AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1139340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1139340 MtrunA17_Chr7g0267131 86.250 80 11 0 1 80 66 145 9.83e-45 145
Msa1139340 MtrunA17_Chr7g0228891 84.615 78 7 2 82 154 1 78 1.78e-39 134
Msa1139340 MtrunA17_Chr3g0110351 65.882 85 24 2 82 161 1 85 2.13e-30 112
Msa1139340 MtrunA17_Chr5g0434571 68.750 80 20 2 82 156 37 116 2.51e-30 112
Msa1139340 MtrunA17_Chr1g0177871 54.348 92 40 1 1 90 66 157 3.86e-29 107
Msa1139340 MtrunA17_Chr7g0261281 58.824 85 30 2 82 161 1 85 1.19e-28 106
Msa1139340 MtrunA17_Chr4g0057031 61.176 85 28 2 82 161 1 85 5.11e-28 105
Msa1139340 MtrunA17_Chr5g0410961 57.647 85 31 2 82 161 1 85 1.05e-26 102
Msa1139340 MtrunA17_Chr1g0187761 56.471 85 32 2 82 161 1 85 1.72e-26 100
Msa1139340 MtrunA17_Chr8g0349261 59.770 87 28 3 82 161 1 87 2.54e-26 101
Msa1139340 MtrunA17_Chr7g0274581 52.941 85 35 2 82 161 1 85 3.20e-26 99.0
Msa1139340 MtrunA17_Chr6g0453471 57.647 85 31 2 82 161 1 85 3.57e-26 101
Msa1139340 MtrunA17_Chr2g0323411 60.000 85 29 2 82 161 1 85 5.63e-26 100
Msa1139340 MtrunA17_Chr7g0217741 61.538 78 25 2 82 154 1 78 8.47e-26 100
Msa1139340 MtrunA17_Chr4g0042611 54.118 85 34 2 82 161 1 85 9.77e-26 94.0
Msa1139340 MtrunA17_Chr4g0060721 56.471 85 32 2 82 161 2 86 1.10e-25 100
Msa1139340 MtrunA17_Chr3g0115821 56.471 85 32 2 82 161 1 85 1.13e-25 100
Msa1139340 MtrunA17_Chr4g0039971 58.824 85 30 2 82 161 2 86 1.26e-25 100
Msa1139340 MtrunA17_Chr1g0167691 58.974 78 27 2 82 154 1 78 1.34e-25 98.2
Msa1139340 MtrunA17_Chr4g0042671 56.471 85 32 2 82 161 1 85 2.92e-25 99.8
Msa1139340 MtrunA17_Chr3g0131121 57.647 85 31 2 82 161 1 85 3.22e-25 98.2
Msa1139340 MtrunA17_Chr7g0217221 56.471 85 32 2 82 161 1 85 8.07e-25 96.7
Msa1139340 MtrunA17_Chr6g0453211 56.471 85 32 2 82 161 1 85 1.02e-24 97.4
Msa1139340 MtrunA17_Chr2g0281071 56.977 86 31 3 82 161 1 86 1.40e-24 97.4
Msa1139340 MtrunA17_Chr1g0194951 65.385 78 22 2 82 154 1 78 1.40e-24 97.8
Msa1139340 MtrunA17_Chr2g0294811 55.294 85 33 1 82 161 1 85 1.53e-24 92.0
Msa1139340 MtrunA17_Chr7g0254411 56.471 85 32 2 82 161 1 85 1.74e-24 97.1
Msa1139340 MtrunA17_Chr4g0048511 58.140 86 30 3 82 161 1 86 2.97e-24 96.7
Msa1139340 MtrunA17_Chr1g0203411 54.118 85 34 2 82 161 1 85 4.08e-24 95.1
Msa1139340 MtrunA17_Chr1g0152011 59.494 79 25 3 82 154 1 78 4.10e-24 95.9
Msa1139340 MtrunA17_Chr1g0167661 56.977 86 31 3 82 162 1 85 4.92e-24 94.4
Msa1139340 MtrunA17_Chr5g0400821 56.962 79 28 2 82 154 1 79 5.43e-24 95.1
Msa1139340 MtrunA17_Chr7g0275911 58.974 78 27 2 82 154 1 78 8.38e-24 93.6
Msa1139340 MtrunA17_Chr1g0151941 56.962 79 27 3 82 154 1 78 1.07e-23 93.2
Msa1139340 MtrunA17_Chr3g0135311 58.228 79 26 3 82 154 1 78 1.12e-23 94.7
Msa1139340 MtrunA17_Chr4g0068061 56.471 85 32 2 82 161 1 85 1.15e-23 94.7
Msa1139340 MtrunA17_Chr4g0037141 54.118 85 34 2 82 161 1 85 1.28e-23 93.6
Msa1139340 MtrunA17_Chr2g0311221 59.740 77 26 2 83 154 4 80 1.71e-23 94.0
Msa1139340 MtrunA17_Chr1g0193371 56.471 85 32 2 82 161 1 85 2.33e-23 94.4
Msa1139340 MtrunA17_Chr8g0346561 52.941 85 35 2 82 161 1 85 2.82e-23 93.2
Msa1139340 MtrunA17_Chr3g0092401 54.118 85 34 2 82 161 2 86 3.13e-23 93.2
Msa1139340 MtrunA17_Chr4g0054391 59.494 79 25 3 82 154 1 78 3.80e-23 92.8
Msa1139340 MtrunA17_Chr6g0487491 59.494 79 25 3 82 154 1 78 3.93e-23 92.0
Msa1139340 MtrunA17_Chr7g0271241 56.471 85 32 2 82 161 1 85 4.25e-23 93.6
Msa1139340 MtrunA17_Chr4g0028311 58.228 79 26 3 82 154 1 78 7.68e-23 92.4
Msa1139340 MtrunA17_Chr3g0103281 55.294 85 33 2 82 161 1 85 9.27e-23 92.0
Msa1139340 MtrunA17_Chr4g0058631 57.647 85 31 2 82 161 1 85 9.53e-23 92.4
Msa1139340 MtrunA17_Chr4g0072751 56.962 79 27 3 82 154 1 78 1.31e-22 92.0
Msa1139340 MtrunA17_Chr8g0342511 52.941 85 35 2 82 161 1 85 1.38e-22 86.3
Msa1139340 MtrunA17_Chr2g0327351 56.962 79 27 3 82 154 1 78 2.91e-22 90.9
Msa1139340 MtrunA17_Chr7g0269831 66.176 68 18 2 82 144 1 68 4.40e-22 90.5
Msa1139340 MtrunA17_Chr2g0330041 60.811 74 24 2 82 150 1 74 4.93e-22 90.9
Msa1139340 MtrunA17_Chr8g0385321 51.136 88 37 3 82 164 1 87 6.29e-22 89.7
Msa1139340 MtrunA17_Chr3g0142571 52.113 71 34 0 1 71 66 136 6.73e-22 89.4
Msa1139340 MtrunA17_Chr6g0452271 56.410 78 29 2 82 154 1 78 6.85e-22 90.1
Msa1139340 MtrunA17_Chr3g0121241 59.459 74 25 2 86 154 35 108 7.50e-22 89.4
Msa1139340 MtrunA17_Chr7g0264641 53.947 76 29 2 82 151 1 76 8.67e-22 88.6
Msa1139340 MtrunA17_Chr7g0270891 56.471 85 32 2 82 161 1 85 1.01e-21 89.7
Msa1139340 MtrunA17_Chr2g0323351 55.128 78 30 2 82 154 1 78 1.45e-21 87.8
Msa1139340 MtrunA17_Chr4g0070641 51.765 85 36 1 82 161 1 85 3.84e-21 84.7
Msa1139340 MtrunA17_Chr3g0117091 56.471 85 32 2 82 161 1 85 5.85e-21 87.4
Msa1139340 MtrunA17_Chr5g0435101 50.602 83 36 2 84 161 2 84 5.91e-21 85.1
Msa1139340 MtrunA17_Chr1g0193801 55.294 85 33 2 82 161 1 85 8.79e-21 87.4
Msa1139340 MtrunA17_Chr8g0342531 51.765 85 36 2 82 161 1 85 1.01e-20 83.6
Msa1139340 MtrunA17_Chr4g0022931 51.899 79 32 3 82 154 1 79 1.62e-20 85.1
Msa1139340 MtrunA17_Chr5g0395221 53.086 81 33 1 86 161 5 85 1.64e-20 80.9
