Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1139080 | RHN44387.1 | 94.505 | 91 | 5 | 0 | 19 | 109 | 1 | 91 | 4.40e-54 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1139080 | sp|O48686|SNL3_ARATH | 48.182 | 110 | 48 | 3 | 4 | 107 | 4 | 110 | 2.55e-24 | 99.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1139080 | A0A396H0G0 | 94.505 | 91 | 5 | 0 | 19 | 109 | 1 | 91 | 2.10e-54 | 174 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1139080 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1139080 | MtrunA17_Chr7g0218911 | 94.505 | 91 | 5 | 0 | 19 | 109 | 1 | 91 | 4.05e-58 | 174 |
| Msa1139080 | MtrunA17_Chr5g0415031 | 44.144 | 111 | 53 | 2 | 2 | 107 | 33 | 139 | 8.07e-24 | 94.4 |
| Msa1139080 | MtrunA17_Chr6g0452001 | 44.444 | 108 | 51 | 2 | 6 | 106 | 53 | 158 | 8.81e-24 | 94.4 |
| Msa1139080 | MtrunA17_Chr8g0364231 | 43.810 | 105 | 54 | 1 | 7 | 106 | 33 | 137 | 8.98e-24 | 94.4 |
| Msa1139080 | MtrunA17_Chr1g0206781 | 48.718 | 78 | 40 | 0 | 7 | 84 | 2 | 79 | 1.80e-19 | 77.0 |
| Msa1139080 | MtrunA17_Chr6g0452021 | 42.857 | 105 | 55 | 2 | 6 | 106 | 33 | 136 | 2.78e-19 | 81.3 |
| Msa1139080 | MtrunA17_Chr1g0205861 | 40.244 | 82 | 49 | 0 | 3 | 84 | 3 | 84 | 3.23e-18 | 73.9 |
| Msa1139080 | MtrunA17_Chr1g0206771 | 45.263 | 95 | 50 | 1 | 13 | 107 | 13 | 105 | 3.40e-18 | 75.5 |
| Msa1139080 | MtrunA17_Chr1g0206771 | 43.478 | 69 | 39 | 0 | 16 | 84 | 95 | 163 | 3.91e-13 | 62.0 |
| Msa1139080 | MtrunA17_Chr8g0364021 | 39.024 | 82 | 50 | 0 | 4 | 85 | 32 | 113 | 1.68e-16 | 72.0 |
| Msa1139080 | MtrunA17_Chr1g0205811 | 43.210 | 81 | 46 | 0 | 6 | 86 | 4 | 84 | 1.25e-15 | 67.4 |
| Msa1139080 | MtrunA17_Chr4g0075861 | 39.326 | 89 | 47 | 1 | 20 | 101 | 176 | 264 | 6.40e-15 | 68.9 |
| Msa1139080 | MtrunA17_Chr4g0075861 | 35.294 | 102 | 62 | 2 | 6 | 107 | 2 | 99 | 1.02e-12 | 62.8 |
| Msa1139080 | MtrunA17_Chr4g0075861 | 35.443 | 79 | 51 | 0 | 8 | 86 | 81 | 159 | 7.22e-12 | 60.5 |
| Msa1139080 | MtrunA17_Chr4g0075971 | 47.761 | 67 | 35 | 0 | 20 | 86 | 176 | 242 | 9.21e-15 | 68.6 |
| Msa1139080 | MtrunA17_Chr4g0075971 | 38.298 | 94 | 54 | 2 | 14 | 107 | 10 | 99 | 9.32e-13 | 62.8 |
| Msa1139080 | MtrunA17_Chr4g0075971 | 35.443 | 79 | 51 | 0 | 8 | 86 | 81 | 159 | 8.81e-12 | 60.1 |
| Msa1139080 | MtrunA17_Chr3g0077861 | 40.000 | 80 | 47 | 1 | 10 | 88 | 84 | 163 | 2.17e-14 | 65.1 |
| Msa1139080 | MtrunA17_Chr1g0205821 | 30.275 | 109 | 71 | 1 | 5 | 108 | 2 | 110 | 7.21e-14 | 63.9 |
| Msa1139080 | MtrunA17_Chr1g0205821 | 43.478 | 69 | 39 | 0 | 17 | 85 | 100 | 168 | 4.33e-12 | 59.3 |
