AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1138070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1138070 MtrunA17_Chr7g0220111 90.775 271 3 1 1 271 1 249 0.0 497
Msa1138070 MtrunA17_Chr6g0455511 80.882 272 29 4 1 271 1 250 5.92e-157 436
Msa1138070 MtrunA17_Chr3g0122251 59.124 274 79 6 1 270 1 245 5.04e-102 297
Msa1138070 MtrunA17_Chr5g0420091 56.250 240 79 4 1 239 1 215 1.50e-86 257
Msa1138070 MtrunA17_Chr4g0061671 66.471 170 56 1 1 170 1 169 4.14e-76 229
Msa1138070 MtrunA17_Chr8g0351051 46.520 273 122 8 1 271 1 251 3.68e-68 211
Msa1138070 MtrunA17_Chr4g0061691 59.172 169 68 1 1 168 1 169 2.00e-59 188
Msa1138070 MtrunA17_Chr6g0474371 51.099 182 86 2 1 179 1 182 2.43e-54 174
Msa1138070 MtrunA17_Chr8g0377551 50.476 210 71 7 63 270 1 179 3.47e-54 173
Msa1138070 MtrunA17_Chr8g0366231 52.976 168 78 1 1 167 1 168 5.86e-54 174
Msa1138070 MtrunA17_Chr7g0220121 48.045 179 90 2 1 178 1 177 1.94e-49 164
Msa1138070 MtrunA17_Chr1g0204111 49.419 172 84 2 1 170 17 187 3.40e-49 163
Msa1138070 MtrunA17_Chr5g0420081 49.444 180 90 1 1 179 1 180 5.72e-49 162
Msa1138070 MtrunA17_Chr4g0057151 50.000 168 82 2 1 167 1 167 5.24e-47 155
Msa1138070 MtrunA17_Chr3g0077501 44.954 218 107 8 1 212 1 211 1.86e-46 155
Msa1138070 MtrunA17_Chr8g0380021 46.784 171 89 2 1 170 17 186 1.21e-44 151
Msa1138070 MtrunA17_Chr2g0284911 46.199 171 90 2 1 170 16 185 1.92e-43 148
Msa1138070 MtrunA17_Chr8g0351031 47.458 177 80 4 1 170 1 171 2.58e-43 147
Msa1138070 MtrunA17_Chr3g0097101 47.368 171 88 2 1 170 16 185 2.80e-43 147
Msa1138070 MtrunA17_Chr7g0246431 49.112 169 84 2 1 168 1 168 4.25e-43 146
Msa1138070 MtrunA17_Chr2g0279821 44.706 170 93 1 1 170 1 169 4.56e-41 141
Msa1138070 MtrunA17_Chr8g0351041 46.707 167 76 4 1 160 1 161 5.89e-40 136
Msa1138070 MtrunA17_Chr5g0411691 43.713 167 92 2 1 167 1 165 9.06e-39 135
Msa1138070 MtrunA17_Chr4g0049541 42.353 170 97 1 1 170 1 169 2.22e-37 131
Msa1138070 MtrunA17_Chr4g0018421 43.787 169 93 2 1 167 1 169 2.51e-37 130
Msa1138070 MtrunA17_Chr8g0377561 96.721 61 2 0 1 61 1 61 6.12e-36 124
Msa1138070 MtrunA17_Chr1g0164791 40.805 174 96 3 1 168 1 173 1.99e-35 127
Msa1138070 MtrunA17_Chr5g0427401 43.195 169 90 3 1 167 1 165 1.67e-33 121
Msa1138070 MtrunA17_Chr3g0125241 44.828 145 75 2 1 144 26 166 3.28e-33 120
Msa1138070 MtrunA17_Chr7g0246381 80.882 68 13 0 1 68 1 68 4.62e-33 115
Msa1138070 MtrunA17_Chr5g0412271 39.785 186 96 4 1 181 1 175 3.40e-32 118
Msa1138070 MtrunA17_Chr4g0020221 46.988 166 80 4 1 160 1 164 4.64e-32 118
Msa1138070 MtrunA17_Chr5g0412461 41.860 172 90 3 1 167 1 167 1.73e-31 116
Msa1138070 MtrunA17_Chr2g0308251 66.667 75 25 0 1 75 1 75 1.98e-29 106
Msa1138070 MtrunA17_Chr3g0142191 42.405 158 85 3 1 157 1 153 3.45e-29 110
Msa1138070 MtrunA17_Chr1g0159661 39.645 169 93 3 1 168 1 161 7.72e-29 108
Msa1138070 MtrunA17_Chr5g0404951 41.558 154 75 5 1 146 1 147 1.47e-27 106
Msa1138070 MtrunA17_Chr4g0049901 37.056 197 113 5 1 189 27 220 8.44e-27 104
Msa1138070 MtrunA17_Chr1g0173161 78.333 60 13 0 1 60 1 60 2.79e-26 98.6
Msa1138070 MtrunA17_Chr5g0427921 65.000 60 21 0 1 60 1 60 5.00e-24 92.0
Msa1138070 MtrunA17_Chr4g0044071 64.912 57 20 0 1 57 1 57 4.81e-21 85.9
Msa1138070 MtrunA17_Chr5g0425191 66.667 57 19 0 1 57 1 57 1.59e-20 84.0
Msa1138070 MtrunA17_Chr3g0134451 57.143 70 30 0 1 70 1 70 1.73e-20 89.0
Msa1138070 MtrunA17_Chr2g0308271 39.516 124 74 1 57 179 28 151 4.20e-19 83.2
Msa1138070 MtrunA17_Chr1g0166611 80.000 45 9 0 16 60 20 64 1.20e-18 80.1
Msa1138070 MtrunA17_Chr2g0292791 52.174 69 32 1 2 70 9 76 3.28e-17 78.6
Msa1138070 MtrunA17_Chr2g0325971 50.704 71 32 2 2 70 7 76 9.76e-17 77.0
Msa1138070 MtrunA17_Chr1g0208561 50.704 71 32 2 2 70 7 76 1.12e-16 77.0
Msa1138070 MtrunA17_Chr3g0089141 50.704 71 32 2 2 70 7 76 1.35e-16 76.6
Msa1138070 MtrunA17_Chr1g0208581 50.704 71 32 2 2 70 7 76 1.39e-16 76.6
Msa1138070 MtrunA17_Chr3g0099421 52.174 69 32 1 2 70 34 101 2.83e-16 76.6
Msa1138070 MtrunA17_Chr8g0379021 36.364 143 70 6 2 127 12 150 3.19e-16 74.7
Msa1138070 MtrunA17_Chr3g0099411 49.275 69 34 1 2 70 9 76 1.04e-15 73.9
Msa1138070 MtrunA17_Chr8g0355091 49.275 69 34 1 2 70 9 76 1.28e-15 74.3
Msa1138070 MtrunA17_Chr5g0419601 51.429 70 33 1 1 70 8 76 1.52e-15 73.9
Msa1138070 MtrunA17_Chr1g0206721 49.275 69 34 1 2 70 9 76 1.71e-15 73.9
Msa1138070 MtrunA17_Chr1g0206701 49.275 69 34 1 2 70 9 76 1.75e-15 73.9
Msa1138070 MtrunA17_Chr2g0333981 34.043 141 78 4 1 127 11 150 2.51e-15 72.0
Msa1138070 MtrunA17_Chr1g0149391 50.725 69 33 1 2 70 9 76 3.69e-15 72.8
Msa1138070 MtrunA17_Chr8g0357771 31.609 174 102 4 1 167 1 164 4.17e-15 71.6
