AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1139090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1139090 MtrunA17_Chr7g0218891 82.642 265 46 0 1 265 1 265 1.30e-151 426
Msa1139090 MtrunA17_Chr4g0075861 34.188 234 145 4 26 259 20 244 6.04e-32 122
Msa1139090 MtrunA17_Chr4g0075861 35.673 171 101 5 5 173 81 244 1.58e-18 85.1
Msa1139090 MtrunA17_Chr4g0075971 33.761 234 146 4 26 259 20 244 2.05e-29 117
Msa1139090 MtrunA17_Chr4g0075971 36.257 171 100 5 5 173 81 244 1.08e-17 83.6
Msa1139090 MtrunA17_Chr3g0077891 39.521 167 93 3 99 259 8 172 3.37e-27 104
Msa1139090 MtrunA17_Chr3g0077891 37.952 166 95 3 9 168 4 167 4.98e-24 96.3
Msa1139090 MtrunA17_Chr1g0206771 43.796 137 70 2 118 254 33 162 1.50e-25 100
Msa1139090 MtrunA17_Chr1g0206771 37.821 156 86 4 14 168 17 162 8.66e-20 85.1
Msa1139090 MtrunA17_Chr3g0077941 37.952 166 96 3 99 259 8 171 1.14e-23 95.5
Msa1139090 MtrunA17_Chr3g0077941 36.471 170 101 5 9 173 4 171 5.42e-20 85.5
Msa1139090 MtrunA17_Chr3g0077881 38.554 166 93 4 99 258 8 170 1.19e-23 95.5
Msa1139090 MtrunA17_Chr3g0077881 35.366 164 98 3 11 168 6 167 2.82e-19 83.6
Msa1139090 MtrunA17_Chr3g0077881 45.000 80 43 1 186 265 9 87 2.44e-13 67.4
Msa1139090 MtrunA17_Chr8g0364231 41.304 138 77 3 115 250 56 191 5.50e-23 99.8
Msa1139090 MtrunA17_Chr8g0364231 37.681 138 82 3 29 164 56 191 6.92e-18 84.3
Msa1139090 MtrunA17_Chr8g0364231 31.548 168 63 2 171 286 25 192 7.58e-16 78.6
Msa1139090 MtrunA17_Chr3g0077861 38.411 151 89 3 105 252 7 156 5.65e-23 93.2
Msa1139090 MtrunA17_Chr3g0077861 38.849 139 77 3 32 166 22 156 3.55e-19 83.2
Msa1139090 MtrunA17_Chr3g0077911 37.419 155 93 3 101 252 3 156 1.05e-22 92.4
Msa1139090 MtrunA17_Chr3g0077911 38.971 136 81 2 32 166 22 156 4.16e-21 88.2
Msa1139090 MtrunA17_Chr1g0205821 34.356 163 101 3 99 259 13 171 2.23e-22 92.0
Msa1139090 MtrunA17_Chr1g0205821 30.864 162 106 3 11 170 11 168 4.69e-17 77.4
Msa1139090 MtrunA17_Chr1g0205831 34.375 160 84 4 102 259 5 145 1.28e-20 87.4
Msa1139090 MtrunA17_Chr1g0205831 34.161 161 89 3 16 176 5 148 1.45e-19 84.3
Msa1139090 MtrunA17_Chr5g0415031 36.620 142 80 3 115 251 57 193 4.44e-19 88.2
Msa1139090 MtrunA17_Chr5g0415031 34.752 141 84 3 29 165 57 193 1.90e-15 77.0
Msa1139090 MtrunA17_Chr5g0415031 30.247 162 59 2 201 308 57 218 4.01e-14 73.2
Msa1139090 MtrunA17_Chr6g0452021 32.222 180 117 3 99 278 43 217 5.51e-19 87.0
Msa1139090 MtrunA17_Chr6g0452021 24.837 306 185 8 14 284 44 339 4.73e-14 72.4
Msa1139090 MtrunA17_Chr6g0452001 34.177 158 98 3 95 250 59 212 4.72e-18 85.1
Msa1139090 MtrunA17_Chr6g0452001 31.373 153 99 3 14 164 64 212 1.56e-13 71.2
Msa1139090 MtrunA17_Chr6g0452001 29.878 164 62 2 186 298 64 225 5.07e-12 66.6
Msa1139090 MtrunA17_Chr1g0206781 31.579 133 63 2 91 223 3 107 1.53e-13 66.2
Msa1139090 MtrunA17_Chr1g0206781 37.209 86 52 1 177 262 3 86 1.24e-11 60.8
Msa1139090 MtrunA17_Chr1g0205811 43.750 80 43 1 183 262 12 89 5.14e-13 65.1
Msa1139090 MtrunA17_Chr1g0205811 41.489 94 49 2 103 192 18 109 8.80e-13 64.3
Msa1139090 MtrunA17_Chr1g0205801 45.455 77 40 1 186 262 13 87 9.16e-13 63.9
Msa1139090 MtrunA17_Chr1g0205801 44.156 77 41 1 100 176 13 87 1.01e-12 63.9
Msa1139090 MtrunA17_Chr1g0205801 44.444 81 42 2 11 90 10 88 3.55e-11 59.7
