AlfalfaGEDB | Msa1138420

M. sativa cultivar zhongmu-4 / Msa1138420

KEGG: -
GO: GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958
PFAM: PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1138420	XP_013447643.1	81.128	869	149	7	1	859	1	864	0.0	1385

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1138420	sp\|Q9SCZ4\|FERON_ARATH	46.285	821	376	22	29	815	30	819	0.0	639

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1138420	A0A072TW39	81.128	869	149	7	1	859	1	864	0.0	1385

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1138420	MtrunA17_Chr7g0219781	81.128	869	149	7	1	859	1	864	1385
Msa1138420	MtrunA17_Chr7g0219671	79.422	865	168	6	1	859	1	861	1363
Msa1138420	MtrunA17_Chr7g0219691	78.802	835	167	6	28	858	31	859	1339
Msa1138420	MtrunA17_Chr7g0219721	76.471	867	187	8	1	858	1	859	1321
Msa1138420	MtrunA17_Chr7g0219681	74.849	827	186	10	3	823	6	816	1205
Msa1138420	MtrunA17_Chr7g0219611	69.963	819	213	6	26	843	27	813	1145
Msa1138420	MtrunA17_Chr4g0025961	65.132	869	278	11	1	858	1	855	1117
Msa1138420	MtrunA17_Chr7g0219651	67.123	876	235	10	3	858	6	848	1112
Msa1138420	MtrunA17_Chr7g0219651	64.943	870	272	13	1	861	996	1841	1069
Msa1138420	MtrunA17_Chr7g0219601	67.804	879	229	12	1	858	1	846	1105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1138420	AT3G51550.1	46.285	821	376	22	29	815	30	819	0.0	639
Msa1138420	AT5G39000.1	43.203	868	416	28	24	858	21	844	0.0	592
Msa1138420	AT5G28680.1	41.667	888	427	30	9	851	6	847	0.0	578
Msa1138420	AT5G28680.2	41.667	888	427	30	9	851	6	847	0.0	578
Msa1138420	AT3G04690.1	42.262	840	405	26	12	817	8	801	0.0	574
Msa1138420	AT5G38990.1	40.997	883	448	24	12	858	6	851	0.0	566
Msa1138420	AT1G30570.1	36.156	874	462	25	15	843	13	835	4.52e-149	464
Msa1138420	AT5G59700.1	38.535	833	415	28	1	810	1	759	7.37e-144	449
Msa1138420	AT4G39110.1	38.405	815	407	29	28	810	51	802	1.66e-141	445
Msa1138420	AT3G46290.1	37.178	815	430	25	15	810	11	762	3.36e-140	440

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Find 179 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCAACCCTTCACTT+TGG	0.485185	7_4:+7892083	Msa1138420:CDS
AAAATGCTGATGTGATATTG+TGG	0.565972	7_4:+7892731	Msa1138420:CDS
AAATAGCGGCACAAATGGGA+TGG	0.622880	7_4:-7893174	None:intergenic
AAATCCGATGTGTATTCTTT+TGG	0.293910	7_4:+7893774	Msa1138420:CDS
AACAAGAGGTTTATCTACCT+TGG	0.510770	7_4:+7896340	Msa1138420:CDS
AACCACAACAAGGATAACTA+TGG	0.428617	7_4:-7893019	None:intergenic
AACCATAGTTATCCTTGTTG+TGG	0.506974	7_4:+7893017	Msa1138420:CDS
AACCCAAATTCGTTTATCTA+AGG	0.328576	7_4:-7891777	None:intergenic
AACTGAGAGAGCTTTAGGCA+TGG	0.608064	7_4:-7896620	None:intergenic
AAGCTTTGTCGTTCAGAACT+TGG	0.387170	7_4:-7892330	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAATAGGAAAATGAGAGAT+AGG	-	chr7_4:7891676-7891695	None:intergenic	30.0%
TGATGGCTAAATTGTAATCA+GGG	-	chr7_4:7891730-7891749	None:intergenic	30.0%
TACAATTTAGCCATCAATTG+TGG	+	chr7_4:7891734-7891753	Msa1138420:CDS	30.0%
TGCCTTAGATAAACGAATTT+GGG	+	chr7_4:7891775-7891794	Msa1138420:CDS	30.0%
AACCCAAATTCGTTTATCTA+AGG	-	chr7_4:7891780-7891799	None:intergenic	30.0%
TTAGATAAACGAATTTGGGT+TGG	+	chr7_4:7891779-7891798	Msa1138420:CDS	30.0%
AATAAAAGGCGAACAAAAAC+AGG	-	chr7_4:7891971-7891990	None:intergenic	30.0%
TGGGAATGAAAGTTATGTTT+AGG	-	chr7_4:7892171-7892190	None:intergenic	30.0%
TTTGTGTAATAGAGAAAAGG+CGG	-	chr7_4:7892256-7892275	None:intergenic	30.0%
AGGTTTGTGTAATAGAGAAA+AGG	-	chr7_4:7892259-7892278	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	7891638	7896666	7891638	ID=Msa1138420;Name=Msa1138420
chr7_4	mRNA	7891638	7896666	7891638	ID=Msa1138420-mRNA-1;Parent=Msa1138420;Name=Msa1138420-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|982
chr7_4	exon	7891638	7894214	7891638	ID=Msa1138420-mRNA-1:exon:2170;Parent=Msa1138420-mRNA-1
chr7_4	exon	7896295	7896666	7896295	ID=Msa1138420-mRNA-1:exon:2171;Parent=Msa1138420-mRNA-1
chr7_4	CDS	7891638	7894214	7891638	ID=Msa1138420-mRNA-1:cds;Parent=Msa1138420-mRNA-1
chr7_4	CDS	7896295	7896666	7896295	ID=Msa1138420-mRNA-1:cds;Parent=Msa1138420-mRNA-1

