 36.975 119 64 3 89 207 260 367 7.97e-14 74.3
Msa1134860 AT4G18020.9 36.975 119 64 3 89 207 260 367 7.97e-14 74.3
Msa1134860 AT2G20570.2 60.784 51 20 0 135 185 171 221 1.79e-13 72.8
Msa1134860 AT3G04450.3 52.632 57 26 1 130 185 235 291 1.25e-11 66.2
Msa1134860 AT3G04450.1 46.479 71 31 2 130 193 235 305 2.02e-11 66.6
Msa1134860 AT3G04450.4 46.479 71 31 2 130 193 195 265 2.04e-11 66.2
Msa1134860 AT3G04450.2 46.479 71 31 2 130 193 195 265 2.04e-11 66.2
Msa1134860 AT1G49190.2 27.820 133 89 2 5 137 65 190 2.37e-11 66.6
Msa1134860 AT5G29000.4 44.286 70 38 1 130 198 228 297 3.32e-11 65.1
Msa1134860 AT5G29000.1 40.506 79 46 1 130 207 185 263 3.69e-11 65.5
Msa1134860 AT5G29000.3 40.506 79 46 1 130 207 185 263 3.69e-11 65.5
Msa1134860 AT5G29000.2 40.506 79 46 1 130 207 228 306 3.69e-11 65.5
Msa1134860 AT3G04030.1 52.727 55 25 1 133 186 45 99 4.52e-11 65.1
Msa1134860 AT3G04030.3 52.727 55 25 1 133 186 45 99 4.68e-11 65.1

Find 85 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATTCTATTTCTGATATT+AGG 0.142363 7_4:-1528029 Msa1134860:CDS
CTGAAGACTTCAAAGATATT+TGG 0.172247 7_4:-1529462 Msa1134860:CDS
GTAAGAAACAATAACCATTT+TGG 0.206140 7_4:-1528228 Msa1134860:CDS
AAATTCTAACTTTGGATCTT+TGG 0.211667 7_4:-1528289 Msa1134860:CDS
GAACTATGAATAATGGATTA+AGG 0.228641 7_4:-1528167 Msa1134860:CDS
CAATTCCCTTACATACAAAA+AGG 0.229371 7_4:-1528585 Msa1134860:CDS
ACTTACTTTCCAATCCAATT+TGG 0.246719 7_4:+1529224 None:intergenic
CTGCTTGCTATTAACCAAAT+TGG 0.262572 7_4:-1529238 Msa1134860:CDS
GGATTCTATTTCTGATATTA+GGG 0.272190 7_4:-1528028 Msa1134860:CDS
AACTTGTGAGGCATAATATT+AGG 0.274422 7_4:+1528261 None:intergenic
AAATGTAGCAAGTCACTTAC+AGG 0.277878 7_4:-1529021 Msa1134860:intron
ATGACACACTTACTTATTAT+AGG 0.282733 7_4:+1530360 None:intergenic
CAAAGCATGACGAGCATCTT+TGG 0.288698 7_4:+1530494 None:intergenic
TTTGGAATTCAGCTGAATAA+TGG 0.297513 7_4:-1528210 Msa1134860:CDS
CAACATGATGCGTTGGAAAT+TGG 0.299414 7_4:+1528610 None:intergenic
ACTTACTTATTATAGGTATC+TGG 0.300133 7_4:+1530367 None:intergenic
TATTCAGCTGAATTCCAAAA+TGG 0.301790 7_4:+1528214 None:intergenic
TTAAGAAACAAAAGCTTGTT+TGG 0.309580 7_4:-1529285 Msa1134860:CDS
GGAATTGGAACTATGAATAA+TGG 0.315352 7_4:-1528174 Msa1134860:CDS
TTGAAGTCTTCAGCACAAAA+AGG 0.324880 7_4:+1529472 None:intergenic
ATCTCAAAGACACTAGAAAA+TGG 0.331289 7_4:-1529517 Msa1134860:CDS
TTTACTCAACGTGACTTAGA+TGG 0.347030 7_4:-1527937 Msa1134860:CDS
TTCAAGATTGGGAACAAGTT+AGG 0.352069 7_4:-1528554 Msa1134860:CDS
AGATATTTGGAAATATGTTA+TGG 0.355548 7_4:-1529449 Msa1134860:CDS