Msa1139090 MtrunA17_Chr1g0205861 38.202 89 51 2 95 183 12 96 4.70e-11 59.3
Msa1139090 MtrunA17_Chr1g0205861 42.857 77 42 1 186 262 17 91 6.08e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1139090 AT5G15020.2 38.365 159 94 3 93 251 46 200 3.85e-21 94.7
Msa1139090 AT5G15020.2 35.294 153 95 3 14 166 53 201 5.40e-16 79.3
Msa1139090 AT5G15020.1 38.365 159 94 3 93 251 46 200 4.11e-21 94.4
Msa1139090 AT5G15020.1 35.294 153 95 3 14 166 53 201 5.71e-16 79.3
Msa1139090 AT1G24190.2 37.654 162 95 5 91 250 6 163 8.08e-21 93.6
Msa1139090 AT1G24190.2 34.104 173 107 6 3 172 4 172 6.85e-17 82.0
Msa1139090 AT1G24190.2 30.714 140 46 1 201 289 28 167 4.11e-11 64.3
Msa1139090 AT1G24190.1 37.654 162 95 5 91 250 6 163 8.24e-21 93.6
Msa1139090 AT1G24190.1 34.104 173 107 6 3 172 4 172 7.18e-17 82.0
Msa1139090 AT1G24190.1 30.714 140 46 1 201 289 28 167 4.38e-11 64.3
Msa1139090 AT1G24190.3 37.654 162 95 5 91 250 6 163 8.98e-21 93.6
Msa1139090 AT1G24190.3 34.104 173 107 6 3 172 4 172 7.82e-17 81.6
Msa1139090 AT1G24190.3 30.714 140 46 1 201 289 28 167 4.27e-11 64.3
Msa1139090 AT1G70030.1 35.032 157 92 4 96 249 8 157 3.62e-20 85.9
Msa1139090 AT1G70030.1 35.099 151 92 3 14 163 12 157 2.52e-18 80.9
Msa1139090 AT1G70060.2 34.756 164 100 4 90 250 5 164 3.84e-19 88.6
Msa1139090 AT1G70060.2 32.727 165 104 4 3 164 4 164 3.36e-16 79.7
Msa1139090 AT1G70060.1 34.756 164 100 4 90 250 5 164 3.84e-19 88.6
Msa1139090 AT1G70060.1 32.727 165 104 4 3 164 4 164 3.36e-16 79.7
Msa1139090 AT3G01320.1 29.741 232 151 5 47 274 2 225 1.91e-18 86.7
Msa1139090 AT3G01320.1 29.464 224 145 6 14 232 58 273 1.26e-16 81.3
Msa1139090 AT3G01320.2 29.741 232 151 5 47 274 2 225 2.00e-18 86.7
Msa1139090 AT3G01320.2 29.464 224 145 6 14 232 58 273 1.17e-16 81.3
Msa1139090 AT1G59890.4 33.824 136 88 1 115 250 59 192 1.38e-17 84.0
Msa1139090 AT1G59890.4 32.836 134 88 1 31 164 61 192 6.75e-15 75.9
Msa1139090 AT1G59890.1 33.824 136 88 1 115 250 59 192 1.53e-17 84.0
Msa1139090 AT1G59890.1 32.836 134 88 1 31 164 61 192 7.76e-15 75.9
Msa1139090 AT1G59890.2 33.824 136 88 1 115 250 59 192 1.60e-17 84.0
Msa1139090 AT1G59890.2 32.836 134 88 1 31 164 61 192 8.21e-15 75.5
Msa1139090 AT1G59890.3 33.824 136 88 1 115 250 59 192 1.69e-17 83.6
Msa1139090 AT1G59890.3 32.836 134 88 1 31 164 61 192 8.50e-15 75.5
Msa1139090 AT1G10450.3 33.813 139 90 1 115 253 98 234 1.14e-16 81.3
Msa1139090 AT1G10450.3 31.410 156 104 2 31 186 100 252 1.03e-14 75.5
Msa1139090 AT1G10450.2 33.813 139 90 1 115 253 47 183 1.61e-16 80.9
Msa1139090 AT1G10450.2 31.410 156 104 2 31 186 49 201 1.34e-14 75.1
Msa1139090 AT1G10450.1 33.813 139 90 1 115 253 47 183 1.61e-16 80.9
Msa1139090 AT1G10450.1 31.410 156 104 2 31 186 49 201 1.34e-14 75.1
Msa1139090 AT1G24230.1 24.590 244 155 6 3 241 4 223 1.97e-16 77.8
Msa1139090 AT1G24230.1 27.545 167 105 4 95 261 10 160 8.62e-13 67.4
Msa1139090 AT1G24200.1 31.788 151 98 4 99 249 14 159 6.46e-14 69.7
Msa1139090 AT1G70030.2 33.913 115 57 2 186 283 23 135 5.13e-12 63.2
Msa1139090 AT1G70030.2 28.662 157 70 4 96 249 19 136 3.28e-11 60.8
Msa1139090 AT1G70030.3 35.577 104 60 3 95 195 18 117 8.28e-11 59.3