Msa1139340 MtrunA17_Chr4g0070611 51.765 85 36 1 82 161 1 85 1.70e-20 85.9
Msa1139340 MtrunA17_Chr8g0342541 58.108 74 26 2 82 150 1 74 2.15e-20 85.9
Msa1139340 MtrunA17_Chr4g0022901 51.899 79 32 3 82 154 1 79 2.61e-20 84.7
Msa1139340 MtrunA17_Chr5g0397231 50.588 85 37 2 82 161 1 85 3.18e-20 85.5
Msa1139340 MtrunA17_Chr1g0211161 55.422 83 32 2 84 161 4 86 3.77e-20 83.6
Msa1139340 MtrunA17_Chr4g0022911 50.633 79 33 3 82 154 1 79 3.82e-20 84.7
Msa1139340 MtrunA17_Chr4g0032401 56.757 74 27 2 93 161 17 90 5.46e-20 84.7
Msa1139340 MtrunA17_Chr8g0387421 49.412 85 38 2 82 161 1 85 6.17e-20 84.3
Msa1139340 MtrunA17_Chr2g0323321 53.846 78 30 3 82 154 1 77 8.06e-20 79.7
Msa1139340 MtrunA17_Chr2g0309911 52.941 85 34 3 82 161 1 84 1.03e-19 83.6
Msa1139340 MtrunA17_Chr8g0342521 56.757 74 27 2 82 150 1 74 1.47e-19 83.6
Msa1139340 MtrunA17_Chr8g0342461 50.000 86 37 2 82 161 1 86 1.77e-19 79.7
Msa1139340 MtrunA17_Chr5g0395281 51.765 85 36 2 82 161 1 85 1.82e-19 82.8
Msa1139340 MtrunA17_Chr8g0342471 50.000 86 37 2 82 161 1 86 1.95e-19 79.3
Msa1139340 MtrunA17_Chr8g0342481 56.000 75 27 2 82 150 1 75 2.10e-19 83.6
Msa1139340 MtrunA17_Chr2g0328771 55.405 74 28 2 93 161 20 93 4.55e-19 82.0
Msa1139340 MtrunA17_Chr4g0044421 50.000 84 36 3 84 161 2 85 1.40e-18 78.6
Msa1139340 MtrunA17_Chr1g0203441 52.326 86 35 3 82 161 1 86 5.72e-18 78.6
Msa1139340 MtrunA17_Chr3g0099141 52.113 71 29 2 89 154 36 106 5.80e-18 75.9
Msa1139340 MtrunA17_Chr3g0088461 51.282 78 33 2 89 161 18 95 6.10e-18 79.3
Msa1139340 MtrunA17_Chr4g0022881 51.282 78 33 2 82 154 1 78 6.43e-18 77.8
Msa1139340 MtrunA17_Chr8g0354661 56.522 69 25 2 91 154 35 103 7.15e-18 79.7
Msa1139340 MtrunA17_Chr1g0156501 38.144 97 57 1 1 97 66 159 1.24e-17 78.2
Msa1139340 MtrunA17_Chr5g0425591 50.000 70 30 2 91 155 7 76 1.45e-17 73.2
Msa1139340 MtrunA17_Chr3g0099131 53.731 67 26 2 93 154 41 107 2.91e-17 77.8
Msa1139340 MtrunA17_Chr5g0417821 48.684 76 34 2 91 161 5 80 3.79e-17 76.6
Msa1139340 MtrunA17_Chr4g0022891 48.718 78 35 2 82 154 1 78 4.85e-17 75.5
Msa1139340 MtrunA17_Chr3g0080861 53.623 69 27 2 91 154 35 103 1.43e-16 75.9
Msa1139340 MtrunA17_Chr6g0450101 46.753 77 34 3 82 151 1 77 2.81e-16 72.8
Msa1139340 MtrunA17_Chr2g0293911 51.562 64 26 2 89 147 20 83 3.82e-16 73.9
Msa1139340 MtrunA17_Chr4g0055981 50.649 77 33 2 90 161 52 128 4.93e-16 72.8
Msa1139340 MtrunA17_Chr6g0470971 50.649 77 33 2 90 161 11 87 7.10e-16 72.8
Msa1139340 MtrunA17_Chr7g0228231 51.562 64 26 2 93 151 14 77 7.84e-16 71.6
Msa1139340 MtrunA17_Chr1g0154031 53.731 67 26 2 93 154 76 142 9.32e-16 73.6
Msa1139340 MtrunA17_Chr2g0322521 54.839 62 23 2 90 146 26 87 1.24e-15 73.2
Msa1139340 MtrunA17_Chr1g0194291 48.529 68 30 2 89 151 17 84 2.31e-15 71.2
Msa1139340 MtrunA17_Chr4g0068921 50.000 64 27 2 89 147 20 83 2.40e-15 70.1
Msa1139340 MtrunA17_Chr6g0453751 42.169 83 35 2 92 161 19 101 3.32e-15 68.2
Msa1139340 MtrunA17_Chr5g0440781 46.377 69 32 2 94 157 13 81 7.30e-15 68.6
Msa1139340 MtrunA17_Chr1g0168661 53.030 66 26 2 94 154 22 87 1.01e-14 69.3
Msa1139340 MtrunA17_Chr1g0209661 50.000 64 27 2 93 151 27 90 1.22e-14 69.7
Msa1139340 MtrunA17_Chr5g0440761 46.377 69 32 2 94 157 13 81 2.58e-14 68.6
Msa1139340 MtrunA17_Chr1g0194301 48.529 68 30 2 89 151 29 96 2.69e-14 68.6
Msa1139340 MtrunA17_Chr5g0441141 46.377 69 32 2 94 157 13 81 3.47e-14 68.2
Msa1139340 MtrunA17_Chr1g0192411 43.590 78 39 2 82 154 1 78 8.13e-14 67.8
Msa1139340 MtrunA17_Chr1g0186061 51.515 66 27 2 94 154 21 86 9.14e-14 67.0
Msa1139340 MtrunA17_Chr2g0327821 51.562 64 26 2 93 151 6 69 1.37e-13 66.2
Msa1139340 MtrunA17_Chr1g0180391 47.222 72 33 2 85 151 11 82 3.66e-13 64.7
Msa1139340 MtrunA17_Chr8g0334881 45.070 71 34 2 89 154 6 76 1.01e-12 64.3
Msa1139340 MtrunA17_Chr4g0013361 46.269 67 31 2 93 154 10 76 3.01e-12 63.2
Msa1139340 MtrunA17_Chr7g0247131 60.870 46 18 0 116 161 6 51 3.28e-12 62.8
Msa1139340 MtrunA17_Chr4g0030881 47.143 70 25 2 94 151 8 77 3.47e-12 62.4
Msa1139340 MtrunA17_Chr8g0343831 46.269 67 31 2 93 154 8 74 7.59e-12 61.6
Msa1139340 MtrunA17_Chr7g0220341 42.500 80 39 2 89 161 21 100 1.75e-11 60.8
Msa1139340 MtrunA17_Chr5g0441131 40.541 74 39 2 87 155 3 76 2.04e-11 59.3
Msa1139340 MtrunA17_Chr7g0240821 50.000 70 30 2 97 161 5 74 2.28e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1139340 AT5G14340.1 76.923 78 13 2 82 154 13 90 8.65e-36 125
Msa1139340 AT5G16600.1 68.235 85 22 2 82 161 1 85 4.04e-32 117
Msa1139340 AT3G23250.1 62.353 85 27 2 82 161 1 85 7.40e-31 113
Msa1139340 AT1G66230.1 67.500 80 21 2 82 156 1 80 4.56e-30 110
Msa1139340 AT2G31180.1 60.000 85 29 2 82 161 1 85 9.10e-29 106
Msa1139340 AT1G06180.1 58.824 85 30 2 82 161 1 85 1.52e-28 106
Msa1139340 AT4G22680.1 64.103 78 22 3 82 154 1 77 1.06e-27 104
Msa1139340 AT1G79180.1 61.905 84 23 3 83 157 4 87 1.56e-27 104
Msa1139340 AT4G28110.1 57.647 85 31 2 82 161 1 85 4.79e-27 103
Msa1139340 AT4G12350.1 58.824 85 30 2 82 161 1 85 5.55e-27 102
Msa1139340 AT5G15310.4 58.824 85 30 2 82 161 1 85 6.44e-27 102
Msa1139340 AT3G02940.2 57.647 85 31 2 82 161 1 85 7.49e-27 103
