Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138160 | AES95190.2 | 63.256 | 215 | 36 | 6 | 1 | 172 | 23 | 237 | 3.90e-65 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138160 | sp|Q84JK2|FD_ARATH | 56.250 | 80 | 30 | 1 | 93 | 172 | 200 | 274 | 4.38e-18 | 82.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138160 | G7JXL9 | 63.256 | 215 | 36 | 6 | 1 | 172 | 23 | 237 | 1.86e-65 | 210 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1138160 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138160 | MtrunA17_Chr5g0405951 | 63.256 | 215 | 36 | 6 | 1 | 172 | 23 | 237 | 3.59e-69 | 210 |
| Msa1138160 | MtrunA17_Chr7g0254991 | 34.359 | 195 | 86 | 8 | 4 | 167 | 116 | 299 | 7.34e-14 | 67.8 |
| Msa1138160 | MtrunA17_Chr3g0133971 | 62.500 | 56 | 16 | 1 | 108 | 163 | 352 | 402 | 1.17e-13 | 67.8 |
| Msa1138160 | MtrunA17_Chr4g0044771 | 37.681 | 138 | 56 | 5 | 28 | 165 | 246 | 353 | 2.89e-13 | 66.6 |
| Msa1138160 | MtrunA17_Chr3g0080341 | 65.385 | 52 | 13 | 1 | 108 | 159 | 251 | 297 | 1.88e-12 | 63.9 |
| Msa1138160 | MtrunA17_Chr8g0355121 | 58.462 | 65 | 21 | 2 | 96 | 159 | 229 | 288 | 1.31e-11 | 61.6 |
| Msa1138160 | MtrunA17_Chr2g0321411 | 34.783 | 161 | 85 | 5 | 7 | 165 | 117 | 259 | 1.39e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138160 | AT4G35900.1 | 56.250 | 80 | 30 | 1 | 93 | 172 | 200 | 274 | 4.45e-19 | 82.4 |
| Msa1138160 | AT2G17770.2 | 41.538 | 130 | 61 | 4 | 50 | 172 | 63 | 184 | 3.35e-18 | 78.2 |
| Msa1138160 | AT3G56850.1 | 51.807 | 83 | 34 | 2 | 78 | 159 | 195 | 272 | 1.35e-13 | 67.4 |
| Msa1138160 | AT1G45249.1 | 60.345 | 58 | 18 | 1 | 108 | 165 | 337 | 389 | 4.34e-13 | 66.6 |
| Msa1138160 | AT2G41070.4 | 65.000 | 60 | 12 | 2 | 108 | 167 | 200 | 250 | 4.37e-13 | 65.9 |
| Msa1138160 | AT2G41070.3 | 65.000 | 60 | 12 | 2 | 108 | 167 | 191 | 241 | 4.50e-13 | 65.5 |
| Msa1138160 | AT2G41070.1 | 65.000 | 60 | 12 | 2 | 108 | 167 | 191 | 241 | 4.50e-13 | 65.5 |
| Msa1138160 | AT2G41070.2 | 65.000 | 60 | 12 | 2 | 108 | 167 | 191 | 241 | 4.50e-13 | 65.5 |
| Msa1138160 | AT1G45249.7 | 60.345 | 58 | 18 | 1 | 108 | 165 | 352 | 404 | 5.30e-13 | 66.2 |
| Msa1138160 | AT1G45249.6 | 60.345 | 58 | 18 | 1 | 108 | 165 | 352 | 404 | 5.30e-13 | 66.2 |
| Msa1138160 | AT2G41070.5 | 73.469 | 49 | 8 | 1 | 108 | 156 | 191 | 234 | 1.71e-12 | 63.9 |
| Msa1138160 | AT1G45249.3 | 54.688 | 64 | 23 | 1 | 108 | 165 | 337 | 400 | 2.11e-12 | 64.7 |
| Msa1138160 | AT4G34000.1 | 58.621 | 58 | 19 | 1 | 108 | 165 | 373 | 425 | 2.79e-12 | 64.3 |
| Msa1138160 | AT4G34000.4 | 58.621 | 58 | 19 | 1 | 108 | 165 | 373 | 425 | 2.79e-12 | 64.3 |
| Msa1138160 | AT4G34000.2 | 58.621 | 58 | 19 | 1 | 108 | 165 | 373 | 425 | 2.79e-12 | 64.3 |
| Msa1138160 | AT2G36270.3 | 62.963 | 54 | 15 | 1 | 108 | 161 | 356 | 404 | 6.03e-12 | 63.2 |
| Msa1138160 | AT2G36270.1 | 62.963 | 54 | 15 | 1 | 108 | 161 | 356 | 404 | 7.50e-12 | 63.2 |
| Msa1138160 | AT2G36270.2 | 62.963 | 54 | 15 | 1 | 108 | 161 | 356 | 404 | 7.50e-12 | 63.2 |
| Msa1138160 | AT3G19290.4 | 55.172 | 58 | 21 | 1 | 108 | 165 | 352 | 404 | 8.47e-12 | 62.8 |
| Msa1138160 | AT3G19290.1 | 55.172 | 58 | 21 | 1 | 108 | 165 | 352 | 404 | 1.05e-11 | 62.4 |
| Msa1138160 | AT3G19290.5 | 55.172 | 58 | 21 | 1 | 108 | 165 | 352 | 404 | 1.05e-11 | 62.4 |
| Msa1138160 | AT3G19290.3 | 55.172 | 58 | 21 | 1 | 108 | 165 | 352 | 404 | 1.10e-11 | 62.4 |
| Msa1138160 | AT1G49720.2 | 59.259 | 54 | 17 | 1 | 108 | 161 | 312 | 360 | 2.66e-11 | 61.2 |
| Msa1138160 | AT4G34000.3 | 62.745 | 51 | 14 | 1 | 108 | 158 | 373 | 418 | 2.99e-11 | 61.2 |
| Msa1138160 | AT1G49720.1 | 59.259 | 54 | 17 | 1 | 108 | 161 | 312 | 360 | 3.08e-11 | 61.2 |
| Msa1138160 | AT1G49720.3 | 59.259 | 54 | 17 | 1 | 108 | 161 | 312 | 360 | 3.08e-11 | 61.2 |
