AlfalfaGEDB | Msa1135500

M. sativa cultivar zhongmu-4 / Msa1135500

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135500	XP_024626315.1	98.542	480	5	1	19	498	1	478	0.0	984

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135500	sp\|Q9LFP7\|PBL34_ARATH	71.018	452	116	6	51	496	47	489	0.0	645

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135500	A0A396GSR7	98.542	480	5	1	19	498	1	478	0.0	984

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135500	MtrunA17_Chr7g0216551	98.542	480	5	1	19	498	1	478	0.0	984
Msa1135500	MtrunA17_Chr6g0452761	75.714	490	99	6	19	495	1	483	0.0	711
Msa1135500	MtrunA17_Chr5g0416011	73.846	455	113	5	44	495	37	488	0.0	676
Msa1135500	MtrunA17_Chr8g0362661	72.788	452	118	4	46	495	37	485	0.0	671
Msa1135500	MtrunA17_Chr4g0064201	61.220	410	151	5	44	453	18	419	6.44e-177	504
Msa1135500	MtrunA17_Chr5g0435211	58.445	373	142	4	59	429	1	362	2.27e-162	466
Msa1135500	MtrunA17_Chr2g0328171	63.939	330	114	3	103	428	32	360	7.76e-158	454
Msa1135500	MtrunA17_Chr7g0238671	66.561	314	102	2	121	432	51	363	5.11e-154	444
Msa1135500	MtrunA17_Chr5g0416311	58.919	370	142	2	59	428	1	360	9.56e-152	439
Msa1135500	MtrunA17_Chr7g0245571	68.896	299	89	2	131	429	79	373	2.65e-151	439

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135500	AT5G15080.1	71.018	452	116	6	51	496	47	489	0.0	645
Msa1135500	AT3G01300.1	70.485	454	122	6	46	496	42	486	0.0	633
Msa1135500	AT3G28690.2	66.456	474	136	5	31	496	14	472	0.0	622
Msa1135500	AT3G28690.3	71.014	414	111	3	84	496	16	421	0.0	602
Msa1135500	AT3G28690.1	74.211	380	89	3	118	496	1	372	0.0	587
Msa1135500	AT2G28930.2	65.944	323	107	2	112	432	38	359	4.03e-156	450
Msa1135500	AT2G28930.3	65.944	323	107	2	112	432	41	362	6.54e-156	450
Msa1135500	AT2G28930.1	65.944	323	107	2	112	432	49	370	8.80e-156	450
Msa1135500	AT1G07570.1	61.648	352	120	3	93	430	6	356	9.24e-155	447
Msa1135500	AT1G07570.5	61.648	352	120	3	93	430	6	356	9.24e-155	447