Msa1139340 AT1G16490.1 63.636 77 23 2 83 154 4 80 9.80e-27 102
Msa1139340 AT3G02940.1 57.647 85 31 2 82 161 1 85 1.10e-26 102
Msa1139340 AT3G02940.3 57.647 85 31 2 82 161 1 85 1.10e-26 102
Msa1139340 AT3G01140.2 58.824 85 30 2 82 161 1 85 1.14e-26 103
Msa1139340 AT5G16770.4 57.647 85 31 2 82 161 1 85 1.49e-26 102
Msa1139340 AT5G16770.3 57.647 85 31 2 82 161 1 85 1.49e-26 102
Msa1139340 AT1G56160.1 59.524 84 29 2 83 161 4 87 1.62e-26 102
Msa1139340 AT1G08810.1 58.824 85 30 2 82 161 1 85 2.06e-26 101
Msa1139340 AT5G15310.1 58.824 85 30 2 82 161 1 85 2.30e-26 102
Msa1139340 AT5G16770.1 57.647 85 31 2 82 161 1 85 2.48e-26 102
Msa1139340 AT5G16770.2 57.647 85 31 2 82 161 1 85 2.48e-26 102
Msa1139340 AT5G15310.2 58.824 85 30 2 82 161 1 85 2.54e-26 101
Msa1139340 AT3G61250.1 57.647 85 31 2 82 161 1 85 3.10e-26 101
Msa1139340 AT3G47600.1 57.647 85 31 2 82 161 1 85 1.49e-25 100
Msa1139340 AT4G21440.1 61.538 78 25 2 82 154 1 78 1.75e-25 100
Msa1139340 AT5G62470.1 55.952 84 33 1 82 161 1 84 1.94e-25 100
Msa1139340 AT5G62470.2 56.471 85 32 2 82 161 1 85 3.69e-25 99.4
Msa1139340 AT4G09460.1 61.538 78 24 3 82 154 1 77 4.64e-25 97.1
Msa1139340 AT1G35515.1 58.974 78 27 2 82 154 1 78 4.92e-25 96.3
Msa1139340 AT3G49690.1 58.228 79 27 2 82 154 1 79 7.23e-25 97.8
Msa1139340 AT5G65790.1 56.790 81 29 2 82 156 1 81 1.15e-24 98.2
Msa1139340 AT1G74650.1 56.471 85 32 2 82 161 1 85 1.35e-24 97.4
Msa1139340 AT3G28910.1 57.647 85 31 2 82 161 1 85 1.53e-24 97.1
Msa1139340 AT5G65230.1 55.294 85 33 2 82 161 1 85 2.60e-24 96.3
Msa1139340 AT4G05100.1 60.759 79 25 3 82 154 1 79 3.08e-24 96.3
Msa1139340 AT2G36890.2 48.485 99 42 3 67 156 24 122 4.13e-24 96.3
Msa1139340 AT5G56110.1 57.647 85 31 2 82 161 1 85 4.90e-24 95.9
Msa1139340 AT3G62610.1 56.322 87 33 2 82 163 1 87 5.39e-24 95.9
Msa1139340 AT3G12820.1 60.256 78 26 2 84 156 5 82 5.42e-24 94.0
Msa1139340 AT3G01140.1 58.025 81 29 2 86 161 48 128 6.64e-24 96.3
Msa1139340 AT1G34670.1 54.118 85 34 2 82 161 1 85 7.24e-24 95.9
Msa1139340 AT2G47460.1 57.647 85 31 2 82 161 1 85 1.10e-23 95.5
Msa1139340 AT3G13540.1 62.162 74 23 2 86 154 16 89 1.25e-23 93.6
Msa1139340 AT4G37780.1 58.228 79 26 3 82 154 1 78 1.35e-23 94.4
Msa1139340 AT5G10280.1 55.294 85 33 2 82 161 1 85 1.42e-23 94.7
Msa1139340 AT5G23000.1 60.759 79 24 3 82 154 1 78 1.76e-23 94.4
Msa1139340 AT2G36890.1 54.321 81 31 2 82 156 1 81 1.92e-23 94.0
Msa1139340 AT4G38620.1 55.294 85 33 2 82 161 1 85 2.08e-23 93.6
Msa1139340 AT5G49330.1 57.647 85 31 2 82 161 1 85 2.16e-23 94.4
Msa1139340 AT5G57620.1 58.228 79 26 3 82 154 1 78 3.17e-23 94.0
Msa1139340 AT2G16720.1 54.118 85 34 2 82 161 1 85 3.76e-23 92.4
Msa1139340 AT5G62320.1 58.750 80 21 2 83 150 3 82 4.21e-23 92.0
Msa1139340 AT1G79180.2 44.444 117 23 3 83 157 4 120 3.28e-22 90.9
Msa1139340 AT1G22640.1 52.941 85 35 2 82 161 1 85 3.83e-22 89.7
Msa1139340 AT5G26660.1 55.294 85 33 2 82 161 1 85 4.25e-22 90.9
Msa1139340 AT1G74080.1 52.381 84 35 2 82 160 1 84 4.42e-22 90.9
Msa1139340 AT1G09540.1 56.471 85 32 2 82 161 1 85 4.49e-22 91.3
Msa1139340 AT4G01680.3 55.294 85 33 2 82 161 1 85 7.34e-22 88.6
Msa1139340 AT4G34990.1 54.118 85 34 2 82 161 1 85 1.16e-21 88.6
Msa1139340 AT4G17785.2 53.488 86 34 3 82 161 1 86 1.43e-21 89.7
Msa1139340 AT4G17785.1 56.962 79 28 3 82 154 1 79 1.45e-21 89.7
Msa1139340 AT3G13890.2 54.118 85 34 2 82 161 1 85 1.75e-21 89.4
Msa1139340 AT1G57560.1 54.118 85 34 2 82 161 1 85 3.38e-21 88.2
Msa1139340 AT1G57560.2 54.118 85 34 2 82 161 1 85 3.52e-21 87.4
Msa1139340 AT4G01680.1 55.294 85 33 2 82 161 1 85 3.73e-21 88.2
Msa1139340 AT3G28470.1 53.846 78 31 2 82 154 1 78 4.30e-21 87.8
Msa1139340 AT5G60890.1 53.846 78 31 2 82 154 1 78 4.95e-21 87.4
Msa1139340 AT5G07690.1 55.128 78 29 3 82 154 1 77 1.39e-20 86.7
Msa1139340 AT5G61420.2 53.846 78 30 3 82 154 1 77 1.67e-20 87.0
Msa1139340 AT2G36020.1 37.500 96 54 1 1 90 66 161 2.13e-20 85.1
Msa1139340 AT5G42560.3 41.304 92 54 0 1 92 55 146 3.42e-20 85.1
Msa1139340 AT5G42560.2 41.304 92 54 0 1 92 55 146 3.42e-20 85.1
Msa1139340 AT5G42560.1 41.304 92 54 0 1 92 66 157 4.04e-20 85.1
Msa1139340 AT1G74430.1 52.941 85 35 2 82 161 1 85 5.16e-20 84.3
Msa1139340 AT3G12720.1 53.488 86 34 3 81 161 11 95 8.06e-20 84.3
Msa1139340 AT5G12870.1 56.757 74 27 2 93 161 18 91 1.07e-19 83.6
Msa1139340 AT1G63910.1 50.588 85 37 2 82 161 1 85 1.12e-19 84.7
Msa1139340 AT3G08500.1 53.846 78 31 2 89 161 26 103 1.16e-19 84.3
Msa1139340 AT3G13890.1 47.872 94 35 2 82 161 1 94 1.56e-19 84.3
Msa1139340 AT1G18570.1 55.696 79 29 3 82 154 1 79 1.82e-19 84.0
Msa1139340 AT4G01680.2 48.454 97 33 2 82 161 1 97 2.24e-19 83.6
Msa1139340 AT5G07700.1 53.846 78 30 3 82 154 1 77 5.11e-19 82.4
Msa1139340 AT5G07700.2 53.846 78 30 3 82 154 1 77 5.11e-19 82.4
Msa1139340 AT5G54230.1 52.564 78 32 2 82 154 1 78 4.60e-18 79.7
Msa1139340 AT1G75700.1 46.479 71 38 0 1 71 66 136 6.19e-18 77.0
Msa1139340 AT1G75700.2 46.479 71 38 0 1 71 66 136 6.19e-18 77.0
Msa1139340 AT3G01530.1 56.250 64 23 2 93 151 25 88 1.03e-17 77.0
Msa1139340 AT1G75700.3 46.479 71 38 0 1 71 95 165 1.11e-17 77.0