| Msa1139080 | MtrunA17_Chr7g0218891 | 41.463 | 82 | 46 | 1 | 16 | 95 | 185 | 266 | 1.09e-13 | 64.7 |
| Msa1139080 | MtrunA17_Chr7g0218891 | 38.272 | 81 | 48 | 1 | 8 | 86 | 5 | 85 | 2.22e-12 | 61.2 |
| Msa1139080 | MtrunA17_Chr3g0077891 | 45.714 | 70 | 37 | 1 | 16 | 84 | 99 | 168 | 1.37e-13 | 63.2 |
| Msa1139080 | MtrunA17_Chr3g0077891 | 42.308 | 78 | 44 | 1 | 10 | 86 | 2 | 79 | 1.90e-11 | 57.8 |
| Msa1139080 | MtrunA17_Chr2g0328701 | 34.314 | 102 | 63 | 2 | 6 | 107 | 19 | 116 | 1.60e-13 | 62.0 |
| Msa1139080 | MtrunA17_Chr3g0077911 | 40.260 | 77 | 45 | 1 | 10 | 85 | 84 | 160 | 1.14e-12 | 60.5 |
| Msa1139080 | MtrunA17_Chr1g0209201 | 49.153 | 59 | 29 | 1 | 20 | 78 | 20 | 77 | 1.15e-12 | 60.1 |
| Msa1139080 | MtrunA17_Chr3g0077941 | 42.308 | 78 | 44 | 1 | 10 | 86 | 2 | 79 | 2.09e-12 | 60.1 |
| Msa1139080 | MtrunA17_Chr3g0077941 | 41.667 | 72 | 41 | 1 | 16 | 86 | 98 | 169 | 4.97e-12 | 58.9 |
| Msa1139080 | MtrunA17_Chr1g0205801 | 42.254 | 71 | 41 | 0 | 16 | 86 | 12 | 82 | 3.19e-12 | 58.2 |
| Msa1139080 | MtrunA17_Chr3g0077811 | 41.026 | 78 | 45 | 1 | 10 | 86 | 7 | 84 | 9.16e-12 | 57.4 |
| Msa1139080 | MtrunA17_Chr3g0077881 | 43.590 | 78 | 43 | 1 | 10 | 86 | 2 | 79 | 1.34e-11 | 58.2 |
| Msa1139080 | MtrunA17_Chr3g0077881 | 41.429 | 70 | 40 | 1 | 16 | 84 | 99 | 168 | 2.41e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1139080 | AT1G24190.3 | 47.706 | 109 | 50 | 3 | 4 | 107 | 4 | 110 | 2.45e-25 | 99.4 |
| Msa1139080 | AT1G24190.2 | 47.706 | 109 | 50 | 3 | 4 | 107 | 4 | 110 | 2.54e-25 | 99.4 |
| Msa1139080 | AT1G24190.1 | 48.182 | 110 | 48 | 3 | 4 | 107 | 4 | 110 | 2.59e-25 | 99.4 |
| Msa1139080 | AT1G70060.2 | 48.214 | 112 | 46 | 3 | 4 | 107 | 4 | 111 | 7.69e-25 | 97.8 |
| Msa1139080 | AT1G70060.1 | 48.214 | 112 | 46 | 3 | 4 | 107 | 4 | 111 | 7.69e-25 | 97.8 |
| Msa1139080 | AT3G01320.2 | 42.991 | 107 | 57 | 1 | 5 | 107 | 46 | 152 | 8.47e-23 | 92.0 |
| Msa1139080 | AT3G01320.1 | 42.991 | 107 | 57 | 1 | 5 | 107 | 46 | 152 | 8.81e-23 | 92.0 |
| Msa1139080 | AT5G15020.2 | 45.098 | 102 | 51 | 2 | 10 | 107 | 46 | 146 | 1.16e-22 | 91.7 |
| Msa1139080 | AT5G15020.1 | 45.098 | 102 | 51 | 2 | 10 | 107 | 46 | 146 | 1.16e-22 | 91.7 |
| Msa1139080 | AT1G59890.1 | 47.368 | 95 | 47 | 2 | 16 | 107 | 45 | 139 | 1.81e-22 | 90.9 |
| Msa1139080 | AT1G59890.2 | 47.368 | 95 | 47 | 2 | 16 | 107 | 45 | 139 | 1.81e-22 | 90.9 |
| Msa1139080 | AT1G59890.3 | 47.368 | 95 | 47 | 2 | 16 | 107 | 45 | 139 | 1.85e-22 | 90.9 |