Find 58 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACTTTCTGAATGTCTTTA+AGG 0.070134 7_4:+9158286 Msa1139090:CDS
ATACCCAGCATTGGAAGATT+TGG 0.296029 7_4:+9159472 Msa1139090:CDS
ATAGATTTATTCAAGTTAAC+AGG 0.306329 7_4:+9157885 Msa1139090:CDS
AACATCATTGACAAATTCTT+TGG 0.313079 7_4:-9158578 None:intergenic
TAGAATTGATGATGCAAATC+TGG 0.365588 7_4:+9158809 Msa1139090:intron
AGAACATTGTGACGTCAAAA+AGG 0.380889 7_4:+9157835 Msa1139090:CDS
GTTACTGCTCAAAACTATAT+AGG 0.397165 7_4:+9159440 Msa1139090:CDS
AATCTTCCAATGCTGGGTAT+TGG 0.400708 7_4:-9159469 None:intergenic
ATCTGAGGAGGAACAATCTC+TGG 0.416325 7_4:+9158178 Msa1139090:CDS
AGTAGTTCAATCTTGATATA+AGG 0.418112 7_4:-9158480 None:intergenic
TAACTTTCTGAATGTGTTGA+AGG 0.435901 7_4:+9158642 Msa1139090:CDS
CCTTCCAAATCTTCCAATGC+TGG 0.452142 7_4:-9159476 None:intergenic
AAGGGATTATTTGAAGGTCA+TGG 0.456386 7_4:+9158098 Msa1139090:CDS
GAATCTTGGTGAATTATTGA+AGG 0.480427 7_4:+9158435 Msa1139090:CDS
AGGATTGACGCTGCGAATCT+TGG 0.486810 7_4:+9158421 Msa1139090:intron
AGCTTGATTTCAAATCCATC+AGG 0.489510 7_4:-9158152 None:intergenic
AAATCTCAGTAAATTCTTGA+AGG 0.490603 7_4:+9158079 Msa1139090:CDS
TTCTTGAAGGGATTATTTGA+AGG 0.491097 7_4:+9158092 Msa1139090:CDS
AGCTTGATTTCATATCCATC+AGG 0.493606 7_4:-9158897 None:intergenic
CAGCTTGATTTCAAATCCAT+CGG 0.495338 7_4:-9158509 None:intergenic
CAAGAAGGTCGGGATGTCCT+TGG 0.495696 7_4:-9159376 None:intergenic
AACTTCATTGACGAACTCCT+TGG 0.507296 7_4:-9157858 None:intergenic
AGCTTGATTTCAAATCCATC+GGG 0.513708 7_4:-9158508 None:intergenic
TTATTGAAGGGATTATTTCA+AGG 0.513778 7_4:+9158448 Msa1139090:CDS
ATAATGAAGAAAATATTTGA+AGG 0.513952 7_4:+9158837 Msa1139090:CDS
AATCTTGGTGAATTATTGAA+GGG 0.514858 7_4:+9158436 Msa1139090:CDS
TTGAACTACTTCATGCCTGA+TGG 0.515459 7_4:+9158137 Msa1139090:CDS
AATCTCAGTAAATTCTTGAA+GGG 0.520509 7_4:+9158080 Msa1139090:CDS
AATCAAGCTGCCATCGGAGG+AGG 0.529195 7_4:+9158522 Msa1139090:CDS
TGAAATCAAGCTTCCATTGG+AGG 0.531076 7_4:+9158908 Msa1139090:CDS
GTAAACTCGTCAAGAAGGTC+GGG 0.535678 7_4:-9159386 None:intergenic
CTTCCAAATCTTCCAATGCT+GGG 0.554587 7_4:-9159475 None:intergenic
TTAAACTACTTCCTACCTGA+TGG 0.558050 7_4:+9158882 Msa1139090:CDS
AGTAAACTCGTCAAGAAGGT+CGG 0.562519 7_4:-9159387 None:intergenic
AGAGATTCTTCCTCCTCCGA+TGG 0.570247 7_4:-9158532 None:intergenic
TGAAATTGTTCCTCCTCCAA+TGG 0.571267 7_4:-9158921 None:intergenic
AGTGAGTAAACTCGTCAAGA+AGG 0.575251 7_4:-9159391 None:intergenic
ATATGAAATCAAGCTTCCAT+TGG 0.577817 7_4:+9158905 Msa1139090:CDS
TTGAACTACTTCATGCCCGA+TGG 0.579628 7_4:+9158493 Msa1139090:CDS
ATTTATTCAAGTTAATCAGA+GGG 0.582516 7_4:+9158609 Msa1139090:CDS
TGATGCATTACAAGAAACAA+AGG 0.583155 7_4:+9157939 Msa1139090:CDS
GATTTATTCAAGTTAATCAG+AGG 0.587296 7_4:+9158252 Msa1139090:CDS
GATTTATTCAAGTTAATCAG+AGG 0.587296 7_4:+9158608 Msa1139090:CDS
TGAAATCAAGCTGCCATCGG+AGG 0.588675 7_4:+9158519 Msa1139090:CDS
TGAAATCAAGCTTCTATCTG+AGG 0.589635 7_4:+9158163 Msa1139090:CDS
AGGTCTCCAATACCCAGCAT+TGG 0.589809 7_4:+9159463 Msa1139090:CDS
ATTTATTCAAGTTAATCAGA+GGG 0.591574 7_4:+9158253 Msa1139090:CDS
GATTTATTCAAGTTAACAGG+AGG 0.594070 7_4:+9157888 Msa1139090:CDS
TGAAGGATTACAAGAGACAA+AGG 0.594478 7_4:+9158659 Msa1139090:CDS
AATCAAGCTTCCATTGGAGG+AGG 0.611644 7_4:+9158911 Msa1139090:CDS