GGCTGTTCCAAAGAAAATTC+TGG 0.359742 7_4:-1529075 Msa1134860:CDS
AACTATGAATAATGGATTAA+GGG 0.363152 7_4:-1528166 Msa1134860:CDS
TTTCATCTGGTGGGAATCAA+TGG 0.369590 7_4:-1530423 Msa1134860:CDS
AAGGGTTGGCTCTTCAAGAT+TGG 0.372343 7_4:-1528566 Msa1134860:CDS
ACTTGTGAGGCATAATATTA+GGG 0.374491 7_4:+1528262 None:intergenic
GGAGCAGAAATGGTTGGAAT+TGG 0.379114 7_4:-1528189 Msa1134860:CDS
TGCTATTAACCAAATTGGAT+TGG 0.390260 7_4:-1529233 Msa1134860:CDS
CGTTATTGCAGAATTTCATC+TGG 0.397811 7_4:-1530436 Msa1134860:CDS
GGCCATGGTCAAAACAGGTT+TGG 0.410656 7_4:-1528486 Msa1134860:CDS
TAGAGGAGAACAAGGATTGA+TGG 0.421210 7_4:-1528385 Msa1134860:CDS
CTACTTTCACTAATGAGGTT+GGG 0.423849 7_4:-1527879 Msa1134860:CDS
ATCACTCTTCAAGAAAATGA+AGG 0.424779 7_4:-1530471 Msa1134860:CDS
GCTGAATAATGGAGCAGAAA+TGG 0.428747 7_4:-1528199 Msa1134860:CDS
CTGCGAGATGTTGAAGAGAA+AGG 0.429447 7_4:-1528813 Msa1134860:CDS
CAGTGATGTCTGAAGACAAT+AGG 0.437039 7_4:-1529549 Msa1134860:CDS
AGGGTTGGCTCTTCAAGATT+GGG 0.442206 7_4:-1528565 Msa1134860:CDS
GCGTTGGAAATTGGTTGAAA+TGG 0.443167 7_4:+1528619 None:intergenic
ATAATGGCCATGGTCAAAAC+AGG 0.444362 7_4:-1528491 Msa1134860:CDS
CTTCTTCAAGTTTGTTAACA+AGG 0.448083 7_4:-1528356 Msa1134860:CDS
GCTACTTTCACTAATGAGGT+TGG 0.473474 7_4:-1527880 Msa1134860:CDS
GGTTCAAGGAGGGTTTGCTC+TGG 0.484414 7_4:-1528049 Msa1134860:CDS
GCAGGATCAGTTAATAATGA+AGG 0.491730 7_4:-1527982 Msa1134860:CDS
TTCATCTGGTGGGAATCAAT+GGG 0.491841 7_4:-1530422 Msa1134860:CDS
AGTGTCTTTGAGATTAAACT+TGG 0.491853 7_4:+1529526 None:intergenic
GTTGAAGAGAAAGGAATGGT+TGG 0.491902 7_4:-1528804 Msa1134860:CDS
TCTGATATTAGGGGAGGGAG+TGG 0.493957 7_4:-1528018 Msa1134860:CDS
CTTGAATATCTCTCTCTCCT+TGG 0.495918 7_4:+1529311 None:intergenic
GATTGGGAACAAGTTAGGCT+TGG 0.497594 7_4:-1528549 Msa1134860:CDS
TAGTGCTACTTTCACTAATG+AGG 0.497764 7_4:-1527884 Msa1134860:CDS
TAGGCTTGGAAAATCAAAGT+TGG 0.508790 7_4:-1528535 Msa1134860:CDS
ATTTCTCTGATCACAGAACT+TGG 0.510262 7_4:+1528735 None:intergenic
GATGTTGTTGCGGAGAATAA+TGG 0.517615 7_4:-1528507 Msa1134860:CDS
ATTGCAGAATTTCATCTGGT+GGG 0.533922 7_4:-1530432 Msa1134860:CDS
TTCTTCAAGTTTGTTAACAA+GGG 0.536372 7_4:-1528355 Msa1134860:CDS
ACTTCAATATTTGCAAACAC+TGG 0.542849 7_4:-1528676 Msa1134860:CDS
AGTGGAAGAAAGTTTCTAGC+AGG 0.545083 7_4:-1528000 Msa1134860:CDS
AGCTAGTGGAAGCACCATCA+TGG 0.545478 7_4:+1528418 None:intergenic
GACTTAGATGGAAATGTTGT+GGG 0.546520 7_4:-1527925 Msa1134860:CDS
TATTGCAGAATTTCATCTGG+TGG 0.554479 7_4:-1530433 Msa1134860:CDS
AATAATGGAGCAGAAATGGT+TGG 0.555811 7_4:-1528195 Msa1134860:CDS
CTATTTCTGATATTAGGGGA+GGG 0.562145 7_4:-1528023 Msa1134860:CDS