| Msa1139080 | AT1G59890.4 | 47.368 | 95 | 47 | 2 | 16 | 107 | 45 | 139 | 2.04e-22 | 90.9 |
| Msa1139080 | AT5G15025.1 | 47.561 | 82 | 43 | 0 | 4 | 85 | 35 | 116 | 3.48e-22 | 84.3 |
| Msa1139080 | AT1G10450.2 | 43.158 | 95 | 51 | 2 | 16 | 107 | 33 | 127 | 3.94e-18 | 78.6 |
| Msa1139080 | AT1G10450.1 | 43.158 | 95 | 51 | 2 | 16 | 107 | 33 | 127 | 3.94e-18 | 78.6 |
| Msa1139080 | AT1G10450.3 | 43.158 | 95 | 51 | 2 | 16 | 107 | 84 | 178 | 3.95e-18 | 78.6 |
| Msa1139080 | AT1G70030.3 | 38.889 | 108 | 62 | 1 | 5 | 108 | 11 | 118 | 8.98e-18 | 73.2 |
| Msa1139080 | AT1G70030.2 | 38.889 | 108 | 62 | 1 | 5 | 108 | 11 | 118 | 3.25e-17 | 72.0 |
| Msa1139080 | AT1G70030.1 | 39.048 | 105 | 60 | 1 | 7 | 107 | 2 | 106 | 2.65e-16 | 70.5 |
| Msa1139080 | AT1G24200.1 | 34.906 | 106 | 66 | 2 | 4 | 107 | 3 | 107 | 1.13e-15 | 69.3 |
| Msa1139080 | AT4G12020.4 | 42.857 | 77 | 43 | 1 | 12 | 88 | 304 | 379 | 3.48e-15 | 70.5 |
| Msa1139080 | AT4G12020.2 | 42.857 | 77 | 43 | 1 | 12 | 88 | 304 | 379 | 3.49e-15 | 70.5 |
| Msa1139080 | AT4G12020.3 | 42.857 | 77 | 43 | 1 | 12 | 88 | 304 | 379 | 3.92e-15 | 70.1 |
| Msa1139080 | AT4G12020.5 | 42.857 | 77 | 43 | 1 | 12 | 88 | 237 | 312 | 3.99e-15 | 70.1 |
| Msa1139080 | AT4G12020.10 | 42.857 | 77 | 43 | 1 | 12 | 88 | 304 | 379 | 3.99e-15 | 70.1 |
| Msa1139080 | AT4G12020.7 | 42.857 | 77 | 43 | 1 | 12 | 88 | 304 | 379 | 4.44e-15 | 70.1 |
| Msa1139080 | AT4G12020.1 | 42.857 | 77 | 43 | 1 | 12 | 88 | 304 | 379 | 4.44e-15 | 70.1 |
| Msa1139080 | AT4G12020.9 | 42.857 | 77 | 43 | 1 | 12 | 88 | 304 | 379 | 4.44e-15 | 70.1 |
| Msa1139080 | AT4G12020.6 | 42.857 | 77 | 43 | 1 | 12 | 88 | 304 | 379 | 4.79e-15 | 70.1 |
| Msa1139080 | AT4G12020.8 | 42.857 | 77 | 43 | 1 | 12 | 88 | 304 | 379 | 4.79e-15 | 70.1 |
| Msa1139080 | AT4G12020.11 | 42.857 | 77 | 43 | 1 | 12 | 88 | 304 | 379 | 6.71e-15 | 69.3 |
| Msa1139080 | AT5G15040.1 | 42.857 | 70 | 40 | 0 | 16 | 85 | 3 | 72 | 6.51e-14 | 62.4 |
| Msa1139080 | AT5G15040.3 | 42.857 | 70 | 40 | 0 | 16 | 85 | 3 | 72 | 6.51e-14 | 62.4 |
| Msa1139080 | AT5G15040.2 | 42.857 | 70 | 40 | 0 | 16 | 85 | 3 | 72 | 6.51e-14 | 62.4 |
| Msa1139080 | AT1G24250.1 | 44.595 | 74 | 41 | 0 | 4 | 77 | 108 | 181 | 9.31e-14 | 65.1 |
| Msa1139080 | AT1G24230.1 | 38.356 | 73 | 45 | 0 | 8 | 80 | 78 | 150 | 1.03e-13 | 65.1 |
| Msa1139080 | AT1G24230.1 | 44.776 | 67 | 36 | 1 | 13 | 78 | 11 | 77 | 1.28e-12 | 62.0 |
| Msa1139080 | AT1G23810.1 | 41.892 | 74 | 43 | 0 | 4 | 77 | 97 | 170 | 3.17e-13 | 63.5 |