Find 27 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGAATAATCGATGCTTT+TGG | 0.258209 | 7_4:+7486856 | None:intergenic |
| TCTAATTCTTTCATTTCTTT+TGG | 0.267657 | 7_4:-7486647 | Msa1138160:CDS |
| AGTACTCGTAATTGTACTTT+TGG | 0.310858 | 7_4:-7486929 | Msa1138160:CDS |
| CCCTTGGTGCAGAAATGTTT+TGG | 0.332466 | 7_4:+7486723 | None:intergenic |
| CATTGAACTAGGGCAATAAA+AGG | 0.373167 | 7_4:+7486784 | None:intergenic |
| ATAAGAGGATGATCAAGAAT+CGG | 0.446318 | 7_4:-7486577 | Msa1138160:CDS |
| AGAGCAGCAAGTTCAACTAT+TGG | 0.448847 | 7_4:-7485815 | Msa1138160:CDS |
| CTTGAGTGTGAAAGTCTTGA+AGG | 0.469462 | 7_4:+7486897 | None:intergenic |
| TTTGGGTGGGTCTGAAGTAA+GGG | 0.472493 | 7_4:+7486874 | None:intergenic |
| GATGGTGGGGTCATTGAACT+AGG | 0.476787 | 7_4:+7486773 | None:intergenic |
| CCAAAACATTTCTGCACCAA+GGG | 0.485290 | 7_4:-7486723 | Msa1138160:CDS |
| TAAGAGGATGATCAAGAATC+GGG | 0.505249 | 7_4:-7486576 | Msa1138160:CDS |
| TCTTATTTCTCCTTTCACTA+CGG | 0.532558 | 7_4:+7486594 | None:intergenic |
| GCGTTCACGAGCTAGAAAAC+AGG | 0.535637 | 7_4:-7486543 | Msa1138160:CDS |
| TTTACGCTCGCAGAAACCCT+TGG | 0.536841 | 7_4:+7486707 | None:intergenic |
| TGAAAATCAGTGACAAGAGA+TGG | 0.550991 | 7_4:+7486755 | None:intergenic |
| ATCAGTGACAAGAGATGGTG+GGG | 0.566918 | 7_4:+7486760 | None:intergenic |
| CTGATATTAGCCGTAGTGAA+AGG | 0.586903 | 7_4:-7486604 | Msa1138160:CDS |
| AATCAGTGACAAGAGATGGT+GGG | 0.594382 | 7_4:+7486759 | None:intergenic |
| GCAGCAAGTTCAACTATTGG+AGG | 0.594793 | 7_4:-7485812 | Msa1138160:CDS |
| ACCAAAACATTTCTGCACCA+AGG | 0.599373 | 7_4:-7486724 | Msa1138160:CDS |
| AAATCAGTGACAAGAGATGG+TGG | 0.615325 | 7_4:+7486758 | None:intergenic |
| ACTTAGAAGACAGCAACAAG+AGG | 0.615687 | 7_4:-7485776 | Msa1138160:intron |
| ATGGTGGGGTCATTGAACTA+GGG | 0.621945 | 7_4:+7486774 | None:intergenic |
| TCACCGTATGATCAGAATGT+GGG | 0.625766 | 7_4:-7486680 | Msa1138160:intron |
| GTAGTGAAAGGAGAAATAAG+AGG | 0.627501 | 7_4:-7486592 | Msa1138160:CDS |
| TTACGGGAAGCAGAAAGCGT+TGG | 0.638395 | 7_4:-7484816 | Msa1138160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAGAAATATATTAAAC+GGG | + | chr7_4:7485693-7485712 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTGAAAGAA+AGG | - | chr7_4:7485780-7485799 | Msa1138160:CDS | 10.0% |
| !! | TAAAAAAAATTTACTGAAAT+GGG | + | chr7_4:7486732-7486751 | None:intergenic | 10.0% |
| !! | ATAAAAAAAATTTACTGAAA+TGG | + | chr7_4:7486733-7486752 | None:intergenic | 10.0% |
| !!! | TTTAGGTTTTTTTATTTTTT+TGG | - | chr7_4:7486875-7486894 | Msa1138160:CDS | 10.0% |
| !!! | TTAGGTTTTTTTATTTTTTT+GGG | - | chr7_4:7486876-7486895 | Msa1138160:CDS | 10.0% |
| !! | TATTTAGAAATATATTAAAC+GGG | + | chr7_4:7485693-7485712 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTGAAAGAA+AGG | - | chr7_4:7485780-7485799 | Msa1138160:CDS | 10.0% |
| !! | TAAAAAAAATTTACTGAAAT+GGG | + | chr7_4:7486732-7486751 | None:intergenic | 10.0% |
| !! | ATAAAAAAAATTTACTGAAA+TGG | + | chr7_4:7486733-7486752 | None:intergenic | 10.0% |
| !!! | TTTAGGTTTTTTTATTTTTT+TGG | - | chr7_4:7486875-7486894 | Msa1138160:CDS | 10.0% |
| !!! | TTAGGTTTTTTTATTTTTTT+GGG | - | chr7_4:7486876-7486895 | Msa1138160:CDS | 10.0% |
| !! | TCATGAATGTTATTAAAAAA+TGG | + | chr7_4:7485408-7485427 | None:intergenic | 15.0% |
| !! | TATGAATTAATCTAGAAAAT+TGG | - | chr7_4:7485549-7485568 | Msa1138160:intron | 15.0% |
| !! | ATTTAGAAATATATTAAACG+GGG | + | chr7_4:7485692-7485711 | None:intergenic | 15.0% |
| !!! | AAAGTTTTATTTGTATATTG+TGG | - | chr7_4:7485737-7485756 | Msa1138160:intron | 15.0% |
| !!! | TATGTATTTGGTATAAATTT+TGG | - | chr7_4:7486044-7486063 | Msa1138160:intron | 15.0% |
| !! | TTCAAAAAAAAATTATGATG+TGG | - | chr7_4:7486187-7486206 | Msa1138160:intron | 15.0% |