TCTATATGATGAAAAGCTAG+TGG 0.562508 7_4:+1528404 None:intergenic
AATTTGGTTTGGTTCAAGGA+GGG 0.563542 7_4:-1528059 Msa1134860:CDS
GAAGAGAAAGGAATGGTTGG+AGG 0.566539 7_4:-1528801 Msa1134860:CDS
GTTTGCAAATATTGAAGTGT+TGG 0.578096 7_4:+1528681 None:intergenic
AATTGGCCAACATGATGCGT+TGG 0.583725 7_4:+1528603 None:intergenic
TCTATTTCTGATATTAGGGG+AGG 0.587568 7_4:-1528024 Msa1134860:CDS
AAATTTGGTTTGGTTCAAGG+AGG 0.591953 7_4:-1528060 Msa1134860:CDS
TCATCATATAGAGGAGAACA+AGG 0.594028 7_4:-1528393 Msa1134860:CDS
GACATTAGAAACCAGACTCA+TGG 0.599860 7_4:-1528318 Msa1134860:CDS
GATTCTATTTCTGATATTAG+GGG 0.603781 7_4:-1528027 Msa1134860:CDS
AGAAAGAGTAAAGAATGCCA+AGG 0.604346 7_4:-1529328 Msa1134860:CDS
CAATTTCCAACGCATCATGT+TGG 0.607673 7_4:-1528609 Msa1134860:CDS
TGACTTAGATGGAAATGTTG+TGG 0.614635 7_4:-1527926 Msa1134860:CDS
GTTGGAAGCTGATGTTGTTG+CGG 0.645784 7_4:-1528517 Msa1134860:CDS
AAAGTCTTCATACCTTGTTG+CGG 0.645913 7_4:+1527800 None:intergenic
TGACAAGAATCTCCGCAACA+AGG 0.646714 7_4:-1527812 Msa1134860:CDS
ACACTGGCATATCAAACAAG+AGG 0.654807 7_4:-1528660 Msa1134860:CDS
AGATGTTGAAGAGAAAGGAA+TGG 0.660542 7_4:-1528808 Msa1134860:CDS
ACATCAGAAGTAAACTTGTG+AGG 0.669577 7_4:+1528249 None:intergenic
GTTGCGGAGAATAATGGCCA+TGG 0.690083 7_4:-1528501 Msa1134860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATATTTTTCTTATGAA+AGG - chr7_4:1529118-1529137 Msa1134860:intron 10.0%
!!! TATAATATTTTTGTGTCATT+TGG - chr7_4:1528279-1528298 Msa1134860:CDS 15.0%
!! TAATAAAGTTTAATATAACG+TGG - chr7_4:1528481-1528500 Msa1134860:CDS 15.0%
!! TATAAACAACTTTAATAAGT+TGG - chr7_4:1528520-1528539 Msa1134860:CDS 15.0%
!!! AACTGGATTTCTAAAATAAA+TGG + chr7_4:1528126-1528145 None:intergenic 20.0%
!!! TATTTTTCATGAAAATCGTA+AGG + chr7_4:1528163-1528182 None:intergenic 20.0%
!!! TCATTAACTCTTTAAAAATG+TGG - chr7_4:1528238-1528257 Msa1134860:CDS 20.0%
!!! TTAAAAATGTGGTCAAATTT+TGG - chr7_4:1528249-1528268 Msa1134860:CDS 20.0%
!! AGATATTTGGAAATATGTTA+TGG - chr7_4:1528862-1528881 Msa1134860:intron 20.0%
!!! TTAACAAGGGATTTTAAATT+TGG - chr7_4:1529969-1529988 Msa1134860:intron 20.0%
!!! AACTATGAATAATGGATTAA+GGG - chr7_4:1530145-1530164 Msa1134860:intron 20.0%
!!! TCTTTTGTGAATGAAAAATT+TGG - chr7_4:1530236-1530255 Msa1134860:intron 20.0%
!!! CAACAATTTTGATTACTTAA+TGG - chr7_4:1530472-1530491 Msa1134860:CDS 20.0%
! ACTTACTTATTATAGGTATC+TGG + chr7_4:1527947-1527966 None:intergenic 25.0%
! ATGACACACTTACTTATTAT+AGG + chr7_4:1527954-1527973 None:intergenic 25.0%
! AACAAGTAAGCATTAAAAAC+TGG + chr7_4:1528031-1528050 None:intergenic 25.0%