GGGCAACCCGTGATAATGGA+AGG 0.616033 7_4:+9157803 None:intergenic
ATTTATTCAAGTTAACAGGA+GGG 0.617938 7_4:+9157889 Msa1139090:CDS
ACTGCTCAAAACTATATAGG+AGG 0.619447 7_4:+9159443 Msa1139090:CDS
CCAGCATTGGAAGATTTGGA+AGG 0.623963 7_4:+9159476 Msa1139090:CDS
ATTTGAAATCAAGCTGCCAT+CGG 0.624832 7_4:+9158516 Msa1139090:CDS
TGATTTCATATCCATCAGGT+AGG 0.626891 7_4:-9158893 None:intergenic
AATCAAGCTTCTATCTGAGG+AGG 0.631110 7_4:+9158166 Msa1139090:CDS
TTAAGGATTACAAAACACAA+AGG 0.659829 7_4:+9158303 Msa1139090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATAAATAAATTTAA+AGG - chr7_4:9159146-9159165 None:intergenic 0.0%
!! AAATTAATAAATAAATTTAA+AGG - chr7_4:9159146-9159165 None:intergenic 0.0%
!! ACAATATAATAAAAAAATAG+TGG - chr7_4:9158344-9158363 None:intergenic 10.0%
!!! TTTTTTATTATATTGTGAAA+TGG + chr7_4:9158348-9158367 Msa1139090:intron 10.0%
!!! AATTTATTTTTGAATCTAAT+TGG + chr7_4:9159050-9159069 Msa1139090:intron 10.0%
!! ACAATATAATAAAAAAATAG+TGG - chr7_4:9158344-9158363 None:intergenic 10.0%
!!! TTTTTTATTATATTGTGAAA+TGG + chr7_4:9158348-9158367 Msa1139090:intron 10.0%
!!! AATTTATTTTTGAATCTAAT+TGG + chr7_4:9159050-9159069 Msa1139090:intron 10.0%
!! CATTACAATAAAAAAAATAG+TGG - chr7_4:9157980-9157999 None:intergenic 15.0%
!! GCAATATAATAAAAAAATAG+TGG - chr7_4:9158700-9158719 None:intergenic 15.0%
!!! TTTTTTATTATATTGCGAAA+TGG + chr7_4:9158704-9158723 Msa1139090:intron 15.0%
!! ATAATGAAGAAAATATTTGA+AGG + chr7_4:9158837-9158856 Msa1139090:CDS 15.0%
!! AATTGAACAATAACAATATT+TGG - chr7_4:9159181-9159200 None:intergenic 15.0%
!! CATTACAATAAAAAAAATAG+TGG - chr7_4:9157980-9157999 None:intergenic 15.0%
!! GCAATATAATAAAAAAATAG+TGG - chr7_4:9158700-9158719 None:intergenic 15.0%
!!! TTTTTTATTATATTGCGAAA+TGG + chr7_4:9158704-9158723 Msa1139090:intron 15.0%
!! ATAATGAAGAAAATATTTGA+AGG + chr7_4:9158837-9158856 Msa1139090:CDS 15.0%
!! AATTGAACAATAACAATATT+TGG - chr7_4:9159181-9159200 None:intergenic 15.0%
!!! ATAGATTTATTCAAGTTAAC+AGG + chr7_4:9157885-9157904 Msa1139090:CDS 20.0%
!!! AACTAATTTATCTATCCTTT+TGG + chr7_4:9158032-9158051 Msa1139090:intron 20.0%
!!! ATTTATTCAAGTTAATCAGA+GGG + chr7_4:9158253-9158272 Msa1139090:CDS 20.0%
!!! ATTTATTCAAGTTAATCAGA+GGG + chr7_4:9158253-9158272 Msa1139090:CDS 20.0%
!!! TGGATTCTATTAATTTTTGT+TGG + chr7_4:9158750-9158769 Msa1139090:intron 20.0%
!!! TATTAATTTGTCTATCCATT+TGG + chr7_4:9158777-9158796 Msa1139090:intron 20.0%
!! ATTCTACAAAATATACCAAA+TGG - chr7_4:9158795-9158814 None:intergenic 20.0%
!!! ATAGATTTATTCAAGTTAAC+AGG + chr7_4:9157885-9157904 Msa1139090:CDS 20.0%
!!! AACTAATTTATCTATCCTTT+TGG + chr7_4:9158032-9158051 Msa1139090:intron 20.0%
!!! ATTTATTCAAGTTAATCAGA+GGG + chr7_4:9158253-9158272 Msa1139090:CDS 20.0%
!!! ATTTATTCAAGTTAATCAGA+GGG + chr7_4:9158253-9158272 Msa1139090:CDS 20.0%
!!! TGGATTCTATTAATTTTTGT+TGG + chr7_4:9158750-9158769 Msa1139090:intron 20.0%
!!! TATTAATTTGTCTATCCATT+TGG + chr7_4:9158777-9158796 Msa1139090:intron 20.0%
!! ATTCTACAAAATATACCAAA+TGG - chr7_4:9158795-9158814 None:intergenic 20.0%
!! ATTTATTCAAGTTAACAGGA+GGG + chr7_4:9157889-9157908 Msa1139090:CDS 25.0%
!! ATCCTTTTGGTATATTTTGT+AGG + chr7_4:9158045-9158064 Msa1139090:intron 25.0%