| !!! | AATGAACAATAACTTTTTTT+GGG | + | chr7_4:7486286-7486305 | None:intergenic | 15.0% |
| !!! | TAATGAACAATAACTTTTTT+TGG | + | chr7_4:7486287-7486306 | None:intergenic | 15.0% |
| !! | TATTGTATTAGAAAATGAAA+TGG | - | chr7_4:7486521-7486540 | Msa1138160:intron | 15.0% |
| !! | AGAAAAAAATGTGATATATT+TGG | + | chr7_4:7486765-7486784 | None:intergenic | 15.0% |
| !! | TCATGAATGTTATTAAAAAA+TGG | + | chr7_4:7485408-7485427 | None:intergenic | 15.0% |
| !! | TATGAATTAATCTAGAAAAT+TGG | - | chr7_4:7485549-7485568 | Msa1138160:intron | 15.0% |
| !! | ATTTAGAAATATATTAAACG+GGG | + | chr7_4:7485692-7485711 | None:intergenic | 15.0% |
| !!! | AAAGTTTTATTTGTATATTG+TGG | - | chr7_4:7485737-7485756 | Msa1138160:intron | 15.0% |
| !!! | TATGTATTTGGTATAAATTT+TGG | - | chr7_4:7486044-7486063 | Msa1138160:intron | 15.0% |
| !! | TTCAAAAAAAAATTATGATG+TGG | - | chr7_4:7486187-7486206 | Msa1138160:intron | 15.0% |
| !!! | AATGAACAATAACTTTTTTT+GGG | + | chr7_4:7486286-7486305 | None:intergenic | 15.0% |
| !!! | TAATGAACAATAACTTTTTT+TGG | + | chr7_4:7486287-7486306 | None:intergenic | 15.0% |
| !! | TATTGTATTAGAAAATGAAA+TGG | - | chr7_4:7486521-7486540 | Msa1138160:intron | 15.0% |
| !! | AGAAAAAAATGTGATATATT+TGG | + | chr7_4:7486765-7486784 | None:intergenic | 15.0% |
| !!! | TCTAATTCTTTCATTTCTTT+TGG | - | chr7_4:7485085-7485104 | Msa1138160:intron | 20.0% |
| !! | TCTATAATATAACACAGTAT+TGG | + | chr7_4:7485367-7485386 | None:intergenic | 20.0% |
| !! | TTTAGAAATATATTAAACGG+GGG | + | chr7_4:7485691-7485710 | None:intergenic | 20.0% |
| !! | CAAATTAAAGAGAATGAAAT+GGG | + | chr7_4:7485993-7486012 | None:intergenic | 20.0% |
| !! | ACAAATTAAAGAGAATGAAA+TGG | + | chr7_4:7485994-7486013 | None:intergenic | 20.0% |
| !!! | GGTGAAAATTTTTATGTATT+TGG | - | chr7_4:7486032-7486051 | Msa1138160:intron | 20.0% |
| !! | AACATAAAATATTTACGATG+TGG | - | chr7_4:7486163-7486182 | Msa1138160:intron | 20.0% |
| !! | ATAATTTGGTTAATTCGAAA+CGG | + | chr7_4:7486323-7486342 | None:intergenic | 20.0% |
| !! | TAAGACAAATGTATAAACAA+AGG | - | chr7_4:7486362-7486381 | Msa1138160:intron | 20.0% |
| !!! | TCTAATTCTTTCATTTCTTT+TGG | - | chr7_4:7485085-7485104 | Msa1138160:intron | 20.0% |
| !! | TCTATAATATAACACAGTAT+TGG | + | chr7_4:7485367-7485386 | None:intergenic | 20.0% |
| !! | TTTAGAAATATATTAAACGG+GGG | + | chr7_4:7485691-7485710 | None:intergenic | 20.0% |
| !! | CAAATTAAAGAGAATGAAAT+GGG | + | chr7_4:7485993-7486012 | None:intergenic | 20.0% |
| !! | ACAAATTAAAGAGAATGAAA+TGG | + | chr7_4:7485994-7486013 | None:intergenic | 20.0% |
| !!! | GGTGAAAATTTTTATGTATT+TGG | - | chr7_4:7486032-7486051 | Msa1138160:intron | 20.0% |
| !! | AACATAAAATATTTACGATG+TGG | - | chr7_4:7486163-7486182 | Msa1138160:intron | 20.0% |
| !! | ATAATTTGGTTAATTCGAAA+CGG | + | chr7_4:7486323-7486342 | None:intergenic | 20.0% |
| !! | TAAGACAAATGTATAAACAA+AGG | - | chr7_4:7486362-7486381 | Msa1138160:intron | 20.0% |
| ! | TGTTTGAAAAGAGATTCTTA+GGG | + | chr7_4:7485231-7485250 | None:intergenic | 25.0% |
| !!! | AATATAACACAGTATTGGTA+GGG | + | chr7_4:7485362-7485381 | None:intergenic | 25.0% |
| !!! | TAATATAACACAGTATTGGT+AGG | + | chr7_4:7485363-7485382 | None:intergenic | 25.0% |
| ! | GTATCATAGAATGATTTGAT+AGG | - | chr7_4:7485571-7485590 | Msa1138160:intron | 25.0% |
| ! | TATTTGTATATTGTGGTGAA+AGG | - | chr7_4:7485744-7485763 | Msa1138160:intron | 25.0% |
| !!! | GATTCATTTACTTTTTTGTG+TGG | - | chr7_4:7485868-7485887 | Msa1138160:intron | 25.0% |
| !! | TGTTCTTTTCAGTCAAAAAA+TGG | - | chr7_4:7486011-7486030 | Msa1138160:intron | 25.0% |
| ! | TGTGAAATGAGCAAATAATT+TGG | + | chr7_4:7486337-7486356 | None:intergenic | 25.0% |
| ! | TAACTGTTCTTGTTAAGTAT+TGG | - | chr7_4:7486402-7486421 | Msa1138160:intron | 25.0% |
