AlfalfaGEDB | Msa1140020

M. sativa cultivar zhongmu-4 / Msa1140020

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1140020	XP_013447750.1	97.071	751	20	1	1	751	1	749	0.0	1435

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1140020	sp\|Q9C660\|PEK10_ARATH	65.068	438	145	5	297	732	330	761	0.0	605

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1140020	A0A072U7M3	97.071	751	20	1	1	751	1	749	0.0	1435

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1140020	MtrunA17_Chr7g0221191	97.071	751	20	1	1	751	1	749	0.0	1435
Msa1140020	MtrunA17_Chr0c01g0489481	63.864	440	150	5	281	718	218	650	0.0	553
Msa1140020	MtrunA17_Chr5g0413511	63.662	355	126	1	385	739	47	398	2.31e-170	495
Msa1140020	MtrunA17_Chr6g0485761	59.626	374	140	2	378	743	276	646	3.38e-160	479
Msa1140020	MtrunA17_Chr3g0144481	59.259	351	129	4	381	717	73	423	2.42e-149	444
Msa1140020	MtrunA17_Chr8g0373501	58.112	339	130	3	385	712	325	662	1.02e-144	439
Msa1140020	MtrunA17_Chr6g0485721	57.188	320	135	1	382	701	83	400	4.37e-129	390
Msa1140020	MtrunA17_Chr8g0342071	47.287	387	178	10	385	748	438	821	7.62e-102	332
Msa1140020	MtrunA17_Chr7g0262521	51.562	320	146	4	385	701	334	647	9.00e-102	329
Msa1140020	MtrunA17_Chr8g0389251	51.557	289	135	3	384	671	391	675	9.80e-101	325

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1140020	AT1G26150.1	65.068	438	145	5	297	732	330	761	0.0	605
Msa1140020	AT1G52290.1	57.835	351	134	3	370	711	121	466	3.39e-154	458
Msa1140020	AT4G34440.2	49.571	466	189	7	316	739	208	669	1.56e-150	454
Msa1140020	AT4G34440.1	49.571	466	189	7	316	739	208	669	1.56e-150	454
Msa1140020	AT3G24540.1	63.462	312	114	0	382	693	168	479	1.84e-150	447
Msa1140020	AT1G26150.2	66.667	318	102	3	297	612	330	645	1.60e-149	451
Msa1140020	AT1G70450.1	62.195	328	115	2	378	700	30	353	5.40e-147	436
Msa1140020	AT3G18810.1	57.971	345	136	2	381	717	321	664	5.65e-135	415
Msa1140020	AT1G49270.1	59.322	354	133	4	372	717	313	663	1.64e-133	411
Msa1140020	AT4G32710.1	55.291	378	156	5	357	725	350	723	7.54e-131	405

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Find 269 sgRNAs with CRISPR-Local