! ATCCTACAAAATATACCAAA+AGG - chr7_4:9158050-9158069 None:intergenic 25.0%
! AAATCTCAGTAAATTCTTGA+AGG + chr7_4:9158079-9158098 Msa1139090:CDS 25.0%
! AATCTCAGTAAATTCTTGAA+GGG + chr7_4:9158080-9158099 Msa1139090:CDS 25.0%
!! GATTTATTCAAGTTAATCAG+AGG + chr7_4:9158252-9158271 Msa1139090:CDS 25.0%
! TAACTTTCTGAATGTCTTTA+AGG + chr7_4:9158286-9158305 Msa1139090:CDS 25.0%
! TTAAGGATTACAAAACACAA+AGG + chr7_4:9158303-9158322 Msa1139090:CDS 25.0%
! AATCTTGGTGAATTATTGAA+GGG + chr7_4:9158436-9158455 Msa1139090:CDS 25.0%
! TTATTGAAGGGATTATTTCA+AGG + chr7_4:9158448-9158467 Msa1139090:CDS 25.0%
! AGTAGTTCAATCTTGATATA+AGG - chr7_4:9158127-9158146 None:intergenic 25.0%
! AACATCATTGACAAATTCTT+TGG - chr7_4:9158225-9158244 None:intergenic 25.0%
!! GATTTATTCAAGTTAATCAG+AGG + chr7_4:9158252-9158271 Msa1139090:CDS 25.0%
! CAAGTTCTTGAAAAAGATAA+AGG + chr7_4:9158964-9158983 Msa1139090:intron 25.0%
! TTCATGTATGATCAATTTGA+AGG + chr7_4:9159078-9159097 Msa1139090:intron 25.0%
! GAAGATAGGTAAAAATATTG+AGG - chr7_4:9159237-9159256 None:intergenic 25.0%
!! ATTTATTCAAGTTAACAGGA+GGG + chr7_4:9157889-9157908 Msa1139090:CDS 25.0%
!! ATCCTTTTGGTATATTTTGT+AGG + chr7_4:9158045-9158064 Msa1139090:intron 25.0%
! ATCCTACAAAATATACCAAA+AGG - chr7_4:9158050-9158069 None:intergenic 25.0%
! AAATCTCAGTAAATTCTTGA+AGG + chr7_4:9158079-9158098 Msa1139090:CDS 25.0%
! AATCTCAGTAAATTCTTGAA+GGG + chr7_4:9158080-9158099 Msa1139090:CDS 25.0%
!! GATTTATTCAAGTTAATCAG+AGG + chr7_4:9158252-9158271 Msa1139090:CDS 25.0%
! TAACTTTCTGAATGTCTTTA+AGG + chr7_4:9158286-9158305 Msa1139090:CDS 25.0%
! TTAAGGATTACAAAACACAA+AGG + chr7_4:9158303-9158322 Msa1139090:CDS 25.0%
! AATCTTGGTGAATTATTGAA+GGG + chr7_4:9158436-9158455 Msa1139090:CDS 25.0%
! TTATTGAAGGGATTATTTCA+AGG + chr7_4:9158448-9158467 Msa1139090:CDS 25.0%
! AGTAGTTCAATCTTGATATA+AGG - chr7_4:9158127-9158146 None:intergenic 25.0%
! AACATCATTGACAAATTCTT+TGG - chr7_4:9158225-9158244 None:intergenic 25.0%
!! GATTTATTCAAGTTAATCAG+AGG + chr7_4:9158252-9158271 Msa1139090:CDS 25.0%
! CAAGTTCTTGAAAAAGATAA+AGG + chr7_4:9158964-9158983 Msa1139090:intron 25.0%
! TTCATGTATGATCAATTTGA+AGG + chr7_4:9159078-9159097 Msa1139090:intron 25.0%
! GAAGATAGGTAAAAATATTG+AGG - chr7_4:9159237-9159256 None:intergenic 25.0%
! GATTTATTCAAGTTAACAGG+AGG + chr7_4:9157888-9157907 Msa1139090:CDS 30.0%
TGATGCATTACAAGAAACAA+AGG + chr7_4:9157939-9157958 Msa1139090:CDS 30.0%
TTCTTGAAGGGATTATTTGA+AGG + chr7_4:9158092-9158111 Msa1139090:CDS 30.0%
! GACAAATTCTTTCGCATTTT+TGG - chr7_4:9158216-9158235 None:intergenic 30.0%
GAATCTTGGTGAATTATTGA+AGG + chr7_4:9158435-9158454 Msa1139090:CDS 30.0%
TAACTTTCTGAATGTGTTGA+AGG + chr7_4:9158642-9158661 Msa1139090:CDS 30.0%
!! TAGAATTGATGATGCAAATC+TGG + chr7_4:9158809-9158828 Msa1139090:intron 30.0%
ATATGAAATCAAGCTTCCAT+TGG + chr7_4:9158905-9158924 Msa1139090:CDS 30.0%
GGAACAATTTCACGTTAAAT+TGG + chr7_4:9158932-9158951 Msa1139090:intron 30.0%
!!! ATGACTGATTTTGAGTTTGA+TGG + chr7_4:9158988-9159007 Msa1139090:intron 30.0%
ATTACAAGAACATCATTCAG+AGG - chr7_4:9159117-9159136 None:intergenic 30.0%
AAATTACAGTGCTAGAAGAT+AGG - chr7_4:9159251-9159270 None:intergenic 30.0%
AGCATCAACATGAATATGTT+TGG - chr7_4:9159315-9159334 None:intergenic 30.0%
