Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142620 | ABN09121.1 | 92.593 | 405 | 29 | 1 | 1 | 405 | 1 | 404 | 0.0 | 760 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142620 | sp|Q6X7J5|WOX8_ARATH | 52.344 | 128 | 53 | 1 | 1 | 120 | 1 | 128 | 5.29e-39 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142620 | A2Q6A1 | 92.593 | 405 | 29 | 1 | 1 | 405 | 1 | 404 | 0.0 | 760 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1142620 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142620 | MtrunA17_Chr7g0223471 | 92.365 | 406 | 30 | 1 | 1 | 406 | 1 | 405 | 0.0 | 759 |
| Msa1142620 | MtrunA17_Chr4g0046231 | 58.120 | 351 | 118 | 6 | 66 | 409 | 1 | 329 | 2.46e-116 | 343 |
| Msa1142620 | MtrunA17_Chr2g0283141 | 41.781 | 438 | 191 | 12 | 1 | 406 | 1 | 406 | 5.59e-81 | 256 |
| Msa1142620 | MtrunA17_Chr4g0046241 | 58.989 | 178 | 63 | 2 | 163 | 339 | 1 | 169 | 8.24e-62 | 197 |
| Msa1142620 | MtrunA17_Chr4g0046251 | 65.672 | 67 | 23 | 0 | 340 | 406 | 19 | 85 | 1.74e-24 | 96.7 |
| Msa1142620 | MtrunA17_Chr6g0460691 | 63.333 | 60 | 22 | 0 | 39 | 98 | 24 | 83 | 2.71e-22 | 96.3 |
| Msa1142620 | MtrunA17_Chr7g0254251 | 66.667 | 60 | 20 | 0 | 37 | 96 | 18 | 77 | 3.20e-22 | 95.5 |
| Msa1142620 | MtrunA17_Chr4g0043891 | 45.714 | 70 | 38 | 0 | 42 | 111 | 3 | 72 | 4.83e-17 | 80.5 |
| Msa1142620 | MtrunA17_Chr5g0436661 | 41.250 | 80 | 47 | 0 | 29 | 108 | 15 | 94 | 6.92e-16 | 75.5 |
| Msa1142620 | MtrunA17_Chr8g0392991 | 50.000 | 62 | 31 | 0 | 47 | 108 | 96 | 157 | 9.08e-16 | 78.2 |
| Msa1142620 | MtrunA17_Chr5g0405351 | 48.438 | 64 | 32 | 1 | 47 | 109 | 30 | 93 | 7.84e-15 | 74.7 |
| Msa1142620 | MtrunA17_Chr1g0212511 | 42.857 | 77 | 40 | 1 | 30 | 106 | 72 | 144 | 3.39e-14 | 72.4 |
| Msa1142620 | MtrunA17_Chr4g0031341 | 45.161 | 62 | 34 | 0 | 47 | 108 | 25 | 86 | 2.38e-13 | 69.7 |
| Msa1142620 | MtrunA17_Chr1g0153171 | 46.774 | 62 | 33 | 0 | 47 | 108 | 90 | 151 | 5.49e-13 | 68.2 |
| Msa1142620 | MtrunA17_Chr3g0144021 | 44.444 | 63 | 35 | 0 | 45 | 107 | 80 | 142 | 6.21e-13 | 67.8 |
| Msa1142620 | MtrunA17_Chr7g0238431 | 39.726 | 73 | 44 | 0 | 41 | 113 | 2 | 74 | 2.70e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142620 | AT5G45980.1 | 52.344 | 128 | 53 | 1 | 1 | 120 | 1 | 128 | 5.37e-40 | 145 |
| Msa1142620 | AT5G45980.1 | 39.560 | 91 | 46 | 2 | 325 | 406 | 235 | 325 | 1.57e-11 | 65.5 |
| Msa1142620 | AT3G03660.1 | 68.519 | 54 | 17 | 0 | 45 | 98 | 31 | 84 | 1.40e-21 | 94.0 |
| Msa1142620 | AT3G03660.2 | 68.519 | 54 | 17 | 0 | 45 | 98 | 31 | 84 | 2.48e-21 | 94.0 |
| Msa1142620 | AT3G03660.4 | 66.102 | 59 | 19 | 1 | 41 | 98 | 26 | 84 | 2.99e-21 | 94.0 |
| Msa1142620 | AT3G03660.3 | 66.102 | 59 | 19 | 1 | 41 | 98 | 26 | 84 | 4.35e-21 | 94.0 |
| Msa1142620 | AT5G17810.1 | 66.667 | 54 | 18 | 0 | 45 | 98 | 19 | 72 | 1.05e-20 | 91.7 |
| Msa1142620 | AT5G17810.2 | 66.667 | 54 | 18 | 0 | 45 | 98 | 19 | 72 | 1.05e-20 | 91.7 |
| Msa1142620 | AT5G17810.3 | 66.667 | 54 | 18 | 0 | 45 | 98 | 19 | 72 | 1.06e-20 | 91.7 |
| Msa1142620 | AT5G05770.1 | 40.000 | 75 | 45 | 0 | 47 | 121 | 29 | 103 | 4.51e-15 | 72.0 |
| Msa1142620 | AT3G18010.1 | 38.384 | 99 | 52 | 2 | 47 | 145 | 76 | 165 | 6.94e-15 | 75.9 |
| Msa1142620 | AT3G11260.1 | 45.312 | 64 | 35 | 0 | 47 | 110 | 24 | 87 | 3.14e-14 | 71.2 |
| Msa1142620 | AT4G35550.1 | 46.032 | 63 | 34 | 0 | 45 | 107 | 97 | 159 | 4.57e-14 | 72.4 |
| Msa1142620 | AT2G17950.1 | 48.438 | 64 | 32 | 1 | 47 | 109 | 38 | 101 | 5.22e-14 | 72.8 |
| Msa1142620 | AT1G46480.2 | 46.774 | 62 | 33 | 0 | 47 | 108 | 90 | 151 | 1.42e-13 | 69.3 |
| Msa1142620 | AT1G20700.2 | 44.444 | 63 | 35 | 0 | 45 | 107 | 31 | 93 | 1.86e-13 | 68.2 |