Msa1138070 MtrunA17_Chr2g0317451 50.725 69 33 1 2 70 9 76 5.23e-15 72.4
Msa1138070 MtrunA17_Chr2g0317481 50.725 69 33 1 2 70 9 76 5.49e-15 72.4
Msa1138070 MtrunA17_Chr1g0187361 47.826 69 35 1 2 70 9 76 6.01e-15 72.4
Msa1138070 MtrunA17_Chr8g0376821 52.632 57 27 0 1 57 1 57 9.27e-15 70.9
Msa1138070 MtrunA17_Chr5g0417661 54.717 53 24 0 1 53 56 108 1.51e-14 68.9
Msa1138070 MtrunA17_Chr1g0188671 47.826 69 35 1 2 70 47 114 2.55e-14 71.2
Msa1138070 MtrunA17_Chr1g0169761 52.632 57 27 0 1 57 1 57 2.68e-14 69.3
Msa1138070 MtrunA17_Chr1g0206991 46.377 69 36 1 2 70 9 76 3.26e-14 69.3
Msa1138070 MtrunA17_Chr4g0052061 47.541 61 32 0 1 61 1 61 3.67e-14 68.6
Msa1138070 MtrunA17_Chr5g0422941 49.275 69 34 1 2 70 9 76 4.69e-14 69.7
Msa1138070 MtrunA17_Chr1g0175611 50.877 57 28 0 1 57 1 57 6.22e-14 68.2
Msa1138070 MtrunA17_Chr5g0422421 49.275 69 34 1 2 70 9 76 7.83e-14 69.3
Msa1138070 MtrunA17_Chr1g0180591 49.123 57 29 0 1 57 1 57 1.11e-13 67.8
Msa1138070 MtrunA17_Chr4g0074101 49.123 57 29 0 1 57 1 57 1.61e-13 67.8
Msa1138070 MtrunA17_Chr1g0175601 50.877 57 28 0 1 57 1 57 2.54e-13 66.6
Msa1138070 MtrunA17_Chr2g0300441 46.479 71 35 2 2 70 7 76 4.42e-13 67.0
Msa1138070 MtrunA17_Chr4g0018951 36.232 138 77 6 16 147 26 158 5.36e-13 65.5
Msa1138070 MtrunA17_Chr2g0300421 51.724 58 26 1 2 57 7 64 7.26e-13 65.5
Msa1138070 MtrunA17_Chr4g0060841 50.943 53 26 0 1 53 1 53 8.61e-13 67.4
Msa1138070 MtrunA17_Chr3g0089151 43.478 69 38 1 2 70 9 76 1.12e-12 63.9
Msa1138070 MtrunA17_Chr4g0052081 45.763 59 32 0 1 59 1 59 1.66e-12 64.3
Msa1138070 MtrunA17_Chr3g0119901 41.429 70 40 1 1 70 8 76 2.47e-12 64.7
Msa1138070 MtrunA17_Chr5g0427961 33.645 107 71 0 61 167 4 110 4.79e-12 62.8
Msa1138070 MtrunA17_Chr8g0356071 44.262 61 34 0 1 61 1 61 5.71e-12 62.8
Msa1138070 MtrunA17_Chr3g0085241 41.429 70 40 1 1 70 40 108 7.40e-12 63.9
Msa1138070 MtrunA17_Chr3g0111841 51.852 54 26 0 8 61 2 55 8.60e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1138070 AT3G02310.1 66.788 274 64 5 1 271 1 250 3.25e-125 357
Msa1138070 AT5G15800.1 68.116 276 58 6 1 271 1 251 2.68e-118 339
Msa1138070 AT5G15800.2 66.549 284 60 7 1 271 1 262 4.66e-117 336
Msa1138070 AT3G02310.2 83.708 178 28 1 1 177 1 178 2.20e-104 302
Msa1138070 AT1G24260.1 57.875 273 82 4 1 270 1 243 2.51e-97 286
Msa1138070 AT1G24260.2 57.664 274 82 4 1 270 1 244 3.80e-97 285
Msa1138070 AT1G24260.3 55.474 274 74 4 1 270 1 230 1.09e-89 266
Msa1138070 AT2G03710.1 51.103 272 118 4 1 271 1 258 7.69e-85 254
Msa1138070 AT2G03710.2 51.103 272 117 5 1 271 1 257 3.97e-83 250
Msa1138070 AT2G03710.3 66.667 168 55 1 1 167 1 168 4.12e-76 229
Msa1138070 AT2G45650.1 45.878 279 116 7 1 271 1 252 2.45e-67 209
Msa1138070 AT1G69120.2 53.846 169 77 1 1 168 1 169 8.94e-57 182
Msa1138070 AT1G69120.1 53.846 169 77 1 1 168 1 169 5.65e-56 181
Msa1138070 AT1G26310.1 54.971 171 74 1 1 168 1 171 4.81e-55 178
Msa1138070 AT5G60910.1 53.571 168 77 1 1 167 1 168 1.49e-53 174
Msa1138070 AT3G61120.1 51.136 176 84 2 1 176 1 174 6.91e-52 170
Msa1138070 AT4G09960.1 44.231 208 110 5 1 205 1 205 9.29e-50 164
Msa1138070 AT4G09960.6 44.231 208 110 5 1 205 2 206 9.56e-50 164
Msa1138070 AT4G09960.5 44.231 208 110 5 1 205 11 215 1.71e-49 164
Msa1138070 AT4G09960.3 44.231 208 110 5 1 205 27 231 5.38e-49 163
Msa1138070 AT2G45660.1 50.000 172 82 3 1 170 1 170 1.13e-46 155
Msa1138070 AT4G09960.2 52.778 144 64 3 1 142 1 142 2.19e-46 155
Msa1138070 AT4G09960.4 49.367 158 76 3 1 156 96 251 2.87e-46 158
Msa1138070 AT3G30260.1 51.948 154 69 2 1 151 1 152 3.30e-46 155
Msa1138070 AT2G45660.2 50.633 158 74 3 1 156 1 156 1.01e-44 149
Msa1138070 AT3G58780.1 47.093 172 87 3 1 170 16 185 1.88e-44 151
Msa1138070 AT3G58780.5 47.093 172 87 3 1 170 22 191 2.31e-44 150
Msa1138070 AT2G42830.1 49.375 160 75 4 1 157 16 172 7.73e-44 149
Msa1138070 AT4G11880.2 51.282 156 76 0 1 156 1 156 1.08e-43 147
Msa1138070 AT4G11880.3 51.282 156 76 0 1 156 1 156 1.08e-43 147
Msa1138070 AT4G18960.1 46.784 171 87 3 2 170 18 186 3.36e-43 147
Msa1138070 AT2G42830.2 49.057 159 75 4 1 156 16 171 3.70e-43 147
Msa1138070 AT4G22950.2 47.904 167 86 1 1 167 1 166 2.32e-42 143
Msa1138070 AT4G11880.4 53.425 146 68 0 1 146 1 146 3.40e-42 144
Msa1138070 AT4G11880.1 53.425 146 68 0 1 146 1 146 3.40e-42 144
Msa1138070 AT4G22950.3 42.640 197 107 2 1 197 1 191 3.47e-42 144
Msa1138070 AT4G22950.1 42.640 197 107 2 1 197 1 191 3.47e-42 144
Msa1138070 AT3G58780.2 45.930 172 82 3 1 170 16 178 4.42e-42 144
Msa1138070 AT3G58780.4 50.327 153 72 3 1 151 16 166 1.19e-41 144
Msa1138070 AT3G57230.1 46.584 161 84 2 1 161 1 159 8.17e-41 141
Msa1138070 AT3G57230.4 46.584 161 84 2 1 161 1 159 8.17e-41 141