| ! | GAAATATAATGAATTGAGAG+TGG | - | chr7_4:7486454-7486473 | Msa1138160:intron | 25.0% |
| !! | ATTGATTCATTTACTTAGTG+TGG | - | chr7_4:7486607-7486626 | Msa1138160:CDS | 25.0% |
| ! | TGTTTGAAAAGAGATTCTTA+GGG | + | chr7_4:7485231-7485250 | None:intergenic | 25.0% |
| !!! | AATATAACACAGTATTGGTA+GGG | + | chr7_4:7485362-7485381 | None:intergenic | 25.0% |
| !!! | TAATATAACACAGTATTGGT+AGG | + | chr7_4:7485363-7485382 | None:intergenic | 25.0% |
| ! | GTATCATAGAATGATTTGAT+AGG | - | chr7_4:7485571-7485590 | Msa1138160:intron | 25.0% |
| ! | TATTTGTATATTGTGGTGAA+AGG | - | chr7_4:7485744-7485763 | Msa1138160:intron | 25.0% |
| !!! | GATTCATTTACTTTTTTGTG+TGG | - | chr7_4:7485868-7485887 | Msa1138160:intron | 25.0% |
| !! | TGTTCTTTTCAGTCAAAAAA+TGG | - | chr7_4:7486011-7486030 | Msa1138160:intron | 25.0% |
| ! | TGTGAAATGAGCAAATAATT+TGG | + | chr7_4:7486337-7486356 | None:intergenic | 25.0% |
| ! | TAACTGTTCTTGTTAAGTAT+TGG | - | chr7_4:7486402-7486421 | Msa1138160:intron | 25.0% |
| ! | GAAATATAATGAATTGAGAG+TGG | - | chr7_4:7486454-7486473 | Msa1138160:intron | 25.0% |
| !! | ATTGATTCATTTACTTAGTG+TGG | - | chr7_4:7486607-7486626 | Msa1138160:CDS | 25.0% |
| ! | AGTACTCGTAATTGTACTTT+TGG | - | chr7_4:7484803-7484822 | Msa1138160:CDS | 30.0% |
| ! | GAAGAATAATCGATGCTTTT+GGG | + | chr7_4:7484878-7484897 | None:intergenic | 30.0% |
| ! | AGAAGAATAATCGATGCTTT+TGG | + | chr7_4:7484879-7484898 | None:intergenic | 30.0% |
| ! | TCTTATTTCTCCTTTCACTA+CGG | + | chr7_4:7485141-7485160 | None:intergenic | 30.0% |
| ATAAGAGGATGATCAAGAAT+CGG | - | chr7_4:7485155-7485174 | Msa1138160:intron | 30.0% | |
| GTGTTTGAAAAGAGATTCTT+AGG | + | chr7_4:7485232-7485251 | None:intergenic | 30.0% | |
| !! | ATATAACACAGTATTGGTAG+GGG | + | chr7_4:7485361-7485380 | None:intergenic | 30.0% |
| TCAAATAGAGATTTGTAGAG+AGG | - | chr7_4:7485521-7485540 | Msa1138160:intron | 30.0% | |
| GGAGTATGCTTATAACATAA+AGG | - | chr7_4:7485801-7485820 | Msa1138160:CDS | 30.0% | |
| GTATGCTTATAACATAAAGG+TGG | - | chr7_4:7485804-7485823 | Msa1138160:CDS | 30.0% | |
| !!! | CTTTTTTGTGTGGTTATTTC+AGG | - | chr7_4:7485878-7485897 | Msa1138160:intron | 30.0% |
| GCTACACATTATATTATGCT+TGG | - | chr7_4:7486122-7486141 | Msa1138160:intron | 30.0% | |
| TCACTTTGCATTTATGTTAG+TGG | + | chr7_4:7486436-7486455 | None:intergenic | 30.0% | |
| ! | TTACTTAGTGTGGTTATTTC+AGG | - | chr7_4:7486617-7486636 | Msa1138160:CDS | 30.0% |
| GTACTAGTAGGATTGAATTT+AGG | - | chr7_4:7486858-7486877 | Msa1138160:CDS | 30.0% | |
| ! | AGTACTCGTAATTGTACTTT+TGG | - | chr7_4:7484803-7484822 | Msa1138160:CDS | 30.0% |
| ! | GAAGAATAATCGATGCTTTT+GGG | + | chr7_4:7484878-7484897 | None:intergenic | 30.0% |
| ! | AGAAGAATAATCGATGCTTT+TGG | + | chr7_4:7484879-7484898 | None:intergenic | 30.0% |
| ! | TCTTATTTCTCCTTTCACTA+CGG | + | chr7_4:7485141-7485160 | None:intergenic | 30.0% |
| ATAAGAGGATGATCAAGAAT+CGG | - | chr7_4:7485155-7485174 | Msa1138160:intron | 30.0% | |
| GTGTTTGAAAAGAGATTCTT+AGG | + | chr7_4:7485232-7485251 | None:intergenic | 30.0% | |
| !! | ATATAACACAGTATTGGTAG+GGG | + | chr7_4:7485361-7485380 | None:intergenic | 30.0% |
| TCAAATAGAGATTTGTAGAG+AGG | - | chr7_4:7485521-7485540 | Msa1138160:intron | 30.0% | |
| GGAGTATGCTTATAACATAA+AGG | - | chr7_4:7485801-7485820 | Msa1138160:CDS | 30.0% | |
| GTATGCTTATAACATAAAGG+TGG | - | chr7_4:7485804-7485823 | Msa1138160:CDS | 30.0% | |
| !!! | CTTTTTTGTGTGGTTATTTC+AGG | - | chr7_4:7485878-7485897 | Msa1138160:intron | 30.0% |
| GCTACACATTATATTATGCT+TGG | - | chr7_4:7486122-7486141 | Msa1138160:intron | 30.0% | |
| TCACTTTGCATTTATGTTAG+TGG | + | chr7_4:7486436-7486455 | None:intergenic | 30.0% | |