| Msa1142620 | AT1G20700.1 | 44.444 | 63 | 35 | 0 | 45 | 107 | 93 | 155 | 3.40e-13 | 68.9 |
| Msa1142620 | AT1G20700.3 | 44.444 | 63 | 35 | 0 | 45 | 107 | 93 | 155 | 3.59e-13 | 68.6 |
| Msa1142620 | AT2G33880.2 | 45.714 | 70 | 37 | 1 | 348 | 417 | 320 | 388 | 4.20e-13 | 70.9 |
| Msa1142620 | AT1G46480.1 | 46.774 | 62 | 33 | 0 | 47 | 108 | 90 | 151 | 6.70e-13 | 68.6 |
| Msa1142620 | AT5G59340.1 | 41.935 | 62 | 36 | 0 | 47 | 108 | 14 | 75 | 2.59e-12 | 67.0 |
| Msa1142620 | AT2G28610.1 | 41.176 | 68 | 40 | 0 | 41 | 108 | 2 | 69 | 4.57e-12 | 66.2 |
| Msa1142620 | AT2G33880.1 | 47.458 | 59 | 31 | 0 | 348 | 406 | 320 | 378 | 4.57e-12 | 67.8 |
| Msa1142620 | AT2G01500.1 | 39.241 | 79 | 40 | 1 | 31 | 101 | 37 | 115 | 9.58e-12 | 65.5 |
| Msa1142620 | AT5G46010.1 | 46.154 | 65 | 34 | 1 | 43 | 106 | 50 | 114 | 2.42e-11 | 60.8 |
Find 107 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCATCTTGGCTTTGGTTC+TGG | 0.191744 | 7_4:+17161784 | None:intergenic |
| CAAGACCCACAACTTAATTT+TGG | 0.218741 | 7_4:-17161031 | Msa1142620:CDS |
| ATGAACTATGGAAGTGTTAA+TGG | 0.219154 | 7_4:-17161223 | Msa1142620:CDS |
| CACCATCCCTGTGTTGAAAA+TGG | 0.220373 | 7_4:+17161729 | None:intergenic |
| CATAGGTTTAATCACTTATC+TGG | 0.257497 | 7_4:-17161250 | Msa1142620:CDS |
| AAAGGATGCACGAACGTTAA+AGG | 0.277456 | 7_4:+17160424 | None:intergenic |
| AATAAGCATCAACTTGGTTT+TGG | 0.278040 | 7_4:+17161383 | None:intergenic |
| ATGCGAATTTGTTGTGGTTT+TGG | 0.291711 | 7_4:+17161760 | None:intergenic |
| TTATCTGGTTTCATGAACTA+TGG | 0.293987 | 7_4:-17161235 | Msa1142620:CDS |
| AATTAAGTTGTGGGTCTTGC+TGG | 0.313309 | 7_4:+17161035 | None:intergenic |
| TAAACAAAGCAGATGTTATA+AGG | 0.328927 | 7_4:+17160287 | None:intergenic |
| TTGACGCTGATGATCAATAA+TGG | 0.343964 | 7_4:+17160916 | None:intergenic |
| TTTGGGTTCCATCTTGGCTT+TGG | 0.347448 | 7_4:+17161778 | None:intergenic |
| TCATCATCGTCATCTTCTTC+TGG | 0.355757 | 7_4:-17161514 | Msa1142620:CDS |
| CTCAACTCGTCTCTCTTAAC+TGG | 0.358193 | 7_4:-17162652 | Msa1142620:intron |
| TTTAACGTTCGTGCATCCTT+TGG | 0.359074 | 7_4:-17160422 | Msa1142620:CDS |
| CGTGAACAATTACAAGAGTT+TGG | 0.359135 | 7_4:-17161676 | Msa1142620:CDS |
| ATTGTAATTTCTAACAATAT+CGG | 0.371493 | 7_4:-17161466 | Msa1142620:CDS |
| CATGAGCTCATCATGAACTA+TGG | 0.376168 | 7_4:-17161142 | Msa1142620:CDS |
| ATCTTCGTAATTTCCTCCCT+TGG | 0.380246 | 7_4:+17161700 | None:intergenic |
| TGACGCTGATGATCAATAAT+GGG | 0.383981 | 7_4:+17160917 | None:intergenic |
| TACTAAGGACGCCTCATTCA+TGG | 0.386072 | 7_4:-17160459 | Msa1142620:CDS |
| TCCAGTTCTAACCGATGAAT+GGG | 0.405372 | 7_4:-17160366 | Msa1142620:CDS |
| TGTGGTGTTGTCATGGCATT+AGG | 0.415749 | 7_4:+17161271 | None:intergenic |
| GGGTGTGGATGGTTGTAAAT+CGG | 0.422102 | 7_4:+17161342 | None:intergenic |
| GTTGTAAATCGGTTTCAGTC+GGG | 0.426487 | 7_4:+17161353 | None:intergenic |
| GGATTCTCCAATGCTAATGA+TGG | 0.428470 | 7_4:-17161445 | Msa1142620:CDS |
| ATGGGGAATGGAACAGCAAC+AGG | 0.432330 | 7_4:+17160935 | None:intergenic |
| CCCCATTCATCGGTTAGAAC+TGG | 0.434360 | 7_4:+17160365 | None:intergenic |
| TCAGGATTTGGTGTAGAAGA+TGG | 0.437138 | 7_4:-17160503 | Msa1142620:intron |
| GCCTTGAGAATTCCGTTGGT+TGG | 0.439358 | 7_4:+17162675 | None:intergenic |
| TTCGTAATTTCCTCCCTTGG+TGG | 0.441626 | 7_4:+17161703 | None:intergenic |
| CCATGGTGCTACTTATTACC+TGG | 0.446959 | 7_4:-17160321 | Msa1142620:CDS |
| AAGGATGCACGAACGTTAAA+GGG | 0.448612 | 7_4:+17160425 | None:intergenic |
| TTAGAAATTACAATTTCATC+GGG | 0.455420 | 7_4:+17161475 | None:intergenic |
| CTCCAGTTCTAACCGATGAA+TGG | 0.457716 | 7_4:-17160367 | Msa1142620:CDS |
| CGCCTCATTCATGGTTGATG+TGG | 0.462527 | 7_4:-17160450 | Msa1142620:CDS |