Msa1138070 AT4G37940.1 43.529 170 95 1 1 170 1 169 1.09e-40 140
Msa1138070 AT3G58780.3 41.327 196 88 3 1 170 16 210 2.41e-40 141
Msa1138070 AT5G62165.3 44.944 178 92 3 1 177 1 173 1.65e-39 137
Msa1138070 AT5G62165.1 44.944 178 92 3 1 177 1 173 1.65e-39 137
Msa1138070 AT5G62165.2 44.944 178 92 3 1 177 1 173 1.65e-39 137
Msa1138070 AT3G57230.2 48.252 143 73 1 1 143 1 142 5.30e-39 133
Msa1138070 AT4G37940.4 42.697 178 97 2 1 178 1 173 3.94e-38 133
Msa1138070 AT2G14210.1 44.311 167 93 0 1 167 1 167 9.68e-38 133
Msa1138070 AT2G14210.2 44.311 167 93 0 1 167 1 167 1.13e-37 133
Msa1138070 AT5G62165.17 46.497 157 82 2 1 156 1 156 1.59e-37 130
Msa1138070 AT5G62165.12 46.497 157 82 2 1 156 1 156 1.59e-37 130
Msa1138070 AT5G62165.11 46.497 157 82 2 1 156 1 156 1.59e-37 130
Msa1138070 AT4G37940.3 47.183 142 74 1 1 142 1 141 9.30e-37 129
Msa1138070 AT2G22630.1 41.176 170 99 1 1 170 1 169 1.11e-36 130
Msa1138070 AT2G22630.2 41.176 170 99 1 1 170 1 169 1.11e-36 130
Msa1138070 AT5G23260.2 42.857 168 93 2 1 167 1 166 2.40e-36 130
Msa1138070 AT5G23260.4 42.857 168 93 2 1 167 17 182 3.40e-36 130
Msa1138070 AT5G51870.1 43.195 169 93 2 1 167 1 168 7.28e-36 127
Msa1138070 AT5G62165.6 46.259 147 77 2 1 146 1 146 1.46e-35 125
Msa1138070 AT5G62165.9 46.259 147 77 2 1 146 1 146 1.46e-35 125
Msa1138070 AT5G62165.7 46.259 147 77 2 1 146 1 146 1.46e-35 125
Msa1138070 AT5G62165.8 46.259 147 77 2 1 146 1 146 1.46e-35 125
Msa1138070 AT5G62165.13 46.259 147 77 2 1 146 1 146 1.46e-35 125
Msa1138070 AT5G51870.4 43.195 169 93 2 1 167 1 168 1.75e-35 127
Msa1138070 AT5G51870.3 43.195 169 93 2 1 167 11 178 1.89e-35 127
Msa1138070 AT5G62165.10 45.223 157 84 2 1 156 1 156 2.38e-35 125
Msa1138070 AT5G62165.4 45.223 157 84 2 1 156 1 156 2.38e-35 125
Msa1138070 AT5G13790.2 49.045 157 76 3 1 157 1 153 3.84e-35 127
Msa1138070 AT5G13790.1 48.408 157 74 2 1 157 1 150 1.09e-34 126
Msa1138070 AT5G65050.3 41.011 178 98 2 1 178 1 171 2.13e-34 123
Msa1138070 AT5G51860.2 41.243 177 98 3 1 172 1 176 3.63e-34 123
Msa1138070 AT5G51860.1 41.040 173 99 2 1 171 1 172 3.73e-34 123
Msa1138070 AT5G65050.5 39.888 178 89 2 1 178 1 160 4.11e-34 122
Msa1138070 AT3G57390.3 44.000 175 89 2 1 167 1 174 4.81e-34 123
Msa1138070 AT5G65050.2 40.659 182 101 2 1 182 1 175 5.66e-34 122
Msa1138070 AT2G22540.3 39.881 168 99 2 1 167 1 167 8.08e-34 123
Msa1138070 AT2G22540.1 39.881 168 99 2 1 167 1 167 8.08e-34 123
Msa1138070 AT5G10140.4 41.860 172 89 3 1 168 1 165 8.08e-34 121
Msa1138070 AT3G57390.1 44.000 175 89 2 1 167 1 174 1.07e-33 123
Msa1138070 AT5G65060.1 39.888 178 100 3 1 178 1 171 2.20e-33 120
Msa1138070 AT1G71692.1 41.143 175 95 1 1 167 1 175 2.33e-33 121
Msa1138070 AT5G51870.2 45.205 146 77 2 1 144 1 145 3.10e-33 119
Msa1138070 AT5G23260.1 42.262 168 89 3 1 167 17 177 4.04e-33 122
Msa1138070 AT5G20240.1 40.828 169 91 3 1 168 1 161 5.15e-33 120
Msa1138070 AT5G65060.3 41.071 168 92 3 1 168 1 161 1.03e-32 119
Msa1138070 AT5G10140.2 44.898 147 74 2 1 147 1 140 1.22e-32 118
Msa1138070 AT5G51870.5 44.595 148 79 2 1 146 24 170 1.27e-32 119
Msa1138070 AT5G10140.1 44.898 147 74 2 1 147 1 140 1.37e-32 119
Msa1138070 AT5G65060.2 38.764 178 91 3 1 178 1 160 1.47e-32 118
Msa1138070 AT5G10140.3 44.898 147 74 2 1 147 1 140 1.81e-32 118
Msa1138070 AT5G65050.1 39.779 181 98 3 1 177 1 174 5.23e-32 117
Msa1138070 AT5G20240.2 45.390 141 72 2 1 140 1 137 6.94e-32 115
Msa1138070 AT5G23260.3 42.857 147 81 2 1 146 1 145 1.14e-31 117
Msa1138070 AT5G65070.1 42.353 170 87 3 1 168 1 161 1.46e-30 113
Msa1138070 AT5G62165.14 70.833 72 20 1 1 72 1 71 5.48e-30 109
Msa1138070 AT4G24540.1 41.520 171 92 3 1 167 1 167 9.14e-30 112
Msa1138070 AT5G65080.3 41.401 157 83 3 1 156 8 156 6.15e-29 108
Msa1138070 AT2G22540.2 36.905 168 99 2 1 167 1 162 1.36e-28 109
Msa1138070 AT3G54340.1 40.127 157 89 2 1 156 1 153 1.71e-27 106
Msa1138070 AT5G65070.2 37.436 195 92 4 1 168 1 192 3.49e-27 105
Msa1138070 AT1G31140.1 40.816 147 86 1 1 146 1 147 2.27e-26 103
Msa1138070 AT1G31140.2 42.308 156 73 3 1 146 1 149 2.56e-26 102
Msa1138070 AT5G65070.4 42.282 149 75 3 1 147 1 140 3.75e-25 97.8
Msa1138070 AT1G77080.11 38.690 168 96 2 1 168 1 161 3.76e-25 99.0
Msa1138070 AT5G65080.2 39.355 155 86 2 1 155 8 154 4.23e-25 99.4
Msa1138070 AT1G77080.4 37.430 179 105 2 1 179 1 172 4.36e-25 99.4
Msa1138070 AT1G77080.5 38.690 168 96 2 1 168 1 161 5.25e-25 98.2
Msa1138070 AT5G65070.3 36.634 202 85 5 1 168 1 193 5.75e-24 97.1
Msa1138070 AT5G65070.5 36.413 184 85 5 1 156 1 180 6.71e-24 96.3
Msa1138070 AT1G77080.8 33.498 203 107 3 1 179 1 199 2.04e-22 92.8
Msa1138070 AT1G77080.2 35.754 179 104 3 1 179 1 168 5.52e-21 88.2