TGTCATAATTGAACTTCTTC+AGG + chr7_4:9159340-9159359 Msa1139090:intron 30.0%
!! GAGATGAAATAGTGTTTTGA+AGG - chr7_4:9159418-9159437 None:intergenic 30.0%
GTTACTGCTCAAAACTATAT+AGG + chr7_4:9159440-9159459 Msa1139090:CDS 30.0%
! GATTTATTCAAGTTAACAGG+AGG + chr7_4:9157888-9157907 Msa1139090:CDS 30.0%
TGATGCATTACAAGAAACAA+AGG + chr7_4:9157939-9157958 Msa1139090:CDS 30.0%
TTCTTGAAGGGATTATTTGA+AGG + chr7_4:9158092-9158111 Msa1139090:CDS 30.0%
! GACAAATTCTTTCGCATTTT+TGG - chr7_4:9158216-9158235 None:intergenic 30.0%
GAATCTTGGTGAATTATTGA+AGG + chr7_4:9158435-9158454 Msa1139090:CDS 30.0%
TAACTTTCTGAATGTGTTGA+AGG + chr7_4:9158642-9158661 Msa1139090:CDS 30.0%
!! TAGAATTGATGATGCAAATC+TGG + chr7_4:9158809-9158828 Msa1139090:intron 30.0%
ATATGAAATCAAGCTTCCAT+TGG + chr7_4:9158905-9158924 Msa1139090:CDS 30.0%
GGAACAATTTCACGTTAAAT+TGG + chr7_4:9158932-9158951 Msa1139090:intron 30.0%
!!! ATGACTGATTTTGAGTTTGA+TGG + chr7_4:9158988-9159007 Msa1139090:intron 30.0%
ATTACAAGAACATCATTCAG+AGG - chr7_4:9159117-9159136 None:intergenic 30.0%
AAATTACAGTGCTAGAAGAT+AGG - chr7_4:9159251-9159270 None:intergenic 30.0%
AGCATCAACATGAATATGTT+TGG - chr7_4:9159315-9159334 None:intergenic 30.0%
TGTCATAATTGAACTTCTTC+AGG + chr7_4:9159340-9159359 Msa1139090:intron 30.0%
!! GAGATGAAATAGTGTTTTGA+AGG - chr7_4:9159418-9159437 None:intergenic 30.0%
GTTACTGCTCAAAACTATAT+AGG + chr7_4:9159440-9159459 Msa1139090:CDS 30.0%
AGAACATTGTGACGTCAAAA+AGG + chr7_4:9157835-9157854 Msa1139090:CDS 35.0%
AAGGGATTATTTGAAGGTCA+TGG + chr7_4:9158098-9158117 Msa1139090:CDS 35.0%
AGCTTGATTTCAAATCCATC+AGG - chr7_4:9158155-9158174 None:intergenic 35.0%
TGAAATCAAGCTTCTATCTG+AGG + chr7_4:9158163-9158182 Msa1139090:CDS 35.0%
AGCTTGATTTCAAATCCATC+GGG - chr7_4:9158155-9158174 None:intergenic 35.0%
CAGCTTGATTTCAAATCCAT+CGG - chr7_4:9158512-9158531 None:intergenic 35.0%
! ATTTGAAATCAAGCTGCCAT+CGG + chr7_4:9158516-9158535 Msa1139090:CDS 35.0%
TGAAGGATTACAAGAGACAA+AGG + chr7_4:9158659-9158678 Msa1139090:CDS 35.0%
TTAAACTACTTCCTACCTGA+TGG + chr7_4:9158882-9158901 Msa1139090:CDS 35.0%
TGATTTCATATCCATCAGGT+AGG - chr7_4:9158896-9158915 None:intergenic 35.0%
AGCTTGATTTCATATCCATC+AGG - chr7_4:9158900-9158919 None:intergenic 35.0%
!! CGATTCGTTTTTAACGTACA+AGG + chr7_4:9159024-9159043 Msa1139090:intron 35.0%
ACTGCTCAAAACTATATAGG+AGG + chr7_4:9159443-9159462 Msa1139090:CDS 35.0%
AGAACATTGTGACGTCAAAA+AGG + chr7_4:9157835-9157854 Msa1139090:CDS 35.0%
AAGGGATTATTTGAAGGTCA+TGG + chr7_4:9158098-9158117 Msa1139090:CDS 35.0%
AGCTTGATTTCAAATCCATC+AGG - chr7_4:9158155-9158174 None:intergenic 35.0%
TGAAATCAAGCTTCTATCTG+AGG + chr7_4:9158163-9158182 Msa1139090:CDS 35.0%
AGCTTGATTTCAAATCCATC+GGG - chr7_4:9158155-9158174 None:intergenic 35.0%
CAGCTTGATTTCAAATCCAT+CGG - chr7_4:9158512-9158531 None:intergenic 35.0%
! ATTTGAAATCAAGCTGCCAT+CGG + chr7_4:9158516-9158535 Msa1139090:CDS 35.0%
TGAAGGATTACAAGAGACAA+AGG + chr7_4:9158659-9158678 Msa1139090:CDS 35.0%
TTAAACTACTTCCTACCTGA+TGG + chr7_4:9158882-9158901 Msa1139090:CDS 35.0%
TGATTTCATATCCATCAGGT+AGG - chr7_4:9158896-9158915 None:intergenic 35.0%
AGCTTGATTTCATATCCATC+AGG - chr7_4:9158900-9158919 None:intergenic 35.0%
!! CGATTCGTTTTTAACGTACA+AGG + chr7_4:9159024-9159043 Msa1139090:intron 35.0%