| Msa1139080 | AT1G27280.1 | 37.179 | 78 | 49 | 0 | 1 | 78 | 66 | 143 | 5.08e-13 | 62.8 |
| Msa1139080 | AT5G35610.1 | 34.783 | 115 | 59 | 1 | 8 | 106 | 2 | 116 | 8.39e-12 | 58.5 |
| Msa1139080 | AT1G27220.1 | 33.333 | 81 | 54 | 0 | 4 | 84 | 2 | 82 | 9.50e-12 | 58.9 |
| Msa1139080 | AT1G27260.1 | 44.615 | 65 | 36 | 0 | 13 | 77 | 90 | 154 | 1.06e-11 | 59.3 |
| Msa1139080 | AT1G27250.1 | 33.766 | 77 | 51 | 0 | 7 | 83 | 12 | 88 | 1.49e-11 | 57.4 |
Find 17 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAATCCATCTGGCAAAA+AGG | 0.287960 | 7_4:-9142577 | None:intergenic |
| TATTCTTTAGTGATCACTTT+TGG | 0.343155 | 7_4:-9142621 | None:intergenic |
| TATTTCATTGAGATACATCT+TGG | 0.410337 | 7_4:-9142308 | None:intergenic |
| ATGTATTTGTAGAATTGATC+TGG | 0.430976 | 7_4:+9142488 | Msa1139080:intron |
| GATGTATCTCAATGAAATAA+AGG | 0.440944 | 7_4:+9142312 | Msa1139080:CDS |
| TAGAATTGATCTGGAGGGTG+TGG | 0.501765 | 7_4:+9142497 | Msa1139080:intron |
| AGTGAGATTTCAAATCCATC+TGG | 0.524903 | 7_4:-9142585 | None:intergenic |
| TTTGGCACTCCCAGAGAACA+AGG | 0.540015 | 7_4:+9142245 | None:intergenic |
| GGGTGTGGTGGCAAGAGTGA+AGG | 0.566355 | 7_4:+9142512 | Msa1139080:CDS |
| GAAATATGTATGCAAGGTGA+AGG | 0.576664 | 7_4:+9142650 | Msa1139080:CDS |
| TGAAAGATTTCGAGAAACGA+AGG | 0.586700 | 7_4:+9142383 | Msa1139080:CDS |
| TGGCACTCCCAGAGAACAAG+GGG | 0.592323 | 7_4:+9142247 | None:intergenic |
| TGCTTTGAAATATGTATGCA+AGG | 0.609709 | 7_4:+9142644 | Msa1139080:CDS |
| AATTGATCTGGAGGGTGTGG+TGG | 0.629593 | 7_4:+9142500 | Msa1139080:CDS |
| TTGGCACTCCCAGAGAACAA+GGG | 0.646561 | 7_4:+9142246 | None:intergenic |
| TATTTGTAGAATTGATCTGG+AGG | 0.689246 | 7_4:+9142491 | Msa1139080:intron |
| ATTTGTAGAATTGATCTGGA+GGG | 0.693473 | 7_4:+9142492 | Msa1139080:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTATTTATTTATAAT+AGG | + | chr7_4:9142415-9142434 | Msa1139080:intron | 0.0% |
| !!! | ATTTTAATTTTAATTATAAT+TGG | + | chr7_4:9143284-9143303 | Msa1139080:intron | 0.0% |
| !! | TTAATTTATTTATTTATAAT+AGG | + | chr7_4:9142415-9142434 | Msa1139080:intron | 0.0% |
| !!! | ATTTTAATTTTAATTATAAT+TGG | + | chr7_4:9143284-9143303 | Msa1139080:intron | 0.0% |
| !!! | TTTAATTTGTAAATTGTAAT+TGG | + | chr7_4:9142448-9142467 | Msa1139080:intron | 10.0% |
| !!! | TAAAGTTAAAAATGAATTTT+TGG | + | chr7_4:9142926-9142945 | Msa1139080:intron | 10.0% |
| !!! | TTTAATTTGTAAATTGTAAT+TGG | + | chr7_4:9142448-9142467 | Msa1139080:intron | 10.0% |
| !!! | TAAAGTTAAAAATGAATTTT+TGG | + | chr7_4:9142926-9142945 | Msa1139080:intron | 10.0% |