Find 465 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGCAGCGCCAGATGA+TGG	0.493446	7_4:+11207361	None:intergenic
AAAATGCACCCGTTCTGAAT+TGG	0.403845	7_4:-11205044	Msa1140020:CDS
AAACAACTTAAAATTGGTGG+TGG	0.581592	7_4:-11205465	Msa1140020:CDS
AAAGGAGGAACTGAGGGAGG+TGG	0.619795	7_4:+11207295	None:intergenic
AACAAAACAGTTGCTGCTGG+TGG	0.615889	7_4:-11206668	Msa1140020:CDS
AACTACTTTGAGACTCATTA+AGG	0.335919	7_4:+11202133	None:intergenic
AACTGAGGAATGACGCACAC+AGG	0.583824	7_4:+11202433	None:intergenic
AACTGGAAGCAGAACTATCT+TGG	0.439996	7_4:+11202157	None:intergenic
AAGATATTACTGTGAATCAC+CGG	0.630521	7_4:+11202002	None:intergenic
AAGATGTGCAAAAGAGAACG+TGG	0.676059	7_4:+11208091	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCACATACAGTGTGAAAA+AGG	+	chr7_4:11201783-11201802	None:intergenic	30.0%
AAAAACCAATATGGTGATAG+TGG	+	chr7_4:11201919-11201938	None:intergenic	30.0%
GATTTCAGATCAACTCAATT+GGG	+	chr7_4:11202282-11202301	None:intergenic	30.0%
AGATTTCAGATCAACTCAAT+TGG	+	chr7_4:11202283-11202302	None:intergenic	30.0%
TGTTATTGTTGTGGAAGATT+TGG	-	chr7_4:11202516-11202535	Msa1140020:CDS	30.0%
TGGTGTATTAGTTGTTTGAT+TGG	+	chr7_4:11202643-11202662	None:intergenic	30.0%
ATATGTACGGAAGAAAAAGA+AGG	-	chr7_4:11203496-11203515	Msa1140020:intron	30.0%
TATGTACGGAAGAAAAAGAA+GGG	-	chr7_4:11203497-11203516	Msa1140020:intron	30.0%
CTATGAGTATGAATACTGAA+GGG	-	chr7_4:11203663-11203682	Msa1140020:intron	30.0%
TTATCTGCATTATGCTTGAT+TGG	-	chr7_4:11204109-11204128	Msa1140020:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	11201750	11208227	11201750	ID=Msa1140020;Name=Msa1140020
chr7_4	mRNA	11201750	11208227	11201750	ID=Msa1140020-mRNA-1;Parent=Msa1140020;Name=Msa1140020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=561\|1\|1\|1\|0.87\|0.77\|9\|303\|751
chr7_4	exon	11201750	11202313	11201750	ID=Msa1140020-mRNA-1:exon:2663;Parent=Msa1140020-mRNA-1
chr7_4	exon	11202412	11202573	11202412	ID=Msa1140020-mRNA-1:exon:2662;Parent=Msa1140020-mRNA-1
chr7_4	exon	11203095	11203242	11203095	ID=Msa1140020-mRNA-1:exon:2661;Parent=Msa1140020-mRNA-1
chr7_4	exon	11204392	11204468	11204392	ID=Msa1140020-mRNA-1:exon:2660;Parent=Msa1140020-mRNA-1
chr7_4	exon	11204622	11204692	11204622	ID=Msa1140020-mRNA-1:exon:2659;Parent=Msa1140020-mRNA-1
chr7_4	exon	11204983	11205069	11204983	ID=Msa1140020-mRNA-1:exon:2658;Parent=Msa1140020-mRNA-1
chr7_4	exon	11205310	11205726	11205310	ID=Msa1140020-mRNA-1:exon:2657;Parent=Msa1140020-mRNA-1
chr7_4	exon	11206399	11207753	11206399	ID=Msa1140020-mRNA-1:exon:2656;Parent=Msa1140020-mRNA-1
chr7_4	exon	11207989	11208227	11207989	ID=Msa1140020-mRNA-1:exon:2655;Parent=Msa1140020-mRNA-1
chr7_4	five_prime_UTR	11207989	11208227	11207989	ID=Msa1140020-mRNA-1:five_prime_utr;Parent=Msa1140020-mRNA-1
chr7_4	five_prime_UTR	11207432	11207753	11207432	ID=Msa1140020-mRNA-1:five_prime_utr;Parent=Msa1140020-mRNA-1
chr7_4	CDS	11206399	11207431	11206399	ID=Msa1140020-mRNA-1:cds;Parent=Msa1140020-mRNA-1
chr7_4	CDS	11205310	11205726	11205310	ID=Msa1140020-mRNA-1:cds;Parent=Msa1140020-mRNA-1
chr7_4	CDS	11204983	11205069	11204983	ID=Msa1140020-mRNA-1:cds;Parent=Msa1140020-mRNA-1
chr7_4	CDS	11204622	11204692	11204622	ID=Msa1140020-mRNA-1:cds;Parent=Msa1140020-mRNA-1
chr7_4	CDS	11204392	11204468	11204392	ID=Msa1140020-mRNA-1:cds;Parent=Msa1140020-mRNA-1
chr7_4	CDS	11203095	11203242	11203095	ID=Msa1140020-mRNA-1:cds;Parent=Msa1140020-mRNA-1
chr7_4	CDS	11202412	11202573	11202412	ID=Msa1140020-mRNA-1:cds;Parent=Msa1140020-mRNA-1
chr7_4	CDS	11202053	11202313	11202053	ID=Msa1140020-mRNA-1:cds;Parent=Msa1140020-mRNA-1
chr7_4	three_prime_UTR	11201750	11202052	11201750	ID=Msa1140020-mRNA-1:three_prime_utr;Parent=Msa1140020-mRNA-1