! TTATTATGCAAACATGCTTA+AGG - chr7_4:1528050-1528069 Msa1134860:CDS 25.0%
! AGGTTAAGATAATAAAGAAC+TGG + chr7_4:1528143-1528162 None:intergenic 25.0%
!! TGTCATTTGGATAGATAATT+TGG - chr7_4:1528292-1528311 Msa1134860:CDS 25.0%
!!! AGACATTATTTGTGTCATTT+TGG - chr7_4:1528392-1528411 Msa1134860:CDS 25.0%
!! TTAAGAAACAAAAGCTTGTT+TGG - chr7_4:1529026-1529045 Msa1134860:CDS 25.0%
!! TTATATTTTCCCTAATTCAG+AGG - chr7_4:1529215-1529234 Msa1134860:intron 25.0%
! AATTCCCTTACATACAAAAA+GGG - chr7_4:1529727-1529746 Msa1134860:intron 25.0%
!! TTTTTGCTTGAAAAAATGGA+AGG + chr7_4:1529866-1529885 None:intergenic 25.0%
!!! GAGTTTTTTGCTTGAAAAAA+TGG + chr7_4:1529870-1529889 None:intergenic 25.0%
!!! TTCTTCAAGTTTGTTAACAA+GGG - chr7_4:1529956-1529975 Msa1134860:intron 25.0%
! GGTGTTAAAAATTCTAACTT+TGG - chr7_4:1530014-1530033 Msa1134860:intron 25.0%
! AAATTCTAACTTTGGATCTT+TGG - chr7_4:1530022-1530041 Msa1134860:intron 25.0%
!! GTAAGAAACAATAACCATTT+TGG - chr7_4:1530083-1530102 Msa1134860:intron 25.0%
!!! GAACTATGAATAATGGATTA+AGG - chr7_4:1530144-1530163 Msa1134860:intron 25.0%
! TGTGAATGAAAAATTTGGTT+TGG - chr7_4:1530241-1530260 Msa1134860:intron 25.0%
!!! TGGATTCTATTTCTGATATT+AGG - chr7_4:1530282-1530301 Msa1134860:intron 25.0%
!!! GGATTCTATTTCTGATATTA+GGG - chr7_4:1530283-1530302 Msa1134860:intron 25.0%
!!! GATTCTATTTCTGATATTAG+GGG - chr7_4:1530284-1530303 Msa1134860:intron 25.0%
ATCACTCTTCAAGAAAATGA+AGG - chr7_4:1527840-1527859 Msa1134860:CDS 30.0%
TTTAGTGCACCTATCAATTT+AGG + chr7_4:1528085-1528104 None:intergenic 30.0%
AAGAAGCTTAAAGAACTGTA+TGG + chr7_4:1528631-1528650 None:intergenic 30.0%
TGCATAAGAACTAAAGTAGT+GGG + chr7_4:1528707-1528726 None:intergenic 30.0%
ATGCATAAGAACTAAAGTAG+TGG + chr7_4:1528708-1528727 None:intergenic 30.0%
!! AGTGTCTTTGAGATTAAACT+TGG + chr7_4:1528788-1528807 None:intergenic 30.0%
ATCTCAAAGACACTAGAAAA+TGG - chr7_4:1528794-1528813 Msa1134860:CDS 30.0%
CTGAAGACTTCAAAGATATT+TGG - chr7_4:1528849-1528868 Msa1134860:intron 30.0%
! CAATGCTTCTTTTTGTTCTT+AGG + chr7_4:1528959-1528978 None:intergenic 30.0%
! AGAAACATTTTGTGCAGATA+AGG + chr7_4:1529055-1529074 None:intergenic 30.0%
TGCTATTAACCAAATTGGAT+TGG - chr7_4:1529078-1529097 Msa1134860:CDS 30.0%
ACTTACTTTCCAATCCAATT+TGG + chr7_4:1529090-1529109 None:intergenic 30.0%
! ATGATCTCCAGAATTTTCTT+TGG + chr7_4:1529246-1529265 None:intergenic 30.0%
AAGACAACGACAAAAATTAG+TGG + chr7_4:1529402-1529421 None:intergenic 30.0%
! ATAAGATCAAGTTTTGCATC+AGG - chr7_4:1529549-1529568 Msa1134860:CDS 30.0%
TCAGAGAAATCGAAGAAAAA+AGG - chr7_4:1529589-1529608 Msa1134860:intron 30.0%
