Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143040 | XP_039685680.1 | 85.106 | 799 | 99 | 3 | 1 | 779 | 1 | 799 | 0.0 | 1395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143040 | sp|Q9SZL8|FRS5_ARATH | 27.769 | 641 | 383 | 14 | 32 | 665 | 70 | 637 | 6.17e-69 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143040 | D3YBB9 | 76.580 | 807 | 172 | 4 | 1 | 798 | 49 | 847 | 0.0 | 1286 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1143040 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143040 | MtrunA17_Chr3g0088371 | 83.696 | 184 | 27 | 1 | 618 | 798 | 1 | 184 | 2.22e-103 | 316 |
| Msa1143040 | MtrunA17_Chr2g0324011 | 30.551 | 635 | 365 | 12 | 36 | 665 | 8 | 571 | 6.24e-101 | 324 |
| Msa1143040 | MtrunA17_Chr3g0082121 | 31.693 | 691 | 384 | 17 | 41 | 727 | 49 | 655 | 9.32e-101 | 327 |
| Msa1143040 | MtrunA17_Chr1g0202341 | 29.606 | 635 | 366 | 17 | 34 | 662 | 50 | 609 | 4.74e-80 | 271 |
| Msa1143040 | MtrunA17_Chr8g0363841 | 28.776 | 629 | 375 | 13 | 40 | 665 | 22 | 580 | 4.97e-75 | 257 |
| Msa1143040 | MtrunA17_Chr1g0203721 | 26.026 | 780 | 452 | 20 | 1 | 739 | 16 | 711 | 6.91e-73 | 255 |
| Msa1143040 | MtrunA17_Chr5g0448761 | 25.177 | 707 | 450 | 14 | 31 | 728 | 56 | 692 | 5.29e-69 | 243 |
| Msa1143040 | MtrunA17_Chr2g0296781 | 27.688 | 679 | 405 | 20 | 39 | 708 | 1 | 602 | 9.79e-69 | 241 |
| Msa1143040 | MtrunA17_Chr6g0458391 | 26.984 | 630 | 357 | 15 | 41 | 662 | 231 | 765 | 3.77e-65 | 232 |
| Msa1143040 | MtrunA17_Chr6g0477261 | 29.032 | 527 | 316 | 14 | 180 | 699 | 7 | 482 | 1.95e-63 | 225 |
| Msa1143040 | MtrunA17_Chr1g0164591 | 35.312 | 320 | 192 | 4 | 131 | 448 | 1 | 307 | 4.71e-63 | 214 |
| Msa1143040 | MtrunA17_Chr5g0441581 | 24.835 | 757 | 461 | 21 | 32 | 773 | 26 | 689 | 1.01e-59 | 215 |
| Msa1143040 | MtrunA17_Chr2g0287651 | 25.437 | 629 | 389 | 13 | 39 | 662 | 79 | 632 | 6.54e-59 | 216 |
| Msa1143040 | MtrunA17_Chr5g0440451 | 24.153 | 708 | 430 | 16 | 34 | 721 | 42 | 662 | 3.19e-55 | 205 |
| Msa1143040 | MtrunA17_Chr1g0207551 | 24.964 | 697 | 429 | 17 | 31 | 718 | 30 | 641 | 3.50e-55 | 204 |
| Msa1143040 | MtrunA17_Chr2g0329031 | 25.776 | 644 | 382 | 18 | 23 | 658 | 2 | 557 | 8.71e-54 | 199 |
| Msa1143040 | MtrunA17_Chr1g0172971 | 81.197 | 117 | 21 | 1 | 1 | 116 | 1 | 117 | 1.50e-53 | 194 |
| Msa1143040 | MtrunA17_Chr7g0258861 | 35.621 | 306 | 173 | 6 | 36 | 336 | 8 | 294 | 1.64e-53 | 187 |
| Msa1143040 | MtrunA17_Chr1g0196541 | 25.199 | 627 | 395 | 16 | 39 | 662 | 1 | 556 | 2.39e-53 | 197 |
| Msa1143040 | MtrunA17_Chr1g0198761 | 26.994 | 652 | 380 | 19 | 26 | 660 | 38 | 610 | 9.73e-53 | 196 |
| Msa1143040 | MtrunA17_Chr3g0118611 | 27.634 | 503 | 304 | 10 | 221 | 719 | 111 | 557 | 1.40e-52 | 196 |
| Msa1143040 | MtrunA17_Chr3g0080351 | 23.862 | 725 | 448 | 15 | 34 | 752 | 75 | 701 | 2.11e-49 | 187 |
| Msa1143040 | MtrunA17_Chr2g0287061 | 23.916 | 669 | 378 | 19 | 41 | 694 | 189 | 741 | 1.29e-47 | 181 |
| Msa1143040 | MtrunA17_Chr2g0290391 | 25.857 | 642 | 373 | 19 | 38 | 660 | 54 | 611 | 6.02e-47 | 178 |
| Msa1143040 | MtrunA17_Chr1g0203051 | 22.373 | 590 | 389 | 8 | 50 | 637 | 94 | 616 | 1.34e-46 | 176 |
| Msa1143040 | MtrunA17_Chr2g0276841 | 26.101 | 636 | 374 | 21 | 49 | 670 | 84 | 637 | 3.01e-45 | 173 |
| Msa1143040 | MtrunA17_Chr5g0448511 | 25.664 | 452 | 282 | 10 | 216 | 665 | 1 | 400 | 4.16e-44 | 167 |
| Msa1143040 | MtrunA17_Chr2g0291591 | 26.052 | 499 | 313 | 14 | 16 | 499 | 44 | 501 | 4.63e-42 | 162 |
| Msa1143040 | MtrunA17_Chr5g0431001 | 27.938 | 451 | 280 | 12 | 40 | 473 | 66 | 488 | 6.73e-42 | 160 |
| Msa1143040 | MtrunA17_Chr2g0291581 | 23.923 | 627 | 396 | 14 | 38 | 662 | 74 | 621 | 4.65e-41 | 160 |
| Msa1143040 | MtrunA17_Chr6g0475591 | 91.781 | 73 | 6 | 0 | 188 | 260 | 1 | 73 | 1.47e-40 | 143 |
| Msa1143040 | MtrunA17_Chr2g0294841 | 26.640 | 503 | 316 | 15 | 3 | 482 | 7 | 479 | 9.31e-36 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143040 | AT4G38180.1 | 27.769 | 641 | 383 | 14 | 32 | 665 | 70 | 637 | 6.27e-70 | 246 |
| Msa1143040 | AT4G15090.1 | 24.827 | 721 | 448 | 16 | 50 | 753 | 66 | 709 | 4.66e-60 | 219 |
| Msa1143040 | AT4G15090.5 | 24.827 | 721 | 448 | 16 | 50 | 753 | 66 | 709 | 4.66e-60 | 219 |
| Msa1143040 | AT4G15090.3 | 24.827 | 721 | 448 | 16 | 50 | 753 | 66 | 709 | 4.66e-60 | 219 |
| Msa1143040 | AT4G15090.2 | 24.827 | 721 | 448 | 16 | 50 | 753 | 66 | 709 | 4.66e-60 | 219 |
| Msa1143040 | AT4G15090.4 | 24.827 | 721 | 448 | 16 | 50 | 753 | 66 | 709 | 4.66e-60 | 219 |
| Msa1143040 | AT2G27110.2 | 26.298 | 597 | 366 | 15 | 127 | 719 | 108 | 634 | 1.82e-53 | 200 |
