Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135930 | XP_003621170.1 | 94.485 | 272 | 15 | 0 | 1 | 272 | 1 | 272 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135930 | sp|Q8LAT0|ATB20_ARATH | 44.444 | 279 | 128 | 12 | 1 | 272 | 16 | 274 | 9.85e-63 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135930 | G7KZX6 | 94.485 | 272 | 15 | 0 | 1 | 272 | 1 | 272 | 0.0 | 535 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1135930 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135930 | MtrunA17_Chr7g0217111 | 94.485 | 272 | 15 | 0 | 1 | 272 | 1 | 272 | 0.0 | 535 |
| Msa1135930 | MtrunA17_Chr6g0453021 | 60.825 | 291 | 73 | 10 | 1 | 272 | 1 | 269 | 7.79e-109 | 316 |
| Msa1135930 | MtrunA17_Chr8g0362151 | 50.704 | 284 | 118 | 9 | 1 | 271 | 1 | 275 | 1.23e-75 | 231 |
| Msa1135930 | MtrunA17_Chr5g0416391 | 48.582 | 282 | 125 | 8 | 1 | 271 | 4 | 276 | 1.41e-68 | 213 |
| Msa1135930 | MtrunA17_Chr5g0415941 | 59.459 | 111 | 43 | 1 | 65 | 175 | 74 | 182 | 3.77e-33 | 123 |
| Msa1135930 | MtrunA17_Chr3g0119291 | 48.921 | 139 | 59 | 3 | 71 | 197 | 47 | 185 | 2.11e-32 | 119 |
| Msa1135930 | MtrunA17_Chr4g0060031 | 40.187 | 214 | 109 | 6 | 48 | 252 | 57 | 260 | 1.53e-31 | 119 |
| Msa1135930 | MtrunA17_Chr6g0450991 | 56.436 | 101 | 43 | 1 | 75 | 175 | 63 | 162 | 1.06e-29 | 113 |
| Msa1135930 | MtrunA17_Chr3g0123691 | 57.732 | 97 | 41 | 0 | 79 | 175 | 59 | 155 | 1.55e-29 | 113 |
| Msa1135930 | MtrunA17_Chr8g0381741 | 56.701 | 97 | 42 | 0 | 79 | 175 | 53 | 149 | 1.34e-28 | 110 |
| Msa1135930 | MtrunA17_Chr7g0265521 | 47.015 | 134 | 59 | 3 | 67 | 196 | 51 | 176 | 1.24e-26 | 103 |
| Msa1135930 | MtrunA17_Chr8g0362751 | 57.292 | 96 | 41 | 0 | 80 | 175 | 89 | 184 | 1.48e-26 | 105 |
| Msa1135930 | MtrunA17_Chr1g0179581 | 58.537 | 82 | 34 | 0 | 78 | 159 | 26 | 107 | 2.20e-24 | 94.4 |
| Msa1135930 | MtrunA17_Chr4g0055851 | 38.608 | 158 | 88 | 2 | 16 | 173 | 61 | 209 | 8.40e-24 | 97.4 |
| Msa1135930 | MtrunA17_Chr3g0127511 | 48.889 | 90 | 46 | 0 | 83 | 172 | 41 | 130 | 5.86e-22 | 91.7 |
| Msa1135930 | MtrunA17_Chr8g0346251 | 50.000 | 86 | 36 | 1 | 87 | 165 | 48 | 133 | 8.48e-21 | 88.6 |
| Msa1135930 | MtrunA17_Chr5g0399491 | 40.625 | 128 | 66 | 2 | 49 | 167 | 97 | 223 | 4.40e-20 | 87.8 |
| Msa1135930 | MtrunA17_Chr7g0258831 | 39.370 | 127 | 70 | 1 | 48 | 174 | 128 | 247 | 1.09e-19 | 86.7 |
| Msa1135930 | MtrunA17_Chr1g0175651 | 44.762 | 105 | 51 | 1 | 70 | 174 | 144 | 241 | 2.38e-19 | 85.5 |
| Msa1135930 | MtrunA17_Chr1g0151971 | 47.917 | 96 | 43 | 1 | 79 | 174 | 129 | 217 | 1.22e-18 | 83.6 |
| Msa1135930 | MtrunA17_Chr4g0054421 | 43.925 | 107 | 52 | 2 | 68 | 174 | 116 | 214 | 1.32e-18 | 83.2 |
| Msa1135930 | MtrunA17_Chr5g0400781 | 44.231 | 104 | 51 | 1 | 71 | 174 | 114 | 210 | 1.42e-18 | 83.2 |
| Msa1135930 | MtrunA17_Chr8g0335131 | 48.421 | 95 | 45 | 1 | 79 | 173 | 145 | 235 | 2.30e-18 | 83.2 |
| Msa1135930 | MtrunA17_Chr2g0308611 | 44.037 | 109 | 57 | 2 | 68 | 176 | 188 | 292 | 5.65e-18 | 82.4 |
| Msa1135930 | MtrunA17_Chr4g0071411 | 46.512 | 86 | 46 | 0 | 82 | 167 | 90 | 175 | 1.20e-17 | 79.3 |
| Msa1135930 | MtrunA17_Chr4g0044091 | 43.820 | 89 | 50 | 0 | 79 | 167 | 64 | 152 | 3.62e-16 | 75.1 |
| Msa1135930 | MtrunA17_Chr5g0403701 | 47.778 | 90 | 47 | 0 | 80 | 169 | 53 | 142 | 1.92e-15 | 73.2 |
| Msa1135930 | MtrunA17_Chr5g0403691 | 52.778 | 72 | 34 | 0 | 80 | 151 | 53 | 124 | 2.45e-14 | 70.5 |