| !!! | AAAGCAAAATCATTTTTTTA+GGG | - | chr7_4:9142756-9142775 | None:intergenic | 15.0% |
| !!! | TAAAGCAAAATCATTTTTTT+AGG | - | chr7_4:9142757-9142776 | None:intergenic | 15.0% |
| !!! | CAAAACTTTTCTTTTAATTT+TGG | + | chr7_4:9143254-9143273 | Msa1139080:intron | 15.0% |
| !!! | AAAGCAAAATCATTTTTTTA+GGG | - | chr7_4:9142756-9142775 | None:intergenic | 15.0% |
| !!! | TAAAGCAAAATCATTTTTTT+AGG | - | chr7_4:9142757-9142776 | None:intergenic | 15.0% |
| !!! | CAAAACTTTTCTTTTAATTT+TGG | + | chr7_4:9143254-9143273 | Msa1139080:intron | 15.0% |
| !!! | TTTTACATCGAAAATAAATC+TGG | - | chr7_4:9142714-9142733 | None:intergenic | 20.0% |
| !! | TAAAATGAAAAGTTAATCCA+AGG | - | chr7_4:9142908-9142927 | None:intergenic | 20.0% |
| !!! | GGAACAAAATAATTTTTCTA+AGG | + | chr7_4:9142947-9142966 | Msa1139080:intron | 20.0% |
| !!! | GTTTACTTTAATTTCTCTAA+TGG | + | chr7_4:9143072-9143091 | Msa1139080:intron | 20.0% |
| !! | GTCACATAAGAAAATTAAAT+CGG | - | chr7_4:9143401-9143420 | None:intergenic | 20.0% |
| !!! | TTTTACATCGAAAATAAATC+TGG | - | chr7_4:9142714-9142733 | None:intergenic | 20.0% |
| !! | TAAAATGAAAAGTTAATCCA+AGG | - | chr7_4:9142908-9142927 | None:intergenic | 20.0% |
| !!! | GGAACAAAATAATTTTTCTA+AGG | + | chr7_4:9142947-9142966 | Msa1139080:intron | 20.0% |
| !!! | GTTTACTTTAATTTCTCTAA+TGG | + | chr7_4:9143072-9143091 | Msa1139080:intron | 20.0% |
| !! | GTCACATAAGAAAATTAAAT+CGG | - | chr7_4:9143401-9143420 | None:intergenic | 20.0% |
| ! | TATTTCATTGAGATACATCT+TGG | - | chr7_4:9142311-9142330 | None:intergenic | 25.0% |
| ! | GATGTATCTCAATGAAATAA+AGG | + | chr7_4:9142312-9142331 | Msa1139080:CDS | 25.0% |
| ! | ATGTATTTGTAGAATTGATC+TGG | + | chr7_4:9142488-9142507 | Msa1139080:intron | 25.0% |
| !! | TATTCTTTAGTGATCACTTT+TGG | - | chr7_4:9142624-9142643 | None:intergenic | 25.0% |
| ! | GCAAATTTAAAGAGAGAATA+CGG | + | chr7_4:9142969-9142988 | Msa1139080:intron | 25.0% |
| ! | AAAATTTCTCTGTAAAAGTG+TGG | + | chr7_4:9142992-9143011 | Msa1139080:intron | 25.0% |
| !! | AATTATAATTGGACTTTTGC+AGG | + | chr7_4:9143295-9143314 | Msa1139080:intron | 25.0% |
| !!! | CAGGTTATTTCAATTTTTCA+AGG | + | chr7_4:9143314-9143333 | Msa1139080:intron | 25.0% |
| ! | TATTTCATTGAGATACATCT+TGG | - | chr7_4:9142311-9142330 | None:intergenic | 25.0% |
| ! | GATGTATCTCAATGAAATAA+AGG | + | chr7_4:9142312-9142331 | Msa1139080:CDS | 25.0% |
| ! | ATGTATTTGTAGAATTGATC+TGG | + | chr7_4:9142488-9142507 | Msa1139080:intron | 25.0% |
| !! | TATTCTTTAGTGATCACTTT+TGG | - | chr7_4:9142624-9142643 | None:intergenic | 25.0% |
