AlfalfaGEDB | Msa1139740

M. sativa cultivar zhongmu-4 / Msa1139740

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1139740	PNX75333.1	99.310	145	1	0	1	145	35	179	3.08e-96	303

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1139740	sp\|Q9SZL8\|FRS5_ARATH	31.579	152	94	4	2	145	119	268	7.39e-20	88.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1139740	A0A2K3L9Y4	99.310	145	1	0	1	145	35	179	1.47e-96	303

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TFs/TRs:

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Gene ID	Type	Classification
Msa1139740	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1139740	MtrunA17_Chr5g0448761	32.680	153	94	3	2	146	106	257	1.56e-23	95.9
Msa1139740	MtrunA17_Chr7g0258861	28.387	155	104	4	2	150	55	208	3.88e-15	70.9
Msa1139740	MtrunA17_Chr1g0198761	29.814	161	97	5	2	150	99	255	2.22e-14	69.3
Msa1139740	MtrunA17_Chr1g0202341	32.812	128	81	3	26	150	123	248	5.84e-13	65.5
Msa1139740	MtrunA17_Chr2g0324011	26.452	155	106	3	2	150	55	207	8.67e-12	62.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1139740	AT4G38180.1	31.579	152	94	4	2	145	119	268	7.51e-21	88.6

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Find 26 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTGCTACAATGTTTCA+GGG	0.533512	7_4:-10414915	Msa1139740:CDS
AAGCAGGGAAGAGAAGTAAA+TGG	0.304863	7_4:-10415079	Msa1139740:CDS
AATGGTTAGTCCTAAGAGTG+TGG	0.677899	7_4:-10415021	Msa1139740:CDS
AGAAGAAGAAATCTTGATGT+GGG	0.546130	7_4:-10414840	Msa1139740:CDS
AGCAGGGAAGAGAAGTAAAT+GGG	0.489503	7_4:-10415078	Msa1139740:CDS
ATAAACAATGTTCATAATCA+TGG	0.455589	7_4:-10415044	Msa1139740:CDS
ATGAAGAAGGAGTACCTACA+GGG	0.636491	7_4:-10414938	Msa1139740:CDS
ATGTTTGTATGCGCTAATGA+AGG	0.600535	7_4:-10415191	Msa1139740:CDS
ATTGTAGCAACTTTCCCTGT+AGG	0.569258	7_4:+10414924	None:intergenic
CAATGTTCATAATCATGGAA+TGG	0.563943	7_4:-10415039	Msa1139740:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAGGGTGAAAATGAAGAA+GGG	-	chr7_4:10414780-10414799	Msa1139740:CDS	30.0%
CAATGTTCATAATCATGGAA+TGG	-	chr7_4:10414898-10414917	Msa1139740:CDS	30.0%
AAAGTTGCTACAATGTTTCA+GGG	-	chr7_4:10415022-10415041	Msa1139740:CDS	30.0%
AGAAGAAGAAATCTTGATGT+GGG	-	chr7_4:10415097-10415116	Msa1139740:CDS	30.0%
ATGTTTGTATGCGCTAATGA+AGG	-	chr7_4:10414746-10414765	Msa1139740:CDS	35.0%
GTAAAGGGTGAAAATGAAGA+AGG	-	chr7_4:10414779-10414798	Msa1139740:CDS	35.0%
TGCTTTACAATCAGTTCTTG+AGG	+	chr7_4:10414822-10414841	None:intergenic	35.0%
TCACTTACTGTTTCAAAAGC+AGG	-	chr7_4:10414842-10414861	Msa1139740:CDS	35.0%
CACTTACTGTTTCAAAAGCA+GGG	-	chr7_4:10414843-10414862	Msa1139740:CDS	35.0%
GTTGAGAAGTTTGATGAAGA+AGG	-	chr7_4:10414986-10415005	Msa1139740:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	10414746	10415213	10414746	ID=Msa1139740;Name=Msa1139740
chr7_4	mRNA	10414746	10415213	10414746	ID=Msa1139740-mRNA-1;Parent=Msa1139740;Name=Msa1139740-mRNA-1;_AED=0.37;_eAED=0.39;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|155
chr7_4	exon	10414746	10415213	10414746	ID=Msa1139740-mRNA-1:exon:2569;Parent=Msa1139740-mRNA-1
chr7_4	CDS	10414746	10415213	10414746	ID=Msa1139740-mRNA-1:cds;Parent=Msa1139740-mRNA-1

Gene Sequence

>Msa1139740

ATGTTTGTATGCGCTAATGAAGGTACACATATAGTAAAGGGTGAAAATGAAGAAGGGAAGAGAAAGCGTTCAACCTCAAGAACTGATTGTAAAGCATCACTTACTGTTTCAAAAGCAGGGAAGAGAAGTAAATGGGTTATAAAAAGCATAAACAATGTTCATAATCATGGAATGGTTAGTCCTAAGAGTGTGGCCTATCTGCGGTCTCATAAGAAAATGACTGCAGCAACTAAAAGCCTCGTTGAGAAGTTTGATGAAGAAGGAGTACCTACAGGGAAAGTTGCTACAATGTTTCAGGGTGAAGATAATGCTTTTTCTAGTCGGGATTGCTGGAACCATCTTAGAAATTTCAGAAGAAGAAATCTTGATGTGGGAGATGCTCAAGCTGTCTTTAAATTTTGCAAGAAAAAACAAGTTGAGAATCCCAATTTTTTTATGCAATACAATGTGATGATGAAGATAGAATGA

Protein sequence

>Msa1139740

MFVCANEGTHIVKGENEEGKRKRSTSRTDCKASLTVSKAGKRSKWVIKSINNVHNHGMVSPKSVAYLRSHKKMTAATKSLVEKFDEEGVPTGKVATMFQGEDNAFSSRDCWNHLRNFRRRNLDVGDAQAVFKFCKKKQVENPNFFMQYNVMMKIE*