| Msa1135930 | MtrunA17_Chr3g0135331 | 31.410 | 156 | 89 | 3 | 59 | 196 | 120 | 275 | 1.63e-13 | 69.3 |
| Msa1135930 | MtrunA17_Chr2g0299031 | 42.268 | 97 | 52 | 1 | 77 | 173 | 79 | 171 | 2.98e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135930 | AT3G01220.1 | 44.444 | 279 | 128 | 12 | 1 | 272 | 16 | 274 | 1.00e-63 | 201 |
| Msa1135930 | AT5G15150.1 | 45.051 | 293 | 125 | 12 | 1 | 271 | 22 | 300 | 1.75e-61 | 197 |
| Msa1135930 | AT1G69780.1 | 43.206 | 287 | 132 | 11 | 6 | 271 | 11 | 287 | 1.72e-58 | 188 |
| Msa1135930 | AT1G26960.1 | 44.628 | 242 | 110 | 9 | 33 | 271 | 28 | 248 | 3.63e-52 | 171 |
| Msa1135930 | AT5G65310.2 | 47.552 | 143 | 70 | 2 | 40 | 180 | 15 | 154 | 2.11e-32 | 120 |
| Msa1135930 | AT5G65310.1 | 47.552 | 143 | 70 | 2 | 40 | 180 | 33 | 172 | 2.45e-32 | 121 |
| Msa1135930 | AT2G22430.1 | 56.701 | 97 | 42 | 0 | 79 | 175 | 61 | 157 | 2.56e-30 | 115 |
| Msa1135930 | AT4G40060.1 | 55.670 | 97 | 43 | 0 | 79 | 175 | 58 | 154 | 3.11e-30 | 115 |
| Msa1135930 | AT3G01470.1 | 54.639 | 97 | 44 | 0 | 79 | 175 | 67 | 163 | 3.51e-29 | 112 |
| Msa1135930 | AT2G46680.1 | 49.451 | 91 | 46 | 0 | 83 | 173 | 35 | 125 | 1.77e-23 | 96.7 |
| Msa1135930 | AT3G61890.1 | 48.889 | 90 | 46 | 0 | 83 | 172 | 33 | 122 | 2.69e-22 | 92.8 |
| Msa1135930 | AT5G03790.1 | 46.429 | 112 | 58 | 1 | 80 | 189 | 77 | 188 | 4.50e-22 | 92.0 |
| Msa1135930 | AT1G27045.1 | 39.370 | 127 | 77 | 0 | 49 | 175 | 37 | 163 | 6.90e-22 | 91.7 |
| Msa1135930 | AT1G27045.4 | 39.516 | 124 | 75 | 0 | 49 | 172 | 37 | 160 | 3.36e-21 | 90.1 |
| Msa1135930 | AT2G46680.2 | 47.674 | 86 | 45 | 0 | 83 | 168 | 35 | 120 | 4.52e-21 | 90.1 |
| Msa1135930 | AT1G27045.5 | 43.636 | 110 | 62 | 0 | 66 | 175 | 11 | 120 | 7.19e-21 | 87.8 |
| Msa1135930 | AT1G27045.3 | 43.636 | 110 | 62 | 0 | 66 | 175 | 11 | 120 | 7.19e-21 | 87.8 |
| Msa1135930 | AT1G27045.2 | 43.636 | 110 | 62 | 0 | 66 | 175 | 3 | 112 | 9.24e-21 | 87.0 |
| Msa1135930 | AT5G03790.2 | 48.454 | 97 | 48 | 1 | 80 | 176 | 77 | 171 | 1.49e-20 | 87.0 |
| Msa1135930 | AT4G17460.1 | 43.478 | 115 | 61 | 1 | 59 | 173 | 114 | 224 | 4.92e-20 | 87.8 |
| Msa1135930 | AT2G36610.1 | 45.045 | 111 | 46 | 2 | 72 | 174 | 63 | 166 | 4.52e-19 | 82.8 |
| Msa1135930 | AT5G47370.1 | 38.971 | 136 | 70 | 4 | 45 | 173 | 90 | 219 | 4.68e-19 | 85.1 |
| Msa1135930 | AT3G60390.1 | 44.643 | 112 | 53 | 3 | 65 | 173 | 146 | 251 | 1.60e-18 | 84.0 |
| Msa1135930 | AT5G53980.1 | 47.872 | 94 | 49 | 0 | 77 | 170 | 8 | 101 | 2.17e-18 | 80.5 |
| Msa1135930 | AT4G16780.1 | 43.636 | 110 | 58 | 1 | 64 | 173 | 113 | 218 | 2.44e-18 | 83.2 |
| Msa1135930 | AT2G01430.1 | 44.118 | 102 | 57 | 0 | 66 | 167 | 125 | 226 | 3.74e-18 | 82.4 |
| Msa1135930 | AT2G18550.1 | 33.333 | 186 | 97 | 5 | 15 | 195 | 7 | 170 | 4.93e-18 | 80.9 |
| Msa1135930 | AT5G06710.1 | 46.875 | 96 | 47 | 1 | 79 | 174 | 189 | 280 | 1.06e-17 | 82.0 |
| Msa1135930 | AT4G37790.1 | 44.231 | 104 | 51 | 1 | 71 | 174 | 117 | 213 | 1.75e-17 | 80.5 |
| Msa1135930 | AT2G22800.1 | 41.379 | 116 | 52 | 3 | 59 | 174 | 101 | 200 | 7.25e-17 | 78.6 |
| Msa1135930 | AT2G44910.1 | 45.263 | 95 | 48 | 1 | 79 | 173 | 162 | 252 | 1.97e-16 | 78.2 |
| Msa1135930 | AT4G36740.1 | 42.056 | 107 | 57 | 1 | 80 | 181 | 55 | 161 | 3.15e-16 | 75.9 |
| Msa1135930 | AT4G36740.2 | 42.056 | 107 | 57 | 1 | 80 | 181 | 56 | 162 | 3.44e-16 | 75.9 |
| Msa1135930 | AT1G70920.1 | 41.346 | 104 | 59 | 1 | 64 | 167 | 55 | 156 | 7.32e-16 | 74.7 |