| GCCTCATTCATGGTTGATGT+GGG | 0.464076 | 7_4:-17160449 | Msa1142620:CDS |
| CCTCTTCCTCCGACTACCAT+TGG | 0.468440 | 7_4:-17160962 | Msa1142620:CDS |
| TCGTAATTTCCTCCCTTGGT+GGG | 0.478421 | 7_4:+17161704 | None:intergenic |
| GCAGTTCTCTTTGACTCCTA+TGG | 0.483026 | 7_4:-17160392 | Msa1142620:CDS |
| GTTAGAAATTACAATTTCAT+CGG | 0.486033 | 7_4:+17161474 | None:intergenic |
| CTCCAGAACCAAAGCCAAGA+TGG | 0.487752 | 7_4:-17161786 | Msa1142620:CDS |
| GTGTTTCTCGTTTCTTGTTG+TGG | 0.496273 | 7_4:+17161578 | None:intergenic |
| AATTACAATTTCATCGGGAG+AGG | 0.500444 | 7_4:+17161480 | None:intergenic |
| TCATTAATATGATTATCCAC+AGG | 0.501645 | 7_4:+17161304 | None:intergenic |
| CCAATGGTAGTCGGAGGAAG+AGG | 0.504535 | 7_4:+17160962 | None:intergenic |
| ATTCCGTTGGTTGGACGCAT+TGG | 0.507387 | 7_4:+17162684 | None:intergenic |
| GGTTGTAAATCGGTTTCAGT+CGG | 0.507694 | 7_4:+17161352 | None:intergenic |
| CAACACCAAAATTAAGTTGT+GGG | 0.508001 | 7_4:+17161026 | None:intergenic |
| GACTCTTCTCTTGATCATAT+CGG | 0.515755 | 7_4:+17161089 | None:intergenic |
| AAATATTGTTTAGGTGGAGA+TGG | 0.518896 | 7_4:-17161820 | Msa1142620:intron |
| CACCATCCCATCATTAGCAT+TGG | 0.520729 | 7_4:+17161438 | None:intergenic |
| ATCATATCGGTCATCGATTG+TGG | 0.526068 | 7_4:+17161102 | None:intergenic |
| TTGAAACCAGTAAAAGACAT+TGG | 0.529718 | 7_4:+17161639 | None:intergenic |
| TGAGGCCTTGAGAATTCCGT+TGG | 0.536803 | 7_4:+17162671 | None:intergenic |
| AGGTAAGGGTTGAACCATTG+AGG | 0.538283 | 7_4:+17161195 | None:intergenic |
| AAAATGTACGGTGATTACTA+AGG | 0.540588 | 7_4:-17160474 | Msa1142620:CDS |
| AGAAGATGACGATGATGAGT+TGG | 0.545042 | 7_4:+17161519 | None:intergenic |
| GAAGATGACGATGATGAGTT+GGG | 0.545800 | 7_4:+17161520 | None:intergenic |
| CATTAATATGATTATCCACA+GGG | 0.549869 | 7_4:+17161305 | None:intergenic |
| GCTAGGCCAATGTTTGTTCG+AGG | 0.550853 | 7_4:+17162723 | None:intergenic |
| TGTTAATGGAAGCTCCTCAA+TGG | 0.556181 | 7_4:-17161209 | Msa1142620:CDS |
| TTACAAGAGTTTGGTCAAGT+TGG | 0.556243 | 7_4:-17161667 | Msa1142620:CDS |
| TTGTAAATCGGTTTCAGTCG+GGG | 0.563298 | 7_4:+17161354 | None:intergenic |
| CCCCACATCAACCATGAATG+AGG | 0.565657 | 7_4:+17160448 | None:intergenic |
| TCAAGAATGCGAATTTGTTG+TGG | 0.566753 | 7_4:+17161754 | None:intergenic |
| ACCATGGTGGAGCGAATCGA+GGG | 0.568055 | 7_4:+17160337 | None:intergenic |
| GTAGACTTCTTGAACATGCT+AGG | 0.571860 | 7_4:+17162706 | None:intergenic |
| TGGCTTCCTCGAACAAACAT+TGG | 0.573120 | 7_4:-17162729 | Msa1142620:CDS |
| CGAGAAACACAACAAAACTC+TGG | 0.574956 | 7_4:-17161565 | Msa1142620:CDS |
| GCAACACCAAAATTAAGTTG+TGG | 0.576573 | 7_4:+17161025 | None:intergenic |
| TTTGTTTGCTTCGAGACTTG+CGG | 0.586191 | 7_4:+17161614 | None:intergenic |
| AAACCTATGTGGTGTTGTCA+TGG | 0.586615 | 7_4:+17161264 | None:intergenic |
| GATTCTCCAATGCTAATGAT+GGG | 0.589822 | 7_4:-17161444 | Msa1142620:CDS |
| CACCATGGTGGAGCGAATCG+AGG | 0.590019 | 7_4:+17160336 | None:intergenic |
| GAGGGTAACACCCCATTCAT+CGG | 0.593009 | 7_4:+17160355 | None:intergenic |
| GGTTAGAACTGGAGTACCAT+AGG | 0.594488 | 7_4:+17160376 | None:intergenic |
| CTCCAATGCTAATGATGGGA+TGG | 0.594670 | 7_4:-17161440 | Msa1142620:CDS |
| AACAGCAACAGGTGCACCAA+TGG | 0.597910 | 7_4:+17160946 | None:intergenic |
| TGATGATCAATAATGGGGAA+TGG | 0.600712 | 7_4:+17160923 | None:intergenic |
| TTGGTTCACCGAGACTGCGG+GGG | 0.602191 | 7_4:+17161402 | None:intergenic |
| TCCAACCAACGGAATTCTCA+AGG | 0.602756 | 7_4:-17162676 | Msa1142620:CDS |
| GAGAACTGCTCGATCTCCAA+AGG | 0.604797 | 7_4:+17160406 | None:intergenic |
| CTACCAATGCGTCCAACCAA+CGG | 0.608541 | 7_4:-17162687 | Msa1142620:CDS |
| GATAAGTGATTAAACCTATG+TGG | 0.608582 | 7_4:+17161253 | None:intergenic |