Msa1139340 AT1G18710.1 48.235 85 39 2 82 161 1 85 1.93e-17 77.4
Msa1139340 AT2G32460.1 56.923 65 23 2 92 151 17 81 5.54e-17 77.4
Msa1139340 AT2G26960.1 51.429 70 29 2 90 154 17 86 5.84e-17 77.4
Msa1139340 AT2G32460.2 56.923 65 23 2 92 151 5 69 6.57e-17 77.4
Msa1139340 AT3G06490.1 57.812 64 22 2 89 147 15 78 7.58e-17 76.3
Msa1139340 AT3G27920.1 51.515 66 27 2 94 154 15 80 1.30e-16 74.3
Msa1139340 AT5G55020.1 53.623 69 27 2 91 154 24 92 1.44e-16 76.3
Msa1139340 AT1G68320.1 54.688 64 24 2 93 151 19 82 4.09e-16 73.9
Msa1139340 AT3G27810.1 51.562 64 26 2 93 151 20 83 4.41e-16 73.2
Msa1139340 AT5G40350.1 51.562 64 26 2 93 151 17 80 5.89e-16 72.4
Msa1139340 AT3G11440.3 50.746 67 28 2 93 154 41 107 6.13e-16 74.7
Msa1139340 AT3G11440.4 50.746 67 28 2 93 154 41 107 6.13e-16 74.7
Msa1139340 AT3G11440.1 50.746 67 28 2 93 154 41 107 6.13e-16 74.7
Msa1139340 AT5G06100.5 47.887 71 32 2 89 154 28 98 1.15e-15 73.9
Msa1139340 AT5G06100.2 47.887 71 32 2 89 154 28 98 1.15e-15 73.9
Msa1139340 AT5G06100.3 47.887 71 32 2 89 154 28 98 1.15e-15 73.9
Msa1139340 AT5G06100.4 47.887 71 32 2 89 154 28 98 1.15e-15 73.9
Msa1139340 AT3G11440.2 39.806 103 46 3 68 154 5 107 1.33e-15 73.6
Msa1139340 AT1G19950.1 44.118 68 38 0 1 68 66 133 1.41e-15 72.8
Msa1139340 AT5G14750.1 47.945 73 33 2 94 161 17 89 1.77e-15 70.9
Msa1139340 AT5G06100.1 47.887 71 32 2 89 154 28 98 2.85e-15 72.4
Msa1139340 AT4G26930.1 51.515 66 27 2 91 151 17 82 3.00e-15 72.4
Msa1139340 AT1G48000.1 51.515 66 27 2 91 151 30 95 9.38e-15 69.7
Msa1139340 AT3G24310.1 52.941 68 27 2 92 154 17 84 1.05e-14 70.1
Msa1139340 AT5G40330.1 45.205 73 35 2 94 161 13 85 1.20e-14 68.9
Msa1139340 AT3G30210.1 50.769 65 27 2 92 151 26 90 2.54e-14 68.9
Msa1139340 AT1G25340.1 50.794 63 26 2 94 151 19 81 3.96e-14 68.6
Msa1139340 AT5G49620.1 48.438 64 28 2 89 147 22 85 5.05e-14 68.6
Msa1139340 AT5G49620.2 48.438 64 28 2 89 147 22 85 5.68e-14 68.6
Msa1139340 AT4G13480.1 53.030 66 26 2 94 154 7 72 5.78e-14 67.8
Msa1139340 AT2G47190.1 53.125 64 24 2 93 151 20 82 9.83e-14 67.4
Msa1139340 AT3G53200.1 52.941 68 27 2 93 155 9 76 1.46e-13 66.2
Msa1139340 AT3G46130.1 52.308 65 26 2 92 151 8 72 3.44e-13 65.9
Msa1139340 AT5G52260.1 53.521 71 25 3 81 146 3 70 3.55e-13 65.9
Msa1139340 AT5G59780.3 53.968 63 24 2 94 151 9 71 6.43e-13 64.7
Msa1139340 AT4G25560.1 49.315 73 32 2 94 161 11 83 1.07e-12 64.7
Msa1139340 AT1G66380.2 51.515 66 27 2 92 152 7 72 1.82e-12 60.8
Msa1139340 AT3G60460.1 45.714 70 33 2 90 154 8 77 2.49e-12 63.5
Msa1139340 AT1G25340.2 48.276 58 30 0 94 151 19 76 3.63e-12 63.2
Msa1139340 AT1G25340.3 48.276 58 30 0 94 151 19 76 4.51e-12 63.2
Msa1139340 AT5G26660.2 68.293 41 13 0 121 161 14 54 5.54e-12 62.8
Msa1139340 AT1G66380.1 51.515 66 27 2 92 152 7 72 5.96e-12 60.1
Msa1139340 AT5G35550.1 48.649 74 33 2 93 161 14 87 8.96e-12 61.6
Msa1139340 AT3G48920.1 43.836 73 36 2 94 161 19 91 3.04e-11 60.5
Msa1139340 AT5G14750.3 64.103 39 14 0 123 161 17 55 8.31e-11 57.8

Find 44 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACTTTATCCTTAATAAT+TGG 0.145066 7_4:+9608132 Msa1139340:CDS
CTTTAGAGGTTCAAAGAAAA+TGG 0.188117 7_4:+9608037 Msa1139340:CDS
TTTCAAGAGTGGAGAGTTAG+AGG 0.253437 7_4:+9607639 Msa1139340:CDS
AAATTTGCTGATGTGGTTAA+TGG 0.257117 7_4:+9607181 Msa1139340:five_prime_UTR
TATCATAAATGTCAGATATC+TGG 0.317071 7_4:+9608995 Msa1139340:intron
ATACTGAATCCCAATTATTA+AGG 0.317477 7_4:-9608142 None:intergenic
TGGCAAAATTGCACTGAGTT+GGG 0.337616 7_4:+9607684 Msa1139340:CDS
CAATAAAGCCACCTCTCTTA+AGG 0.350479 7_4:-9608348 None:intergenic
GAGAGGTGGCTTTATTGAAA+TGG 0.356209 7_4:+9608354 Msa1139340:CDS
AAGAGTGGAGAGTTAGAGGA+TGG 0.360232 7_4:+9607643 Msa1139340:CDS
GAACTTTATCCTTAATAATT+GGG 0.368286 7_4:+9608133 Msa1139340:CDS
GAGAGTTAGAGGATGGGATT+TGG 0.375083 7_4:+9607650 Msa1139340:CDS
TTCAAAGGTAAAGACTTTAG+AGG 0.378092 7_4:+9608023 Msa1139340:intron
TTATGAAGGTTGCTCATGTA+TGG 0.383212 7_4:+9607290 Msa1139340:intron
TACATGCCCGTCTTGGTAAC+AGG 0.388478 7_4:+9608397 Msa1139340:CDS
GATACCACATGTATATGAAC+AGG 0.409808 7_4:-9607328 None:intergenic
CTGGCAAAATTGCACTGAGT+TGG 0.413346 7_4:+9607683 Msa1139340:CDS
TTTAGAGGTTCAAAGAAAAT+GGG 0.440701 7_4:+9608038 Msa1139340:CDS
TAATAATTGGGATTCAGTAT+TGG 0.441320 7_4:+9608145 Msa1139340:CDS
TGAGATGGATTAATTATTTG+AGG 0.448610 7_4:+9608320 Msa1139340:CDS
TGGGATTCAGTATTGGAGAA+TGG 0.475370 7_4:+9608152 Msa1139340:CDS
AGAGTGGAGAGTTAGAGGAT+GGG 0.481690 7_4:+9607644 Msa1139340:CDS
TGATCTTCTTCAATAGTCCA+TGG 0.502122 7_4:-9608101 None:intergenic
AAGCCACCTCTCTTAAGGTC+CGG 0.528958 7_4:-9608343 None:intergenic
TTTGAAGGTCTTCTAAGATG+TGG 0.533534 7_4:+9608283 Msa1139340:intron
TGGCTTTATTGAAATGGAAG+AGG 0.537114 7_4:+9608360 Msa1139340:CDS
ATACAACTACATGCCCGTCT+TGG 0.537379 7_4:+9608390 Msa1139340:CDS
ATGGATTAATTATTTGAGGC+CGG 0.537452 7_4:+9608324 Msa1139340:CDS
GGCAAAATTGCACTGAGTTG+GGG 0.543534 7_4:+9607685 Msa1139340:CDS
CATGTGGTATCCCAAAACTA+AGG 0.546302 7_4:+9607340 Msa1139340:CDS
TTGACAAGAAGTTTCAAGAG+TGG 0.546722 7_4:+9607628 Msa1139340:CDS
CAACCATGTTGTGATAAGGT+TGG 0.554200 7_4:+9608065 Msa1139340:CDS