Gene Sequence

>Msa1138420

ATGGCAAACACCAAAAATAACACTAAAATCACCCTCCTATCTCTCATTTTCCTATTGTTCCTTCTAGTTGCTAAATCATACGCATACAACCCTGATTACAATTTAGCCATCAATTGTGGCTCCTCAACAAACACTACTGCCTTAGATAAACGAATTTGGGTTGGTGATAATATTGATAACAAAAATCTCTTTTCCTTCACTGAACCAAAAACCACAAACCCATCTCTTAAAACATCACCCAATTCCCCGTCAAACATCCAAGCTCCGTACACATACGCACGTATCTCACTCTCAAATTTCACATACTCATTTTCTACCATCACTAATTCGCCTGTTTTTGTTCGCCTTTTATTTTACCCAACATCATACCAAAACTTTGAACCTTCTAATTCCCTTTCAAATGCACTTTTCTCTGTTAAAGTAAACAATAACCTAACCCTACTTGAAAACTTCAACCCTTCACTTTGGCTTCGTGACGATGAGGAAAAAATCACCAAAGAATATTGTATCCAAATCAATCCAAATGAGAACCTAAACATAACTTTCATTCCCAACAACATAAATCAATCAAATCCTTATTATGCTTTCATTAACGGAATCGAAGTTGTGTCTATGCCGCCTTTTCTCTATTACACAAACCTAAGCGACCAGAATTATCATTTTAAATCAATAGGCTTAGACATCACAGATTACCAAGTTCTGAACGACAAAGCTTTAGAGACAGTTTATAGAGTCAATGTTGGTGGCAATCAAGTTCCACAAAACCAAGATACAGGTATGTTTCGTAACTGGGACAATGATTTTCCTCGTTACTTGGAAAAAGAATATCCACAAAGTCTATCAAGTGATTATACTCATCATCCTAACTATAAAAACAACACCATTCCAAATTACACTGCACCAGAAGCTGTTTACTTAACTGCAAGAAGTTATGGAAAGTATGTGACAGAGGATTACAATGTAACATGGAATTTTGAGGTTGATTTGAACTTTACTTATATGGTAAGGTTACATTTTTGTGAGTTTGATTGGCATATCAATAATCCAGGTGATAGAGCCTTTCAGATTTTCATAGCCAACAGTTTGGCTGAGGAAAATGCTGATGTGATATTGTGGAGTGGTGCTCGTATGGTTCCTGTTCATAAGGATTATGCTGTGTTTATGTACTCTCAAGAAGGAGCCTCTCAAATTGAAAGAGTTAATCTTTCGATCAAGCTACAACAATTACCTATATTCACAAGATATCTTGATGTTACATTGAATGGAATCGAGATTTTTAAAATAAATGATAAAAATAATAATCTCTTTGGATCAAATCCAAAACCCATTATTTTAACTCCTAATGAAGAAGTTTTACCAACTCGAAAATCAAGGAAATCAACCATAGTTATCCTTGTTGTGGTTGTAGTTTCATGTCTTATGCTAGCAGCTGTTATTGGAATTCTAGTTTTTGTTCAAAGGAGAAGAAGGTTTGAATCTCATATTGATAGGGGAGAAATTTCATGCAAGACAAAGAAAGAGGATTCATCGTCTTTACCATCCCATTTGTGCCGCTATTTTACAATAGCAGAGATAAGAGCTGCTACAAACAACTTCGACAATGTTTTCATCATTGGAGTTGGAGGGTTCGGCAATGTGTACAAAGGTTATATTGATGACATACCTGTTGCGGTAAAACGTCTTAAACCAGGTTCTCAACAAGGTGTAAATGAGTTCATGAATGAGATCGAGTTACTCTCCCAGCTTCGTCATATTCACTTGGTTTCCCTCATTGGATATTGCAACGAAGGTGAGGAGATGATTCTGGTTTATGACTTCATGCAACGTGGCACTCTCCGTGAATATCTCTATGGTTCAGATAATGAACCTCTTACGTGGAAGCAGAGACTTGAGATTCTATTGGGGGCAGCCAGGGGGTTACATTATCTTCATGCAGGCGCAAAGCACAATATCATACACCGTGACGTGAAAAGTACCAACATACTCTTGGATGAAAAATGGGTGGCTAAGGTGTCTGATTTCGGGTTATCAAAAGTGGGACCAACAGGAATGTCGATGACTCATGTCAGCACCGTGGTGAAGGGCAGCCTTGGATATTTAGATCCCGAATACTACCTTCGTCAAAGGTTGACTCTAAAATCCGATGTGTATTCTTTTGGCGTGGTGCTTCTAGAGGTGTTGTGTGCAAGACCTCCTCTGGCTCGTTCCTCGGATAAGAAAAAATCGAGTTTGGTTGTTTGGTTCAAACAATGTTACAATGAAGGTGTGGTAATTGAAGAGATGGTGGACCTATTCATAAAAGATTCAATAACAGCTGAATGTTTGAAAAGTTATTGTGAGATGGCGTTGAGTTGTTTGCATGACGATGGGAATGAAAGAATGTCAATGAGTGATGTTGTTGGAGCGTTAGAGTTTGTGTTGCAGTTGGAGATGAGTGAGGAGGATAGTAGGTTCTGTAGAACCCAAGAAAAGGAAAAAAATCAGCAGAGTATAAATTTGCCGCAGTTTATGAGTGATGACGGGAGTGATGTGTGTTGCACAAGTAGTAGTGGAAACTATGAGTCACATACCAGCAAGGGTTTAATCATTGATAAAATCAAAAATACAATTTATGATGGGGATAACAAGAGGTTTATCTACCTTGGTGATGGTGCTGGAGATTATTGCCCTAGCTTGAGGTTTAAAGAGAGAGACTTTGTGATGCCAAGGAAGAACTTTCCAGTGTGGGATTTGATATGCAAAGACCCTTCACTTGTTAAGGCTGAAATTCATGCTTGGTGTGATGGAGAAGAGCTTGAACAAATTTTGATTCAACTGATCAACAAAATTATCATTGAAGAAAATGCTCAGTTCATTGCTACTGATTGCAAGCTGCAAACTCTATCAATTCCATTGCATGAAACCATGCCTAAAGCTCTCTCAGTTAGTGATATGACCCAATTCGAGTAG