| Msa1143040 | AT2G27110.1 | 26.298 | 597 | 366 | 15 | 127 | 719 | 108 | 634 | 1.82e-53 | 200 |
| Msa1143040 | AT2G27110.3 | 27.308 | 509 | 313 | 11 | 213 | 719 | 36 | 489 | 3.49e-53 | 197 |
| Msa1143040 | AT3G06250.2 | 24.803 | 633 | 353 | 16 | 34 | 661 | 189 | 703 | 2.01e-51 | 192 |
| Msa1143040 | AT3G06250.1 | 24.803 | 633 | 353 | 16 | 34 | 661 | 189 | 703 | 2.01e-51 | 192 |
| Msa1143040 | AT3G06250.3 | 24.803 | 633 | 353 | 16 | 34 | 661 | 189 | 703 | 2.01e-51 | 192 |
| Msa1143040 | AT1G76320.3 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 1.55e-50 | 189 |
| Msa1143040 | AT1G76320.1 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 5.65e-50 | 188 |
| Msa1143040 | AT1G76320.4 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 5.65e-50 | 188 |
| Msa1143040 | AT1G76320.2 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 5.80e-50 | 188 |
| Msa1143040 | AT3G22170.2 | 22.814 | 732 | 444 | 18 | 34 | 753 | 69 | 691 | 2.15e-48 | 184 |
| Msa1143040 | AT3G22170.1 | 22.814 | 732 | 444 | 18 | 34 | 753 | 69 | 691 | 2.15e-48 | 184 |
| Msa1143040 | AT5G18960.2 | 24.575 | 647 | 360 | 18 | 24 | 661 | 200 | 727 | 7.79e-46 | 176 |
| Msa1143040 | AT5G18960.1 | 24.575 | 647 | 360 | 18 | 24 | 661 | 200 | 727 | 7.79e-46 | 176 |
| Msa1143040 | AT4G38170.1 | 25.290 | 431 | 264 | 11 | 235 | 662 | 24 | 399 | 5.12e-44 | 167 |
| Msa1143040 | AT1G10240.2 | 24.880 | 623 | 376 | 19 | 49 | 659 | 62 | 604 | 2.63e-42 | 165 |
| Msa1143040 | AT1G10240.1 | 24.880 | 623 | 376 | 19 | 49 | 659 | 62 | 604 | 2.63e-42 | 165 |
| Msa1143040 | AT5G28530.1 | 24.100 | 639 | 388 | 17 | 40 | 660 | 60 | 619 | 1.14e-41 | 163 |
| Msa1143040 | AT5G28530.3 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 7.81e-41 | 160 |
| Msa1143040 | AT5G28530.2 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 7.81e-41 | 160 |
| Msa1143040 | AT2G32250.5 | 24.295 | 745 | 427 | 22 | 4 | 743 | 10 | 622 | 1.50e-40 | 160 |
| Msa1143040 | AT2G32250.2 | 24.161 | 745 | 428 | 21 | 4 | 743 | 10 | 622 | 2.55e-40 | 160 |
| Msa1143040 | AT2G32250.4 | 24.161 | 745 | 428 | 21 | 4 | 743 | 10 | 622 | 2.55e-40 | 160 |
| Msa1143040 | AT2G32250.6 | 24.161 | 745 | 428 | 21 | 4 | 743 | 10 | 622 | 3.23e-40 | 159 |
| Msa1143040 | AT2G32250.1 | 24.161 | 745 | 428 | 21 | 4 | 743 | 10 | 622 | 3.23e-40 | 159 |
| Msa1143040 | AT2G32250.3 | 24.161 | 745 | 428 | 21 | 4 | 743 | 10 | 622 | 3.23e-40 | 159 |
| Msa1143040 | AT2G32250.7 | 24.320 | 699 | 395 | 20 | 50 | 743 | 12 | 581 | 1.54e-39 | 157 |
| Msa1143040 | AT2G32250.8 | 24.320 | 699 | 395 | 20 | 50 | 743 | 12 | 581 | 1.58e-39 | 157 |
| Msa1143040 | AT1G80010.1 | 23.890 | 653 | 374 | 23 | 41 | 662 | 101 | 661 | 8.13e-37 | 148 |
| Msa1143040 | AT1G52520.1 | 22.311 | 623 | 408 | 15 | 41 | 662 | 91 | 638 | 2.19e-33 | 137 |
| Msa1143040 | AT4G19990.1 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 1.71e-27 | 119 |
| Msa1143040 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 1.29e-12 | 72.0 |
| Msa1143040 | AT4G19990.5 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 1.85e-27 | 119 |
| Msa1143040 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.42e-12 | 72.0 |
| Msa1143040 | AT4G19990.7 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 1.92e-27 | 119 |
| Msa1143040 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 1.48e-12 | 72.0 |
| Msa1143040 | AT4G19990.3 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.10e-27 | 119 |
| Msa1143040 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.55e-12 | 71.6 |
| Msa1143040 | AT4G19990.4 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.10e-27 | 119 |
| Msa1143040 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.55e-12 | 71.6 |
| Msa1143040 | AT4G19990.6 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.39e-27 | 119 |
| Msa1143040 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.46e-12 | 72.0 |
| Msa1143040 | AT4G19990.2 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.39e-27 | 119 |
| Msa1143040 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.46e-12 | 72.0 |
| Msa1143040 | AT5G28530.4 | 21.781 | 629 | 352 | 20 | 40 | 660 | 60 | 556 | 1.90e-22 | 103 |
| Msa1143040 | AT5G28530.5 | 21.622 | 629 | 349 | 21 | 40 | 660 | 60 | 552 | 1.06e-21 | 100 |
Find 123 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 7_4:-18236453 | Msa1143040:CDS |