GAAAGAGTTGTAGATTGAGA+TGG 0.557753 7_4:+9608305 Msa1139340:CDS
GTTGTACCTGTTACCAAGAC+GGG 0.558437 7_4:-9608403 None:intergenic
GATAAGGTTGGTTTGAAGAG+AGG 0.562058 7_4:+9608077 Msa1139340:CDS
AGGCCGGACCTTAAGAGAGG+TGG 0.570099 7_4:+9608340 Msa1139340:CDS
AAGACAACCATGTTGTGATA+AGG 0.590627 7_4:+9608061 Msa1139340:CDS
TTGAGGCCGGACCTTAAGAG+AGG 0.612418 7_4:+9608337 Msa1139340:CDS
TTGCTGATGTGGTTAATGGA+TGG 0.632656 7_4:+9607185 Msa1139340:five_prime_UTR
AAACCAACCTTATCACAACA+TGG 0.641918 7_4:-9608068 None:intergenic
TTTCCCTGTTCATATACATG+TGG 0.642981 7_4:+9607324 Msa1139340:CDS
TGTTGTACCTGTTACCAAGA+CGG 0.652060 7_4:-9608404 None:intergenic
TTGGTTTGAAGAGAGGACCA+TGG 0.663165 7_4:+9608084 Msa1139340:CDS
ATACCACATGTATATGAACA+GGG 0.714467 7_4:-9607327 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGAACAATGTACAAA+TGG - chr7_4:9607231-9607250 None:intergenic 20.0%
!! TTGTACAAAAAAATTAACGT+TGG + chr7_4:9607263-9607282 Msa1139340:intron 20.0%
!!! AATTTCTTTTTCATTTACCA+AGG + chr7_4:9607455-9607474 Msa1139340:intron 20.0%
!! AAATATATATGCAAAGTTAG+AGG - chr7_4:9607947-9607966 None:intergenic 20.0%
!!! TGATATCTTGATATTTTCAA+AGG + chr7_4:9608008-9608027 Msa1139340:intron 20.0%
!! TGAACTTTATCCTTAATAAT+TGG + chr7_4:9608132-9608151 Msa1139340:CDS 20.0%
!! GAACTTTATCCTTAATAATT+GGG + chr7_4:9608133-9608152 Msa1139340:CDS 20.0%
!!! TATTATTTTTGTCGATAGTT+TGG + chr7_4:9608794-9608813 Msa1139340:intron 20.0%
!! AAAATTGAACAATGTACAAA+TGG - chr7_4:9607231-9607250 None:intergenic 20.0%
!! TTGTACAAAAAAATTAACGT+TGG + chr7_4:9607263-9607282 Msa1139340:intron 20.0%
!!! AATTTCTTTTTCATTTACCA+AGG + chr7_4:9607455-9607474 Msa1139340:intron 20.0%
!! AAATATATATGCAAAGTTAG+AGG - chr7_4:9607947-9607966 None:intergenic 20.0%
!!! TGATATCTTGATATTTTCAA+AGG + chr7_4:9608008-9608027 Msa1139340:intron 20.0%
!! TGAACTTTATCCTTAATAAT+TGG + chr7_4:9608132-9608151 Msa1139340:CDS 20.0%
!! GAACTTTATCCTTAATAATT+GGG + chr7_4:9608133-9608152 Msa1139340:CDS 20.0%
!!! TATTATTTTTGTCGATAGTT+TGG + chr7_4:9608794-9608813 Msa1139340:intron 20.0%
!!! TTTTCAAGTTATTGATCACT+TGG + chr7_4:9607720-9607739 Msa1139340:intron 25.0%
! TCAATTTAGAAAAGGTTTAG+AGG - chr7_4:9607801-9607820 None:intergenic 25.0%
! GTCATTAGTCAATTTAGAAA+AGG - chr7_4:9607809-9607828 None:intergenic 25.0%
! TTTAGAGGTTCAAAGAAAAT+GGG + chr7_4:9608038-9608057 Msa1139340:CDS 25.0%
! ATACTGAATCCCAATTATTA+AGG - chr7_4:9608145-9608164 None:intergenic 25.0%
! TAATAATTGGGATTCAGTAT+TGG + chr7_4:9608145-9608164 Msa1139340:CDS 25.0%
! AAATATTTACCTGCAAGTTT+AGG - chr7_4:9608180-9608199 None:intergenic 25.0%
!!! TGAGATGGATTAATTATTTG+AGG + chr7_4:9608320-9608339 Msa1139340:CDS 25.0%
! AGACTATTGTGAATTACTTA+GGG - chr7_4:9608490-9608509 None:intergenic 25.0%
! AAGACTATTGTGAATTACTT+AGG - chr7_4:9608491-9608510 None:intergenic 25.0%
! TTATATCTCCAAATTTGATG+TGG - chr7_4:9608561-9608580 None:intergenic 25.0%
!! AAGTTGAGAAATATTTCTAC+TGG - chr7_4:9608586-9608605 None:intergenic 25.0%
!! TTTGTTTCACTTCATTTTCA+TGG - chr7_4:9608650-9608669 None:intergenic 25.0%
! GAAAATGAAGTGAAACAAAA+TGG + chr7_4:9608651-9608670 Msa1139340:intron 25.0%
! AAATGGACAATATAACGTTA+TGG + chr7_4:9608668-9608687 Msa1139340:intron 25.0%
! AATGGACAATATAACGTTAT+GGG + chr7_4:9608669-9608688 Msa1139340:intron 25.0%
!!! CATCTTTATTTTGCAGAAAA+TGG + chr7_4:9608848-9608867 Msa1139340:intron 25.0%
! AGTCTAATTTATGCAACAAT+TGG + chr7_4:9608873-9608892 Msa1139340:intron 25.0%
!!! TTTTCAAGTTATTGATCACT+TGG + chr7_4:9607720-9607739 Msa1139340:intron 25.0%
! TCAATTTAGAAAAGGTTTAG+AGG - chr7_4:9607801-9607820 None:intergenic 25.0%
! GTCATTAGTCAATTTAGAAA+AGG - chr7_4:9607809-9607828 None:intergenic 25.0%
! TTTAGAGGTTCAAAGAAAAT+GGG + chr7_4:9608038-9608057 Msa1139340:CDS 25.0%
! ATACTGAATCCCAATTATTA+AGG - chr7_4:9608145-9608164 None:intergenic 25.0%
! TAATAATTGGGATTCAGTAT+TGG + chr7_4:9608145-9608164 Msa1139340:CDS 25.0%
! AAATATTTACCTGCAAGTTT+AGG - chr7_4:9608180-9608199 None:intergenic 25.0%
!!! TGAGATGGATTAATTATTTG+AGG + chr7_4:9608320-9608339 Msa1139340:CDS 25.0%
! AGACTATTGTGAATTACTTA+GGG - chr7_4:9608490-9608509 None:intergenic 25.0%
! AAGACTATTGTGAATTACTT+AGG - chr7_4:9608491-9608510 None:intergenic 25.0%
! TTATATCTCCAAATTTGATG+TGG - chr7_4:9608561-9608580 None:intergenic 25.0%
!! AAGTTGAGAAATATTTCTAC+TGG - chr7_4:9608586-9608605 None:intergenic 25.0%
!! TTTGTTTCACTTCATTTTCA+TGG - chr7_4:9608650-9608669 None:intergenic 25.0%
! GAAAATGAAGTGAAACAAAA+TGG + chr7_4:9608651-9608670 Msa1139340:intron 25.0%
! AAATGGACAATATAACGTTA+TGG + chr7_4:9608668-9608687 Msa1139340:intron 25.0%
! AATGGACAATATAACGTTAT+GGG + chr7_4:9608669-9608688 Msa1139340:intron 25.0%
!!! CATCTTTATTTTGCAGAAAA+TGG + chr7_4:9608848-9608867 Msa1139340:intron 25.0%
! AGTCTAATTTATGCAACAAT+TGG + chr7_4:9608873-9608892 Msa1139340:intron 25.0%
!! AAATTTGCTGATGTGGTTAA+TGG + chr7_4:9607181-9607200 Msa1139340:five_prime_UTR 30.0%
TTAACGTTGGAACTTTATGA+AGG + chr7_4:9607276-9607295 Msa1139340:intron 30.0%
ATACCACATGTATATGAACA+GGG - chr7_4:9607330-9607349 None:intergenic 30.0%
!! GTTTTCCTTACCTTAGTTTT+GGG - chr7_4:9607353-9607372 None:intergenic 30.0%