| ! | GCAAATTTAAAGAGAGAATA+CGG | + | chr7_4:9142969-9142988 | Msa1139080:intron | 25.0% |
| ! | AAAATTTCTCTGTAAAAGTG+TGG | + | chr7_4:9142992-9143011 | Msa1139080:intron | 25.0% |
| !! | AATTATAATTGGACTTTTGC+AGG | + | chr7_4:9143295-9143314 | Msa1139080:intron | 25.0% |
| !!! | CAGGTTATTTCAATTTTTCA+AGG | + | chr7_4:9143314-9143333 | Msa1139080:intron | 25.0% |
| TATTTGTAGAATTGATCTGG+AGG | + | chr7_4:9142491-9142510 | Msa1139080:intron | 30.0% | |
| ATTTGTAGAATTGATCTGGA+GGG | + | chr7_4:9142492-9142511 | Msa1139080:intron | 30.0% | |
| !!! | AGAGTGAAGGAATTTTTTCA+AGG | + | chr7_4:9142525-9142544 | Msa1139080:CDS | 30.0% |
| !!! | GAGTGAAGGAATTTTTTCAA+GGG | + | chr7_4:9142526-9142545 | Msa1139080:CDS | 30.0% |
| !! | TGCTTTGAAATATGTATGCA+AGG | + | chr7_4:9142644-9142663 | Msa1139080:CDS | 30.0% |
| TGTATTGTAGACTTGTATGA+TGG | + | chr7_4:9142677-9142696 | Msa1139080:intron | 30.0% | |
| TTCTTCTTCTTCTTGTGATA+TGG | + | chr7_4:9142797-9142816 | Msa1139080:intron | 30.0% | |
| AAAACGATTCATAAACCTGA+GGG | - | chr7_4:9143130-9143149 | None:intergenic | 30.0% | |
| AAAAACGATTCATAAACCTG+AGG | - | chr7_4:9143131-9143150 | None:intergenic | 30.0% | |
| !! | AAATGACCATAAGAGTGTTA+AGG | + | chr7_4:9143172-9143191 | Msa1139080:intron | 30.0% |
| ATGATGAGTTATTCAGTACT+AGG | + | chr7_4:9143428-9143447 | Msa1139080:intron | 30.0% | |
| TGATGAGTTATTCAGTACTA+GGG | + | chr7_4:9143429-9143448 | Msa1139080:intron | 30.0% | |
| TATTTGTAGAATTGATCTGG+AGG | + | chr7_4:9142491-9142510 | Msa1139080:intron | 30.0% | |
| ATTTGTAGAATTGATCTGGA+GGG | + | chr7_4:9142492-9142511 | Msa1139080:intron | 30.0% | |
| !!! | AGAGTGAAGGAATTTTTTCA+AGG | + | chr7_4:9142525-9142544 | Msa1139080:CDS | 30.0% |
| !!! | GAGTGAAGGAATTTTTTCAA+GGG | + | chr7_4:9142526-9142545 | Msa1139080:CDS | 30.0% |
| !! | TGCTTTGAAATATGTATGCA+AGG | + | chr7_4:9142644-9142663 | Msa1139080:CDS | 30.0% |
| TGTATTGTAGACTTGTATGA+TGG | + | chr7_4:9142677-9142696 | Msa1139080:intron | 30.0% | |
| TTCTTCTTCTTCTTGTGATA+TGG | + | chr7_4:9142797-9142816 | Msa1139080:intron | 30.0% | |
| AAAACGATTCATAAACCTGA+GGG | - | chr7_4:9143130-9143149 | None:intergenic | 30.0% | |
| AAAAACGATTCATAAACCTG+AGG | - | chr7_4:9143131-9143150 | None:intergenic | 30.0% | |
| !! | AAATGACCATAAGAGTGTTA+AGG | + | chr7_4:9143172-9143191 | Msa1139080:intron | 30.0% |
| ATGATGAGTTATTCAGTACT+AGG | + | chr7_4:9143428-9143447 | Msa1139080:intron | 30.0% | |
| TGATGAGTTATTCAGTACTA+GGG | + | chr7_4:9143429-9143448 | Msa1139080:intron | 30.0% | |