GTTTGCAAATATTGAAGTGT+TGG + chr7_4:1529633-1529652 None:intergenic 30.0%
ACTTCAATATTTGCAAACAC+TGG - chr7_4:1529635-1529654 Msa1134860:intron 30.0%
! CTTTTTGTATGTAAGGGAAT+TGG + chr7_4:1529728-1529747 None:intergenic 30.0%
CAATTCCCTTACATACAAAA+AGG - chr7_4:1529726-1529745 Msa1134860:intron 30.0%
TCTATATGATGAAAAGCTAG+TGG + chr7_4:1529910-1529929 None:intergenic 30.0%
!!! ACTAGCTTTTCATCATATAG+AGG - chr7_4:1529909-1529928 Msa1134860:intron 30.0%
!! CTTCTTCAAGTTTGTTAACA+AGG - chr7_4:1529955-1529974 Msa1134860:intron 30.0%
! AATTTTTAACACCATGAGTC+TGG + chr7_4:1530007-1530026 None:intergenic 30.0%
ACTTGTGAGGCATAATATTA+GGG + chr7_4:1530052-1530071 None:intergenic 30.0%
AACTTGTGAGGCATAATATT+AGG + chr7_4:1530053-1530072 None:intergenic 30.0%
TATTCAGCTGAATTCCAAAA+TGG + chr7_4:1530100-1530119 None:intergenic 30.0%
! TTTGGAATTCAGCTGAATAA+TGG - chr7_4:1530101-1530120 Msa1134860:intron 30.0%
GGAATTGGAACTATGAATAA+TGG - chr7_4:1530137-1530156 Msa1134860:intron 30.0%
! ATAGTTTTTGCTTCAACGAA+AGG - chr7_4:1530186-1530205 Msa1134860:intron 30.0%
! TAGTTTTTGCTTCAACGAAA+GGG - chr7_4:1530187-1530206 Msa1134860:intron 30.0%
!! GAAAAATTTGGTTTGGTTCA+AGG - chr7_4:1530248-1530267 Msa1134860:intron 30.0%
CGTTATTGCAGAATTTCATC+TGG - chr7_4:1527875-1527894 Msa1134860:CDS 35.0%
TATTGCAGAATTTCATCTGG+TGG - chr7_4:1527878-1527897 Msa1134860:CDS 35.0%
ATTGCAGAATTTCATCTGGT+GGG - chr7_4:1527879-1527898 Msa1134860:CDS 35.0%
!! TTGTTTTTCTTTGCATGCAC+AGG - chr7_4:1528000-1528019 Msa1134860:CDS 35.0%
! TGTTTTTCTTTGCATGCACA+GGG - chr7_4:1528001-1528020 Msa1134860:CDS 35.0%
TGCAAACATGCTTAAGGATT+TGG - chr7_4:1528056-1528075 Msa1134860:CDS 35.0%
GCAAACATGCTTAAGGATTT+GGG - chr7_4:1528057-1528076 Msa1134860:CDS 35.0%
ATTTGGGCTCCTAAATTGAT+AGG - chr7_4:1528073-1528092 Msa1134860:CDS 35.0%
AGTCAAACTCAAAATCACTG+AGG + chr7_4:1528186-1528205 None:intergenic 35.0%
TTGAAGTCTTCAGCACAAAA+AGG + chr7_4:1528842-1528861 None:intergenic 35.0%
AGAAAGAGTAAAGAATGCCA+AGG - chr7_4:1528983-1529002 Msa1134860:intron 35.0%
!! CTGCTTGCTATTAACCAAAT+TGG - chr7_4:1529073-1529092 Msa1134860:CDS 35.0%
AAATGTAGCAAGTCACTTAC+AGG - chr7_4:1529290-1529309 Msa1134860:CDS 35.0%
AGATGTTGAAGAGAAAGGAA+TGG - chr7_4:1529503-1529522 Msa1134860:CDS 35.0%
ATTTCTCTGATCACAGAACT+TGG + chr7_4:1529579-1529598 None:intergenic 35.0%
! CCAACCCTTTTTGTATGTAA+GGG + chr7_4:1529734-1529753 None:intergenic 35.0%
TTCAAGATTGGGAACAAGTT+AGG - chr7_4:1529757-1529776 Msa1134860:intron 35.0%
TAGGCTTGGAAAATCAAAGT+TGG - chr7_4:1529776-1529795 Msa1134860:intron 35.0%