! TGTTTTCCTTACCTTAGTTT+TGG - chr7_4:9607354-9607373 None:intergenic 30.0%
TGTTTGAGAGAATGTCTATT+TGG + chr7_4:9607379-9607398 Msa1139340:intron 30.0%
TAATGCTAACAGATATGTGT+CGG - chr7_4:9607915-9607934 None:intergenic 30.0%
! ATTTTCAATGTCATCACACT+TGG + chr7_4:9607974-9607993 Msa1139340:intron 30.0%
TTCAAAGGTAAAGACTTTAG+AGG + chr7_4:9608023-9608042 Msa1139340:intron 30.0%
! CTTTAGAGGTTCAAAGAAAA+TGG + chr7_4:9608037-9608056 Msa1139340:CDS 30.0%
! TCTATCAACTAAAAAGCATG+TGG - chr7_4:9608223-9608242 None:intergenic 30.0%
!! AACATGCTGCATATTTTTGA+AGG + chr7_4:9608268-9608287 Msa1139340:intron 30.0%
! ATGGATTAATTATTTGAGGC+CGG + chr7_4:9608324-9608343 Msa1139340:CDS 30.0%
! ATACTTTCTAAAAGCTCATC+AGG + chr7_4:9608426-9608445 Msa1139340:intron 30.0%
ACATAAGGTTTGCATATATG+AGG + chr7_4:9608463-9608482 Msa1139340:intron 30.0%
GACTATTGTGAATTACTTAG+GGG - chr7_4:9608489-9608508 None:intergenic 30.0%
TCCTATCTAAATATGTACAG+GGG - chr7_4:9608527-9608546 None:intergenic 30.0%
CTCCTATCTAAATATGTACA+GGG - chr7_4:9608528-9608547 None:intergenic 30.0%
! TTCACTTCATTTTCATGGTT+TGG - chr7_4:9608645-9608664 None:intergenic 30.0%
! TGATGAATTTTCTTGCTGAT+CGG + chr7_4:9608710-9608729 Msa1139340:intron 30.0%
AATTTATGCAACAATTGGTC+TGG + chr7_4:9608878-9608897 Msa1139340:intron 30.0%
TGCATATTCAAATAGTTCGA+AGG + chr7_4:9608928-9608947 Msa1139340:intron 30.0%
!! AAATTTGCTGATGTGGTTAA+TGG + chr7_4:9607181-9607200 Msa1139340:five_prime_UTR 30.0%
TTAACGTTGGAACTTTATGA+AGG + chr7_4:9607276-9607295 Msa1139340:intron 30.0%
ATACCACATGTATATGAACA+GGG - chr7_4:9607330-9607349 None:intergenic 30.0%
!! GTTTTCCTTACCTTAGTTTT+GGG - chr7_4:9607353-9607372 None:intergenic 30.0%
! TGTTTTCCTTACCTTAGTTT+TGG - chr7_4:9607354-9607373 None:intergenic 30.0%
TGTTTGAGAGAATGTCTATT+TGG + chr7_4:9607379-9607398 Msa1139340:intron 30.0%
TAATGCTAACAGATATGTGT+CGG - chr7_4:9607915-9607934 None:intergenic 30.0%
! ATTTTCAATGTCATCACACT+TGG + chr7_4:9607974-9607993 Msa1139340:intron 30.0%
TTCAAAGGTAAAGACTTTAG+AGG + chr7_4:9608023-9608042 Msa1139340:intron 30.0%
! CTTTAGAGGTTCAAAGAAAA+TGG + chr7_4:9608037-9608056 Msa1139340:CDS 30.0%
! TCTATCAACTAAAAAGCATG+TGG - chr7_4:9608223-9608242 None:intergenic 30.0%
!! AACATGCTGCATATTTTTGA+AGG + chr7_4:9608268-9608287 Msa1139340:intron 30.0%
! ATGGATTAATTATTTGAGGC+CGG + chr7_4:9608324-9608343 Msa1139340:CDS 30.0%
! ATACTTTCTAAAAGCTCATC+AGG + chr7_4:9608426-9608445 Msa1139340:intron 30.0%
ACATAAGGTTTGCATATATG+AGG + chr7_4:9608463-9608482 Msa1139340:intron 30.0%
GACTATTGTGAATTACTTAG+GGG - chr7_4:9608489-9608508 None:intergenic 30.0%
TCCTATCTAAATATGTACAG+GGG - chr7_4:9608527-9608546 None:intergenic 30.0%
CTCCTATCTAAATATGTACA+GGG - chr7_4:9608528-9608547 None:intergenic 30.0%
! TTCACTTCATTTTCATGGTT+TGG - chr7_4:9608645-9608664 None:intergenic 30.0%
! TGATGAATTTTCTTGCTGAT+CGG + chr7_4:9608710-9608729 Msa1139340:intron 30.0%
AATTTATGCAACAATTGGTC+TGG + chr7_4:9608878-9608897 Msa1139340:intron 30.0%
TGCATATTCAAATAGTTCGA+AGG + chr7_4:9608928-9608947 Msa1139340:intron 30.0%
!!! TGTAGCTTTTTTGACAGTAC+TGG + chr7_4:9607156-9607175 Msa1139340:five_prime_UTR 35.0%
!! ACTGGAAAAATTTGCTGATG+TGG + chr7_4:9607174-9607193 Msa1139340:five_prime_UTR 35.0%
TTATGAAGGTTGCTCATGTA+TGG + chr7_4:9607290-9607309 Msa1139340:intron 35.0%
TTTCCCTGTTCATATACATG+TGG + chr7_4:9607324-9607343 Msa1139340:CDS 35.0%
GATACCACATGTATATGAAC+AGG - chr7_4:9607331-9607350 None:intergenic 35.0%
AACACAACTTTCACATTCCT+TGG - chr7_4:9607475-9607494 None:intergenic 35.0%
! AGATAAATGTTGCTTGATGC+AGG + chr7_4:9607545-9607564 Msa1139340:intron 35.0%
! GATAAATGTTGCTTGATGCA+GGG + chr7_4:9607546-9607565 Msa1139340:intron 35.0%
! ATAAATGTTGCTTGATGCAG+GGG + chr7_4:9607547-9607566 Msa1139340:intron 35.0%
TTGACAAGAAGTTTCAAGAG+TGG + chr7_4:9607628-9607647 Msa1139340:CDS 35.0%
!!! GGGATTTGGCAATTTTTTAC+TGG + chr7_4:9607664-9607683 Msa1139340:CDS 35.0%
CTAAATTGACTAATGACGCA+AGG + chr7_4:9607812-9607831 Msa1139340:intron 35.0%
AAGACAACCATGTTGTGATA+AGG + chr7_4:9608061-9608080 Msa1139340:CDS 35.0%
AAACCAACCTTATCACAACA+TGG - chr7_4:9608071-9608090 None:intergenic 35.0%
TGATCTTCTTCAATAGTCCA+TGG - chr7_4:9608104-9608123 None:intergenic 35.0%
!! TTTGAAGGTCTTCTAAGATG+TGG + chr7_4:9608283-9608302 Msa1139340:intron 35.0%
GAAAGAGTTGTAGATTGAGA+TGG + chr7_4:9608305-9608324 Msa1139340:CDS 35.0%
!! TGGCTTTATTGAAATGGAAG+AGG + chr7_4:9608360-9608379 Msa1139340:CDS 35.0%
ACCCCTGTACATATTTAGAT+AGG + chr7_4:9608523-9608542 Msa1139340:intron 35.0%
CCTCCTATCTAAATATGTAC+AGG - chr7_4:9608529-9608548 None:intergenic 35.0%
CCTGTACATATTTAGATAGG+AGG + chr7_4:9608526-9608545 Msa1139340:intron 35.0%
CTAAGTAGCCACATCAAATT+TGG + chr7_4:9608550-9608569 Msa1139340:intron 35.0%
!!! TGTAGCTTTTTTGACAGTAC+TGG + chr7_4:9607156-9607175 Msa1139340:five_prime_UTR 35.0%
!! ACTGGAAAAATTTGCTGATG+TGG + chr7_4:9607174-9607193 Msa1139340:five_prime_UTR 35.0%
TTATGAAGGTTGCTCATGTA+TGG + chr7_4:9607290-9607309 Msa1139340:intron 35.0%
TTTCCCTGTTCATATACATG+TGG + chr7_4:9607324-9607343 Msa1139340:CDS 35.0%
GATACCACATGTATATGAAC+AGG - chr7_4:9607331-9607350 None:intergenic 35.0%