| ! | TTACTTAGTGTGGTTATTTC+AGG | - | chr7_4:7486617-7486636 | Msa1138160:CDS | 30.0% |
| GTACTAGTAGGATTGAATTT+AGG | - | chr7_4:7486858-7486877 | Msa1138160:CDS | 30.0% | |
| ! | ACTCGTAATTGTACTTTTGG+TGG | - | chr7_4:7484806-7484825 | Msa1138160:CDS | 35.0% |
| !! | AATAATCGATGCTTTTGGGT+GGG | + | chr7_4:7484874-7484893 | None:intergenic | 35.0% |
| !! | ATTTTGATCTGAAGCAACGA+AGG | + | chr7_4:7484915-7484934 | None:intergenic | 35.0% |
| CATTGAACTAGGGCAATAAA+AGG | + | chr7_4:7484951-7484970 | None:intergenic | 35.0% | |
| TGAAAATCAGTGACAAGAGA+TGG | + | chr7_4:7484980-7484999 | None:intergenic | 35.0% | |
| GTAGTGAAAGGAGAAATAAG+AGG | - | chr7_4:7485140-7485159 | Msa1138160:intron | 35.0% | |
| TAAGAGGATGATCAAGAATC+GGG | - | chr7_4:7485156-7485175 | Msa1138160:intron | 35.0% | |
| TTGTATATTGTGGTGAAAGG+TGG | - | chr7_4:7485747-7485766 | Msa1138160:intron | 35.0% | |
| AACTAACATGTTGCAAGTGT+TGG | - | chr7_4:7486211-7486230 | Msa1138160:intron | 35.0% | |
| ATTTGGTTAATTCGAAACGG+AGG | + | chr7_4:7486320-7486339 | None:intergenic | 35.0% | |
| AAACAAAGGAGAGAGAAAAG+TGG | - | chr7_4:7486376-7486395 | Msa1138160:intron | 35.0% | |
| TCGAATCGCTCAATTATCAT+AGG | - | chr7_4:7486572-7486591 | Msa1138160:CDS | 35.0% | |
| CTCAATTATCATAGGACAGA+GGG | - | chr7_4:7486580-7486599 | Msa1138160:CDS | 35.0% | |
| CAATTCCACATAGTACTAGT+AGG | - | chr7_4:7486846-7486865 | Msa1138160:CDS | 35.0% | |
| TCAATCCTACTAGTACTATG+TGG | + | chr7_4:7486854-7486873 | None:intergenic | 35.0% | |
| TGTCAATGTGAATGCAGTTA+CGG | - | chr7_4:7486899-7486918 | Msa1138160:CDS | 35.0% | |
| ! | ACTCGTAATTGTACTTTTGG+TGG | - | chr7_4:7484806-7484825 | Msa1138160:CDS | 35.0% |
| !! | AATAATCGATGCTTTTGGGT+GGG | + | chr7_4:7484874-7484893 | None:intergenic | 35.0% |
| !! | ATTTTGATCTGAAGCAACGA+AGG | + | chr7_4:7484915-7484934 | None:intergenic | 35.0% |
| CATTGAACTAGGGCAATAAA+AGG | + | chr7_4:7484951-7484970 | None:intergenic | 35.0% | |
| TGAAAATCAGTGACAAGAGA+TGG | + | chr7_4:7484980-7484999 | None:intergenic | 35.0% | |
| GTAGTGAAAGGAGAAATAAG+AGG | - | chr7_4:7485140-7485159 | Msa1138160:intron | 35.0% | |
| TAAGAGGATGATCAAGAATC+GGG | - | chr7_4:7485156-7485175 | Msa1138160:intron | 35.0% | |
| TTGTATATTGTGGTGAAAGG+TGG | - | chr7_4:7485747-7485766 | Msa1138160:intron | 35.0% | |
| AACTAACATGTTGCAAGTGT+TGG | - | chr7_4:7486211-7486230 | Msa1138160:intron | 35.0% | |
| ATTTGGTTAATTCGAAACGG+AGG | + | chr7_4:7486320-7486339 | None:intergenic | 35.0% | |
| AAACAAAGGAGAGAGAAAAG+TGG | - | chr7_4:7486376-7486395 | Msa1138160:intron | 35.0% | |
| TCGAATCGCTCAATTATCAT+AGG | - | chr7_4:7486572-7486591 | Msa1138160:CDS | 35.0% | |
| CTCAATTATCATAGGACAGA+GGG | - | chr7_4:7486580-7486599 | Msa1138160:CDS | 35.0% | |
| CAATTCCACATAGTACTAGT+AGG | - | chr7_4:7486846-7486865 | Msa1138160:CDS | 35.0% | |
| TCAATCCTACTAGTACTATG+TGG | + | chr7_4:7486854-7486873 | None:intergenic | 35.0% | |
| TGTCAATGTGAATGCAGTTA+CGG | - | chr7_4:7486899-7486918 | Msa1138160:CDS | 35.0% | |
| CTTGAGTGTGAAAGTCTTGA+AGG | + | chr7_4:7484838-7484857 | None:intergenic | 40.0% | |
| ! | GAATAATCGATGCTTTTGGG+TGG | + | chr7_4:7484875-7484894 | None:intergenic | 40.0% |
| AATCAGTGACAAGAGATGGT+GGG | + | chr7_4:7484976-7484995 | None:intergenic | 40.0% | |
| AAATCAGTGACAAGAGATGG+TGG | + | chr7_4:7484977-7484996 | None:intergenic | 40.0% | |
| ACCAAAACATTTCTGCACCA+AGG | - | chr7_4:7485008-7485027 | Msa1138160:intron | 40.0% | |
| CCAAAACATTTCTGCACCAA+GGG | - | chr7_4:7485009-7485028 | Msa1138160:intron | 40.0% | |
| ACATTCTGATCATACGGTGA+AGG | + | chr7_4:7485052-7485071 | None:intergenic | 40.0% | |
| TTCACCGTATGATCAGAATG+TGG | - | chr7_4:7485051-7485070 | Msa1138160:intron | 40.0% | |
| TCACCGTATGATCAGAATGT+GGG | - | chr7_4:7485052-7485071 | Msa1138160:intron | 40.0% | |