| TGAAAGATTTCGAGAAACGA+AGG | + | chr7_4:9142383-9142402 | Msa1139080:CDS | 35.0% | |
| ! | TTTCAAACCTTTTTGCCAGA+TGG | + | chr7_4:9142570-9142589 | Msa1139080:CDS | 35.0% |
| TTCAAATCCATCTGGCAAAA+AGG | - | chr7_4:9142580-9142599 | None:intergenic | 35.0% | |
| AGTGAGATTTCAAATCCATC+TGG | - | chr7_4:9142588-9142607 | None:intergenic | 35.0% | |
| !!! | ATCACTTTTGGTTTCTTTGG+TGG | - | chr7_4:9142612-9142631 | None:intergenic | 35.0% |
| !!! | GTGATCACTTTTGGTTTCTT+TGG | - | chr7_4:9142615-9142634 | None:intergenic | 35.0% |
| GAAATATGTATGCAAGGTGA+AGG | + | chr7_4:9142650-9142669 | Msa1139080:CDS | 35.0% | |
| ! | GCTTTTACACTTAAGTTCCT+TGG | + | chr7_4:9142888-9142907 | Msa1139080:intron | 35.0% |
| TAAGCAAAACACATACCGTT+TGG | - | chr7_4:9143205-9143224 | None:intergenic | 35.0% | |
| TAAACTCATCAACAAGATCC+TGG | - | chr7_4:9143343-9143362 | None:intergenic | 35.0% | |
| AGTTATTCAGTACTAGGGTT+TGG | + | chr7_4:9143434-9143453 | Msa1139080:intron | 35.0% | |
| TGAAAGATTTCGAGAAACGA+AGG | + | chr7_4:9142383-9142402 | Msa1139080:CDS | 35.0% | |
| ! | TTTCAAACCTTTTTGCCAGA+TGG | + | chr7_4:9142570-9142589 | Msa1139080:CDS | 35.0% |
| TTCAAATCCATCTGGCAAAA+AGG | - | chr7_4:9142580-9142599 | None:intergenic | 35.0% | |
| AGTGAGATTTCAAATCCATC+TGG | - | chr7_4:9142588-9142607 | None:intergenic | 35.0% | |
| !!! | ATCACTTTTGGTTTCTTTGG+TGG | - | chr7_4:9142612-9142631 | None:intergenic | 35.0% |
| !!! | GTGATCACTTTTGGTTTCTT+TGG | - | chr7_4:9142615-9142634 | None:intergenic | 35.0% |
| GAAATATGTATGCAAGGTGA+AGG | + | chr7_4:9142650-9142669 | Msa1139080:CDS | 35.0% | |
| ! | GCTTTTACACTTAAGTTCCT+TGG | + | chr7_4:9142888-9142907 | Msa1139080:intron | 35.0% |
| TAAGCAAAACACATACCGTT+TGG | - | chr7_4:9143205-9143224 | None:intergenic | 35.0% | |
| TAAACTCATCAACAAGATCC+TGG | - | chr7_4:9143343-9143362 | None:intergenic | 35.0% | |
| AGTTATTCAGTACTAGGGTT+TGG | + | chr7_4:9143434-9143453 | Msa1139080:intron | 35.0% | |
| !!! | TTCAATTTTTCAAGGCCACC+AGG | + | chr7_4:9143322-9143341 | Msa1139080:intron | 40.0% |
| TAGATCACGAGCTGCATTAT+GGG | - | chr7_4:9143376-9143395 | None:intergenic | 40.0% | |
| ATAGATCACGAGCTGCATTA+TGG | - | chr7_4:9143377-9143396 | None:intergenic | 40.0% | |
| !!! | TTCAATTTTTCAAGGCCACC+AGG | + | chr7_4:9143322-9143341 | Msa1139080:intron | 40.0% |
| TAGATCACGAGCTGCATTAT+GGG | - | chr7_4:9143376-9143395 | None:intergenic | 40.0% | |
| ATAGATCACGAGCTGCATTA+TGG | - | chr7_4:9143377-9143396 | None:intergenic | 40.0% | |