| TGTGAAAATAAGCATCAACT+TGG | 0.611249 | 7_4:+17161377 | None:intergenic |
| TGATCAAGAGAAGAGTCAAG+AGG | 0.611568 | 7_4:-17161083 | Msa1142620:CDS |
| ATTATTGATCATCAGCGTCA+AGG | 0.621021 | 7_4:-17160914 | Msa1142620:intron |
| TTTGGTTCACCGAGACTGCG+GGG | 0.623412 | 7_4:+17161401 | None:intergenic |
| CAGTTAAGAGAGACGAGTTG+AGG | 0.631435 | 7_4:+17162653 | None:intergenic |
| GATGGTGAACCCACCAAGGG+AGG | 0.632998 | 7_4:-17161713 | Msa1142620:CDS |
| ATGCCATGACAACACCACAT+AGG | 0.641572 | 7_4:-17161267 | Msa1142620:CDS |
| ACAGGTGCACCAATGGTAGT+CGG | 0.643930 | 7_4:+17160953 | None:intergenic |
| CAGGGATGGTGAACCCACCA+AGG | 0.647061 | 7_4:-17161717 | Msa1142620:CDS |
| GGTAATAAGTAGCACCATGG+TGG | 0.650858 | 7_4:+17160324 | None:intergenic |
| CAATGCTAATGATGGGATGG+TGG | 0.652306 | 7_4:-17161437 | Msa1142620:CDS |
| GACGCTGATGATCAATAATG+GGG | 0.656640 | 7_4:+17160918 | None:intergenic |
| CCTCATTCATGGTTGATGTG+GGG | 0.657797 | 7_4:-17160448 | Msa1142620:CDS |
| ACCCTCGATTCGCTCCACCA+TGG | 0.662822 | 7_4:-17160338 | Msa1142620:CDS |
| ATGAGCTCATGATTAACTAG+AGG | 0.665512 | 7_4:+17161154 | None:intergenic |
| AGGGATGGTGAACCCACCAA+GGG | 0.665906 | 7_4:-17161716 | Msa1142620:CDS |
| ATTTGGTGTAGAAGATGGAG+CGG | 0.681219 | 7_4:-17160498 | Msa1142620:CDS |
| CCAGTTCTAACCGATGAATG+GGG | 0.682383 | 7_4:-17160365 | Msa1142620:CDS |
| CCAGGTAATAAGTAGCACCA+TGG | 0.700447 | 7_4:+17160321 | None:intergenic |
| GGTGCACCAATGGTAGTCGG+AGG | 0.701339 | 7_4:+17160956 | None:intergenic |
| GATGACGATGATGAGTTGGG+TGG | 0.712576 | 7_4:+17161523 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAATAATAAGTAGA+GGG | + | chr7_4:17160400-17160419 | None:intergenic | 10.0% |
| !! | TAAATAATAATAATAAGTAG+AGG | + | chr7_4:17160401-17160420 | None:intergenic | 10.0% |
| !!! | TAATATTTCTATAAAACAAT+TGG | + | chr7_4:17160916-17160935 | None:intergenic | 10.0% |
| !!! | ATTTGAAAGTTTAGATTTTT+AGG | - | chr7_4:17160631-17160650 | Msa1142620:intron | 15.0% |
| !!! | TTTGAAAGTTTAGATTTTTA+GGG | - | chr7_4:17160632-17160651 | Msa1142620:intron | 15.0% |
| !! | ATTGTAATTTCTAACAATAT+CGG | - | chr7_4:17161547-17161566 | Msa1142620:CDS | 15.0% |
| !!! | TGAGTTTATAATCATTGATT+TGG | + | chr7_4:17160482-17160501 | None:intergenic | 20.0% |
| !!! | AATTTTAAATCGATTCGTTT+AGG | + | chr7_4:17160614-17160633 | None:intergenic | 20.0% |
| !!! | TTGTTTTATTGTATACACTA+CGG | - | chr7_4:17160854-17160873 | Msa1142620:intron | 20.0% |
| !! | GAAATATTATAATACTCCAT+AGG | - | chr7_4:17160927-17160946 | Msa1142620:CDS | 20.0% |
| !!! | TATAGAAGTATCATAATACT+CGG | - | chr7_4:17161094-17161113 | Msa1142620:CDS | 20.0% |
| !!! | GCTTTTAACAAATATTGTTT+AGG | - | chr7_4:17161184-17161203 | Msa1142620:CDS | 20.0% |
| !! | TTTAACAAATATTGTTTAGG+TGG | - | chr7_4:17161187-17161206 | Msa1142620:CDS | 20.0% |
| !! | TTAGAAATTACAATTTCATC+GGG | + | chr7_4:17161541-17161560 | None:intergenic | 20.0% |
| !! | GTTAGAAATTACAATTTCAT+CGG | + | chr7_4:17161542-17161561 | None:intergenic | 20.0% |
| !!! | AACTTAGTTTGAATTTTAGT+TGG | - | chr7_4:17162203-17162222 | Msa1142620:intron | 20.0% |
| !!! | TTTCGTTTTATTATATTCCA+CGG | - | chr7_4:17162402-17162421 | Msa1142620:intron | 20.0% |
| ! | TTTGATTAGATCTAACACAT+AGG | + | chr7_4:17160436-17160455 | None:intergenic | 25.0% |
| !!! | TTTAGGTTTTTTCTATGTTG+GGG | + | chr7_4:17160597-17160616 | None:intergenic | 25.0% |
| !!! | GTTTAGGTTTTTTCTATGTT+GGG | + | chr7_4:17160598-17160617 | None:intergenic | 25.0% |
| ! | GCTAAAATTTGATCTATACT+CGG | - | chr7_4:17160654-17160673 | Msa1142620:intron | 25.0% |
| ! | TGAAAATATAATTGCTCGAA+CGG | + | chr7_4:17160719-17160738 | None:intergenic | 25.0% |