Msa1138070 AT1G77980.1 54.054 74 34 0 1 74 1 74 1.56e-20 89.7
Msa1138070 AT1G22130.1 55.714 70 31 0 1 70 1 70 2.18e-20 89.4
Msa1138070 AT1G77080.12 36.538 156 88 3 1 156 1 145 2.21e-18 80.1
Msa1138070 AT1G69120.3 41.121 107 62 1 63 168 1 107 2.79e-18 80.9
Msa1138070 AT1G77950.3 52.857 70 33 0 1 70 1 70 5.76e-18 81.3
Msa1138070 AT1G77950.2 52.857 70 33 0 1 70 1 70 5.76e-18 81.3
Msa1138070 AT1G77950.1 52.857 70 33 0 1 70 1 70 5.76e-18 81.3
Msa1138070 AT1G77950.4 52.857 70 33 0 1 70 1 70 5.76e-18 81.3
Msa1138070 AT4G37435.1 59.649 57 23 0 1 57 1 57 1.60e-16 75.9
Msa1138070 AT1G01530.1 52.174 69 32 1 1 69 6 73 5.76e-16 75.9
Msa1138070 AT2G03060.3 37.143 105 57 2 1 104 1 97 2.03e-15 75.9
Msa1138070 AT2G03060.7 37.143 105 57 2 1 104 1 97 2.03e-15 75.9
Msa1138070 AT2G03060.1 37.143 105 57 2 1 104 1 97 2.03e-15 75.9
Msa1138070 AT2G03060.2 37.143 105 57 2 1 104 1 97 2.30e-15 75.5
Msa1138070 AT5G60910.2 39.623 106 63 1 63 167 1 106 5.36e-15 71.6
Msa1138070 AT1G65360.1 43.421 76 42 1 1 76 6 80 5.93e-15 72.4
Msa1138070 AT1G18750.4 52.632 57 27 0 1 57 1 57 2.23e-14 72.8
Msa1138070 AT1G18750.1 52.632 57 27 0 1 57 1 57 2.38e-14 72.8
Msa1138070 AT1G18750.3 52.632 57 27 0 1 57 1 57 3.02e-14 72.4
Msa1138070 AT4G36590.1 53.333 60 28 0 2 61 7 66 9.02e-14 69.7
Msa1138070 AT5G60440.1 46.377 69 36 1 2 70 7 74 1.25e-13 70.1
Msa1138070 AT1G69540.1 30.769 156 86 5 1 156 1 134 2.69e-13 69.3
Msa1138070 AT1G69540.2 30.769 156 86 5 1 156 1 134 3.20e-13 69.3
Msa1138070 AT1G72350.1 46.377 69 34 1 2 70 43 108 4.51e-13 67.4
Msa1138070 AT2G24840.1 45.714 70 37 1 1 70 62 130 8.22e-13 67.0
Msa1138070 AT3G66656.1 47.368 57 30 0 1 57 1 57 1.10e-12 65.5
Msa1138070 AT3G04100.1 43.836 73 40 1 2 74 14 85 1.12e-12 65.9
Msa1138070 AT2G34440.1 45.614 57 31 0 1 57 1 57 1.85e-12 64.7
Msa1138070 AT1G29962.1 50.000 60 30 0 2 61 8 67 1.28e-11 62.4
Msa1138070 AT1G47760.1 45.614 57 31 0 1 57 1 57 2.61e-11 61.6

Find 42 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTTTCAGTTCTGATTAT+AGG 0.166644 7_4:-7258383 Msa1138070:intron
TGATTGCCTGTAGTGATTTC+TGG 0.197665 7_4:+7259126 None:intergenic
AATAGCTACCTCAAGTTCTT+TGG 0.310821 7_4:+7261407 None:intergenic
ATTAGCTGATCTTCAAAATA+AGG 0.323444 7_4:-7259997 Msa1138070:intron
CAGCACCATAACTGCACTTC+TGG 0.351179 7_4:+7261448 None:intergenic
TCAAGATCTTTAGAACTTAG+TGG 0.370725 7_4:+7260864 None:intergenic
TGAGCAGCTTGAACGGCAAT+TGG 0.374852 7_4:-7260844 Msa1138070:CDS
GCAATCCTACATTGCAGATT+GGG 0.382564 7_4:-7259024 Msa1138070:intron
CAAGTGAATGGATTTGTTCC+TGG 0.418508 7_4:-7258309 Msa1138070:CDS
TCAGAGCTTCTTCCAGCAGC+TGG 0.423930 7_4:-7259050 Msa1138070:CDS
ACATTTGCAAAGAGAAGAAA+TGG 0.428741 7_4:-7263027 Msa1138070:CDS
GCATGCTCAAAACTCTTGAT+AGG 0.431018 7_4:-7261473 Msa1138070:CDS
TGCAATCCTACATTGCAGAT+TGG 0.436020 7_4:-7259025 Msa1138070:CDS
GAAATCACTACAGGCAATCA+TGG 0.441544 7_4:-7259123 Msa1138070:CDS
GAGGAAGAGTTGAGTTGAAG+AGG 0.453499 7_4:-7263077 Msa1138070:CDS
GTTTCAGCTTCAAGTATTCA+CGG 0.476057 7_4:+7261054 None:intergenic
AGGTACCAGAAGTGCAGTTA+TGG 0.477506 7_4:-7261453 Msa1138070:CDS
TTCTGTTCTTTGTGATGCTG+AGG 0.481866 7_4:-7262980 Msa1138070:CDS
GCTACCTCAAGTTCTTTGGC+AGG 0.490765 7_4:+7261411 None:intergenic
TAGGATTGCAATCCAGCTGC+TGG 0.491957 7_4:+7259038 None:intergenic
CAAGCTCAACAACAAGTGAA+TGG 0.495301 7_4:-7258321 Msa1138070:CDS
AAACAGATCCTTGTCAATCA+AGG 0.503683 7_4:-7259872 Msa1138070:intron
TATTACCCAATCTGCAATGT+AGG 0.505776 7_4:+7259019 None:intergenic
CTCAATTATAGCATCCATCC+AGG 0.520557 7_4:+7258291 None:intergenic
TACAGGCAATCATGGGAAGC+TGG 0.521740 7_4:-7259115 Msa1138070:CDS
CTTATCATCTTCTCTACTCG+TGG 0.542095 7_4:-7262952 Msa1138070:CDS
CGGAATGCAATTTAAAACAA+TGG 0.546473 7_4:-7259669 Msa1138070:intron
TGATCAAAGCATGCAATATG+AGG 0.548087 7_4:-7259092 Msa1138070:CDS
TCAATTCCAGAAATCACTAC+AGG 0.554040 7_4:-7259132 Msa1138070:CDS
AAGATCTTGAGCAGCTTGAA+CGG 0.572971 7_4:-7260851 Msa1138070:CDS
TTTGCAGACACAATTCATGC+TGG 0.573767 7_4:-7260024 Msa1138070:intron
TTTGTTACAGGAGCATATGT+TGG 0.585707 7_4:-7259902 Msa1138070:intron
TGAATGGATTTGTTCCTGGA+TGG 0.588184 7_4:-7258305 Msa1138070:CDS
AAATCACTACAGGCAATCAT+GGG 0.592196 7_4:-7259122 Msa1138070:CDS
GCCGCAGTTGTGGTTGTGAG+CGG 0.614257 7_4:-7259689 Msa1138070:CDS
CAAACCTGCCAAAGAACTTG+AGG 0.622488 7_4:-7261415 Msa1138070:intron
ATTCATCTCTGAAGCAAGTG+AGG 0.626186 7_4:-7260821 Msa1138070:CDS
TGTGTTTACCTTGATTGACA+AGG 0.630709 7_4:+7259864 None:intergenic
TTATGTTGCAGCCGCAGTTG+TGG 0.634810 7_4:-7259699 Msa1138070:CDS
GAAGCAAGTGAGGTCAACAA+AGG 0.665671 7_4:-7260811 Msa1138070:intron
TCCGCTCACAACCACAACTG+CGG 0.669067 7_4:+7259688 None:intergenic