ACTGCTCAAAACTATATAGG+AGG + chr7_4:9159443-9159462 Msa1139090:CDS 35.0%
AACTTCATTGACGAACTCCT+TGG - chr7_4:9157861-9157880 None:intergenic 40.0%
TTGAACTACTTCATGCCTGA+TGG + chr7_4:9158137-9158156 Msa1139090:CDS 40.0%
AATCAAGCTTCTATCTGAGG+AGG + chr7_4:9158166-9158185 Msa1139090:CDS 40.0%
TGAAATCAAGCTTCCATTGG+AGG + chr7_4:9158908-9158927 Msa1139090:CDS 40.0%
TGAAATTGTTCCTCCTCCAA+TGG - chr7_4:9158924-9158943 None:intergenic 40.0%
! CAGGTTACTACACTTTTCCA+AGG + chr7_4:9159359-9159378 Msa1139090:intron 40.0%
AGTAAACTCGTCAAGAAGGT+CGG - chr7_4:9159390-9159409 None:intergenic 40.0%
AGTGAGTAAACTCGTCAAGA+AGG - chr7_4:9159394-9159413 None:intergenic 40.0%
AATCTTCCAATGCTGGGTAT+TGG - chr7_4:9159472-9159491 None:intergenic 40.0%
! ATACCCAGCATTGGAAGATT+TGG + chr7_4:9159472-9159491 Msa1139090:CDS 40.0%
CTTCCAAATCTTCCAATGCT+GGG - chr7_4:9159478-9159497 None:intergenic 40.0%
AACTTCATTGACGAACTCCT+TGG - chr7_4:9157861-9157880 None:intergenic 40.0%
TTGAACTACTTCATGCCTGA+TGG + chr7_4:9158137-9158156 Msa1139090:CDS 40.0%
AATCAAGCTTCTATCTGAGG+AGG + chr7_4:9158166-9158185 Msa1139090:CDS 40.0%
TGAAATCAAGCTTCCATTGG+AGG + chr7_4:9158908-9158927 Msa1139090:CDS 40.0%
TGAAATTGTTCCTCCTCCAA+TGG - chr7_4:9158924-9158943 None:intergenic 40.0%
! CAGGTTACTACACTTTTCCA+AGG + chr7_4:9159359-9159378 Msa1139090:intron 40.0%
AGTAAACTCGTCAAGAAGGT+CGG - chr7_4:9159390-9159409 None:intergenic 40.0%
AGTGAGTAAACTCGTCAAGA+AGG - chr7_4:9159394-9159413 None:intergenic 40.0%
AATCTTCCAATGCTGGGTAT+TGG - chr7_4:9159472-9159491 None:intergenic 40.0%
! ATACCCAGCATTGGAAGATT+TGG + chr7_4:9159472-9159491 Msa1139090:CDS 40.0%
CTTCCAAATCTTCCAATGCT+GGG - chr7_4:9159478-9159497 None:intergenic 40.0%
TTGTGACGTCAAAAAGGCCA+AGG + chr7_4:9157841-9157860 Msa1139090:CDS 45.0%
ATCTGAGGAGGAACAATCTC+TGG + chr7_4:9158178-9158197 Msa1139090:CDS 45.0%
TTGAACTACTTCATGCCCGA+TGG + chr7_4:9158493-9158512 Msa1139090:CDS 45.0%
AATCAAGCTTCCATTGGAGG+AGG + chr7_4:9158911-9158930 Msa1139090:CDS 45.0%
GTAAACTCGTCAAGAAGGTC+GGG - chr7_4:9159389-9159408 None:intergenic 45.0%
CCTTCCAAATCTTCCAATGC+TGG - chr7_4:9159479-9159498 None:intergenic 45.0%
! CCAGCATTGGAAGATTTGGA+AGG + chr7_4:9159476-9159495 Msa1139090:CDS 45.0%
TTGTGACGTCAAAAAGGCCA+AGG + chr7_4:9157841-9157860 Msa1139090:CDS 45.0%
ATCTGAGGAGGAACAATCTC+TGG + chr7_4:9158178-9158197 Msa1139090:CDS 45.0%
TTGAACTACTTCATGCCCGA+TGG + chr7_4:9158493-9158512 Msa1139090:CDS 45.0%
AATCAAGCTTCCATTGGAGG+AGG + chr7_4:9158911-9158930 Msa1139090:CDS 45.0%
GTAAACTCGTCAAGAAGGTC+GGG - chr7_4:9159389-9159408 None:intergenic 45.0%
CCTTCCAAATCTTCCAATGC+TGG - chr7_4:9159479-9159498 None:intergenic 45.0%
! CCAGCATTGGAAGATTTGGA+AGG + chr7_4:9159476-9159495 Msa1139090:CDS 45.0%
!!! ATTTTTTTATTATATTTTGT+AGG + chr7_4:9158401-9158420 Msa1139090:intron 5.0%
!!! TTTATTTTTAAATAATGAAA+TGG + chr7_4:9158730-9158749 Msa1139090:intron 5.0%
!!! ATTTTTTTATTATATTTTGT+AGG + chr7_4:9158401-9158420 Msa1139090:intron 5.0%
!!! TTTATTTTTAAATAATGAAA+TGG + chr7_4:9158730-9158749 Msa1139090:intron 5.0%
AGGATTGACGCTGCGAATCT+TGG + chr7_4:9158421-9158440 Msa1139090:intron 50.0%
TGAAATCAAGCTGCCATCGG+AGG + chr7_4:9158519-9158538 Msa1139090:CDS 50.0%