| TCATGCAGAGTTGGACTTTA+AGG | 0.162847 | 7_4:-18236144 | Msa1143040:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 7_4:+18235318 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 7_4:-18236186 | Msa1143040:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 7_4:-18237237 | Msa1143040:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 7_4:-18236734 | Msa1143040:intron |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 7_4:-18236701 | Msa1143040:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 7_4:+18236607 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 7_4:+18235324 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 7_4:-18236412 | Msa1143040:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 7_4:-18235472 | Msa1143040:CDS |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 7_4:+18237187 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 7_4:-18235075 | Msa1143040:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 7_4:+18235256 | None:intergenic |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 7_4:-18235889 | Msa1143040:CDS |
| ACTAGCCTGGTCTGTGTATA+TGG | 0.360230 | 7_4:+18236589 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 7_4:-18236312 | Msa1143040:CDS |
| AATTCTTGATTGTTATGTAT+TGG | 0.372244 | 7_4:-18235094 | Msa1143040:three_prime_UTR |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 7_4:-18235480 | Msa1143040:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 7_4:-18237180 | Msa1143040:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 7_4:-18237188 | Msa1143040:CDS |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | 7_4:-18238100 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 7_4:-18236313 | Msa1143040:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 7_4:+18235596 | None:intergenic |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 7_4:+18237717 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 7_4:-18235332 | Msa1143040:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 7_4:+18235342 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 7_4:-18236012 | Msa1143040:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 7_4:-18235447 | Msa1143040:CDS |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 7_4:-18237946 | Msa1143040:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 7_4:-18235764 | Msa1143040:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 7_4:+18235841 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 7_4:-18237875 | Msa1143040:CDS |
| GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 7_4:-18235806 | Msa1143040:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 7_4:+18235840 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 7_4:-18237540 | Msa1143040:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 7_4:-18237658 | Msa1143040:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 7_4:+18236596 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 7_4:-18237675 | Msa1143040:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 7_4:+18235663 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 7_4:-18237792 | Msa1143040:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 7_4:-18237510 | Msa1143040:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 7_4:-18238021 | Msa1143040:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 7_4:-18236522 | Msa1143040:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 7_4:-18236358 | Msa1143040:CDS |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 7_4:-18235763 | Msa1143040:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 7_4:-18237826 | Msa1143040:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 7_4:-18237465 | Msa1143040:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 7_4:+18236010 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 7_4:+18237681 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 7_4:-18237888 | Msa1143040:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 7_4:-18237397 | Msa1143040:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 7_4:+18237570 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 7_4:-18237832 | Msa1143040:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 7_4:-18235996 | Msa1143040:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 7_4:+18236721 | None:intergenic |