GCAAAAAACTCATTCCATGA+TGG - chr7_4:1529879-1529898 Msa1134860:intron 35.0%
TCATCATATAGAGGAGAACA+AGG - chr7_4:1529918-1529937 Msa1134860:intron 35.0%
ACATCAGAAGTAAACTTGTG+AGG + chr7_4:1530065-1530084 None:intergenic 35.0%
! AATAATGGAGCAGAAATGGT+TGG - chr7_4:1530116-1530135 Msa1134860:intron 35.0%
! AGTTTTTGCTTCAACGAAAG+GGG - chr7_4:1530188-1530207 Msa1134860:intron 35.0%
!! AAATTTGGTTTGGTTCAAGG+AGG - chr7_4:1530251-1530270 Msa1134860:intron 35.0%
!! AATTTGGTTTGGTTCAAGGA+GGG - chr7_4:1530252-1530271 Msa1134860:intron 35.0%
!! TCTATTTCTGATATTAGGGG+AGG - chr7_4:1530287-1530306 Msa1134860:intron 35.0%
!! CTATTTCTGATATTAGGGGA+GGG - chr7_4:1530288-1530307 Msa1134860:intron 35.0%
GCAGGATCAGTTAATAATGA+AGG - chr7_4:1530329-1530348 Msa1134860:intron 35.0%
TTTACTCAACGTGACTTAGA+TGG - chr7_4:1530374-1530393 Msa1134860:CDS 35.0%
TGACTTAGATGGAAATGTTG+TGG - chr7_4:1530385-1530404 Msa1134860:CDS 35.0%
GACTTAGATGGAAATGTTGT+GGG - chr7_4:1530386-1530405 Msa1134860:CDS 35.0%
!! TAGTGCTACTTTCACTAATG+AGG - chr7_4:1530427-1530446 Msa1134860:CDS 35.0%
CTACTTTCACTAATGAGGTT+GGG - chr7_4:1530432-1530451 Msa1134860:CDS 35.0%
TTTCATCTGGTGGGAATCAA+TGG - chr7_4:1527888-1527907 Msa1134860:CDS 40.0%
TTCATCTGGTGGGAATCAAT+GGG - chr7_4:1527889-1527908 Msa1134860:CDS 40.0%
CAGTGATGTCTGAAGACAAT+AGG - chr7_4:1528762-1528781 Msa1134860:CDS 40.0%
CTTGAATATCTCTCTCTCCT+TGG + chr7_4:1529003-1529022 None:intergenic 40.0%
TTGGAACAGCCTCTGAATTA+GGG + chr7_4:1529227-1529246 None:intergenic 40.0%
! TTTGGAACAGCCTCTGAATT+AGG + chr7_4:1529228-1529247 None:intergenic 40.0%
GGCTGTTCCAAAGAAAATTC+TGG - chr7_4:1529236-1529255 Msa1134860:CDS 40.0%
! ACATTTTCTCTGGTCAGGTT+TGG + chr7_4:1529276-1529295 None:intergenic 40.0%
! TTGCTACATTTTCTCTGGTC+AGG + chr7_4:1529281-1529300 None:intergenic 40.0%
!!! GTGACTTGCTACATTTTCTC+TGG + chr7_4:1529286-1529305 None:intergenic 40.0%
GTTGAAGAGAAAGGAATGGT+TGG - chr7_4:1529507-1529526 Msa1134860:CDS 40.0%
ACACTGGCATATCAAACAAG+AGG - chr7_4:1529651-1529670 Msa1134860:intron 40.0%
GCGTTGGAAATTGGTTGAAA+TGG + chr7_4:1529695-1529714 None:intergenic 40.0%
CAACATGATGCGTTGGAAAT+TGG + chr7_4:1529704-1529723 None:intergenic 40.0%
CAATTTCCAACGCATCATGT+TGG - chr7_4:1529702-1529721 Msa1134860:intron 40.0%
CCCTTACATACAAAAAGGGT+TGG - chr7_4:1529731-1529750 Msa1134860:intron 40.0%
! GCCAACCCTTTTTGTATGTA+AGG + chr7_4:1529735-1529754 None:intergenic 40.0%
GATGTTGTTGCGGAGAATAA+TGG - chr7_4:1529804-1529823 Msa1134860:intron 40.0%
ATAATGGCCATGGTCAAAAC+AGG - chr7_4:1529820-1529839 Msa1134860:intron 40.0%