| ! | CATTAATATGATTATCCACA+GGG | + | chr7_4:17161711-17161730 | None:intergenic | 25.0% |
| ! | TCATTAATATGATTATCCAC+AGG | + | chr7_4:17161712-17161731 | None:intergenic | 25.0% |
| ! | ATGAACTATGGAAGTAAAAA+TGG | - | chr7_4:17161883-17161902 | Msa1142620:intron | 25.0% |
| ! | TAATAAAACGAAATCATACC+CGG | + | chr7_4:17162395-17162414 | None:intergenic | 25.0% |
| ! | TAAACAAAGCAGATGTTATA+AGG | + | chr7_4:17162729-17162748 | None:intergenic | 25.0% |
| CAAAACGACTTAAATTGATG+TGG | - | chr7_4:17160512-17160531 | Msa1142620:intron | 30.0% | |
| !!! | CGTTTAGGTTTTTTCTATGT+TGG | + | chr7_4:17160599-17160618 | None:intergenic | 30.0% |
| TTATCTTCATCTGTTTGCTT+TGG | + | chr7_4:17160888-17160907 | None:intergenic | 30.0% | |
| GTAAACTACAATATGACCTA+TGG | + | chr7_4:17160946-17160965 | None:intergenic | 30.0% | |
| GTAAACTTAGCATGTTTGAT+TGG | - | chr7_4:17161162-17161181 | Msa1142620:CDS | 30.0% | |
| AAATATTGTTTAGGTGGAGA+TGG | - | chr7_4:17161193-17161212 | Msa1142620:CDS | 30.0% | |
| TTGAAACCAGTAAAAGACAT+TGG | + | chr7_4:17161377-17161396 | None:intergenic | 30.0% | |
| ! | AATAAGCATCAACTTGGTTT+TGG | + | chr7_4:17161633-17161652 | None:intergenic | 30.0% |
| TGTGAAAATAAGCATCAACT+TGG | + | chr7_4:17161639-17161658 | None:intergenic | 30.0% | |
| GATAAGTGATTAAACCTATG+TGG | + | chr7_4:17161763-17161782 | None:intergenic | 30.0% | |
| CATAGGTTTAATCACTTATC+TGG | - | chr7_4:17161763-17161782 | Msa1142620:CDS | 30.0% | |
| ! | TTATCTGGTTTCATGAACTA+TGG | - | chr7_4:17161778-17161797 | Msa1142620:CDS | 30.0% |
| !! | ATGAACTATGGAAGTGTTAA+TGG | - | chr7_4:17161790-17161809 | Msa1142620:CDS | 30.0% |
| ! | TCAACATTTTGTTGAGGTAA+GGG | + | chr7_4:17161835-17161854 | None:intergenic | 30.0% |
| ! | ATCAACATTTTGTTGAGGTA+AGG | + | chr7_4:17161836-17161855 | None:intergenic | 30.0% |
| ! | CAACACCAAAATTAAGTTGT+GGG | + | chr7_4:17161990-17162009 | None:intergenic | 30.0% |
| !!! | TTTTTGTTGTTTTATCCGTC+TGG | + | chr7_4:17162304-17162323 | None:intergenic | 30.0% |
| ! | TACCCGGAACTTTAAATTTT+GGG | + | chr7_4:17162379-17162398 | None:intergenic | 30.0% |
| ! | ATACCCGGAACTTTAAATTT+TGG | + | chr7_4:17162380-17162399 | None:intergenic | 30.0% |
| AAAATGTACGGTGATTACTA+AGG | - | chr7_4:17162539-17162558 | Msa1142620:intron | 30.0% | |
| !!! | ATGTGGTTTTTTCCATGTCA+GGG | - | chr7_4:17160529-17160548 | Msa1142620:intron | 35.0% |
| TTGTTTATATGACCCTGACA+TGG | + | chr7_4:17160544-17160563 | None:intergenic | 35.0% | |
| !!! | TGCGAATTTGTTGTGGTTTT+GGG | + | chr7_4:17161255-17161274 | None:intergenic | 35.0% |
| !!! | ATGCGAATTTGTTGTGGTTT+TGG | + | chr7_4:17161256-17161275 | None:intergenic | 35.0% |
| !! | TCAAGAATGCGAATTTGTTG+TGG | + | chr7_4:17161262-17161281 | None:intergenic | 35.0% |
| !! | TTGAAGCCATTTTCAACACA+GGG | - | chr7_4:17161278-17161297 | Msa1142620:CDS | 35.0% |
| CGTGAACAATTACAAGAGTT+TGG | - | chr7_4:17161337-17161356 | Msa1142620:CDS | 35.0% | |
| TTACAAGAGTTTGGTCAAGT+TGG | - | chr7_4:17161346-17161365 | Msa1142620:CDS | 35.0% | |
| AATTACAATTTCATCGGGAG+AGG | + | chr7_4:17161536-17161555 | None:intergenic | 35.0% | |
| GATTCTCCAATGCTAATGAT+GGG | - | chr7_4:17161569-17161588 | Msa1142620:CDS | 35.0% | |
| ! | GGTACATCAACATTTTGTTG+AGG | + | chr7_4:17161841-17161860 | None:intergenic | 35.0% |
| ATGAGCTCATGATTAACTAG+AGG | + | chr7_4:17161862-17161881 | None:intergenic | 35.0% | |
| GACTCTTCTCTTGATCATAT+CGG | + | chr7_4:17161927-17161946 | None:intergenic | 35.0% | |
| ! | CAAGACCCACAACTTAATTT+TGG | - | chr7_4:17161982-17162001 | Msa1142620:intron | 35.0% |
| ! | GCAACACCAAAATTAAGTTG+TGG | + | chr7_4:17161991-17162010 | None:intergenic | 35.0% |