| Msa1135930 | AT1G70920.2 | 41.346 | 104 | 59 | 1 | 64 | 167 | 25 | 126 | 9.01e-16 | 73.9 |
| Msa1135930 | AT5G66700.1 | 46.512 | 86 | 43 | 1 | 66 | 151 | 60 | 142 | 9.25e-15 | 72.0 |
| Msa1135930 | AT5G06710.4 | 54.717 | 53 | 24 | 0 | 79 | 131 | 189 | 241 | 1.42e-11 | 63.9 |
| Msa1135930 | AT2G01430.2 | 48.485 | 66 | 34 | 0 | 66 | 131 | 125 | 190 | 2.41e-11 | 62.4 |
Find 64 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAGAAGAGCTTTGAATT+TGG | 0.186029 | 7_4:+3837987 | Msa1135930:CDS |
| GTGCAACTTGCTAAGGCTTT+AGG | 0.214413 | 7_4:+3838035 | Msa1135930:CDS |
| GAAGAAGATCAGGCTGAATT+TGG | 0.249178 | 7_4:+3837950 | Msa1135930:CDS |
| TGCAACTTGCTAAGGCTTTA+GGG | 0.260540 | 7_4:+3838036 | Msa1135930:CDS |
| AAGTTGGTAGAAGGCTAATT+AGG | 0.295400 | 7_4:-3839979 | None:intergenic |
| GATATACAAAATCATTAATA+AGG | 0.296807 | 7_4:-3840145 | None:intergenic |
| AGAAGTTGGGGTATATTGTT+AGG | 0.301981 | 7_4:-3840010 | None:intergenic |
| TTGAGAAGAGCTTTGAATTT+GGG | 0.313267 | 7_4:+3837988 | Msa1135930:CDS |
| AGCCTAGACAAATTGCTATA+TGG | 0.333381 | 7_4:+3838063 | Msa1135930:CDS |
| TTTGTATATCATTGATCAAT+TGG | 0.336469 | 7_4:+3840158 | Msa1135930:three_prime_UTR |
| CACATCACTAGCATTCAATA+TGG | 0.378757 | 7_4:+3837261 | Msa1135930:exon |
| AGCATCAGAACCTCTGGCCT+TGG | 0.392592 | 7_4:+3840098 | Msa1135930:CDS |
| GGTTTAATGAAGTTGGTAGA+AGG | 0.399111 | 7_4:-3839988 | None:intergenic |
| TGAAAGAAAATGAGGGTTCA+TGG | 0.400121 | 7_4:+3839864 | Msa1135930:CDS |
| TGATGTGAATTGAAGAAGTT+GGG | 0.408685 | 7_4:-3840023 | None:intergenic |
| GGGTTAGGCACTCACTTTCA+TGG | 0.410920 | 7_4:-3837128 | None:intergenic |
| GTGGAGAGAAGAAGAAGATC+AGG | 0.413666 | 7_4:+3837940 | Msa1135930:CDS |
| TTGTTAGGGTTTAATGAAGT+TGG | 0.422091 | 7_4:-3839995 | None:intergenic |
| TCTTCTTCTTCTCTCCACTT+TGG | 0.431006 | 7_4:-3837935 | None:intergenic |
| TGTGATAAATTCATGCAAAT+TGG | 0.443285 | 7_4:-3837242 | None:intergenic |
| TTGATGTGAATTGAAGAAGT+TGG | 0.467181 | 7_4:-3840024 | None:intergenic |
| GATGATGATTTATCTGATGA+TGG | 0.471832 | 7_4:+3837909 | Msa1135930:CDS |
| AATATATATTCAGAGGGGTT+AGG | 0.479154 | 7_4:-3837143 | None:intergenic |
| ATGCATAATGAAAGAAAATG+AGG | 0.485339 | 7_4:+3839856 | Msa1135930:CDS |
| AAGTGTTGAGGTGGAAAAGA+AGG | 0.489869 | 7_4:-3837364 | None:intergenic |
| GAAGTTGGGGTATATTGTTA+GGG | 0.501507 | 7_4:-3840009 | None:intergenic |
| AACATGAAACTATGAGGTGG+TGG | 0.502381 | 7_4:-3837289 | None:intergenic |
| AAGAAAAGTGCAACTTGCTA+AGG | 0.505520 | 7_4:+3838028 | Msa1135930:CDS |
| TTGATGAGCATCAGAACCTC+TGG | 0.507447 | 7_4:+3840092 | Msa1135930:CDS |
| AGTGTTGAGGTGGAAAAGAA+GGG | 0.508674 | 7_4:-3837363 | None:intergenic |
| CAAATTCAAAGCTCTTCTCA+AGG | 0.519428 | 7_4:-3837986 | None:intergenic |
| GCTGAATTTGGATCAAGTGC+AGG | 0.523368 | 7_4:+3837962 | Msa1135930:CDS |
| AGTTCTGTTTCTTCACAGAA+TGG | 0.523751 | 7_4:+3839950 | Msa1135930:CDS |
| GAAGAAATTTGAAGCTGTCA+AGG | 0.526329 | 7_4:+3838148 | Msa1135930:CDS |
| CAGCTTCAAATTTCTTCTTG+AGG | 0.527423 | 7_4:-3838142 | None:intergenic |
| AAAAGCAAGGATTGGTGTGA+AGG | 0.539700 | 7_4:+3839824 | Msa1135930:CDS |
| CCACCTCAACACTTTCAACA+AGG | 0.552469 | 7_4:+3837373 | Msa1135930:CDS |
| CCTTGTTGAAAGTGTTGAGG+TGG | 0.554667 | 7_4:-3837373 | None:intergenic |
| AAGGTGTTAAGAGAAGTTGA+AGG | 0.567749 | 7_4:-3837340 | None:intergenic |
| TTGAGGTGGAAAAGAAGGGA+AGG | 0.568416 | 7_4:-3837359 | None:intergenic |
| CATGATCATCACGAAGTGCA+TGG | 0.573390 | 7_4:+3837885 | Msa1135930:CDS |