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Find 140 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAGACAACCCAGTTG+AGG	0.614791	7_4:-3155185	None:intergenic
AAACGGTGAACACAATCTTG+TGG	0.653909	7_4:+3159275	Msa1135500:CDS
AAAGAAGCTCTATGAAATGG+TGG	0.612864	7_4:-3159837	None:intergenic
AAAGGTTGGATTGAGGAGAA+TGG	0.473167	7_4:+3156798	Msa1135500:CDS
AAATGTGGAAGGAAGAAACC+GGG	0.665238	7_4:-3155058	None:intergenic
AACTTCACTCATCATAGGTC+TGG	0.489893	7_4:-3159436	None:intergenic
AAGAGCGACGTCTATAGTTT+TGG	0.320260	7_4:+3159198	Msa1135500:CDS
AAGGCATTGGGCGGCTAGTT+GGG	0.312315	7_4:-3159397	None:intergenic
AAGGGTCGTTGCCTCTTCCT+TGG	0.409974	7_4:+3157841	Msa1135500:CDS
AAGGTCACTTCTCTGTCAAA+GGG	0.473319	7_4:+3159361	Msa1135500:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATTGAGATTTCTTGAAGT+GGG	+	chr7_4:3155436-3155455	Msa1135500:intron	30.0%
GATTGTGATGAGAAAGAAAT+TGG	+	chr7_4:3155640-3155659	Msa1135500:CDS	30.0%
GTGTATACCTTCAAGATTAA+AGG	+	chr7_4:3155693-3155712	Msa1135500:CDS	30.0%
CTATCAACCTTTAATCTTGA+AGG	-	chr7_4:3155703-3155722	None:intergenic	30.0%
AAAATACTATAGGCTCTGTT+TGG	-	chr7_4:3156112-3156131	None:intergenic	30.0%
CAATCAATTTGACCAAATTC+GGG	-	chr7_4:3157046-3157065	None:intergenic	30.0%
CCAATCAATTTGACCAAATT+CGG	-	chr7_4:3157047-3157066	None:intergenic	30.0%
TTTCATTGCAGCAAATTTGA+AGG	+	chr7_4:3157217-3157236	Msa1135500:intron	30.0%
CATCATTAATGTTTGTATCG+AGG	-	chr7_4:3157344-3157363	None:intergenic	30.0%
TCTAAATCTGATAACAACCT+AGG	-	chr7_4:3157433-3157452	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	3155059	3160041	3155059	ID=Msa1135500;Name=Msa1135500
chr7_4	mRNA	3155059	3160041	3155059	ID=Msa1135500-mRNA-1;Parent=Msa1135500;Name=Msa1135500-mRNA-1;_AED=0.11;_eAED=0.11;_QI=338\|1\|1\|1\|0.83\|0.71\|7\|346\|498
chr7_4	exon	3155059	3155340	3155059	ID=Msa1135500-mRNA-1:exon:863;Parent=Msa1135500-mRNA-1
chr7_4	exon	3155455	3155760	3155455	ID=Msa1135500-mRNA-1:exon:864;Parent=Msa1135500-mRNA-1
chr7_4	exon	3156574	3156908	3156574	ID=Msa1135500-mRNA-1:exon:865;Parent=Msa1135500-mRNA-1
chr7_4	exon	3157011	3157146	3157011	ID=Msa1135500-mRNA-1:exon:866;Parent=Msa1135500-mRNA-1
chr7_4	exon	3157841	3157980	3157841	ID=Msa1135500-mRNA-1:exon:867;Parent=Msa1135500-mRNA-1
chr7_4	exon	3158071	3158194	3158071	ID=Msa1135500-mRNA-1:exon:868;Parent=Msa1135500-mRNA-1
chr7_4	exon	3159184	3160041	3159184	ID=Msa1135500-mRNA-1:exon:869;Parent=Msa1135500-mRNA-1
chr7_4	five_prime_UTR	3155059	3155340	3155059	ID=Msa1135500-mRNA-1:five_prime_utr;Parent=Msa1135500-mRNA-1
chr7_4	five_prime_UTR	3155455	3155510	3155455	ID=Msa1135500-mRNA-1:five_prime_utr;Parent=Msa1135500-mRNA-1
chr7_4	CDS	3155511	3155760	3155511	ID=Msa1135500-mRNA-1:cds;Parent=Msa1135500-mRNA-1
chr7_4	CDS	3156574	3156908	3156574	ID=Msa1135500-mRNA-1:cds;Parent=Msa1135500-mRNA-1
chr7_4	CDS	3157011	3157146	3157011	ID=Msa1135500-mRNA-1:cds;Parent=Msa1135500-mRNA-1
chr7_4	CDS	3157841	3157980	3157841	ID=Msa1135500-mRNA-1:cds;Parent=Msa1135500-mRNA-1
chr7_4	CDS	3158071	3158194	3158071	ID=Msa1135500-mRNA-1:cds;Parent=Msa1135500-mRNA-1
chr7_4	CDS	3159184	3159695	3159184	ID=Msa1135500-mRNA-1:cds;Parent=Msa1135500-mRNA-1
chr7_4	three_prime_UTR	3159696	3160041	3159696	ID=Msa1135500-mRNA-1:three_prime_utr;Parent=Msa1135500-mRNA-1