| ! | TGATGATCAATAATGGGGAA+TGG | + | chr7_4:17162093-17162112 | None:intergenic | 35.0% |
| TGACGCTGATGATCAATAAT+GGG | + | chr7_4:17162099-17162118 | None:intergenic | 35.0% | |
| TTGACGCTGATGATCAATAA+TGG | + | chr7_4:17162100-17162119 | None:intergenic | 35.0% | |
| ATTATTGATCATCAGCGTCA+AGG | - | chr7_4:17162099-17162118 | Msa1142620:intron | 35.0% | |
| ! | GCACCCAAAATTTAAAGTTC+CGG | - | chr7_4:17162373-17162392 | Msa1142620:intron | 35.0% |
| ! | CACCCAAAATTTAAAGTTCC+GGG | - | chr7_4:17162374-17162393 | Msa1142620:intron | 35.0% |
| ! | TTGTCTTTTGTGTGTTTGTC+AGG | - | chr7_4:17162492-17162511 | Msa1142620:intron | 35.0% |
| TTTGTGTGTTTGTCAGGATT+TGG | - | chr7_4:17162498-17162517 | Msa1142620:intron | 35.0% | |
| TATAAGGAAAAATACGCACC+AGG | + | chr7_4:17162713-17162732 | None:intergenic | 35.0% | |
| GTAGACTTCTTGAACATGCT+AGG | + | chr7_4:17160310-17160329 | None:intergenic | 40.0% | |
| !!! | GATGTGGTTTTTTCCATGTC+AGG | - | chr7_4:17160528-17160547 | Msa1142620:intron | 40.0% |
| !! | CTTGAAGCCATTTTCAACAC+AGG | - | chr7_4:17161277-17161296 | Msa1142620:CDS | 40.0% |
| ATCTTCGTAATTTCCTCCCT+TGG | + | chr7_4:17161316-17161335 | None:intergenic | 40.0% | |
| ! | GTGATGCCAATGTCTTTTAC+TGG | - | chr7_4:17161368-17161387 | Msa1142620:CDS | 40.0% |
| TTTGTTTGCTTCGAGACTTG+CGG | + | chr7_4:17161402-17161421 | None:intergenic | 40.0% | |
| GTGTTTCTCGTTTCTTGTTG+TGG | + | chr7_4:17161438-17161457 | None:intergenic | 40.0% | |
| CGAGAAACACAACAAAACTC+TGG | - | chr7_4:17161448-17161467 | Msa1142620:CDS | 40.0% | |
| GAAGATGACGATGATGAGTT+GGG | + | chr7_4:17161496-17161515 | None:intergenic | 40.0% | |
| AGAAGATGACGATGATGAGT+TGG | + | chr7_4:17161497-17161516 | None:intergenic | 40.0% | |
| TCATCATCGTCATCTTCTTC+TGG | - | chr7_4:17161499-17161518 | Msa1142620:CDS | 40.0% | |
| GGATTCTCCAATGCTAATGA+TGG | - | chr7_4:17161568-17161587 | Msa1142620:CDS | 40.0% | |
| ! | TTGTAAATCGGTTTCAGTCG+GGG | + | chr7_4:17161662-17161681 | None:intergenic | 40.0% |
| ! | GTTGTAAATCGGTTTCAGTC+GGG | + | chr7_4:17161663-17161682 | None:intergenic | 40.0% |
| ! | GGTTGTAAATCGGTTTCAGT+CGG | + | chr7_4:17161664-17161683 | None:intergenic | 40.0% |
| ACAGGGAAAGAGAAAAATGG+GGG | + | chr7_4:17161694-17161713 | None:intergenic | 40.0% | |
| CACAGGGAAAGAGAAAAATG+GGG | + | chr7_4:17161695-17161714 | None:intergenic | 40.0% | |
| CCACAGGGAAAGAGAAAAAT+GGG | + | chr7_4:17161696-17161715 | None:intergenic | 40.0% | |
| TCCACAGGGAAAGAGAAAAA+TGG | + | chr7_4:17161697-17161716 | None:intergenic | 40.0% | |
| !! | AAACCTATGTGGTGTTGTCA+TGG | + | chr7_4:17161752-17161771 | None:intergenic | 40.0% |
| TGTTAATGGAAGCTCCTCAA+TGG | - | chr7_4:17161804-17161823 | Msa1142620:CDS | 40.0% | |
| CATGAGCTCATCATGAACTA+TGG | - | chr7_4:17161871-17161890 | Msa1142620:intron | 40.0% | |
| ! | ATCATATCGGTCATCGATTG+TGG | + | chr7_4:17161914-17161933 | None:intergenic | 40.0% |
| TGATCAAGAGAAGAGTCAAG+AGG | - | chr7_4:17161930-17161949 | Msa1142620:intron | 40.0% | |
| ! | AATTAAGTTGTGGGTCTTGC+TGG | + | chr7_4:17161981-17162000 | None:intergenic | 40.0% |
| GACGCTGATGATCAATAATG+GGG | + | chr7_4:17162098-17162117 | None:intergenic | 40.0% | |
| ! | TTGCGTTTGGCTTAATCAGA+AGG | + | chr7_4:17162257-17162276 | None:intergenic | 40.0% |
| TTCATCTCTCACATGCAACT+TGG | + | chr7_4:17162472-17162491 | None:intergenic | 40.0% | |
| !! | TCAGGATTTGGTGTAGAAGA+TGG | - | chr7_4:17162510-17162529 | Msa1142620:intron | 40.0% |
| !! | ATTTGGTGTAGAAGATGGAG+CGG | - | chr7_4:17162515-17162534 | Msa1142620:intron | 40.0% |
| AGATGGAGCGGAAAAATGTA+CGG | - | chr7_4:17162527-17162546 | Msa1142620:intron | 40.0% | |
| AAGGATGCACGAACGTTAAA+GGG | + | chr7_4:17162591-17162610 | None:intergenic | 40.0% | |