| AGCAAGGATTGGTGTGAAGG+TGG | 0.575668 | 7_4:+3839827 | Msa1135930:CDS |
| ATGATATAATATATATTCAG+AGG | 0.582448 | 7_4:-3837150 | None:intergenic |
| AGGTGTTAAGAGAAGTTGAA+GGG | 0.587354 | 7_4:-3837339 | None:intergenic |
| AAATTCAAAGCTCTTCTCAA+GGG | 0.589863 | 7_4:-3837985 | None:intergenic |
| TGATATAATATATATTCAGA+GGG | 0.597047 | 7_4:-3837149 | None:intergenic |
| AACCATATAGCAATTTGTCT+AGG | 0.597887 | 7_4:-3838065 | None:intergenic |
| ACATGAAACTATGAGGTGGT+GGG | 0.601396 | 7_4:-3837288 | None:intergenic |
| ATCAATGTTGCGAAACATGT+TGG | 0.606702 | 7_4:-3840074 | None:intergenic |
| TCTGATGATGGATTCCAAAG+TGG | 0.607438 | 7_4:+3837921 | Msa1135930:CDS |
| AATGAGGGTTCATGGAGCAA+TGG | 0.615463 | 7_4:+3839872 | Msa1135930:CDS |
| TTGCAGTTACAAACTTACAA+TGG | 0.616632 | 7_4:+3840261 | Msa1135930:three_prime_UTR |
| TAATCAGAAACTACAAGCAG+AGG | 0.617126 | 7_4:+3838196 | Msa1135930:CDS |
| AGTTGATCATGATCTTCATG+AGG | 0.620183 | 7_4:-3837316 | None:intergenic |
| AAATGATGCATCTATGTCCA+AGG | 0.620204 | 7_4:-3840115 | None:intergenic |
| TGCATAATGAAAGAAAATGA+GGG | 0.620651 | 7_4:+3839857 | Msa1135930:CDS |
| GGGTTAAACATGAAACTATG+AGG | 0.630990 | 7_4:-3837295 | None:intergenic |
| TGACCTTGTTGAAAGTGTTG+AGG | 0.631537 | 7_4:-3837376 | None:intergenic |
| GTTGATCATGATCTTCATGA+GGG | 0.635617 | 7_4:-3837315 | None:intergenic |
| GCATCTATGTCCAAGGCCAG+AGG | 0.638650 | 7_4:-3840108 | None:intergenic |
| AAGAGCAAGATGCAAAACAA+AGG | 0.656585 | 7_4:+3838097 | Msa1135930:CDS |
| GATGTGAATTGAAGAAGTTG+GGG | 0.704596 | 7_4:-3840022 | None:intergenic |
| TTAAACATGAAACTATGAGG+TGG | 0.709265 | 7_4:-3837292 | None:intergenic |
| GATATAATATATATTCAGAG+GGG | 0.740510 | 7_4:-3837148 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTATATCAATTACAA+AGG | - | chr7_4:3838977-3838996 | None:intergenic | 10.0% |
| !! | GTAATAAAGTAAAATAAATA+AGG | - | chr7_4:3839042-3839061 | None:intergenic | 10.0% |
| !!! | TTATTTTACTTTATTACTAT+TGG | + | chr7_4:3839045-3839064 | Msa1135930:intron | 10.0% |
| !! | TGATATAATATATATTCAGA+GGG | - | chr7_4:3837152-3837171 | None:intergenic | 15.0% |
| !! | ATGATATAATATATATTCAG+AGG | - | chr7_4:3837153-3837172 | None:intergenic | 15.0% |
| !! | TATCTCTTTATATCATAAAA+AGG | + | chr7_4:3837417-3837436 | Msa1135930:intron | 15.0% |
| !!! | ATTTAAAACAACAATAAAAC+CGG | - | chr7_4:3837446-3837465 | None:intergenic | 15.0% |
| !! | TTTAAATACCAATTTGTATT+TGG | + | chr7_4:3838793-3838812 | Msa1135930:intron | 15.0% |
| !! | TTAAATACCAATTTGTATTT+GGG | + | chr7_4:3838794-3838813 | Msa1135930:intron | 15.0% |
| !!! | ATACTCTTTTATATATATGA+TGG | - | chr7_4:3838820-3838839 | None:intergenic | 15.0% |
| !! | TAGTAAATTTGTATTGAAAT+TGG | + | chr7_4:3839445-3839464 | Msa1135930:intron | 15.0% |
| !! | TGACAACATTTATAATAATT+TGG | - | chr7_4:3839639-3839658 | None:intergenic | 15.0% |
| !! | GATATACAAAATCATTAATA+AGG | - | chr7_4:3840148-3840167 | None:intergenic | 15.0% |
| !! | GATATAATATATATTCAGAG+GGG | - | chr7_4:3837151-3837170 | None:intergenic | 20.0% |
| !! | TTATATCATAAAAAGGTAAC+CGG | + | chr7_4:3837424-3837443 | Msa1135930:intron | 20.0% |
| !!! | TAGCAATTTAAAACCATAAT+TGG | + | chr7_4:3837733-3837752 | Msa1135930:intron | 20.0% |
| !!! | AAATTCATAGTTCTGAATTA+TGG | - | chr7_4:3837779-3837798 | None:intergenic | 20.0% |
| !!! | ATTGATTTCTTCAACAAAAA+AGG | - | chr7_4:3837837-3837856 | None:intergenic | 20.0% |
| !!! | TTTTTCCATTTTTAATTGTG+GGG | - | chr7_4:3838596-3838615 | None:intergenic | 20.0% |