AACACAACTTTCACATTCCT+TGG - chr7_4:9607475-9607494 None:intergenic 35.0%
! AGATAAATGTTGCTTGATGC+AGG + chr7_4:9607545-9607564 Msa1139340:intron 35.0%
! GATAAATGTTGCTTGATGCA+GGG + chr7_4:9607546-9607565 Msa1139340:intron 35.0%
! ATAAATGTTGCTTGATGCAG+GGG + chr7_4:9607547-9607566 Msa1139340:intron 35.0%
TTGACAAGAAGTTTCAAGAG+TGG + chr7_4:9607628-9607647 Msa1139340:CDS 35.0%
!!! GGGATTTGGCAATTTTTTAC+TGG + chr7_4:9607664-9607683 Msa1139340:CDS 35.0%
CTAAATTGACTAATGACGCA+AGG + chr7_4:9607812-9607831 Msa1139340:intron 35.0%
AAGACAACCATGTTGTGATA+AGG + chr7_4:9608061-9608080 Msa1139340:CDS 35.0%
AAACCAACCTTATCACAACA+TGG - chr7_4:9608071-9608090 None:intergenic 35.0%
TGATCTTCTTCAATAGTCCA+TGG - chr7_4:9608104-9608123 None:intergenic 35.0%
!! TTTGAAGGTCTTCTAAGATG+TGG + chr7_4:9608283-9608302 Msa1139340:intron 35.0%
GAAAGAGTTGTAGATTGAGA+TGG + chr7_4:9608305-9608324 Msa1139340:CDS 35.0%
!! TGGCTTTATTGAAATGGAAG+AGG + chr7_4:9608360-9608379 Msa1139340:CDS 35.0%
ACCCCTGTACATATTTAGAT+AGG + chr7_4:9608523-9608542 Msa1139340:intron 35.0%
CCTCCTATCTAAATATGTAC+AGG - chr7_4:9608529-9608548 None:intergenic 35.0%
CCTGTACATATTTAGATAGG+AGG + chr7_4:9608526-9608545 Msa1139340:intron 35.0%
CTAAGTAGCCACATCAAATT+TGG + chr7_4:9608550-9608569 Msa1139340:intron 35.0%
TTGCTGATGTGGTTAATGGA+TGG + chr7_4:9607185-9607204 Msa1139340:five_prime_UTR 40.0%
CATGTGGTATCCCAAAACTA+AGG + chr7_4:9607340-9607359 Msa1139340:CDS 40.0%
GGTATCCCAAAACTAAGGTA+AGG + chr7_4:9607345-9607364 Msa1139340:intron 40.0%
TTTCAAGAGTGGAGAGTTAG+AGG + chr7_4:9607639-9607658 Msa1139340:CDS 40.0%
TGGCAAAATTGCACTGAGTT+GGG + chr7_4:9607684-9607703 Msa1139340:CDS 40.0%
GCTCAATCCAAGAGATTATC+AGG + chr7_4:9607745-9607764 Msa1139340:intron 40.0%
CGATTTGCCTGATAATCTCT+TGG - chr7_4:9607755-9607774 None:intergenic 40.0%
! TAACAGATATGTGTCGGTGT+CGG - chr7_4:9607909-9607928 None:intergenic 40.0%
CAACCATGTTGTGATAAGGT+TGG + chr7_4:9608065-9608084 Msa1139340:CDS 40.0%
!! GATAAGGTTGGTTTGAAGAG+AGG + chr7_4:9608077-9608096 Msa1139340:CDS 40.0%
! TGGGATTCAGTATTGGAGAA+TGG + chr7_4:9608152-9608171 Msa1139340:CDS 40.0%
AGAATGGTTCCTAAACTTGC+AGG + chr7_4:9608168-9608187 Msa1139340:intron 40.0%
CAATAAAGCCACCTCTCTTA+AGG - chr7_4:9608351-9608370 None:intergenic 40.0%
!! GAGAGGTGGCTTTATTGAAA+TGG + chr7_4:9608354-9608373 Msa1139340:CDS 40.0%
TGTTGTACCTGTTACCAAGA+CGG - chr7_4:9608407-9608426 None:intergenic 40.0%
GCAAACCTTATGTTATGCTC+AGG - chr7_4:9608456-9608475 None:intergenic 40.0%
! GAATTTTCTTGCTGATCGGA+AGG + chr7_4:9608714-9608733 Msa1139340:intron 40.0%
TTGCTGATGTGGTTAATGGA+TGG + chr7_4:9607185-9607204 Msa1139340:five_prime_UTR 40.0%
CATGTGGTATCCCAAAACTA+AGG + chr7_4:9607340-9607359 Msa1139340:CDS 40.0%
GGTATCCCAAAACTAAGGTA+AGG + chr7_4:9607345-9607364 Msa1139340:intron 40.0%
TTTCAAGAGTGGAGAGTTAG+AGG + chr7_4:9607639-9607658 Msa1139340:CDS 40.0%
TGGCAAAATTGCACTGAGTT+GGG + chr7_4:9607684-9607703 Msa1139340:CDS 40.0%
GCTCAATCCAAGAGATTATC+AGG + chr7_4:9607745-9607764 Msa1139340:intron 40.0%
CGATTTGCCTGATAATCTCT+TGG - chr7_4:9607755-9607774 None:intergenic 40.0%
! TAACAGATATGTGTCGGTGT+CGG - chr7_4:9607909-9607928 None:intergenic 40.0%
CAACCATGTTGTGATAAGGT+TGG + chr7_4:9608065-9608084 Msa1139340:CDS 40.0%
!! GATAAGGTTGGTTTGAAGAG+AGG + chr7_4:9608077-9608096 Msa1139340:CDS 40.0%
! TGGGATTCAGTATTGGAGAA+TGG + chr7_4:9608152-9608171 Msa1139340:CDS 40.0%
AGAATGGTTCCTAAACTTGC+AGG + chr7_4:9608168-9608187 Msa1139340:intron 40.0%
CAATAAAGCCACCTCTCTTA+AGG - chr7_4:9608351-9608370 None:intergenic 40.0%
!! GAGAGGTGGCTTTATTGAAA+TGG + chr7_4:9608354-9608373 Msa1139340:CDS 40.0%
TGTTGTACCTGTTACCAAGA+CGG - chr7_4:9608407-9608426 None:intergenic 40.0%
GCAAACCTTATGTTATGCTC+AGG - chr7_4:9608456-9608475 None:intergenic 40.0%
! GAATTTTCTTGCTGATCGGA+AGG + chr7_4:9608714-9608733 Msa1139340:intron 40.0%
AAGAGTGGAGAGTTAGAGGA+TGG + chr7_4:9607643-9607662 Msa1139340:CDS 45.0%
AGAGTGGAGAGTTAGAGGAT+GGG + chr7_4:9607644-9607663 Msa1139340:CDS 45.0%
GAGAGTTAGAGGATGGGATT+TGG + chr7_4:9607650-9607669 Msa1139340:CDS 45.0%
CTGGCAAAATTGCACTGAGT+TGG + chr7_4:9607683-9607702 Msa1139340:CDS 45.0%
GGCAAAATTGCACTGAGTTG+GGG + chr7_4:9607685-9607704 Msa1139340:CDS 45.0%
ATCAGGCAAATCGTCCAAGA+AGG + chr7_4:9607762-9607781 Msa1139340:intron 45.0%
GCAAGGTCACCTATGAGATT+AGG + chr7_4:9607829-9607848 Msa1139340:intron 45.0%
GGAGACACACCTAATCTCAT+AGG - chr7_4:9607841-9607860 None:intergenic 45.0%
! TTGGTTTGAAGAGAGGACCA+TGG + chr7_4:9608084-9608103 Msa1139340:CDS 45.0%
ATACAACTACATGCCCGTCT+TGG + chr7_4:9608390-9608409 Msa1139340:CDS 45.0%
GTTGTACCTGTTACCAAGAC+GGG - chr7_4:9608406-9608425 None:intergenic 45.0%
GTCTGCCTGAGCATAACATA+AGG + chr7_4:9608448-9608467 Msa1139340:intron 45.0%
ACTCATGCTCAATGCAAGCT+TGG + chr7_4:9608751-9608770 Msa1139340:intron 45.0%
! GCAACAATTGGTCTGGTTCA+AGG + chr7_4:9608885-9608904 Msa1139340:intron 45.0%
! GTCTGGTTCAAGGTTGCTTT+GGG + chr7_4:9608895-9608914 Msa1139340:intron 45.0%
AAGAGTGGAGAGTTAGAGGA+TGG + chr7_4:9607643-9607662 Msa1139340:CDS 45.0%
AGAGTGGAGAGTTAGAGGAT+GGG + chr7_4:9607644-9607663 Msa1139340:CDS 45.0%