Gene Sequence

>Msa1135500

ATGGTGAATTTTTTAATATGTAAAAAAAATAAAAAATTTAAGAGTTTTTGGAAGATGGGGTTTAGGAATAATGCAATTCAAGCAGGGAGTTTGGATGTGGGAGGGAAGTCAAAGGGAAAGATGAAGAAAGATTGTGATGAGAAAGAAATTGGTTGTTGTGTTAAATTTAGTTGCTTTGGAAAGTGTATACCTTCAAGATTAAAGGTTGATAGTTCCAATTCCAAAAGTGGTACCACAAGTGCTCATAATGTGGAAAATGCATCTGCGTATGAGAGAAGCAAAAAGGAAAAAAGTGCTCCTCCAGGATCCTCTACAACTAGTAATGCAGAAAGTATCCCTTCCACTCCAATGTTCAGCGAAGAGTTGAAGGTTTCTTCTGATTTGAGAAAGTTCACATTCAATGAGCTAAAGATGGCAACTAGGAATTTCCGACCCGAGAGTCTTCTTGGTGAGGGAGGATTCGGTTGTGTATTCAAAGGTTGGATTGAGGAGAATGGAACTGCACCGGTGAAACCAGGTACTGGACTTACCGTCGCGGTCAAGACCCTCAACCATGATGGACTTCAAGGTCACAAAGAGTGGCTTGCTGAGTTAAACATTCTCGGTGATATCGTCCACCCGAATTTGGTCAAATTGATTGGCTTCTGTATTGAAGATGATCAAAGATTATTGGTTTATCAGTTTATGCCGCGTGGAAGTTTGGAAAACCATCTTTTCAGAAAAGGGTCGTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCAGCAAAAGGTCTTAATTTTCTCCATGAAGAAGCTCAGAGACCTATAATCTATCGTGATTTCAAGACTTCTAATATTCTATTAGATGCGGAATACAATGCAAAGCTCTCGGATTTTGGACTTGCCAAAGATGGTCCTCAAGGGGAAAATACACACATATCAACAAGAGTTATGGGAACATATGGTTATGCAGCTCCTGAATATGTAATGACTGGTCATTTGACATCAAAGAGCGACGTCTATAGTTTTGGAGTAGTACTACTTGAAATGCTCACTGGACGGCGAGCTGTTGATAAAAATAGACCAAACGGTGAACACAATCTTGTGGAGTGGGCGAGACCTGTACTTGGAGAAAGAAGATTGTTGTTCCAGATAATTGATCCTCGTCTCGAAGGTCACTTCTCTGTCAAAGGGGCACAGAAAGCCGCCCAACTAGCCGCCCAATGCCTTAACCGTGATCCGAAAGCCAGACCTATGATGAGTGAAGTTGTTCACACTCTAAAGCCTTTGCAAAACCTCAAAGATATGGCTATCGCGTCATATCACTTTCAAGTGGTGCGAGTAGATCGTACAATGTCGATGCCGAATTCTAAAAATGGCACACAAACACAGGTAGCATCTTTATCAAAGAAGGGTCAACCTATGAGGATCTTGTCAAGTCCAAATGGTCAACATGGTTCTCCGTACCGTCATTATATCAAGTCACCAAAACCTAAAAATGGATAA

Protein sequence

>Msa1135500

MVNFLICKKNKKFKSFWKMGFRNNAIQAGSLDVGGKSKGKMKKDCDEKEIGCCVKFSCFGKCIPSRLKVDSSNSKSGTTSAHNVENASAYERSKKEKSAPPGSSTTSNAESIPSTPMFSEELKVSSDLRKFTFNELKMATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELNILGDIVHPNLVKLIGFCIEDDQRLLVYQFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLNFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPQGENTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRAVDKNRPNGEHNLVEWARPVLGERRLLFQIIDPRLEGHFSVKGAQKAAQLAAQCLNRDPKARPMMSEVVHTLKPLQNLKDMAIASYHFQVVRVDRTMSMPNSKNGTQTQVASLSKKGQPMRILSSPNGQHGSPYRHYIKSPKPKNG*