| !!! | CTTTTTCCATTTTTAATTGT+GGG | - | chr7_4:3838597-3838616 | None:intergenic | 20.0% |
| !! | CACAATTAAAAATGGAAAAA+GGG | + | chr7_4:3838596-3838615 | Msa1135930:intron | 20.0% |
| !!! | TAGTGTGCTATTATTTTAAT+TGG | + | chr7_4:3838621-3838640 | Msa1135930:intron | 20.0% |
| !! | TTAATTACTTTGATACACAA+AGG | - | chr7_4:3838675-3838694 | None:intergenic | 20.0% |
| !!! | GTAATTAATAGTGAAGTTTT+AGG | + | chr7_4:3838687-3838706 | Msa1135930:intron | 20.0% |
| !!! | TTTTAGGAGAAATTCATAAA+GGG | + | chr7_4:3838703-3838722 | Msa1135930:intron | 20.0% |
| !! | ATAAATTGATACATTTGTGT+TGG | + | chr7_4:3838992-3839011 | Msa1135930:intron | 20.0% |
| !! | GAAAGTTAAAATGTAGATAT+TGG | - | chr7_4:3839156-3839175 | None:intergenic | 20.0% |
| !!! | AAACATTAATTTGAAGCTAT+GGG | - | chr7_4:3839239-3839258 | None:intergenic | 20.0% |
| !!! | AAAACATTAATTTGAAGCTA+TGG | - | chr7_4:3839240-3839259 | None:intergenic | 20.0% |
| !! | TGGAACTAAAACAAATATAT+TGG | - | chr7_4:3839274-3839293 | None:intergenic | 20.0% |
| !! | TAAATTTGTATTGAAATTGG+TGG | + | chr7_4:3839448-3839467 | Msa1135930:intron | 20.0% |
| !!! | ACTTTTATGTTTTAACCTAA+TGG | + | chr7_4:3839776-3839795 | Msa1135930:intron | 20.0% |
| !! | TTTGTATATCATTGATCAAT+TGG | + | chr7_4:3840158-3840177 | Msa1135930:three_prime_UTR | 20.0% |
| ! | TGTGATAAATTCATGCAAAT+TGG | - | chr7_4:3837245-3837264 | None:intergenic | 25.0% |
| !! | ATGAAAGTATAGTCCAATTA+TGG | - | chr7_4:3837749-3837768 | None:intergenic | 25.0% |
| !!! | GAAGAAATCAATGTCATTTT+CGG | + | chr7_4:3837845-3837864 | Msa1135930:CDS | 25.0% |
| !!! | AAGAAATCAATGTCATTTTC+GGG | + | chr7_4:3837846-3837865 | Msa1135930:CDS | 25.0% |
| !! | ATTAGAAAAGAGAGAGTATA+GGG | - | chr7_4:3838239-3838258 | None:intergenic | 25.0% |
| !! | AATTAGAAAAGAGAGAGTAT+AGG | - | chr7_4:3838240-3838259 | None:intergenic | 25.0% |
| !! | TTTCATCTTGATTTGAATAC+AGG | + | chr7_4:3838367-3838386 | Msa1135930:intron | 25.0% |
| !! | ATTGAATATGAGAGTATGAT+AGG | + | chr7_4:3838511-3838530 | Msa1135930:intron | 25.0% |
| ! | ATAATCCCCACAATTAAAAA+TGG | + | chr7_4:3838588-3838607 | Msa1135930:intron | 25.0% |
| !!! | CCTTTTTCCATTTTTAATTG+TGG | - | chr7_4:3838598-3838617 | None:intergenic | 25.0% |
| ! | CCACAATTAAAAATGGAAAA+AGG | + | chr7_4:3838595-3838614 | Msa1135930:intron | 25.0% |
| !!! | GTTTTAGGAGAAATTCATAA+AGG | + | chr7_4:3838702-3838721 | Msa1135930:intron | 25.0% |
| ! | TTTAGGAGAAATTCATAAAG+GGG | + | chr7_4:3838704-3838723 | Msa1135930:intron | 25.0% |
| ! | ATGTGTTAAAGCATATTAGT+TGG | - | chr7_4:3839330-3839349 | None:intergenic | 25.0% |
| ! | AACTAATATGCTTTAACACA+TGG | + | chr7_4:3839329-3839348 | Msa1135930:intron | 25.0% |
| ! | TGACATAATCGAATTTAATC+AGG | + | chr7_4:3839512-3839531 | Msa1135930:intron | 25.0% |
| ! | TAGAATGTAACCTAATGTAT+CGG | + | chr7_4:3839680-3839699 | Msa1135930:intron | 25.0% |
| ! | ATGCATAATGAAAGAAAATG+AGG | + | chr7_4:3839856-3839875 | Msa1135930:CDS | 25.0% |
| ! | TGCATAATGAAAGAAAATGA+GGG | + | chr7_4:3839857-3839876 | Msa1135930:CDS | 25.0% |
| !! | TGTATTTTTCTGCAATACTA+AGG | - | chr7_4:3840215-3840234 | None:intergenic | 25.0% |
| ! | ACAGAAAAATGTGATTAATG+TGG | + | chr7_4:3840232-3840251 | Msa1135930:three_prime_UTR | 25.0% |
| AATATATATTCAGAGGGGTT+AGG | - | chr7_4:3837146-3837165 | None:intergenic | 30.0% | |
| TTAAACATGAAACTATGAGG+TGG | - | chr7_4:3837295-3837314 | None:intergenic | 30.0% | |
| !!! | GTTGTTTTAAATTGCAGTTG+CGG | + | chr7_4:3837454-3837473 | Msa1135930:intron | 30.0% |