| CTGTCTATGAACCATCTGTT+GGG | 0.491412 | 7_4:-18235371 | Msa1143040:CDS |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 7_4:-18236411 | Msa1143040:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 7_4:-18237384 | Msa1143040:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 7_4:-18236172 | Msa1143040:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 7_4:+18236092 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 7_4:-18237478 | Msa1143040:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 7_4:+18237292 | None:intergenic |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 7_4:+18237582 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 7_4:-18236325 | Msa1143040:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 7_4:-18235827 | Msa1143040:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 7_4:+18237426 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 7_4:-18236307 | Msa1143040:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | 7_4:-18237622 | Msa1143040:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 7_4:+18235847 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 7_4:+18236204 | None:intergenic |
| GAGGGATAATCATGCAGAGT+TGG | 0.522874 | 7_4:-18236153 | Msa1143040:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 7_4:-18235826 | Msa1143040:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 7_4:+18236015 | None:intergenic |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 7_4:-18235266 | Msa1143040:CDS |
| ACTTCAACAACGCACTAGCC+TGG | 0.534735 | 7_4:+18236576 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 7_4:-18237781 | Msa1143040:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 7_4:+18236209 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 7_4:-18235995 | Msa1143040:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 7_4:-18237780 | Msa1143040:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 7_4:-18237956 | Msa1143040:CDS |
| CTGAAATCCACCATGAATGT+TGG | 0.557140 | 7_4:-18235606 | Msa1143040:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 7_4:-18237330 | Msa1143040:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 7_4:-18237997 | Msa1143040:CDS |
| GCTGTCTATGAACCATCTGT+TGG | 0.568181 | 7_4:-18235372 | Msa1143040:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 7_4:-18237462 | Msa1143040:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 7_4:-18235520 | Msa1143040:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | 7_4:-18237623 | Msa1143040:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 7_4:+18236091 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 7_4:+18235360 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 7_4:-18235241 | Msa1143040:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 7_4:+18236070 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 7_4:-18238032 | Msa1143040:CDS |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 7_4:-18237471 | Msa1143040:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 7_4:-18235479 | Msa1143040:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 7_4:-18235484 | Msa1143040:CDS |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 7_4:-18235179 | Msa1143040:three_prime_UTR |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 7_4:-18235857 | Msa1143040:CDS |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 7_4:+18235404 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 7_4:-18237391 | Msa1143040:CDS |
| GAGGCTTTAACAATTTAAGC+GGG | 0.600751 | 7_4:-18235222 | Msa1143040:exon |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 7_4:+18235572 | None:intergenic |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 7_4:-18237477 | Msa1143040:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 7_4:-18237388 | Msa1143040:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 7_4:-18235517 | Msa1143040:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 7_4:-18236094 | Msa1143040:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 7_4:-18236009 | Msa1143040:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 7_4:+18237732 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 7_4:+18236356 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 7_4:-18237457 | Msa1143040:CDS |
| TGAGGCTTTAACAATTTAAG+CGG | 0.627823 | 7_4:-18235223 | Msa1143040:exon |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 7_4:+18235842 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 7_4:-18236521 | Msa1143040:CDS |
| TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 7_4:+18235599 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 7_4:-18236171 | Msa1143040:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 7_4:+18235621 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 7_4:+18236050 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 7_4:-18235495 | Msa1143040:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 7_4:+18235745 | None:intergenic |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 7_4:-18235762 | Msa1143040:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 7_4:-18235911 | Msa1143040:CDS |