!!! TTCCAAACCTGTTTTGACCA+TGG + chr7_4:1529830-1529849 None:intergenic 40.0%
TAGAGGAGAACAAGGATTGA+TGG - chr7_4:1529926-1529945 Msa1134860:intron 40.0%
GACATTAGAAACCAGACTCA+TGG - chr7_4:1529993-1530012 Msa1134860:intron 40.0%
! GCTGAATAATGGAGCAGAAA+TGG - chr7_4:1530112-1530131 Msa1134860:intron 40.0%
!! AGTGGAAGAAAGTTTCTAGC+AGG - chr7_4:1530311-1530330 Msa1134860:intron 40.0%
! GCTACTTTCACTAATGAGGT+TGG - chr7_4:1530431-1530450 Msa1134860:CDS 40.0%
CAAAGCATGACGAGCATCTT+TGG + chr7_4:1527820-1527839 None:intergenic 45.0%
CTGCGAGATGTTGAAGAGAA+AGG - chr7_4:1529498-1529517 Msa1134860:CDS 45.0%
GAAGAGAAAGGAATGGTTGG+AGG - chr7_4:1529510-1529529 Msa1134860:CDS 45.0%
AATTGGCCAACATGATGCGT+TGG + chr7_4:1529711-1529730 None:intergenic 45.0%
!! AAGGGTTGGCTCTTCAAGAT+TGG - chr7_4:1529745-1529764 Msa1134860:intron 45.0%
!! AGGGTTGGCTCTTCAAGATT+GGG - chr7_4:1529746-1529765 Msa1134860:intron 45.0%
GATTGGGAACAAGTTAGGCT+TGG - chr7_4:1529762-1529781 Msa1134860:intron 45.0%
GTTGGAAGCTGATGTTGTTG+CGG - chr7_4:1529794-1529813 Msa1134860:intron 45.0%
GGAGCAGAAATGGTTGGAAT+TGG - chr7_4:1530122-1530141 Msa1134860:intron 45.0%
TGACAAGAATCTCCGCAACA+AGG - chr7_4:1530499-1530518 Msa1134860:CDS 45.0%
!!! TATTTTGATAAATAATTTAT+AGG - chr7_4:1528425-1528444 Msa1134860:CDS 5.0%
!!! ATTTTGATAAATAATTTATA+GGG - chr7_4:1528426-1528445 Msa1134860:CDS 5.0%
GTTGCGGAGAATAATGGCCA+TGG - chr7_4:1529810-1529829 Msa1134860:intron 50.0%
GGCCATGGTCAAAACAGGTT+TGG - chr7_4:1529825-1529844 Msa1134860:intron 50.0%
!! AGCTAGTGGAAGCACCATCA+TGG + chr7_4:1529896-1529915 None:intergenic 50.0%
TCTGATATTAGGGGAGGGAG+TGG - chr7_4:1530293-1530312 Msa1134860:intron 50.0%
! GGTTCAAGGAGGGTTTGCTC+TGG - chr7_4:1530262-1530281 Msa1134860:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 1527810 1530523 1527810 ID=Msa1134860;Name=Msa1134860
chr7_4 mRNA 1527810 1530523 1527810 ID=Msa1134860-mRNA-1;Parent=Msa1134860;Name=Msa1134860-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|0.75|0.2|5|0|529
chr7_4 exon 1530373 1530523 1530373 ID=Msa1134860-mRNA-1:exon:577;Parent=Msa1134860-mRNA-1
chr7_4 exon 1529419 1529568 1529419 ID=Msa1134860-mRNA-1:exon:576;Parent=Msa1134860-mRNA-1
chr7_4 exon 1529230 1529397 1529230 ID=Msa1134860-mRNA-1:exon:575;Parent=Msa1134860-mRNA-1
chr7_4 exon 1529022 1529098 1529022 ID=Msa1134860-mRNA-1:exon:574;Parent=Msa1134860-mRNA-1
chr7_4 exon 1527810 1528850 1527810 ID=Msa1134860-mRNA-1:exon:573;Parent=Msa1134860-mRNA-1
chr7_4 CDS 1530373 1530523 1530373 ID=Msa1134860-mRNA-1:cds;Parent=Msa1134860-mRNA-1