AAAATCTTCAAAGAACACAG+AGG 0.732334 7_4:-7261022 Msa1138070:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTATTAATAAAAATA+AGG - chr7_4:7259422-7259441 Msa1138070:intron 0.0%
!! AATATATATTTATATACTTC+TGG - chr7_4:7259166-7259185 Msa1138070:intron 10.0%
!! CATAAAAAAAATTCAAATTT+AGG + chr7_4:7261038-7261057 None:intergenic 10.0%
!!! CTAAATTTGAATTTTTTTTA+TGG - chr7_4:7261036-7261055 Msa1138070:CDS 10.0%
!!! TTGATTAATGTTTTAAAAAA+CGG - chr7_4:7262608-7262627 Msa1138070:intron 10.0%
!!! TAAAATGAGTGTATTTTATA+CGG + chr7_4:7260065-7260084 None:intergenic 15.0%
!!! ATGTTCTATTATTTTTCATT+TGG - chr7_4:7260275-7260294 Msa1138070:intron 15.0%
!!! AATTAATAGTGTTGATATAT+TGG + chr7_4:7260433-7260452 None:intergenic 15.0%
!!! AACAATAGCTTAAATTTTTT+AGG + chr7_4:7261459-7261478 None:intergenic 15.0%
!!! TGATTTTCTCAAATTATTAA+CGG + chr7_4:7261879-7261898 None:intergenic 15.0%
!! TTTAGTATAATTATATGTGT+TGG - chr7_4:7261904-7261923 Msa1138070:intron 15.0%
!! TAAGTATTCAAAATTAGAAA+TGG - chr7_4:7262450-7262469 Msa1138070:intron 15.0%
!! TCAAAACATATATATAAAGA+TGG + chr7_4:7262967-7262986 None:intergenic 15.0%
!!! ACTGTCTTTGTTTTATTTTT+AGG - chr7_4:7258867-7258886 Msa1138070:intron 20.0%
!! TAAGATTTAAGAAAAAAGCA+AGG + chr7_4:7258970-7258989 None:intergenic 20.0%
!!! ATTAATTTCCATGTTTTCTT+TGG - chr7_4:7259015-7259034 Msa1138070:intron 20.0%
!!! AATTAAGTTGTTTATCTTTC+TGG - chr7_4:7259072-7259091 Msa1138070:CDS 20.0%
!! TTAATAAATGCATTACTCTA+TGG + chr7_4:7259142-7259161 None:intergenic 20.0%
!!! AAAATTGTCTTTTGTTTATG+AGG - chr7_4:7259191-7259210 Msa1138070:intron 20.0%
!! TTCAAGATTTATTCATTTGA+TGG - chr7_4:7259561-7259580 Msa1138070:intron 20.0%
!! AGATATGTATTCAAATATCA+GGG + chr7_4:7260017-7260036 None:intergenic 20.0%
!!! CTAAAAGATTTCTGAAATAT+TGG + chr7_4:7260482-7260501 None:intergenic 20.0%
!!! CAATATTTCAGAAATCTTTT+AGG - chr7_4:7260480-7260499 Msa1138070:intron 20.0%
!!! TCATTTTCTCAAATTATTAC+TGG + chr7_4:7260750-7260769 None:intergenic 20.0%
!!! GTATAACTTCAATTTTTCTT+AGG - chr7_4:7260997-7261016 Msa1138070:intron 20.0%
!! AATTAATAAAGCAACTTCTT+TGG - chr7_4:7261430-7261449 Msa1138070:CDS 20.0%
!! ATTAATAAAGCAACTTCTTT+GGG - chr7_4:7261431-7261450 Msa1138070:CDS 20.0%
!! TGTACAAGAAATATCTATTA+TGG - chr7_4:7261796-7261815 Msa1138070:intron 20.0%
!!! AAAGAAAAGAAACTTTTAGA+TGG - chr7_4:7262138-7262157 Msa1138070:intron 20.0%
!! TAGTCAAATATATTATCAGA+AGG + chr7_4:7262205-7262224 None:intergenic 20.0%
!! AGAAATGGTTTATGAAATTT+AGG - chr7_4:7262465-7262484 Msa1138070:intron 20.0%
!! TTATCTATTTATTTGTCATC+TGG + chr7_4:7262705-7262724 None:intergenic 20.0%
!!! GAAAGCAATGTTTTAAAAAT+TGG + chr7_4:7262922-7262941 None:intergenic 20.0%
! AAAAAACCACAAAACTTTCA+TGG + chr7_4:7258712-7258731 None:intergenic 25.0%
! AAATGTTTATGTCCTTTGTA+CGG - chr7_4:7258818-7258837 Msa1138070:intron 25.0%
!!! GTCTTTGTTTTATTTTTAGG+AGG - chr7_4:7258870-7258889 Msa1138070:intron 25.0%
! AAGCAATGTTTCAATGAAAA+AGG + chr7_4:7258917-7258936 None:intergenic 25.0%
! AAAATAAGGAATTTCGAAAC+TGG - chr7_4:7259436-7259455 Msa1138070:intron 25.0%
! TTTATTCATTTGATGGAATC+TGG - chr7_4:7259568-7259587 Msa1138070:intron 25.0%
! TTATTCATTTGATGGAATCT+GGG - chr7_4:7259569-7259588 Msa1138070:intron 25.0%
! GTGCATCATAAAAAATGTAA+AGG + chr7_4:7259659-7259678 None:intergenic 25.0%
! GCACAAGAATGTTATTAAAA+TGG - chr7_4:7259675-7259694 Msa1138070:CDS 25.0%
! GTTATTAAAATGGCACAATA+TGG - chr7_4:7259685-7259704 Msa1138070:CDS 25.0%
! CCGTTAACTTAAATTGTTAA+CGG + chr7_4:7259742-7259761 None:intergenic 25.0%
!! CCGTTAACAATTTAAGTTAA+CGG - chr7_4:7259739-7259758 Msa1138070:intron 25.0%
!!! ATTTGACATAGATTTTTTCC+TGG - chr7_4:7259872-7259891 Msa1138070:intron 25.0%
!! ATATCAGGGTTGATTATAAA+TGG + chr7_4:7260003-7260022 None:intergenic 25.0%
! CAGATATGTATTCAAATATC+AGG + chr7_4:7260018-7260037 None:intergenic 25.0%
!! TCAATTTTTCTTAGGTCATT+TGG - chr7_4:7261005-7261024 Msa1138070:intron 25.0%
! ATGGTTCATATACGATATAT+CGG - chr7_4:7261055-7261074 Msa1138070:CDS 25.0%
!! CTTACGATTGATAATAAGAT+TGG - chr7_4:7261141-7261160 Msa1138070:intron 25.0%
! AATGTTATTGTGACTCTTAT+TGG - chr7_4:7261307-7261326 Msa1138070:intron 25.0%
!!! TATTTTGAAGATCAGCTAAT+TGG + chr7_4:7261383-7261402 None:intergenic 25.0%
! ATTAGCTGATCTTCAAAATA+AGG - chr7_4:7261383-7261402 Msa1138070:intron 25.0%
!!! TTAAGCTATTGTTTTGTTAC+AGG - chr7_4:7261466-7261485 Msa1138070:CDS 25.0%
!!! CTCATATTTGTTTTGAATTG+TGG - chr7_4:7261564-7261583 Msa1138070:intron 25.0%
!! TGCATTTTCTTGCAATATAA+AGG + chr7_4:7261608-7261627 None:intergenic 25.0%
!!! GCTGCAACATAATTTTTTTT+AGG + chr7_4:7261673-7261692 None:intergenic 25.0%
!!! TGACTATAATTTGTTTCAGT+TGG - chr7_4:7262219-7262238 Msa1138070:intron 25.0%