| TAGAATTGATCTGGAGGGTG+TGG | + | chr7_4:9142497-9142516 | Msa1139080:intron | 45.0% | |
| GAAATCGAGTCTGCATGCAA+AGG | - | chr7_4:9143100-9143119 | None:intergenic | 45.0% | |
| GGAGCTCCTTAACACTCTTA+TGG | - | chr7_4:9143181-9143200 | None:intergenic | 45.0% | |
| TGTTAAGGAGCTCCACCAAA+CGG | + | chr7_4:9143187-9143206 | Msa1139080:intron | 45.0% | |
| GCAAAACACATACCGTTTGG+TGG | - | chr7_4:9143202-9143221 | None:intergenic | 45.0% | |
| ACTCATCAACAAGATCCTGG+TGG | - | chr7_4:9143340-9143359 | None:intergenic | 45.0% | |
| TAGAATTGATCTGGAGGGTG+TGG | + | chr7_4:9142497-9142516 | Msa1139080:intron | 45.0% | |
| GAAATCGAGTCTGCATGCAA+AGG | - | chr7_4:9143100-9143119 | None:intergenic | 45.0% | |
| GGAGCTCCTTAACACTCTTA+TGG | - | chr7_4:9143181-9143200 | None:intergenic | 45.0% | |
| TGTTAAGGAGCTCCACCAAA+CGG | + | chr7_4:9143187-9143206 | Msa1139080:intron | 45.0% | |
| GCAAAACACATACCGTTTGG+TGG | - | chr7_4:9143202-9143221 | None:intergenic | 45.0% | |
| ACTCATCAACAAGATCCTGG+TGG | - | chr7_4:9143340-9143359 | None:intergenic | 45.0% | |
| ! | AATTGATCTGGAGGGTGTGG+TGG | + | chr7_4:9142500-9142519 | Msa1139080:CDS | 50.0% |
| TCGATTTCGACGTAACCCTC+AGG | + | chr7_4:9143112-9143131 | Msa1139080:intron | 50.0% | |
| ! | AATTGATCTGGAGGGTGTGG+TGG | + | chr7_4:9142500-9142519 | Msa1139080:CDS | 50.0% |
| TCGATTTCGACGTAACCCTC+AGG | + | chr7_4:9143112-9143131 | Msa1139080:intron | 50.0% | |
| GGGTGTGGTGGCAAGAGTGA+AGG | + | chr7_4:9142512-9142531 | Msa1139080:CDS | 60.0% | |
| GGGTGTGGTGGCAAGAGTGA+AGG | + | chr7_4:9142512-9142531 | Msa1139080:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 9142259 | 9143509 | 9142259 | ID=Msa1139080;Name=Msa1139080 |
| chr7_4 | mRNA | 9142259 | 9143509 | 9142259 | ID=Msa1139080-mRNA-1;Parent=Msa1139080;Name=Msa1139080-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|0.66|0.5|0.33|3|0|109 |
| chr7_4 | exon | 9142259 | 9142404 | 9142259 | ID=Msa1139080-mRNA-1:exon:2385;Parent=Msa1139080-mRNA-1 |
| chr7_4 | exon | 9142500 | 9142677 | 9142500 | ID=Msa1139080-mRNA-1:exon:2386;Parent=Msa1139080-mRNA-1 |
| chr7_4 | exon | 9143504 | 9143509 | 9143504 | ID=Msa1139080-mRNA-1:exon:2387;Parent=Msa1139080-mRNA-1 |
| chr7_4 | CDS | 9142259 | 9142404 | 9142259 | ID=Msa1139080-mRNA-1:cds;Parent=Msa1139080-mRNA-1 |
| chr7_4 | CDS | 9142500 | 9142677 | 9142500 | ID=Msa1139080-mRNA-1:cds;Parent=Msa1139080-mRNA-1 |
| chr7_4 | CDS | 9143504 | 9143509 | 9143504 | ID=Msa1139080-mRNA-1:cds;Parent=Msa1139080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