| AAAGGATGCACGAACGTTAA+AGG | + | chr7_4:17162592-17162611 | None:intergenic | 40.0% | |
| TTTAACGTTCGTGCATCCTT+TGG | - | chr7_4:17162591-17162610 | Msa1142620:intron | 40.0% | |
| ! | TCCAGTTCTAACCGATGAAT+GGG | - | chr7_4:17162647-17162666 | Msa1142620:intron | 40.0% |
| TGGCTTCCTCGAACAAACAT+TGG | - | chr7_4:17160284-17160303 | Msa1142620:CDS | 45.0% | |
| TCCAACCAACGGAATTCTCA+AGG | - | chr7_4:17160337-17160356 | Msa1142620:CDS | 45.0% | |
| CAGTTAAGAGAGACGAGTTG+AGG | + | chr7_4:17160363-17160382 | None:intergenic | 45.0% | |
| CTCAACTCGTCTCTCTTAAC+TGG | - | chr7_4:17160361-17160380 | Msa1142620:CDS | 45.0% | |
| !! | TTCCATCTTGGCTTTGGTTC+TGG | + | chr7_4:17161232-17161251 | None:intergenic | 45.0% |
| ! | TTTGGGTTCCATCTTGGCTT+TGG | + | chr7_4:17161238-17161257 | None:intergenic | 45.0% |
| !!! | TGTGGTTTTGGGTTCCATCT+TGG | + | chr7_4:17161244-17161263 | None:intergenic | 45.0% |
| !! | AGCCATTTTCAACACAGGGA+TGG | - | chr7_4:17161282-17161301 | Msa1142620:CDS | 45.0% |
| CACCATCCCTGTGTTGAAAA+TGG | + | chr7_4:17161287-17161306 | None:intergenic | 45.0% | |
| TCGTAATTTCCTCCCTTGGT+GGG | + | chr7_4:17161312-17161331 | None:intergenic | 45.0% | |
| TTCGTAATTTCCTCCCTTGG+TGG | + | chr7_4:17161313-17161332 | None:intergenic | 45.0% | |
| ! | CTCCAATGCTAATGATGGGA+TGG | - | chr7_4:17161573-17161592 | Msa1142620:CDS | 45.0% |
| CACCATCCCATCATTAGCAT+TGG | + | chr7_4:17161578-17161597 | None:intergenic | 45.0% | |
| ! | CAATGCTAATGATGGGATGG+TGG | - | chr7_4:17161576-17161595 | Msa1142620:CDS | 45.0% |
| GGGTGTGGATGGTTGTAAAT+CGG | + | chr7_4:17161674-17161693 | None:intergenic | 45.0% | |
| GAAAGAGAAAAATGGGGGTG+TGG | + | chr7_4:17161689-17161708 | None:intergenic | 45.0% | |
| !! | CCCATTTTTCTCTTTCCCTG+TGG | - | chr7_4:17161693-17161712 | Msa1142620:CDS | 45.0% |
| !! | TGTGGTGTTGTCATGGCATT+AGG | + | chr7_4:17161745-17161764 | None:intergenic | 45.0% |
| ATGCCATGACAACACCACAT+AGG | - | chr7_4:17161746-17161765 | Msa1142620:CDS | 45.0% | |
| AGGTAAGGGTTGAACCATTG+AGG | + | chr7_4:17161821-17161840 | None:intergenic | 45.0% | |
| !!! | CGGCTTGGTAATTTTGCGTT+TGG | + | chr7_4:17162270-17162289 | None:intergenic | 45.0% |
| !! | TCCGTCTGGTTCTCAAAAAG+CGG | + | chr7_4:17162290-17162309 | None:intergenic | 45.0% |
| TACTAAGGACGCCTCATTCA+TGG | - | chr7_4:17162554-17162573 | Msa1142620:intron | 45.0% | |
| ! | GCCTCATTCATGGTTGATGT+GGG | - | chr7_4:17162564-17162583 | Msa1142620:intron | 45.0% |
| ! | CCTCATTCATGGTTGATGTG+GGG | - | chr7_4:17162565-17162584 | Msa1142620:intron | 45.0% |
| GCAGTTCTCTTTGACTCCTA+TGG | - | chr7_4:17162621-17162640 | Msa1142620:intron | 45.0% | |
| ! | GGTTAGAACTGGAGTACCAT+AGG | + | chr7_4:17162640-17162659 | None:intergenic | 45.0% |
| ! | CTCCAGTTCTAACCGATGAA+TGG | - | chr7_4:17162646-17162665 | Msa1142620:intron | 45.0% |
| ! | CCAGTTCTAACCGATGAATG+GGG | - | chr7_4:17162648-17162667 | Msa1142620:intron | 45.0% |
| GGTAATAAGTAGCACCATGG+TGG | + | chr7_4:17162692-17162711 | None:intergenic | 45.0% | |
| CCAGGTAATAAGTAGCACCA+TGG | + | chr7_4:17162695-17162714 | None:intergenic | 45.0% | |
| !! | CCATGGTGCTACTTATTACC+TGG | - | chr7_4:17162692-17162711 | Msa1142620:CDS | 45.0% |
| !!! | TATATATTTGTAATTTTTAA+GGG | + | chr7_4:17162352-17162371 | None:intergenic | 5.0% |
| !!! | ATATATATTTGTAATTTTTA+AGG | + | chr7_4:17162353-17162372 | None:intergenic | 5.0% |
| GCTAGGCCAATGTTTGTTCG+AGG | + | chr7_4:17160293-17160312 | None:intergenic | 50.0% | |
| CTACCAATGCGTCCAACCAA+CGG | - | chr7_4:17160326-17160345 | Msa1142620:CDS | 50.0% | |
| ! | ATTCCGTTGGTTGGACGCAT+TGG | + | chr7_4:17160332-17160351 | None:intergenic | 50.0% |