! CTCATAAATTATTACTCAAG+AGG + chr7_4:7262402-7262421 None:intergenic 25.0%
!!! AAGTTACTTTTTGTTGTTTC+AGG - chr7_4:7262494-7262513 Msa1138070:intron 25.0%
!!! AGTTACTTTTTGTTGTTTCA+GGG - chr7_4:7262495-7262514 Msa1138070:intron 25.0%
! ACTTCTTAACAAATGTCTTA+AGG - chr7_4:7262558-7262577 Msa1138070:intron 25.0%
! ATAATCAGAACTGAAAGATA+GGG + chr7_4:7262997-7263016 None:intergenic 25.0%
! TATAATCAGAACTGAAAGAT+AGG + chr7_4:7262998-7263017 None:intergenic 25.0%
!! TATCTTTCAGTTCTGATTAT+AGG - chr7_4:7262997-7263016 Msa1138070:CDS 25.0%
ACATTTGCAAAGAGAAGAAA+TGG - chr7_4:7258353-7258372 Msa1138070:CDS 30.0%
CAAGTACATGTAGATCTAAT+AGG + chr7_4:7258575-7258594 None:intergenic 30.0%
! TTTTGTCCATGAAAGTTTTG+TGG - chr7_4:7258703-7258722 Msa1138070:intron 30.0%
!!! TTAGGAGGTTTTTTGAGATT+AGG - chr7_4:7258885-7258904 Msa1138070:intron 30.0%
GGGCTATTAGATAATAGATA+GGG - chr7_4:7259234-7259253 Msa1138070:intron 30.0%
TCAGTGAATTCAAGAATTCA+AGG + chr7_4:7259346-7259365 None:intergenic 30.0%
TTGAAATCTGTTGATATTGC+TGG - chr7_4:7259367-7259386 Msa1138070:intron 30.0%
TGCACTTTCTACAATTGTAA+TGG - chr7_4:7259628-7259647 Msa1138070:intron 30.0%
TTGAATTTAACCACATGTGT+CGG - chr7_4:7259768-7259787 Msa1138070:intron 30.0%
! AGTGTATTTTATACGGTGTT+GGG + chr7_4:7260058-7260077 None:intergenic 30.0%
AAAATCTTCAAAGAACACAG+AGG - chr7_4:7260358-7260377 Msa1138070:intron 30.0%
!! AAATCTTTTAGGTGAAGACT+TGG - chr7_4:7260491-7260510 Msa1138070:intron 30.0%
!! AATCTTTTAGGTGAAGACTT+GGG - chr7_4:7260492-7260511 Msa1138070:intron 30.0%
!! TCAAGATCTTTAGAACTTAG+TGG + chr7_4:7260519-7260538 None:intergenic 30.0%
TTCTTAATTAGTCGTAACAC+TGG - chr7_4:7260619-7260638 Msa1138070:intron 30.0%
TTTCTAATCAAAGACGTGTT+TGG + chr7_4:7260845-7260864 None:intergenic 30.0%
TACAAAGATGACAGAAAAAG+TGG + chr7_4:7260980-7260999 None:intergenic 30.0%
TTCATGATTTGAATCTCGTT+TGG - chr7_4:7261192-7261211 Msa1138070:intron 30.0%
AAGAAACTAAATTGAGCTAC+TGG + chr7_4:7261228-7261247 None:intergenic 30.0%
AGAGTCACAATAACATTCAA+GGG + chr7_4:7261304-7261323 None:intergenic 30.0%
AAGAGTCACAATAACATTCA+AGG + chr7_4:7261305-7261324 None:intergenic 30.0%
ATTGGTTACATTGAACTGTT+TGG - chr7_4:7261325-7261344 Msa1138070:intron 30.0%
GAGATGAATATCATGTATAC+TGG + chr7_4:7261547-7261566 None:intergenic 30.0%
! CGGAATGCAATTTAAAACAA+TGG - chr7_4:7261711-7261730 Msa1138070:intron 30.0%
TCTCAAATTATTAACGGTGT+AGG + chr7_4:7261873-7261892 None:intergenic 30.0%
CTAAGACCAATTCTAAATTG+TGG + chr7_4:7262018-7262037 None:intergenic 30.0%
!! CTATAATTTGTTTCAGTTGG+AGG - chr7_4:7262222-7262241 Msa1138070:intron 30.0%
TGAATACTTAAAAGCCCTTA+GGG + chr7_4:7262440-7262459 None:intergenic 30.0%
TTGAATACTTAAAAGCCCTT+AGG + chr7_4:7262441-7262460 None:intergenic 30.0%
CAGTTGATTACAGGTTAAAA+CGG + chr7_4:7262800-7262819 None:intergenic 30.0%
! TTTTAACCTGTAATCAACTG+TGG - chr7_4:7262800-7262819 Msa1138070:intron 30.0%
CAACCTGACTACATTATAAT+TGG - chr7_4:7262835-7262854 Msa1138070:intron 30.0%
GATCCAATTATAATGTAGTC+AGG + chr7_4:7262841-7262860 None:intergenic 30.0%
!! GAACAAGTTGGTTTACTATT+TGG + chr7_4:7262867-7262886 None:intergenic 30.0%
!!! TCCTTTGTACGGTTACTTTT+TGG - chr7_4:7258829-7258848 Msa1138070:intron 35.0%
ACCAAAAAGTAACCGTACAA+AGG + chr7_4:7258833-7258852 None:intergenic 35.0%
!! TTTTCTTTGGAAGCTTGGTT+AGG - chr7_4:7259028-7259047 Msa1138070:CDS 35.0%
! ATGAGGAACTTTTTGCAGAA+AGG - chr7_4:7259208-7259227 Msa1138070:intron 35.0%
! GAACTTTTTGCAGAAAGGAA+GGG - chr7_4:7259213-7259232 Msa1138070:intron 35.0%
! AACTTTTTGCAGAAAGGAAG+GGG - chr7_4:7259214-7259233 Msa1138070:intron 35.0%
GGGGCTATTAGATAATAGAT+AGG - chr7_4:7259233-7259252 Msa1138070:intron 35.0%
TAAGGAATTTCGAAACTGGT+AGG - chr7_4:7259440-7259459 Msa1138070:intron 35.0%
! ATATACATTGAAGGTGTGTC+AGG + chr7_4:7259814-7259833 None:intergenic 35.0%
! ATTTTCTTTGTAGCAAGCAC+CGG + chr7_4:7259840-7259859 None:intergenic 35.0%
AATAGCTACCTCAAGTTCTT+TGG + chr7_4:7259976-7259995 None:intergenic 35.0%
! GAGTGTATTTTATACGGTGT+TGG + chr7_4:7260059-7260078 None:intergenic 35.0%
!! TACACTCATTTTAGTGCGTT+CGG - chr7_4:7260072-7260091 Msa1138070:intron 35.0%
GTTTCAGCTTCAAGTATTCA+CGG + chr7_4:7260329-7260348 None:intergenic 35.0%
!! ATCTTTTAGGTGAAGACTTG+GGG - chr7_4:7260493-7260512 Msa1138070:intron 35.0%
! TGTTTGGTTTCAACATGTGT+CGG + chr7_4:7260829-7260848 None:intergenic 35.0%
! ACGATTCAGAAAAGTGTACT+CGG - chr7_4:7261168-7261187 Msa1138070:intron 35.0%
TCACAATAACATTCAAGGGA+AGG + chr7_4:7261300-7261319 None:intergenic 35.0%
! TTTGTTACAGGAGCATATGT+TGG - chr7_4:7261478-7261497 Msa1138070:intron 35.0%
AAACAGATCCTTGTCAATCA+AGG - chr7_4:7261508-7261527 Msa1138070:intron 35.0%
