AlfalfaGEDB | Msa1137550

M. sativa cultivar zhongmu-4 / Msa1137550

KEGG: K04454|K09260|K12412
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1137550	XP_013465623.1	97.159	176	5	0	1	176	1	176	4.42e-124	357

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1137550	sp\|Q9FKK2\|AGL62_ARATH	36.905	168	99	2	8	168	3	170	7.38e-31	116

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1137550	A0A072VC91	97.159	176	5	0	1	176	1	176	2.11e-124	357

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TFs/TRs:

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Gene ID	Type	Classification
Msa1137550	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1137550	MtrunA17_Chr2g0333981	97.159	176	5	0	1	176	1	176	4.07e-128	357
Msa1137550	MtrunA17_Chr4g0071601	84.409	186	19	2	1	176	1	186	7.95e-103	293
Msa1137550	MtrunA17_Chr8g0379021	70.060	167	50	0	1	167	1	167	1.68e-85	249
Msa1137550	MtrunA17_Chr4g0018951	65.644	163	48	2	1	163	1	155	4.16e-67	202
Msa1137550	MtrunA17_Chr3g0099421	40.351	171	92	2	8	171	30	197	2.87e-40	137
Msa1137550	MtrunA17_Chr1g0206701	39.306	173	95	2	8	173	5	174	3.00e-40	136
Msa1137550	MtrunA17_Chr1g0149391	38.728	173	96	2	8	173	5	174	3.65e-40	135
Msa1137550	MtrunA17_Chr1g0206991	38.150	173	97	2	8	173	5	174	6.23e-40	133
Msa1137550	MtrunA17_Chr8g0355091	39.766	171	93	3	8	171	5	172	3.09e-39	133
Msa1137550	MtrunA17_Chr1g0206721	38.012	171	96	2	8	171	5	172	1.72e-38	131

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1137550	AT5G60440.1	36.905	168	99	2	8	168	3	170	7.50e-32	116
Msa1137550	AT2G24840.1	37.975	158	93	3	10	162	61	218	7.86e-30	110
Msa1137550	AT1G65360.1	35.758	165	103	2	8	169	3	167	2.45e-27	102
Msa1137550	AT1G01530.1	36.905	168	95	4	8	168	3	166	4.61e-25	97.4
Msa1137550	AT4G36590.1	33.333	162	96	3	12	162	7	167	1.82e-22	90.9
Msa1137550	AT2G34440.1	35.374	147	83	4	11	150	1	142	2.76e-22	88.6
Msa1137550	AT1G28460.1	35.503	169	94	4	8	165	4	168	3.85e-22	88.2
Msa1137550	AT3G66656.1	42.400	125	56	3	11	123	1	121	1.31e-21	87.0
Msa1137550	AT1G29962.1	34.302	172	95	5	8	165	4	171	5.47e-21	85.5
Msa1137550	AT2G42830.2	38.281	128	63	4	4	127	9	124	7.83e-20	84.0

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Find 32 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTAAAGTTTGTCACC+AGG	0.603204	7_4:-6378398	None:intergenic
AACAGTAAAGTTTGTCACCA+GGG	0.588561	7_4:-6378397	None:intergenic
AACCAAAGAAAGAAGAACAT+GGG	0.601697	7_4:+6378233	Msa1137550:CDS
AAGGAGGAAGCTTGTTGAAA+GGG	0.480405	7_4:+6378691	Msa1137550:CDS
ACAGTAAAGTTTGTCACCAG+GGG	0.658943	7_4:-6378396	None:intergenic
ACCAAAGAAAGAAGAACATG+GGG	0.674096	7_4:+6378234	Msa1137550:CDS
ACCAGGGGAAAACACAATGA+TGG	0.576978	7_4:-6378381	None:intergenic
ACTAGAAGATGTTCAAAATA+TGG	0.311297	7_4:+6378574	Msa1137550:CDS
AGATTACAATAGACAATATG+AGG	0.522743	7_4:+6378517	Msa1137550:CDS
ATTGAGGACAACGTTAGTGT+CGG	0.575860	7_4:-6378429	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAACCAAAGAAAGAAGAACA+TGG	+	chr7_4:6378232-6378251	Msa1137550:CDS	30.0%
AACCAAAGAAAGAAGAACAT+GGG	+	chr7_4:6378233-6378252	Msa1137550:CDS	30.0%
ACTTTCTCAAAAAGAAGACA+AGG	+	chr7_4:6378308-6378327	Msa1137550:CDS	30.0%
CTATTGTAATCTTTGCAAGT+CGG	-	chr7_4:6378509-6378528	None:intergenic	30.0%
TTACAATAGACAATATGAGG+AGG	+	chr7_4:6378520-6378539	Msa1137550:CDS	30.0%
TGATCAGCTTGAACAATTTA+TGG	+	chr7_4:6378652-6378671	Msa1137550:CDS	30.0%
ACCAAAGAAAGAAGAACATG+GGG	+	chr7_4:6378234-6378253	Msa1137550:CDS	35.0%
TGAGAAAGTGACAAGTTTGT+TGG	-	chr7_4:6378297-6378316	None:intergenic	35.0%
AACAGTAAAGTTTGTCACCA+GGG	-	chr7_4:6378400-6378419	None:intergenic	35.0%
AAACAGTAAAGTTTGTCACC+AGG	-	chr7_4:6378401-6378420	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	6378221	6378751	6378221	ID=Msa1137550;Name=Msa1137550
chr7_4	mRNA	6378221	6378751	6378221	ID=Msa1137550-mRNA-1;Parent=Msa1137550;Name=Msa1137550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|176
chr7_4	exon	6378221	6378751	6378221	ID=Msa1137550-mRNA-1:exon:1750;Parent=Msa1137550-mRNA-1
chr7_4	CDS	6378221	6378751	6378221	ID=Msa1137550-mRNA-1:cds;Parent=Msa1137550-mRNA-1

Gene Sequence

>Msa1137550

ATGGATATGGTTAACCAAAGAAAGAAGAACATGGGGCGCCAGAAGATTGAGATCAAGAAGGTTGAGAAAGATTCCAACAAACTTGTCACTTTCTCAAAAAGAAGACAAGGTTTATTCAGAAAAGCAAGCGAACTTTGTGTCTTATGTGATGTTCATGCAGCCATCATTGTGTTTTCCCCTGGTGACAAACTTTACTGTTTTGGTCAACCCGACACTAACGTTGTCCTCAATAGCTACGTCAAAGGAACCACTGAGTTTGAGGATTCAAAGTCAACTGAAAATTTTCCGACTTGCAAAGATTACAATAGACAATATGAGGAGGCGCAAAAGACGTTGGAGACGGAAAAGAAGAAACTAGAAGATGTTCAAAATATGGCTAAGATTTTCAACAAGGGTGACTGGTGGAATGATTCAATTGATGATATGAGTAGTGATCAGCTTGAACAATTTATGGTGTCCATTTACGAGTTAAGGAGGAAGCTTGTTGAAAGGGCTGATGAACTTGTCATGAAGCAAAGTGTCATGCCCTAG

Protein sequence

>Msa1137550

MDMVNQRKKNMGRQKIEIKKVEKDSNKLVTFSKRRQGLFRKASELCVLCDVHAAIIVFSPGDKLYCFGQPDTNVVLNSYVKGTTEFEDSKSTENFPTCKDYNRQYEEAQKTLETEKKKLEDVQNMAKIFNKGDWWNDSIDDMSSDQLEQFMVSIYELRRKLVERADELVMKQSVMP*