Gene Sequence

>Msa1140020

ATGGCTACAATCCCTCTTTCTCCAAATGGTTCTCCTATTGCATTGCCTCCATCATCTGGCGCTGCTGTTTTACCACCTACCACTTCTTCTCAGTCCAATCAAACAACTAATACACCACCTCCCTCAGTTCCTCCTTTGTCGACGTCAGTGCCAGTAACTCCTCCTCCTTCACCATCTCTTTCTCCTCCTCCACTGTTGACCACACCGCCGCCAGCATCTCCACCACCAGCATCATCACCTCCACCAATTGTAACATCACCACCTCCTGCATCACCAGCTCCACCAGTTGTAACATCACCACCTCCTACACCAGCTGCTACCGCCCCTCCTCCAGCTGAAACTTCACCTTCCATTCCTAATTTGTCTCCACCACCTCCATCAGCTGGTTCCCCTCCTCCTCAACCATCAAAGCCACCTCCTTCTGAATCAGTTTCGCCGTCTCCTCCTCCTCCGGCACCAAAGCCACGATCTACCAAACCTCCTCCTCCTACACCACAAGCAAAGCCACCAAAAAGTAACACTCCTTCACCTCCTTCACATGATGCACCTCCTCCATCAGTTTCTCATACCCCTCCTTCCCCTTCTACCGATGTTCCACCACCGTCCACTTCTACTGTTGTTCCACCTCCATCTACATTGCCATCAACTCCTCCTTCAGTCCCTTCAGAATCTGCACCACCACGTGCAGTCCCTTCAGGATCTGCAGCACCTCCTGCAGCCTCTTTGCCTCGTCCTCCTAGGAACAAAACAGTTGCTGCTGGTGGTCCAACTGTGTCGTTGCCATCTATTCCAGCTGAGAAACCAACTGCTAGACCAACTGTTGATGGCTCTGGTAATGCAGCCACAAGCAATGCACCTTCAAATTCAGGAGGGTTAAATACCGGAGGAGCTGTTGCTATTGGAGTCGTTGTTAGTTTAGTTGTCATCAGCCTTCTTGTCATGGCTGTGTTATATGTACGGAAGAAAAAGAAGGGAAAAGGACCGATAGCTGATTATGCTGCACCTTCCCCATTTACCTCGTCTCACAATTCAGGTACCTTGTTCTTGAAGCCTCAGCCTCAGTCTCCAGCCAATTTTATAGGGAGTGGCAATGGTAGTGAATTTGTGTATTCACCATCAGAACCAGGTGGTGTAAATAGTTCAAGATCATGGTTCACATATGAAGAGCTTATCCAAGCTACAAACGGATTTTCAGAACAGAATATGTTGGGAGAAGGTGGTTTTGGTTGTGTCTACAAAGGTTTGCTCATAGATGGGAGAGAAGTAGCTGTGAAACAACTTAAAATTGGTGGTGGACAAGGGGAACGTGAATTCAGAGCAGAAGTTGAGACTATTAGTCGAGTACATCATCGTCATCTAGTTTCTTTGGTTGGTTACTGTATATCTGAACATCAAAGATTGCTTGTCTACGACTATGTTCCCAACAATACTCTTCATTATCATCTACACGATGAAAATGCACCCGTTCTGAATTGGCCAATCAGAGTTAAGGTTGCCGCTGGTGCAGCTCGTGGAATAGCTTACCTACATGAAGATTGCCATCCACGCATTATTCATCGAGATATTAAGTCATCAAACATCCTTCTCGATCAAAACTTTGAAGCTCTTGTTTCAGATTTTGGGCTTGCGAAATTAACTTTGGATTCAAACACACACGTTACTACACGTGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCAACAAGTGGGAAATTGACTGATAAGTCTGATGTATATTCCTACGGTGTTGTACTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCCTCTCAGCCAATTGGTGATGAGAGCTTGGTTGAATGGGCTCGGCCTCTGTTAATGGAAGCGCTCAATAGCGAGGACTTTGAAACTTTAGCGGATCCAAGACTAGGAAAGAACTACAATAGAAACGAAATGTTTAGGATGATTGAGGCTGCTGCGGCCTGTGTGCGTCATTCCTCAGTTAAAAGGCCAAAGATGAGTCAGGTTGTGAGAGCTTTTGATTCCATGGACGAGTTTTCAGATCTGAATAACGGAATGATACCGGGACAGAGTTCAGTGTTTGATTCTGCACAGCAATCTGCACAGATCAGAATGTTTAGGAGGATGGCTTTTGGAAGCCAAGATAGTTCTGCTTCCAGTTTCCTTAATGAGTCTCAAAGTAGTTATAGGACTAGGGACCAAGACTCTACAAGTATATTTCCTCAAAATAAATCTAGGTCTTGGAACTTTCGAGATGACGCTTAA

Protein sequence

>Msa1140020

MATIPLSPNGSPIALPPSSGAAVLPPTTSSQSNQTTNTPPPSVPPLSTSVPVTPPPSPSLSPPPLLTTPPPASPPPASSPPPIVTSPPPASPAPPVVTSPPPTPAATAPPPAETSPSIPNLSPPPPSAGSPPPQPSKPPPSESVSPSPPPPAPKPRSTKPPPPTPQAKPPKSNTPSPPSHDAPPPSVSHTPPSPSTDVPPPSTSTVVPPPSTLPSTPPSVPSESAPPRAVPSGSAAPPAASLPRPPRNKTVAAGGPTVSLPSIPAEKPTARPTVDGSGNAATSNAPSNSGGLNTGGAVAIGVVVSLVVISLLVMAVLYVRKKKKGKGPIADYAAPSPFTSSHNSGTLFLKPQPQSPANFIGSGNGSEFVYSPSEPGGVNSSRSWFTYEELIQATNGFSEQNMLGEGGFGCVYKGLLIDGREVAVKQLKIGGGQGEREFRAEVETISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHDENAPVLNWPIRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDQNFEALVSDFGLAKLTLDSNTHVTTRVMGTFGYMAPEYATSGKLTDKSDVYSYGVVLLELITGRKPVDASQPIGDESLVEWARPLLMEALNSEDFETLADPRLGKNYNRNEMFRMIEAAAACVRHSSVKRPKMSQVVRAFDSMDEFSDLNNGMIPGQSSVFDSAQQSAQIRMFRRMAFGSQDSSASSFLNESQSSYRTRDQDSTSIFPQNKSRSWNFRDDA*