| ACACCCACATTCTGATCATA+CGG | + | chr7_4:7485058-7485077 | None:intergenic | 40.0% | |
| CTGATATTAGCCGTAGTGAA+AGG | - | chr7_4:7485128-7485147 | Msa1138160:intron | 40.0% | |
| GGAATAGAGATTCTTAGGGA+CGG | - | chr7_4:7485303-7485322 | Msa1138160:intron | 40.0% | |
| ATTCTTAGGGACGGATATAG+AGG | - | chr7_4:7485312-7485331 | Msa1138160:intron | 40.0% | |
| TTCTTAGGGACGGATATAGA+GGG | - | chr7_4:7485313-7485332 | Msa1138160:intron | 40.0% | |
| AGAGCAGCAAGTTCAACTAT+TGG | - | chr7_4:7485917-7485936 | Msa1138160:intron | 40.0% | |
| ACTTAGAAGACAGCAACAAG+AGG | - | chr7_4:7485956-7485975 | Msa1138160:intron | 40.0% | |
| !! | GTTGCAAGTGTTGGTGATTT+AGG | - | chr7_4:7486220-7486239 | Msa1138160:intron | 40.0% |
| !! | CAAGTGTTGGTGATTTAGGT+CGG | - | chr7_4:7486224-7486243 | Msa1138160:intron | 40.0% |
| GCTCAATTATCATAGGACAG+AGG | - | chr7_4:7486579-7486598 | Msa1138160:CDS | 40.0% | |
| ACTTCGAAAACAGCAACAAG+AGG | - | chr7_4:7486695-7486714 | Msa1138160:intron | 40.0% | |
| GTCAATGTGAATGCAGTTAC+GGG | - | chr7_4:7486900-7486919 | Msa1138160:CDS | 40.0% | |
| CTTGAGTGTGAAAGTCTTGA+AGG | + | chr7_4:7484838-7484857 | None:intergenic | 40.0% | |
| ! | GAATAATCGATGCTTTTGGG+TGG | + | chr7_4:7484875-7484894 | None:intergenic | 40.0% |
| AATCAGTGACAAGAGATGGT+GGG | + | chr7_4:7484976-7484995 | None:intergenic | 40.0% | |
| AAATCAGTGACAAGAGATGG+TGG | + | chr7_4:7484977-7484996 | None:intergenic | 40.0% | |
| ACCAAAACATTTCTGCACCA+AGG | - | chr7_4:7485008-7485027 | Msa1138160:intron | 40.0% | |
| CCAAAACATTTCTGCACCAA+GGG | - | chr7_4:7485009-7485028 | Msa1138160:intron | 40.0% | |
| ACATTCTGATCATACGGTGA+AGG | + | chr7_4:7485052-7485071 | None:intergenic | 40.0% | |
| TTCACCGTATGATCAGAATG+TGG | - | chr7_4:7485051-7485070 | Msa1138160:intron | 40.0% | |
| TCACCGTATGATCAGAATGT+GGG | - | chr7_4:7485052-7485071 | Msa1138160:intron | 40.0% | |
| ACACCCACATTCTGATCATA+CGG | + | chr7_4:7485058-7485077 | None:intergenic | 40.0% | |
| CTGATATTAGCCGTAGTGAA+AGG | - | chr7_4:7485128-7485147 | Msa1138160:intron | 40.0% | |
| GGAATAGAGATTCTTAGGGA+CGG | - | chr7_4:7485303-7485322 | Msa1138160:intron | 40.0% | |
| ATTCTTAGGGACGGATATAG+AGG | - | chr7_4:7485312-7485331 | Msa1138160:intron | 40.0% | |
| TTCTTAGGGACGGATATAGA+GGG | - | chr7_4:7485313-7485332 | Msa1138160:intron | 40.0% | |
| AGAGCAGCAAGTTCAACTAT+TGG | - | chr7_4:7485917-7485936 | Msa1138160:intron | 40.0% | |
| ACTTAGAAGACAGCAACAAG+AGG | - | chr7_4:7485956-7485975 | Msa1138160:intron | 40.0% | |
| !! | GTTGCAAGTGTTGGTGATTT+AGG | - | chr7_4:7486220-7486239 | Msa1138160:intron | 40.0% |
| !! | CAAGTGTTGGTGATTTAGGT+CGG | - | chr7_4:7486224-7486243 | Msa1138160:intron | 40.0% |
| GCTCAATTATCATAGGACAG+AGG | - | chr7_4:7486579-7486598 | Msa1138160:CDS | 40.0% | |
| ACTTCGAAAACAGCAACAAG+AGG | - | chr7_4:7486695-7486714 | Msa1138160:intron | 40.0% | |
| GTCAATGTGAATGCAGTTAC+GGG | - | chr7_4:7486900-7486919 | Msa1138160:CDS | 40.0% | |
| ! | TTTGGGTGGGTCTGAAGTAA+GGG | + | chr7_4:7484861-7484880 | None:intergenic | 45.0% |
| !! | TTTTGGGTGGGTCTGAAGTA+AGG | + | chr7_4:7484862-7484881 | None:intergenic | 45.0% |
| ! | ATGGTGGGGTCATTGAACTA+GGG | + | chr7_4:7484961-7484980 | None:intergenic | 45.0% |
| ATCAGTGACAAGAGATGGTG+GGG | + | chr7_4:7484975-7484994 | None:intergenic | 45.0% | |
| !! | CCCTTGGTGCAGAAATGTTT+TGG | + | chr7_4:7485012-7485031 | None:intergenic | 45.0% |
| GGCGGGAATAGAGATTCTTA+GGG | - | chr7_4:7485299-7485318 | Msa1138160:intron | 45.0% | |
| TCTTAGGGACGGATATAGAG+GGG | - | chr7_4:7485314-7485333 | Msa1138160:intron | 45.0% | |
| !! | AACACAGTATTGGTAGGGGT+GGG | + | chr7_4:7485357-7485376 | None:intergenic | 45.0% |
| !! | TAACACAGTATTGGTAGGGG+TGG | + | chr7_4:7485358-7485377 | None:intergenic | 45.0% |