| GAGTCCAATATAAGTTTCAA+AGG | - | chr7_4:3837565-3837584 | None:intergenic | 30.0% | |
| !!! | TAGCACTTTTTTGTTGTCTT+AGG | + | chr7_4:3837807-3837826 | Msa1135930:intron | 30.0% |
| GATGATGATTTATCTGATGA+TGG | + | chr7_4:3837909-3837928 | Msa1135930:CDS | 30.0% | |
| AAATTCAAAGCTCTTCTCAA+GGG | - | chr7_4:3837988-3838007 | None:intergenic | 30.0% | |
| !! | TTGAGAAGAGCTTTGAATTT+GGG | + | chr7_4:3837988-3838007 | Msa1135930:CDS | 30.0% |
| AACCATATAGCAATTTGTCT+AGG | - | chr7_4:3838068-3838087 | None:intergenic | 30.0% | |
| TTAAGTCGAAGAAGAATTTG+AGG | - | chr7_4:3838394-3838413 | None:intergenic | 30.0% | |
| CAATAATAGTTAATGACACG+TGG | - | chr7_4:3838442-3838461 | None:intergenic | 30.0% | |
| !! | TCTCTCTGGAGTAAAATATT+AGG | - | chr7_4:3838470-3838489 | None:intergenic | 30.0% |
| TGAATCAAGATCAAGATTCA+TGG | - | chr7_4:3838761-3838780 | None:intergenic | 30.0% | |
| CATGCAAAAACATATCACAA+TGG | - | chr7_4:3838873-3838892 | None:intergenic | 30.0% | |
| ! | GGTCACTTTATAAAGTCAAT+AGG | - | chr7_4:3839135-3839154 | None:intergenic | 30.0% |
| TTCTCTGCTTGATTAATTGT+TGG | + | chr7_4:3839173-3839192 | Msa1135930:intron | 30.0% | |
| TCTTCTTGTCAATTTCAACA+TGG | - | chr7_4:3839361-3839380 | None:intergenic | 30.0% | |
| TCTAAGAGAAATTTAGTGTC+TGG | + | chr7_4:3839553-3839572 | Msa1135930:intron | 30.0% | |
| GTTACAAGCATTAAAAAGCA+AGG | + | chr7_4:3839811-3839830 | Msa1135930:intron | 30.0% | |
| AAGCATTAAAAAGCAAGGAT+TGG | + | chr7_4:3839816-3839835 | Msa1135930:CDS | 30.0% | |
| TTGTTAGGGTTTAATGAAGT+TGG | - | chr7_4:3839998-3840017 | None:intergenic | 30.0% | |
| TGATGTGAATTGAAGAAGTT+GGG | - | chr7_4:3840026-3840045 | None:intergenic | 30.0% | |
| TTGATGTGAATTGAAGAAGT+TGG | - | chr7_4:3840027-3840046 | None:intergenic | 30.0% | |
| ! | CATAGATGCATCATTTTCAT+TGG | + | chr7_4:3840122-3840141 | Msa1135930:exon | 30.0% |
| TTGCAGTTACAAACTTACAA+TGG | + | chr7_4:3840261-3840280 | Msa1135930:three_prime_UTR | 30.0% | |
| CACATCACTAGCATTCAATA+TGG | + | chr7_4:3837261-3837280 | Msa1135930:exon | 35.0% | |
| GGGTTAAACATGAAACTATG+AGG | - | chr7_4:3837298-3837317 | None:intergenic | 35.0% | |
| GTTGATCATGATCTTCATGA+GGG | - | chr7_4:3837318-3837337 | None:intergenic | 35.0% | |
| AGTTGATCATGATCTTCATG+AGG | - | chr7_4:3837319-3837338 | None:intergenic | 35.0% | |
| AGGTGTTAAGAGAAGTTGAA+GGG | - | chr7_4:3837342-3837361 | None:intergenic | 35.0% | |
| ! | AAGGTGTTAAGAGAAGTTGA+AGG | - | chr7_4:3837343-3837362 | None:intergenic | 35.0% |
| TGACATAGCAACCACAATTA+TGG | - | chr7_4:3837533-3837552 | None:intergenic | 35.0% | |
| !! | GAGGCCTTTGAAACTTATAT+TGG | + | chr7_4:3837558-3837577 | Msa1135930:intron | 35.0% |
| TGAAACTTATATTGGACTCG+TGG | + | chr7_4:3837566-3837585 | Msa1135930:intron | 35.0% | |
| GTAGTCTGTAACCTTAATTG+CGG | + | chr7_4:3837598-3837617 | Msa1135930:intron | 35.0% | |
| ATATGTTGTGACCGCAATTA+AGG | - | chr7_4:3837612-3837631 | None:intergenic | 35.0% | |
| TCGTAGCATAATTACATCTG+CGG | + | chr7_4:3837705-3837724 | Msa1135930:intron | 35.0% | |
| CAAATTCAAAGCTCTTCTCA+AGG | - | chr7_4:3837989-3838008 | None:intergenic | 35.0% | |
| !! | CTTGAGAAGAGCTTTGAATT+TGG | + | chr7_4:3837987-3838006 | Msa1135930:CDS | 35.0% |
| ! | CAAGTTGCACTTTTCTTTGT+GGG | - | chr7_4:3838025-3838044 | None:intergenic | 35.0% |
| !! | AAGAAAAGTGCAACTTGCTA+AGG | + | chr7_4:3838028-3838047 | Msa1135930:CDS | 35.0% |