| TCAAACCATATACACAGACC+AGG | 0.683597 | 7_4:-18236594 | Msa1143040:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 7_4:-18235910 | Msa1143040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATGTTATAAGTT+AGG | - | chr7_4:18237969-18237988 | Msa1143040:CDS | 10.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr7_4:18235273-18235292 | Msa1143040:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr7_4:18235329-18235348 | Msa1143040:CDS | 20.0% |
| !! | ATGTCTATAAGATATATAAG+TGG | - | chr7_4:18235538-18235557 | Msa1143040:CDS | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | - | chr7_4:18235539-18235558 | Msa1143040:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr7_4:18236128-18236147 | Msa1143040:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr7_4:18236156-18236175 | Msa1143040:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr7_4:18236778-18236797 | Msa1143040:intron | 20.0% |
| !! | AATTCTTGATTGTTATGTAT+TGG | - | chr7_4:18238067-18238086 | Msa1143040:five_prime_UTR | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr7_4:18235164-18235183 | Msa1143040:three_prime_UTR | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | - | chr7_4:18235205-18235224 | Msa1143040:three_prime_UTR | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr7_4:18235325-18235344 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr7_4:18235335-18235354 | Msa1143040:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr7_4:18235651-18235670 | Msa1143040:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr7_4:18235973-18235992 | Msa1143040:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr7_4:18235999-18236018 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr7_4:18236046-18236065 | Msa1143040:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr7_4:18236148-18236167 | Msa1143040:CDS | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr7_4:18236155-18236174 | Msa1143040:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr7_4:18236404-18236423 | Msa1143040:CDS | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr7_4:18236616-18236635 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr7_4:18236708-18236727 | Msa1143040:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr7_4:18236782-18236801 | Msa1143040:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr7_4:18236975-18236994 | Msa1143040:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr7_4:18237114-18237133 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr7_4:18237149-18237168 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr7_4:18237149-18237168 | Msa1143040:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr7_4:18237250-18237269 | Msa1143040:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr7_4:18237251-18237270 | Msa1143040:CDS | 25.0% |
| ATATTAACTTCATCTGAGAG+TGG | - | chr7_4:18235129-18235148 | Msa1143040:three_prime_UTR | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr7_4:18235215-18235234 | Msa1143040:exon | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr7_4:18235380-18235399 | Msa1143040:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr7_4:18235381-18235400 | Msa1143040:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr7_4:18235470-18235489 | Msa1143040:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr7_4:18235503-18235522 | Msa1143040:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr7_4:18235582-18235601 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | - | chr7_4:18235684-18235703 | Msa1143040:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr7_4:18235728-18235747 | Msa1143040:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr7_4:18235738-18235757 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr7_4:18235852-18235871 | None:intergenic | 30.0% | |
| !!! | AAGACATAGCCAGTATTTTT+TGG | - | chr7_4:18235886-18235905 | Msa1143040:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | - | chr7_4:18235887-18235906 | Msa1143040:CDS | 30.0% |