| GCAGCAAGTTCAACTATTGG+AGG | - | chr7_4:7485920-7485939 | Msa1138160:intron | 45.0% | |
| GCAGAAAGTTCAGCTATTGC+AGG | - | chr7_4:7486659-7486678 | Msa1138160:CDS | 45.0% | |
| ! | TTTGGGTGGGTCTGAAGTAA+GGG | + | chr7_4:7484861-7484880 | None:intergenic | 45.0% |
| !! | TTTTGGGTGGGTCTGAAGTA+AGG | + | chr7_4:7484862-7484881 | None:intergenic | 45.0% |
| ! | ATGGTGGGGTCATTGAACTA+GGG | + | chr7_4:7484961-7484980 | None:intergenic | 45.0% |
| ATCAGTGACAAGAGATGGTG+GGG | + | chr7_4:7484975-7484994 | None:intergenic | 45.0% | |
| !! | CCCTTGGTGCAGAAATGTTT+TGG | + | chr7_4:7485012-7485031 | None:intergenic | 45.0% |
| GGCGGGAATAGAGATTCTTA+GGG | - | chr7_4:7485299-7485318 | Msa1138160:intron | 45.0% | |
| TCTTAGGGACGGATATAGAG+GGG | - | chr7_4:7485314-7485333 | Msa1138160:intron | 45.0% | |
| !! | AACACAGTATTGGTAGGGGT+GGG | + | chr7_4:7485357-7485376 | None:intergenic | 45.0% |
| !! | TAACACAGTATTGGTAGGGG+TGG | + | chr7_4:7485358-7485377 | None:intergenic | 45.0% |
| GCAGCAAGTTCAACTATTGG+AGG | - | chr7_4:7485920-7485939 | Msa1138160:intron | 45.0% | |
| GCAGAAAGTTCAGCTATTGC+AGG | - | chr7_4:7486659-7486678 | Msa1138160:CDS | 45.0% | |
| !! | TTATTTAGAAATATATTAAA+CGG | + | chr7_4:7485694-7485713 | None:intergenic | 5.0% |
| !! | TTATTTAGAAATATATTAAA+CGG | + | chr7_4:7485694-7485713 | None:intergenic | 5.0% |
| !! | GATGGTGGGGTCATTGAACT+AGG | + | chr7_4:7484962-7484981 | None:intergenic | 50.0% |
| TTTACGCTCGCAGAAACCCT+TGG | + | chr7_4:7485028-7485047 | None:intergenic | 50.0% | |
| GCGTTCACGAGCTAGAAAAC+AGG | - | chr7_4:7485189-7485208 | Msa1138160:intron | 50.0% | |
| ATCTCTATTCCCGCCCACAT+AGG | + | chr7_4:7485294-7485313 | None:intergenic | 50.0% | |
| GGGCGGGAATAGAGATTCTT+AGG | - | chr7_4:7485298-7485317 | Msa1138160:intron | 50.0% | |
| CTTAGGGACGGATATAGAGG+GGG | - | chr7_4:7485315-7485334 | Msa1138160:intron | 50.0% | |
| !! | ACACAGTATTGGTAGGGGTG+GGG | + | chr7_4:7485356-7485375 | None:intergenic | 50.0% |
| ! | TTACGGGAAGCAGAAAGCGT+TGG | - | chr7_4:7486916-7486935 | Msa1138160:CDS | 50.0% |
| !! | GATGGTGGGGTCATTGAACT+AGG | + | chr7_4:7484962-7484981 | None:intergenic | 50.0% |
| TTTACGCTCGCAGAAACCCT+TGG | + | chr7_4:7485028-7485047 | None:intergenic | 50.0% | |
| GCGTTCACGAGCTAGAAAAC+AGG | - | chr7_4:7485189-7485208 | Msa1138160:intron | 50.0% | |
| ATCTCTATTCCCGCCCACAT+AGG | + | chr7_4:7485294-7485313 | None:intergenic | 50.0% | |
| GGGCGGGAATAGAGATTCTT+AGG | - | chr7_4:7485298-7485317 | Msa1138160:intron | 50.0% | |
| CTTAGGGACGGATATAGAGG+GGG | - | chr7_4:7485315-7485334 | Msa1138160:intron | 50.0% | |
| !! | ACACAGTATTGGTAGGGGTG+GGG | + | chr7_4:7485356-7485375 | None:intergenic | 50.0% |
| ! | TTACGGGAAGCAGAAAGCGT+TGG | - | chr7_4:7486916-7486935 | Msa1138160:CDS | 50.0% |
| ACATAGGCATGGCAATGGGG+CGG | + | chr7_4:7485278-7485297 | None:intergenic | 55.0% | |
| CCCACATAGGCATGGCAATG+GGG | + | chr7_4:7485281-7485300 | None:intergenic | 55.0% | |
| CCCCATTGCCATGCCTATGT+GGG | - | chr7_4:7485278-7485297 | Msa1138160:intron | 55.0% | |
| GCCCACATAGGCATGGCAAT+GGG | + | chr7_4:7485282-7485301 | None:intergenic | 55.0% | |
| CATTGCCATGCCTATGTGGG+CGG | - | chr7_4:7485281-7485300 | Msa1138160:intron | 55.0% | |
| ATTGCCATGCCTATGTGGGC+GGG | - | chr7_4:7485282-7485301 | Msa1138160:intron | 55.0% | |
| TATTCCCGCCCACATAGGCA+TGG | + | chr7_4:7485289-7485308 | None:intergenic | 55.0% | |
| !! | ACAGTATTGGTAGGGGTGGG+GGG | + | chr7_4:7485354-7485373 | None:intergenic | 55.0% |
| !! | CACAGTATTGGTAGGGGTGG+GGG | + | chr7_4:7485355-7485374 | None:intergenic | 55.0% |
| ACATAGGCATGGCAATGGGG+CGG | + | chr7_4:7485278-7485297 | None:intergenic | 55.0% | |
| CCCACATAGGCATGGCAATG+GGG | + | chr7_4:7485281-7485300 | None:intergenic | 55.0% | |