| AGCCTAGACAAATTGCTATA+TGG | + | chr7_4:3838063-3838082 | Msa1135930:CDS | 35.0% | |
| AAGAGCAAGATGCAAAACAA+AGG | + | chr7_4:3838097-3838116 | Msa1135930:CDS | 35.0% | |
| CAGCTTCAAATTTCTTCTTG+AGG | - | chr7_4:3838145-3838164 | None:intergenic | 35.0% | |
| ! | GAAGAAATTTGAAGCTGTCA+AGG | + | chr7_4:3838148-3838167 | Msa1135930:CDS | 35.0% |
| TAATCAGAAACTACAAGCAG+AGG | + | chr7_4:3838196-3838215 | Msa1135930:CDS | 35.0% | |
| GAAATTCATAAAGGGGAACA+TGG | + | chr7_4:3838711-3838730 | Msa1135930:intron | 35.0% | |
| ATGATGGCCCAAATACAAAT+TGG | - | chr7_4:3838804-3838823 | None:intergenic | 35.0% | |
| GTGTTGGAAGATAGAAAGAA+AGG | + | chr7_4:3839008-3839027 | Msa1135930:intron | 35.0% | |
| !! | ATACTGACTCTTCACTAGAA+TGG | - | chr7_4:3839199-3839218 | None:intergenic | 35.0% |
| ATGTCTTGTGCTTAGAAACA+TGG | - | chr7_4:3839294-3839313 | None:intergenic | 35.0% | |
| TTGAATGCAACTTCGTATGT+TGG | - | chr7_4:3839603-3839622 | None:intergenic | 35.0% | |
| ATGTTGTCATGTTTGTGCAT+CGG | + | chr7_4:3839650-3839669 | Msa1135930:intron | 35.0% | |
| TGAAAGAAAATGAGGGTTCA+TGG | + | chr7_4:3839864-3839883 | Msa1135930:CDS | 35.0% | |
| ! | AGTTCTGTTTCTTCACAGAA+TGG | + | chr7_4:3839950-3839969 | Msa1135930:CDS | 35.0% |
| !! | AAGTTGGTAGAAGGCTAATT+AGG | - | chr7_4:3839982-3840001 | None:intergenic | 35.0% |
| !! | GGTTTAATGAAGTTGGTAGA+AGG | - | chr7_4:3839991-3840010 | None:intergenic | 35.0% |
| GAAGTTGGGGTATATTGTTA+GGG | - | chr7_4:3840012-3840031 | None:intergenic | 35.0% | |
| AGAAGTTGGGGTATATTGTT+AGG | - | chr7_4:3840013-3840032 | None:intergenic | 35.0% | |
| GATGTGAATTGAAGAAGTTG+GGG | - | chr7_4:3840025-3840044 | None:intergenic | 35.0% | |
| ! | AAGTTTTCATCTTGGAGATC+TGG | - | chr7_4:3840052-3840071 | None:intergenic | 35.0% |
| !! | TGTTGGTGAAGTTTTCATCT+TGG | - | chr7_4:3840060-3840079 | None:intergenic | 35.0% |
| ATCAATGTTGCGAAACATGT+TGG | - | chr7_4:3840077-3840096 | None:intergenic | 35.0% | |
| AAATGATGCATCTATGTCCA+AGG | - | chr7_4:3840118-3840137 | None:intergenic | 35.0% | |
| ACATGAAACTATGAGGTGGT+GGG | - | chr7_4:3837291-3837310 | None:intergenic | 40.0% | |
| AACATGAAACTATGAGGTGG+TGG | - | chr7_4:3837292-3837311 | None:intergenic | 40.0% | |
| ! | AGTGTTGAGGTGGAAAAGAA+GGG | - | chr7_4:3837366-3837385 | None:intergenic | 40.0% |
| !! | AAGTGTTGAGGTGGAAAAGA+AGG | - | chr7_4:3837367-3837386 | None:intergenic | 40.0% |
| !! | TGACCTTGTTGAAAGTGTTG+AGG | - | chr7_4:3837379-3837398 | None:intergenic | 40.0% |
| AACCACAATTATGGTCGCAT+CGG | - | chr7_4:3837524-3837543 | None:intergenic | 40.0% | |
| ! | TGCGGTCACAACATATTTTG+AGG | + | chr7_4:3837616-3837635 | Msa1135930:intron | 40.0% |
| AACCACAATTAAAGCCGCAT+TGG | + | chr7_4:3837657-3837676 | Msa1135930:intron | 40.0% | |
| TGCTACGAACGTTTATGTTG+CGG | - | chr7_4:3837693-3837712 | None:intergenic | 40.0% | |
| !! | TCTGATGATGGATTCCAAAG+TGG | + | chr7_4:3837921-3837940 | Msa1135930:CDS | 40.0% |
| TCTTCTTCTTCTCTCCACTT+TGG | - | chr7_4:3837938-3837957 | None:intergenic | 40.0% | |
| GAAGAAGATCAGGCTGAATT+TGG | + | chr7_4:3837950-3837969 | Msa1135930:CDS | 40.0% | |
| ! | GCAAGTTGCACTTTTCTTTG+TGG | - | chr7_4:3838026-3838045 | None:intergenic | 40.0% |
| !! | TGCAACTTGCTAAGGCTTTA+GGG | + | chr7_4:3838036-3838055 | Msa1135930:CDS | 40.0% |
| GAAACTACAAGCAGAGGTAA+AGG | + | chr7_4:3838202-3838221 | Msa1135930:intron | 40.0% | |
| AAATCACTTCTCTCTCTCTC+TGG | - | chr7_4:3838484-3838503 | None:intergenic | 40.0% | |