Protein sequence

>Msa1138420

MANTKNNTKITLLSLIFLLFLLVAKSYAYNPDYNLAINCGSSTNTTALDKRIWVGDNIDNKNLFSFTEPKTTNPSLKTSPNSPSNIQAPYTYARISLSNFTYSFSTITNSPVFVRLLFYPTSYQNFEPSNSLSNALFSVKVNNNLTLLENFNPSLWLRDDEEKITKEYCIQINPNENLNITFIPNNINQSNPYYAFINGIEVVSMPPFLYYTNLSDQNYHFKSIGLDITDYQVLNDKALETVYRVNVGGNQVPQNQDTGMFRNWDNDFPRYLEKEYPQSLSSDYTHHPNYKNNTIPNYTAPEAVYLTARSYGKYVTEDYNVTWNFEVDLNFTYMVRLHFCEFDWHINNPGDRAFQIFIANSLAEENADVILWSGARMVPVHKDYAVFMYSQEGASQIERVNLSIKLQQLPIFTRYLDVTLNGIEIFKINDKNNNLFGSNPKPIILTPNEEVLPTRKSRKSTIVILVVVVVSCLMLAAVIGILVFVQRRRRFESHIDRGEISCKTKKEDSSSLPSHLCRYFTIAEIRAATNNFDNVFIIGVGGFGNVYKGYIDDIPVAVKRLKPGSQQGVNEFMNEIELLSQLRHIHLVSLIGYCNEGEEMILVYDFMQRGTLREYLYGSDNEPLTWKQRLEILLGAARGLHYLHAGAKHNIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGMSMTHVSTVVKGSLGYLDPEYYLRQRLTLKSDVYSFGVVLLEVLCARPPLARSSDKKKSSLVVWFKQCYNEGVVIEEMVDLFIKDSITAECLKSYCEMALSCLHDDGNERMSMSDVVGALEFVLQLEMSEEDSRFCRTQEKEKNQQSINLPQFMSDDGSDVCCTSSSGNYESHTSKGLIIDKIKNTIYDGDNKRFIYLGDGAGDYCPSLRFKERDFVMPRKNFPVWDLICKDPSLVKAEIHAWCDGEELEQILIQLINKIIIEENAQFIATDCKLQTLSIPLHETMPKALSVSDMTQFE*