| CCCCATTGCCATGCCTATGT+GGG | - | chr7_4:7485278-7485297 | Msa1138160:intron | 55.0% | |
| GCCCACATAGGCATGGCAAT+GGG | + | chr7_4:7485282-7485301 | None:intergenic | 55.0% | |
| CATTGCCATGCCTATGTGGG+CGG | - | chr7_4:7485281-7485300 | Msa1138160:intron | 55.0% | |
| ATTGCCATGCCTATGTGGGC+GGG | - | chr7_4:7485282-7485301 | Msa1138160:intron | 55.0% | |
| TATTCCCGCCCACATAGGCA+TGG | + | chr7_4:7485289-7485308 | None:intergenic | 55.0% | |
| !! | ACAGTATTGGTAGGGGTGGG+GGG | + | chr7_4:7485354-7485373 | None:intergenic | 55.0% |
| !! | CACAGTATTGGTAGGGGTGG+GGG | + | chr7_4:7485355-7485374 | None:intergenic | 55.0% |
| GCGGGGTGGGGAAGGATATA+AGG | + | chr7_4:7485259-7485278 | None:intergenic | 60.0% | |
| ATAGGCATGGCAATGGGGCG+GGG | + | chr7_4:7485276-7485295 | None:intergenic | 60.0% | |
| CATAGGCATGGCAATGGGGC+GGG | + | chr7_4:7485277-7485296 | None:intergenic | 60.0% | |
| GCCCCATTGCCATGCCTATG+TGG | - | chr7_4:7485277-7485296 | Msa1138160:intron | 60.0% | |
| CGCCCACATAGGCATGGCAA+TGG | + | chr7_4:7485283-7485302 | None:intergenic | 60.0% | |
| GCGGGGTGGGGAAGGATATA+AGG | + | chr7_4:7485259-7485278 | None:intergenic | 60.0% | |
| ATAGGCATGGCAATGGGGCG+GGG | + | chr7_4:7485276-7485295 | None:intergenic | 60.0% | |
| CATAGGCATGGCAATGGGGC+GGG | + | chr7_4:7485277-7485296 | None:intergenic | 60.0% | |
| GCCCCATTGCCATGCCTATG+TGG | - | chr7_4:7485277-7485296 | Msa1138160:intron | 60.0% | |
| CGCCCACATAGGCATGGCAA+TGG | + | chr7_4:7485283-7485302 | None:intergenic | 60.0% | |
| TATTGGTAGGGGTGGGGGGC+TGG | + | chr7_4:7485350-7485369 | None:intergenic | 65.0% | |
| TATTGGTAGGGGTGGGGGGC+TGG | + | chr7_4:7485350-7485369 | None:intergenic | 65.0% | |
| CATGGCAATGGGGCGGGGTG+GGG | + | chr7_4:7485271-7485290 | None:intergenic | 70.0% | |
| GCATGGCAATGGGGCGGGGT+GGG | + | chr7_4:7485272-7485291 | None:intergenic | 70.0% | |
| CATGGCAATGGGGCGGGGTG+GGG | + | chr7_4:7485271-7485290 | None:intergenic | 70.0% | |
| GCATGGCAATGGGGCGGGGT+GGG | + | chr7_4:7485272-7485291 | None:intergenic | 70.0% | |
| GCAATGGGGCGGGGTGGGGA+AGG | + | chr7_4:7485267-7485286 | None:intergenic | 75.0% | |
| GGCATGGCAATGGGGCGGGG+TGG | + | chr7_4:7485273-7485292 | None:intergenic | 75.0% | |
| GCAATGGGGCGGGGTGGGGA+AGG | + | chr7_4:7485267-7485286 | None:intergenic | 75.0% | |
| GGCATGGCAATGGGGCGGGG+TGG | + | chr7_4:7485273-7485292 | None:intergenic | 75.0% | |
| !!! | AGGGGTGGGGGGCTGGTCGC+TGG | + | chr7_4:7485343-7485362 | None:intergenic | 80.0% |
| !!! | AGGGGTGGGGGGCTGGTCGC+TGG | + | chr7_4:7485343-7485362 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 7484800 | 7486954 | 7484800 | ID=Msa1138160;Name=Msa1138160 |
| chr7_4 | mRNA | 7484800 | 7486954 | 7484800 | ID=Msa1138160-mRNA-1;Parent=Msa1138160;Name=Msa1138160-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|0.75|0.33|0.5|4|0|172 |
| chr7_4 | exon | 7486712 | 7486954 | 7486712 | ID=Msa1138160-mRNA-1:exon:2069;Parent=Msa1138160-mRNA-1 |
| chr7_4 | exon | 7486529 | 7486687 | 7486529 | ID=Msa1138160-mRNA-1:exon:2068;Parent=Msa1138160-mRNA-1 |
| chr7_4 | exon | 7485777 | 7485854 | 7485777 | ID=Msa1138160-mRNA-1:exon:2067;Parent=Msa1138160-mRNA-1 |
| chr7_4 | exon | 7484800 | 7484838 | 7484800 | ID=Msa1138160-mRNA-1:exon:2066;Parent=Msa1138160-mRNA-1 |
| chr7_4 | CDS | 7486712 | 7486954 | 7486712 | ID=Msa1138160-mRNA-1:cds;Parent=Msa1138160-mRNA-1 |
| chr7_4 | CDS | 7486529 | 7486687 | 7486529 | ID=Msa1138160-mRNA-1:cds;Parent=Msa1138160-mRNA-1 |
| chr7_4 | CDS | 7485777 | 7485854 | 7485777 | ID=Msa1138160-mRNA-1:cds;Parent=Msa1138160-mRNA-1 |
| chr7_4 | CDS | 7484800 | 7484838 | 7484800 | ID=Msa1138160-mRNA-1:cds;Parent=Msa1138160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