| TTCATAAAGGGGAACATGGT+TGG | + | chr7_4:3838715-3838734 | Msa1135930:intron | 40.0% | |
| !! | TTCGTATGTTGGTCTTGTGT+CGG | - | chr7_4:3839592-3839611 | None:intergenic | 40.0% |
| GTCTAACACACCGATACATT+AGG | - | chr7_4:3839693-3839712 | None:intergenic | 40.0% | |
| AACTGCAATGCAACACCATT+AGG | - | chr7_4:3839794-3839813 | None:intergenic | 40.0% | |
| ! | AAAAGCAAGGATTGGTGTGA+AGG | + | chr7_4:3839824-3839843 | Msa1135930:CDS | 40.0% |
| TTGAGGTGGAAAAGAAGGGA+AGG | - | chr7_4:3837362-3837381 | None:intergenic | 45.0% | |
| !! | CCTTGTTGAAAGTGTTGAGG+TGG | - | chr7_4:3837376-3837395 | None:intergenic | 45.0% |
| CCACCTCAACACTTTCAACA+AGG | + | chr7_4:3837373-3837392 | Msa1135930:CDS | 45.0% | |
| ! | GTCGCATCGGTCATAATTGT+CGG | - | chr7_4:3837511-3837530 | None:intergenic | 45.0% |
| ! | GACCAATGCGGCTTTAATTG+TGG | - | chr7_4:3837662-3837681 | None:intergenic | 45.0% |
| GCTACGAACGTTTATGTTGC+GGG | - | chr7_4:3837692-3837711 | None:intergenic | 45.0% | |
| CATGATCATCACGAAGTGCA+TGG | + | chr7_4:3837885-3837904 | Msa1135930:CDS | 45.0% | |
| GTGGAGAGAAGAAGAAGATC+AGG | + | chr7_4:3837940-3837959 | Msa1135930:CDS | 45.0% | |
| GCTGAATTTGGATCAAGTGC+AGG | + | chr7_4:3837962-3837981 | Msa1135930:CDS | 45.0% | |
| !! | GTGCAACTTGCTAAGGCTTT+AGG | + | chr7_4:3838035-3838054 | Msa1135930:CDS | 45.0% |
| ATAAAGGGGAACATGGTTGG+AGG | + | chr7_4:3838718-3838737 | Msa1135930:intron | 45.0% | |
| !! | TGTTGGTCTTGTGTCGGTAT+CGG | - | chr7_4:3839586-3839605 | None:intergenic | 45.0% |
| AATGAGGGTTCATGGAGCAA+TGG | + | chr7_4:3839872-3839891 | Msa1135930:CDS | 45.0% | |
| TTGATGAGCATCAGAACCTC+TGG | + | chr7_4:3840092-3840111 | Msa1135930:CDS | 45.0% | |
| GGGTTAGGCACTCACTTTCA+TGG | - | chr7_4:3837131-3837150 | None:intergenic | 50.0% | |
| GACCGATGCGACCATAATTG+TGG | + | chr7_4:3837519-3837538 | Msa1135930:intron | 50.0% | |
| TGGTTGCTATGTCATCGCAG+AGG | + | chr7_4:3837539-3837558 | Msa1135930:intron | 50.0% | |
| GCGGGAAAATGTGACCAATG+CGG | - | chr7_4:3837674-3837693 | None:intergenic | 50.0% | |
| ! | AGCAAGGATTGGTGTGAAGG+TGG | + | chr7_4:3839827-3839846 | Msa1135930:CDS | 50.0% |
| AGCATCAGAACCTCTGGCCT+TGG | + | chr7_4:3840098-3840117 | Msa1135930:CDS | 55.0% | |
| GCATCTATGTCCAAGGCCAG+AGG | - | chr7_4:3840111-3840130 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 3837115 | 3840290 | 3837115 | ID=Msa1135930;Name=Msa1135930 |
| chr7_4 | mRNA | 3837115 | 3840290 | 3837115 | ID=Msa1135930-mRNA-1;Parent=Msa1135930;Name=Msa1135930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=165|1|0.66|1|1|1|3|164|272 |
| chr7_4 | exon | 3837115 | 3837394 | 3837115 | ID=Msa1135930-mRNA-1:exon:1062;Parent=Msa1135930-mRNA-1 |
| chr7_4 | exon | 3837829 | 3838217 | 3837829 | ID=Msa1135930-mRNA-1:exon:1063;Parent=Msa1135930-mRNA-1 |
| chr7_4 | exon | 3839812 | 3840290 | 3839812 | ID=Msa1135930-mRNA-1:exon:1064;Parent=Msa1135930-mRNA-1 |
| chr7_4 | five_prime_UTR | 3837115 | 3837279 | 3837115 | ID=Msa1135930-mRNA-1:five_prime_utr;Parent=Msa1135930-mRNA-1 |
| chr7_4 | CDS | 3837280 | 3837394 | 3837280 | ID=Msa1135930-mRNA-1:cds;Parent=Msa1135930-mRNA-1 |
| chr7_4 | CDS | 3837829 | 3838217 | 3837829 | ID=Msa1135930-mRNA-1:cds;Parent=Msa1135930-mRNA-1 |
| chr7_4 | CDS | 3839812 | 3840126 | 3839812 | ID=Msa1135930-mRNA-1:cds;Parent=Msa1135930-mRNA-1 |
| chr7_4 | three_prime_UTR | 3840127 | 3840290 | 3840127 | ID=Msa1135930-mRNA-1:three_prime_utr;Parent=Msa1135930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