| GCCTTGAGAATTCCGTTGGT+TGG | + | chr7_4:17160341-17160360 | None:intergenic | 50.0% | |
| TGAGGCCTTGAGAATTCCGT+TGG | + | chr7_4:17160345-17160364 | None:intergenic | 50.0% | |
| CTCCAGAACCAAAGCCAAGA+TGG | - | chr7_4:17161227-17161246 | Msa1142620:CDS | 50.0% | |
| ! | GATGACGATGATGAGTTGGG+TGG | + | chr7_4:17161493-17161512 | None:intergenic | 50.0% |
| TTCTAATTCCCCCGCAGTCT+CGG | - | chr7_4:17161603-17161622 | Msa1142620:CDS | 50.0% | |
| !!! | TTTTGGTTCACCGAGACTGC+GGG | + | chr7_4:17161616-17161635 | None:intergenic | 50.0% |
| !!! | GTTTTGGTTCACCGAGACTG+CGG | + | chr7_4:17161617-17161636 | None:intergenic | 50.0% |
| ! | GAGAAAAATGGGGGTGTGGA+TGG | + | chr7_4:17161685-17161704 | None:intergenic | 50.0% |
| ACAGGTGCACCAATGGTAGT+CGG | + | chr7_4:17162063-17162082 | None:intergenic | 50.0% | |
| AACAGCAACAGGTGCACCAA+TGG | + | chr7_4:17162070-17162089 | None:intergenic | 50.0% | |
| ATGGGGAATGGAACAGCAAC+AGG | + | chr7_4:17162081-17162100 | None:intergenic | 50.0% | |
| ! | CTGGTTCTCAAAAAGCGGCT+TGG | + | chr7_4:17162285-17162304 | None:intergenic | 50.0% |
| !!! | GCCGCTTTTTGAGAACCAGA+CGG | - | chr7_4:17162286-17162305 | Msa1142620:intron | 50.0% |
| ! | CGCCTCATTCATGGTTGATG+TGG | - | chr7_4:17162563-17162582 | Msa1142620:intron | 50.0% |
| CCCCACATCAACCATGAATG+AGG | + | chr7_4:17162568-17162587 | None:intergenic | 50.0% | |
| GAGAACTGCTCGATCTCCAA+AGG | + | chr7_4:17162610-17162629 | None:intergenic | 50.0% | |
| ! | CCCCATTCATCGGTTAGAAC+TGG | + | chr7_4:17162651-17162670 | None:intergenic | 50.0% |
| GAGGGTAACACCCCATTCAT+CGG | + | chr7_4:17162661-17162680 | None:intergenic | 50.0% | |
| AGGGATGGTGAACCCACCAA+GGG | - | chr7_4:17161297-17161316 | Msa1142620:CDS | 55.0% | |
| ! | TTTGGTTCACCGAGACTGCG+GGG | + | chr7_4:17161615-17161634 | None:intergenic | 55.0% |
| CCAATGGTAGTCGGAGGAAG+AGG | + | chr7_4:17162054-17162073 | None:intergenic | 55.0% | |
| CCTCTTCCTCCGACTACCAT+TGG | - | chr7_4:17162051-17162070 | Msa1142620:intron | 55.0% | |
| ! | ACCATGGTGGAGCGAATCGA+GGG | + | chr7_4:17162679-17162698 | None:intergenic | 55.0% |
| CAGGGATGGTGAACCCACCA+AGG | - | chr7_4:17161296-17161315 | Msa1142620:CDS | 60.0% | |
| GATGGTGAACCCACCAAGGG+AGG | - | chr7_4:17161300-17161319 | Msa1142620:CDS | 60.0% | |
| TTGGTTCACCGAGACTGCGG+GGG | + | chr7_4:17161614-17161633 | None:intergenic | 60.0% | |
| GGTGCACCAATGGTAGTCGG+AGG | + | chr7_4:17162060-17162079 | None:intergenic | 60.0% | |
| ! | ACCCTCGATTCGCTCCACCA+TGG | - | chr7_4:17162675-17162694 | Msa1142620:CDS | 60.0% |
| ! | CACCATGGTGGAGCGAATCG+AGG | + | chr7_4:17162680-17162699 | None:intergenic | 60.0% |
| TTGCGCATTGCACGCGTCCG+TGG | + | chr7_4:17162422-17162441 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 17160283 | 17162752 | 17160283 | ID=Msa1142620;Name=Msa1142620 |
| chr7_4 | mRNA | 17160283 | 17162752 | 17160283 | ID=Msa1142620-mRNA-1;Parent=Msa1142620;Name=Msa1142620-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|417 |
| chr7_4 | exon | 17162653 | 17162752 | 17162653 | ID=Msa1142620-mRNA-1:exon:3833;Parent=Msa1142620-mRNA-1 |
| chr7_4 | exon | 17160915 | 17161829 | 17160915 | ID=Msa1142620-mRNA-1:exon:3832;Parent=Msa1142620-mRNA-1 |
| chr7_4 | exon | 17160283 | 17160521 | 17160283 | ID=Msa1142620-mRNA-1:exon:3831;Parent=Msa1142620-mRNA-1 |
| chr7_4 | CDS | 17162653 | 17162752 | 17162653 | ID=Msa1142620-mRNA-1:cds;Parent=Msa1142620-mRNA-1 |
| chr7_4 | CDS | 17160915 | 17161829 | 17160915 | ID=Msa1142620-mRNA-1:cds;Parent=Msa1142620-mRNA-1 |
| chr7_4 | CDS | 17160283 | 17160521 | 17160283 | ID=Msa1142620-mRNA-1:cds;Parent=Msa1142620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