GAGAGTTAGAGGATGGGATT+TGG + chr7_4:9607650-9607669 Msa1139340:CDS 45.0%
CTGGCAAAATTGCACTGAGT+TGG + chr7_4:9607683-9607702 Msa1139340:CDS 45.0%
GGCAAAATTGCACTGAGTTG+GGG + chr7_4:9607685-9607704 Msa1139340:CDS 45.0%
ATCAGGCAAATCGTCCAAGA+AGG + chr7_4:9607762-9607781 Msa1139340:intron 45.0%
GCAAGGTCACCTATGAGATT+AGG + chr7_4:9607829-9607848 Msa1139340:intron 45.0%
GGAGACACACCTAATCTCAT+AGG - chr7_4:9607841-9607860 None:intergenic 45.0%
! TTGGTTTGAAGAGAGGACCA+TGG + chr7_4:9608084-9608103 Msa1139340:CDS 45.0%
ATACAACTACATGCCCGTCT+TGG + chr7_4:9608390-9608409 Msa1139340:CDS 45.0%
GTTGTACCTGTTACCAAGAC+GGG - chr7_4:9608406-9608425 None:intergenic 45.0%
GTCTGCCTGAGCATAACATA+AGG + chr7_4:9608448-9608467 Msa1139340:intron 45.0%
ACTCATGCTCAATGCAAGCT+TGG + chr7_4:9608751-9608770 Msa1139340:intron 45.0%
! GCAACAATTGGTCTGGTTCA+AGG + chr7_4:9608885-9608904 Msa1139340:intron 45.0%
! GTCTGGTTCAAGGTTGCTTT+GGG + chr7_4:9608895-9608914 Msa1139340:intron 45.0%
GTTGCTGCAACTCACCTTCT+TGG - chr7_4:9607779-9607798 None:intergenic 50.0%
AAGCCACCTCTCTTAAGGTC+CGG - chr7_4:9608346-9608365 None:intergenic 50.0%
! TACATGCCCGTCTTGGTAAC+AGG + chr7_4:9608397-9608416 Msa1139340:CDS 50.0%
TTGCTGATCGGAAGGATGCA+GGG + chr7_4:9608722-9608741 Msa1139340:intron 50.0%
CATGCTCAATGCAAGCTTGG+AGG + chr7_4:9608754-9608773 Msa1139340:intron 50.0%
! GGTCTGGTTCAAGGTTGCTT+TGG + chr7_4:9608894-9608913 Msa1139340:intron 50.0%
GTTGCTGCAACTCACCTTCT+TGG - chr7_4:9607779-9607798 None:intergenic 50.0%
AAGCCACCTCTCTTAAGGTC+CGG - chr7_4:9608346-9608365 None:intergenic 50.0%
! TACATGCCCGTCTTGGTAAC+AGG + chr7_4:9608397-9608416 Msa1139340:CDS 50.0%
TTGCTGATCGGAAGGATGCA+GGG + chr7_4:9608722-9608741 Msa1139340:intron 50.0%
CATGCTCAATGCAAGCTTGG+AGG + chr7_4:9608754-9608773 Msa1139340:intron 50.0%
! GGTCTGGTTCAAGGTTGCTT+TGG + chr7_4:9608894-9608913 Msa1139340:intron 50.0%
CACCAACGCGTGTGAAGTGT+CGG - chr7_4:9607868-9607887 None:intergenic 55.0%
!!! TGTCGGTGTCGGTGTCGTTT+TGG - chr7_4:9607898-9607917 None:intergenic 55.0%
TTGAGGCCGGACCTTAAGAG+AGG + chr7_4:9608337-9608356 Msa1139340:CDS 55.0%
CTTGCTGATCGGAAGGATGC+AGG + chr7_4:9608721-9608740 Msa1139340:intron 55.0%
CACCAACGCGTGTGAAGTGT+CGG - chr7_4:9607868-9607887 None:intergenic 55.0%
!!! TGTCGGTGTCGGTGTCGTTT+TGG - chr7_4:9607898-9607917 None:intergenic 55.0%
TTGAGGCCGGACCTTAAGAG+AGG + chr7_4:9608337-9608356 Msa1139340:CDS 55.0%
CTTGCTGATCGGAAGGATGC+AGG + chr7_4:9608721-9608740 Msa1139340:intron 55.0%
!! CGCGTGTGAAGTGTCGGACA+CGG - chr7_4:9607862-9607881 None:intergenic 60.0%
GTCCGACACTTCACACGCGT+TGG + chr7_4:9607863-9607882 Msa1139340:intron 60.0%
AGGCCGGACCTTAAGAGAGG+TGG + chr7_4:9608340-9608359 Msa1139340:CDS 60.0%
!! CGCGTGTGAAGTGTCGGACA+CGG - chr7_4:9607862-9607881 None:intergenic 60.0%
GTCCGACACTTCACACGCGT+TGG + chr7_4:9607863-9607882 Msa1139340:intron 60.0%
AGGCCGGACCTTAAGAGAGG+TGG + chr7_4:9608340-9608359 Msa1139340:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 9607150 9609014 9607150 ID=Msa1139340;Name=Msa1139340
chr7_4 mRNA 9607150 9609014 9607150 ID=Msa1139340-mRNA-1;Parent=Msa1139340;Name=Msa1139340-mRNA-1;_AED=0.09;_eAED=0.22;_QI=64|0|0|0.83|0.2|0.16|6|0|165
chr7_4 exon 9607150 9607206 9607150 ID=Msa1139340-mRNA-1:exon:2462;Parent=Msa1139340-mRNA-1
chr7_4 exon 9607298 9607361 9607298 ID=Msa1139340-mRNA-1:exon:2463;Parent=Msa1139340-mRNA-1
chr7_4 exon 9607567 9607726 9607567 ID=Msa1139340-mRNA-1:exon:2464;Parent=Msa1139340-mRNA-1
chr7_4 exon 9608030 9608173 9608030 ID=Msa1139340-mRNA-1:exon:2465;Parent=Msa1139340-mRNA-1
chr7_4 exon 9608290 9608418 9608290 ID=Msa1139340-mRNA-1:exon:2466;Parent=Msa1139340-mRNA-1
chr7_4 exon 9609010 9609014 9609010 ID=Msa1139340-mRNA-1:exon:2467;Parent=Msa1139340-mRNA-1
chr7_4 five_prime_UTR 9607150 9607206 9607150 ID=Msa1139340-mRNA-1:five_prime_utr;Parent=Msa1139340-mRNA-1
chr7_4 five_prime_UTR 9607298 9607304 9607298 ID=Msa1139340-mRNA-1:five_prime_utr;Parent=Msa1139340-mRNA-1
chr7_4 CDS 9607305 9607361 9607305 ID=Msa1139340-mRNA-1:cds;Parent=Msa1139340-mRNA-1
chr7_4 CDS 9607567 9607726 9607567 ID=Msa1139340-mRNA-1:cds;Parent=Msa1139340-mRNA-1
chr7_4 CDS 9608030 9608173 9608030 ID=Msa1139340-mRNA-1:cds;Parent=Msa1139340-mRNA-1
chr7_4 CDS 9608290 9608418 9608290 ID=Msa1139340-mRNA-1:cds;Parent=Msa1139340-mRNA-1
chr7_4 CDS 9609010 9609014 9609010 ID=Msa1139340-mRNA-1:cds;Parent=Msa1139340-mRNA-1
Gene Sequence

>Msa1139340

ATGTATGGAGAATTGAAGCTTTCCCTGTTCATATACATGTGGTATCCCAAAACTAAGGGGACAATATATGTTTATAATAAAGTGTTGAGATCATATGTATCTAAGAATGAAATTGACTTTGACAAGAAGTTTCAAGAGTGGAGAGTTAGAGGATGGGATTTGGCAATTTTTTACTGGCAAAATTGCACTGAGTTGGGGCAAACTGCATTTTTTTCAAGTAAAGACTTTAGAGGTTCAAAGAAAATGGGAAGACAACCATGTTGTGATAAGGTTGGTTTGAAGAGAGGACCATGGACTATTGAAGAAGATCACAAGCTTGTGAACTTTATCCTTAATAATTGGGATTCAGTATTGGAGAATGGTCTTCTAAGATGTGGAAAGAGTTGTAGATTGAGATGGATTAATTATTTGAGGCCGGACCTTAAGAGAGGTGGCTTTATTGAAATGGAAGAGGATCAAATATACAACTACATGCCCGTCTTGGTAACAGATATC
Protein sequence

>Msa1139340

MYGELKLSLFIYMWYPKTKGTIYVYNKVLRSYVSKNEIDFDKKFQEWRVRGWDLAIFYWQNCTELGQTAFFSSKDFRGSKKMGRQPCCDKVGLKRGPWTIEEDHKLVNFILNNWDSVLENGLLRCGKSCRLRWINYLRPDLKRGGFIEMEEDQIYNYMPVLVTDI