TGTGTTTACCTTGATTGACA+AGG + chr7_4:7261519-7261538 None:intergenic 35.0%
! CCTAATCTTCTTCTAGCTAT+GGG + chr7_4:7261742-7261761 None:intergenic 35.0%
! ACCTAATCTTCTTCTAGCTA+TGG + chr7_4:7261743-7261762 None:intergenic 35.0%
! TACGGACCACAATTTAGAAT+TGG - chr7_4:7262009-7262028 Msa1138070:intron 35.0%
TCAATTCCAGAAATCACTAC+AGG - chr7_4:7262248-7262267 Msa1138070:intron 35.0%
AAATCACTACAGGCAATCAT+GGG - chr7_4:7262258-7262277 Msa1138070:intron 35.0%
TGATCAAAGCATGCAATATG+AGG - chr7_4:7262288-7262307 Msa1138070:intron 35.0%
TATTACCCAATCTGCAATGT+AGG + chr7_4:7262364-7262383 None:intergenic 35.0%
CAATTGAACCAATTACCTAG+AGG + chr7_4:7262656-7262675 None:intergenic 35.0%
! CTCTAGGTAATTGGTTCAAT+TGG - chr7_4:7262654-7262673 Msa1138070:intron 35.0%
! TTTGTCATCTGGTTCAACTT+TGG + chr7_4:7262694-7262713 None:intergenic 35.0%
TACAGGTTAAAACGGTTCAA+CGG + chr7_4:7262792-7262811 None:intergenic 35.0%
ATTGAACCACAGTTGATTAC+AGG + chr7_4:7262809-7262828 None:intergenic 35.0%
CCGATTTAATTGGTTGAACT+GGG + chr7_4:7262889-7262908 None:intergenic 35.0%
CCCAGTTCAACCAATTAAAT+CGG - chr7_4:7262886-7262905 Msa1138070:intron 35.0%
! ACCGATTTAATTGGTTGAAC+TGG + chr7_4:7262890-7262909 None:intergenic 35.0%
! ATCGAACTGACCGATTTAAT+TGG + chr7_4:7262899-7262918 None:intergenic 35.0%
TTCTGTTCTTTGTGATGCTG+AGG - chr7_4:7258400-7258419 Msa1138070:intron 40.0%
CTTATCATCTTCTCTACTCG+TGG - chr7_4:7258428-7258447 Msa1138070:intron 40.0%
CCAAGCTTCCAAAGAAAACA+TGG + chr7_4:7259026-7259045 None:intergenic 40.0%
!! CCATGTTTTCTTTGGAAGCT+TGG - chr7_4:7259023-7259042 Msa1138070:intron 40.0%
TGCATTACTCTATGGTTCAG+AGG + chr7_4:7259134-7259153 None:intergenic 40.0%
! GGAACTTTTTGCAGAAAGGA+AGG - chr7_4:7259212-7259231 Msa1138070:intron 40.0%
GATATTGCTGGAAATTGTGC+TGG - chr7_4:7259379-7259398 Msa1138070:intron 40.0%
CACCTTCAATGTATATCGTC+CGG - chr7_4:7259818-7259837 Msa1138070:intron 40.0%
GCATGCTCAAAACTCTTGAT+AGG - chr7_4:7259907-7259926 Msa1138070:intron 40.0%
ATCAGAAACCGTATAGAACG+TGG - chr7_4:7260128-7260147 Msa1138070:intron 40.0%
TGACATCAGACAACGTATTC+CGG + chr7_4:7260154-7260173 None:intergenic 40.0%
AAGATCTTGAGCAGCTTGAA+CGG - chr7_4:7260529-7260548 Msa1138070:intron 40.0%
!! ATTCATCTCTGAAGCAAGTG+AGG - chr7_4:7260559-7260578 Msa1138070:intron 40.0%
! CACATGTGTTGGTATCATGT+TGG - chr7_4:7260794-7260813 Msa1138070:intron 40.0%
TGTTGGTATCATGTTGGTGT+TGG - chr7_4:7260800-7260819 Msa1138070:intron 40.0%
ATGAATCTCTAGCGTGTATC+TGG - chr7_4:7260876-7260895 Msa1138070:CDS 40.0%
AGGGAAGGAGCTATTACATA+AGG + chr7_4:7261285-7261304 None:intergenic 40.0%
TTTGCAGACACAATTCATGC+TGG - chr7_4:7261356-7261375 Msa1138070:intron 40.0%
TTGTGGCTGTTGTTATGCTA+CGG - chr7_4:7261581-7261600 Msa1138070:intron 40.0%
CCCATAGCTAGAAGAAGATT+AGG - chr7_4:7261739-7261758 Msa1138070:intron 40.0%
GTATGATGGTTCATGAAGCA+CGG + chr7_4:7261971-7261990 None:intergenic 40.0%
CAATTACGGTTGCTGTATGA+TGG + chr7_4:7261985-7262004 None:intergenic 40.0%
AGCAACCGTAATTGCAGTTA+CGG - chr7_4:7261991-7262010 Msa1138070:intron 40.0%
TGATTGCCTGTAGTGATTTC+TGG + chr7_4:7262257-7262276 None:intergenic 40.0%
GAAATCACTACAGGCAATCA+TGG - chr7_4:7262257-7262276 Msa1138070:intron 40.0%
TGCAATCCTACATTGCAGAT+TGG - chr7_4:7262355-7262374 Msa1138070:intron 40.0%
GCAATCCTACATTGCAGATT+GGG - chr7_4:7262356-7262375 Msa1138070:intron 40.0%
TCATGTTAACAAGTGCCCTA+AGG - chr7_4:7262422-7262441 Msa1138070:intron 40.0%
CATGTTAACAAGTGCCCTAA+GGG - chr7_4:7262423-7262442 Msa1138070:intron 40.0%
GGTCTCACTCATTTGATCTT+TGG + chr7_4:7262635-7262654 None:intergenic 40.0%
ATCAAATGAGTGAGACCTCT+AGG - chr7_4:7262638-7262657 Msa1138070:intron 40.0%
CAAGCTCAACAACAAGTGAA+TGG - chr7_4:7263059-7263078 Msa1138070:CDS 40.0%
! CAAGTGAATGGATTTGTTCC+TGG - chr7_4:7263071-7263090 Msa1138070:CDS 40.0%
! TGAATGGATTTGTTCCTGGA+TGG - chr7_4:7263075-7263094 Msa1138070:CDS 40.0%
!! GAGGAAGAGTTGAGTTGAAG+AGG - chr7_4:7258303-7258322 Msa1138070:CDS 45.0%
CTTGGTTAGGTGACTCTTGA+TGG - chr7_4:7259041-7259060 Msa1138070:CDS 45.0%
CACCGGACGATATACATTGA+AGG + chr7_4:7259823-7259842 None:intergenic 45.0%
! AGGTACCAGAAGTGCAGTTA+TGG - chr7_4:7259927-7259946 Msa1138070:intron 45.0%
CAAACCTGCCAAAGAACTTG+AGG - chr7_4:7259965-7259984 Msa1138070:intron 45.0%
TATTCCGGCCACGTTCTATA+CGG + chr7_4:7260139-7260158 None:intergenic 45.0%
GAAGCAAGTGAGGTCAACAA+AGG - chr7_4:7260569-7260588 Msa1138070:intron 45.0%
ACTCACGTACTCACATGTGT+TGG - chr7_4:7260783-7260802 Msa1138070:intron 45.0%
AGTCGATGCAGATGAAATCG+CGG - chr7_4:7261627-7261646 Msa1138070:intron 45.0%
!! ATATGTGTTGGTGTCGTGTC+CGG - chr7_4:7261916-7261935 Msa1138070:intron 45.0%
GTGGTCCGTAACTGCAATTA+CGG + chr7_4:7261999-7262018 None:intergenic 45.0%