AGAGATTCTTCCTCCTCCGA+TGG - chr7_4:9158535-9158554 None:intergenic 50.0%
AGGTCTCCAATACCCAGCAT+TGG + chr7_4:9159463-9159482 Msa1139090:CDS 50.0%
AGGATTGACGCTGCGAATCT+TGG + chr7_4:9158421-9158440 Msa1139090:intron 50.0%
TGAAATCAAGCTGCCATCGG+AGG + chr7_4:9158519-9158538 Msa1139090:CDS 50.0%
AGAGATTCTTCCTCCTCCGA+TGG - chr7_4:9158535-9158554 None:intergenic 50.0%
AGGTCTCCAATACCCAGCAT+TGG + chr7_4:9159463-9159482 Msa1139090:CDS 50.0%
AATCAAGCTGCCATCGGAGG+AGG + chr7_4:9158522-9158541 Msa1139090:CDS 55.0%
CAAGAAGGTCGGGATGTCCT+TGG - chr7_4:9159379-9159398 None:intergenic 55.0%
AATCAAGCTGCCATCGGAGG+AGG + chr7_4:9158522-9158541 Msa1139090:CDS 55.0%
CAAGAAGGTCGGGATGTCCT+TGG - chr7_4:9159379-9159398 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 9157818 9159511 9157818 ID=Msa1139090;Name=Msa1139090
chr7_4 mRNA 9157818 9159511 9157818 ID=Msa1139090-mRNA-1;Parent=Msa1139090;Name=Msa1139090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|5|0|313
chr7_4 exon 9157818 9157960 9157818 ID=Msa1139090-mRNA-1:exon:2388;Parent=Msa1139090-mRNA-1
chr7_4 exon 9158067 9158324 9158067 ID=Msa1139090-mRNA-1:exon:2389;Parent=Msa1139090-mRNA-1
chr7_4 exon 9158423 9158680 9158423 ID=Msa1139090-mRNA-1:exon:2390;Parent=Msa1139090-mRNA-1
chr7_4 exon 9158812 9158944 9158812 ID=Msa1139090-mRNA-1:exon:2391;Parent=Msa1139090-mRNA-1
chr7_4 exon 9159362 9159511 9159362 ID=Msa1139090-mRNA-1:exon:2392;Parent=Msa1139090-mRNA-1
chr7_4 CDS 9157818 9157960 9157818 ID=Msa1139090-mRNA-1:cds;Parent=Msa1139090-mRNA-1
chr7_4 CDS 9158067 9158324 9158067 ID=Msa1139090-mRNA-1:cds;Parent=Msa1139090-mRNA-1
chr7_4 CDS 9158423 9158680 9158423 ID=Msa1139090-mRNA-1:cds;Parent=Msa1139090-mRNA-1
chr7_4 CDS 9158812 9158944 9158812 ID=Msa1139090-mRNA-1:cds;Parent=Msa1139090-mRNA-1
chr7_4 CDS 9159362 9159511 9159362 ID=Msa1139090-mRNA-1:cds;Parent=Msa1139090-mRNA-1
Gene Sequence

>Msa1139090

ATGGAAGGACATTCTCAAGAACATTGTGACGTCAAAAAGGCCAAGGAGTTCGTCAATGAAGTTAAGCATAGATTTATTCAAGTTAACAGGAGGGATAAGTATGTTGACTTTTTGAATGTCTTGATGCATTACAAGAAACAAAGGATCGATGATGCAAATCTCAGTAAATTCTTGAAGGGATTATTTGAAGGTCATGGAGATCTTATATCAAGATTGAACTACTTCATGCCTGATGGATTTGAAATCAAGCTTCTATCTGAGGAGGAACAATCTCTGGAGCATTTTGTAGCCAAAAATGCGAAAGAATTTGTCAATGATGTTAAGTGTAGATTTATTCAAGTTAATCAGAGGGATAAGTATGATAACTTTCTGAATGTCTTTAAGGATTACAAAACACAAAGGATTGACGCTGCGAATCTTGGTGAATTATTGAAGGGATTATTTCAAGGTCATAGAGACCTTATATCAAGATTGAACTACTTCATGCCCGATGGATTTGAAATCAAGCTGCCATCGGAGGAGGAAGAATCTCTTGAACATTCTGAAGAAAAAACTGCCAAAGAATTTGTCAATGATGTTAAGTGTAGATTTATTCAAGTTAATCAGAGGGAAAAGTATGTTAACTTTCTGAATGTGTTGAAGGATTACAAGAGACAAAGAATTGATGATGCAAATCTGGTTAAAATAATGAAGAAAATATTTGAAGGTCATAGCGATTTAATATCAAGATTAAACTACTTCCTACCTGATGGATATGAAATCAAGCTTCCATTGGAGGAGGAACAATTTCACGTTACTACACTTTTCCAAGGACATCCCGACCTTCTTGACGAGTTTACTCACTTCCTTCAAAACACTATTTCATCTCAAGTTACTGCTCAAAACTATATAGGAGGTCTCCAATACCCAGCATTGGAAGATTTGGAAGGAGCGAAATTATAG

Protein sequence

>Msa1139090

MEGHSQEHCDVKKAKEFVNEVKHRFIQVNRRDKYVDFLNVLMHYKKQRIDDANLSKFLKGLFEGHGDLISRLNYFMPDGFEIKLLSEEEQSLEHFVAKNAKEFVNDVKCRFIQVNQRDKYDNFLNVFKDYKTQRIDAANLGELLKGLFQGHRDLISRLNYFMPDGFEIKLPSEEEESLEHSEEKTAKEFVNDVKCRFIQVNQREKYVNFLNVLKDYKRQRIDDANLVKIMKKIFEGHSDLISRLNYFLPDGYEIKLPLEEEQFHVTTLFQGHPDLLDEFTHFLQNTISSQVTAQNYIGGLQYPALEDLEGAKL*