chr7_4 CDS 1529419 1529568 1529419 ID=Msa1134860-mRNA-1:cds;Parent=Msa1134860-mRNA-1
chr7_4 CDS 1529230 1529397 1529230 ID=Msa1134860-mRNA-1:cds;Parent=Msa1134860-mRNA-1
chr7_4 CDS 1529022 1529098 1529022 ID=Msa1134860-mRNA-1:cds;Parent=Msa1134860-mRNA-1
chr7_4 CDS 1527810 1528850 1527810 ID=Msa1134860-mRNA-1:cds;Parent=Msa1134860-mRNA-1
Gene Sequence

>Msa1134860

GTTACTGCCAAAGATGCTCGTCATGCTTTGATCACTCTTCAAGAAAATGAAGGCTTGTTTGATCTCGTTATTGCAGAATTTCATCTGGTGGGAATCAATGGGTTAGAATTTCAAAAGCATATTAAAGATCAATTCCAGATACCTATAATAATGATGTCTGAAGACAATAGGCCAAGTTTAATCTCAAAGACACTAGAAAATGGAGCTGCACAATATATTGTGAAACCTTTTTGTGCTGAAGACTTCAAAGATATTTGGAAATATGTTATGGAAGCAAAGAAAGAGAAACTTTTCATTGAAAAAGAAGAGATATCAAGTGAACCTAAGAACAAAAAGAAGCATTGCAAGAGAAAGAGTAAAGAATGCCAAGGAGAGAGAGATATTCAAGTTGTTAAGAAACAAAAGCTTGTTTGGACACCTTATCTGCACAAAATGTTTCTGCTTGCTATTAACCAAATTGGATTGGAAAAGGCTGTTCCAAAGAAAATTCTGGAGATCATGAATATACCAAACCTGACCAGAGAAAATGTAGCAAGTCACTTACAGAAGTATCGCATATTTCTGCGAGATGTTGAAGAGAAAGGAATGGTTGGAGGCATATCTCACAGAGCTATAAGATCAAGTTTTGCATCAGGTCTACCAAGTTCTGTGATCAGAGAAATCGAAGAAAAAAGGACAAACAAACTTCATGCGCCAACACTTCAATATTTGCAAACACTGGCATATCAAACAAGAGGTGCAAACAATGTTTTTAACCATTTCAACCAATTTCCAACGCATCATGTTGGCCAATTCCCTTACATACAAAAAGGGTTGGCTCTTCAAGATTGGGAACAAGTTAGGCTTGGAAAATCAAAGTTGGAAGCTGATGTTGTTGCGGAGAATAATGGCCATGGTCAAAACAGGTTTGGAATAAGCTCTTCAAACCTTCCATTTTTTCAAGCAAAAAACTCATTCCATGATGGTGCTTCCACTAGCTTTTCATCATATAGAGGAGAACAAGGATTGATGGTTTCTTCTTCTTCAAGTTTGTTAACAAGGGATTTTAAATTTGGTGACATTAGAAACCAGACTCATGGTGTTAAAAATTCTAACTTTGGATCTTTGGCAAGCCCTAATATTATGCCTCACAAGTTTACTTCTGATGTAAGAAACAATAACCATTTTGGAATTCAGCTGAATAATGGAGCAGAAATGGTTGGAATTGGAACTATGAATAATGGATTAAGGGATTCTAGTGCAAATAACAATAGTTTTTGCTTCAACGAAAGGGGTCAAAATGAAAATATAAATTTTAGATCTTTTGTGAATGAAAAATTTGGTTTGGTTCAAGGAGGGTTTGCTCTGGATTCTATTTCTGATATTAGGGGAGGGAGTGGAAGAAAGTTTCTAGCAGGATCAGTTAATAATGAAGGAAATGTTTCAAAGAATAGACAATTTACTCAACGTGACTTAGATGGAAATGTTGTGGGAAATGAGCAAAAGTATAATAGTGCTACTTTCACTAATGAGGTTGGGTTCAACAAAATTGAATTCAACAATTTTGATTACTTAATGGATGATGACAAGAATCTCCGCAACAAGGTA

Protein sequence

>Msa1134860

VTAKDARHALITLQENEGLFDLVIAEFHLVGINGLEFQKHIKDQFQIPIIMMSEDNRPSLISKTLENGAAQYIVKPFCAEDFKDIWKYVMEAKKEKLFIEKEEISSEPKNKKKHCKRKSKECQGERDIQVVKKQKLVWTPYLHKMFLLAINQIGLEKAVPKKILEIMNIPNLTRENVASHLQKYRIFLRDVEEKGMVGGISHRAIRSSFASGLPSSVIREIEEKRTNKLHAPTLQYLQTLAYQTRGANNVFNHFNQFPTHHVGQFPYIQKGLALQDWEQVRLGKSKLEADVVAENNGHGQNRFGISSSNLPFFQAKNSFHDGASTSFSSYRGEQGLMVSSSSSLLTRDFKFGDIRNQTHGVKNSNFGSLASPNIMPHKFTSDVRNNNHFGIQLNNGAEMVGIGTMNNGLRDSSANNNSFCFNERGQNENINFRSFVNEKFGLVQGGFALDSISDIRGGSGRKFLAGSVNNEGNVSKNRQFTQRDLDGNVVGNEQKYNSATFTNEVGFNKIEFNNFDYLMDDDKNLRNKV