GAGTGAGACCTCTAGGTAAT+TGG - chr7_4:7262645-7262664 Msa1138070:intron 45.0%
TGGTTGAACTGGGAACAAGT+TGG + chr7_4:7262879-7262898 None:intergenic 45.0%
!! ATATATAATTTATTAAACTA+AGG + chr7_4:7262041-7262060 None:intergenic 5.0%
TGACATGACACCGACACATG+TGG + chr7_4:7259781-7259800 None:intergenic 50.0%
!! GCATGCTGTTTCGACAAACC+AGG + chr7_4:7259893-7259912 None:intergenic 50.0%
CAGCACCATAACTGCACTTC+TGG + chr7_4:7259935-7259954 None:intergenic 50.0%
GCTACCTCAAGTTCTTTGGC+AGG + chr7_4:7259972-7259991 None:intergenic 50.0%
GAAACCGTATAGAACGTGGC+CGG - chr7_4:7260132-7260151 Msa1138070:intron 50.0%
TGAGCAGCTTGAACGGCAAT+TGG - chr7_4:7260536-7260555 Msa1138070:intron 50.0%
TTATGTTGCAGCCGCAGTTG+TGG - chr7_4:7261681-7261700 Msa1138070:intron 50.0%
TACAGGCAATCATGGGAAGC+TGG - chr7_4:7262265-7262284 Msa1138070:intron 50.0%
TAGGATTGCAATCCAGCTGC+TGG + chr7_4:7262345-7262364 None:intergenic 50.0%
TCCGCTCACAACCACAACTG+CGG + chr7_4:7261695-7261714 None:intergenic 55.0%
TACTCGGACAAGGTGTGTCC+CGG + chr7_4:7261944-7261963 None:intergenic 55.0%
CATGAAGCACGGACGCTACT+CGG + chr7_4:7261960-7261979 None:intergenic 55.0%
TCAGAGCTTCTTCCAGCAGC+TGG - chr7_4:7262330-7262349 Msa1138070:intron 55.0%
GCCGCAGTTGTGGTTGTGAG+CGG - chr7_4:7261691-7261710 Msa1138070:intron 60.0%
!! GTTGGTGTCGTGTCCGGCAC+CGG - chr7_4:7261922-7261941 Msa1138070:intron 65.0%
!! TTGGTGTCGTGTCCGGCACC+GGG - chr7_4:7261923-7261942 Msa1138070:intron 65.0%
GACAAGGTGTGTCCCGGTGC+CGG + chr7_4:7261938-7261957 None:intergenic 65.0%
GCACGGACGCTACTCGGACA+AGG + chr7_4:7261954-7261973 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 7258296 7263106 7258296 ID=Msa1138070;Name=Msa1138070
chr7_4 mRNA 7258296 7263106 7258296 ID=Msa1138070-mRNA-1;Parent=Msa1138070;Name=Msa1138070-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|0.88|1|1|9|0|271
chr7_4 exon 7262922 7263106 7262922 ID=Msa1138070-mRNA-1:exon:2023;Parent=Msa1138070-mRNA-1
chr7_4 exon 7261416 7261494 7261416 ID=Msa1138070-mRNA-1:exon:2022;Parent=Msa1138070-mRNA-1
chr7_4 exon 7261023 7261084 7261023 ID=Msa1138070-mRNA-1:exon:2021;Parent=Msa1138070-mRNA-1
chr7_4 exon 7260812 7260911 7260812 ID=Msa1138070-mRNA-1:exon:2020;Parent=Msa1138070-mRNA-1
chr7_4 exon 7259998 7260039 7259998 ID=Msa1138070-mRNA-1:exon:2019;Parent=Msa1138070-mRNA-1
chr7_4 exon 7259873 7259914 7259873 ID=Msa1138070-mRNA-1:exon:2018;Parent=Msa1138070-mRNA-1
chr7_4 exon 7259670 7259735 7259670 ID=Msa1138070-mRNA-1:exon:2017;Parent=Msa1138070-mRNA-1
chr7_4 exon 7259025 7259164 7259025 ID=Msa1138070-mRNA-1:exon:2016;Parent=Msa1138070-mRNA-1
chr7_4 exon 7258296 7258395 7258296 ID=Msa1138070-mRNA-1:exon:2015;Parent=Msa1138070-mRNA-1
chr7_4 CDS 7262922 7263106 7262922 ID=Msa1138070-mRNA-1:cds;Parent=Msa1138070-mRNA-1
chr7_4 CDS 7261416 7261494 7261416 ID=Msa1138070-mRNA-1:cds;Parent=Msa1138070-mRNA-1
chr7_4 CDS 7261023 7261084 7261023 ID=Msa1138070-mRNA-1:cds;Parent=Msa1138070-mRNA-1
chr7_4 CDS 7260812 7260911 7260812 ID=Msa1138070-mRNA-1:cds;Parent=Msa1138070-mRNA-1
chr7_4 CDS 7259998 7260039 7259998 ID=Msa1138070-mRNA-1:cds;Parent=Msa1138070-mRNA-1
chr7_4 CDS 7259873 7259914 7259873 ID=Msa1138070-mRNA-1:cds;Parent=Msa1138070-mRNA-1
chr7_4 CDS 7259670 7259735 7259670 ID=Msa1138070-mRNA-1:cds;Parent=Msa1138070-mRNA-1
chr7_4 CDS 7259025 7259164 7259025 ID=Msa1138070-mRNA-1:cds;Parent=Msa1138070-mRNA-1
chr7_4 CDS 7258296 7258395 7258296 ID=Msa1138070-mRNA-1:cds;Parent=Msa1138070-mRNA-1
Gene Sequence

>Msa1138070

ATGGGAAGAGGAAGAGTTGAGTTGAAGAGGATAGAGAACAAGATAAACAGACAAGTTACATTTGCAAAGAGAAGAAATGGTCTTCTTAAGAAAGCATATGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTACTCGTGGAAAGCTTTATGAATTTTGTAGCACATCTAACATGCTCAAAACTCTTGATAGGTACCAGAAGTGCAGTTATGGTGCTGTAGAAGTTAGCAAACCTGCCAAAGAACTTGAGAGCAGCTACCGTGAATACTTGAAGCTGAAACAAAGATTTGAAAATCTTCAAAGAACACAGAGAAATCTTTTAGGTGAAGACTTGGGGCCACTAAGTTCTAAAGATCTTGAGCAGCTTGAACGGCAATTGGATTCATCTCTGAAGCAAGTGAGGTCAACAAAGACACAATTCATGCTGGACCAATTAGCTGATCTTCAAAATAAGGAGCATATGTTGGTTGAAGCAAACAGATCCTTGTCAATCAAGAGACCTAAAAAAAATTATGTTGCAGCCGCAGTTGTGGTTGTGAGCGGAATGCAATTTAAAACAATGTTGGAGGAAATCAATTCCAGAAATCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGCATGCAATATGAGGCTCAGCAGAATGCTCACTCTCAGAGCTTCTTCCAGCAGCTGGATTGCAATCCTACATTGCAGATTGGTTCTGATTATAGGTACAACAATGTAGCTTCAGATCAGATAGCTTCAACAAGTCAAGCTCAACAACAAGTGAATGGATTTGTTCCTGGATGGATGCTATAA
Protein sequence

>Msa1138070

MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTSNMLKTLDRYQKCSYGAVEVSKPAKELESSYREYLKLKQRFENLQRTQRNLLGEDLGPLSSKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLSIKRPKKNYVAAAVVVVSGMQFKTMLEEINSRNHYRQSWEAGDQSMQYEAQQNAHSQSFFQQLDCNPTLQIGSDYRYNNVASDQIASTSQAQQQVNGFVPGWML*