| CAACAAGATTATGCTCTATT+TGG | - | chr7_4:18235924-18235943 | Msa1143040:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr7_4:18235977-18235996 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr7_4:18235981-18236000 | Msa1143040:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr7_4:18236060-18236079 | Msa1143040:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr7_4:18236085-18236104 | Msa1143040:CDS | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr7_4:18236219-18236238 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr7_4:18236363-18236382 | Msa1143040:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr7_4:18236443-18236462 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr7_4:18236557-18236576 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr7_4:18236607-18236626 | Msa1143040:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr7_4:18236619-18236638 | Msa1143040:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr7_4:18236664-18236683 | Msa1143040:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr7_4:18236749-18236768 | Msa1143040:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr7_4:18236750-18236769 | Msa1143040:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr7_4:18236960-18236979 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr7_4:18237094-18237113 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr7_4:18237154-18237173 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr7_4:18237152-18237171 | Msa1143040:intron | 30.0% | |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr7_4:18237209-18237228 | Msa1143040:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr7_4:18237322-18237341 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr7_4:18237323-18237342 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr7_4:18237334-18237353 | Msa1143040:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr7_4:18237335-18237354 | Msa1143040:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr7_4:18237431-18237450 | Msa1143040:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr7_4:18237434-18237453 | Msa1143040:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr7_4:18237499-18237518 | Msa1143040:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | chr7_4:18237666-18237685 | Msa1143040:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr7_4:18237714-18237733 | Msa1143040:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr7_4:18237822-18237841 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr7_4:18237829-18237848 | Msa1143040:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr7_4:18237840-18237859 | None:intergenic | 30.0% | |
| ! | TGAGGCTTTAACAATTTAAG+CGG | - | chr7_4:18237938-18237957 | Msa1143040:CDS | 30.0% |
| ATAAGTTAGGAAAGATGATG+AGG | - | chr7_4:18237982-18238001 | Msa1143040:CDS | 30.0% | |
| ! | TGAGGCTTTAACTAAAAAAG+CGG | - | chr7_4:18238000-18238019 | Msa1143040:CDS | 30.0% |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | - | chr7_4:18235101-18235120 | Msa1143040:three_prime_UTR | 35.0% |
| ATAACACTGGATTCTCTGTT+AGG | - | chr7_4:18235286-18235305 | Msa1143040:CDS | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr7_4:18235369-18235388 | Msa1143040:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr7_4:18235406-18235425 | Msa1143040:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr7_4:18235447-18235466 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr7_4:18235464-18235483 | Msa1143040:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr7_4:18235469-18235488 | Msa1143040:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr7_4:18235621-18235640 | Msa1143040:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr7_4:18235683-18235702 | Msa1143040:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr7_4:18235764-18235783 | Msa1143040:CDS | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr7_4:18236066-18236085 | Msa1143040:CDS | 35.0% |
| CATAAATTCCAAGGCAAGAT+AGG | + | chr7_4:18236186-18236205 | None:intergenic | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | + | chr7_4:18236195-18236214 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr7_4:18236460-18236479 | Msa1143040:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr7_4:18236503-18236522 | Msa1143040:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr7_4:18236632-18236651 | Msa1143040:CDS | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | chr7_4:18236792-18236811 | Msa1143040:intron | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | - | chr7_4:18236836-18236855 | Msa1143040:intron | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr7_4:18236849-18236868 | Msa1143040:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr7_4:18236919-18236938 | Msa1143040:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr7_4:18236989-18237008 | Msa1143040:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr7_4:18236990-18237009 | Msa1143040:intron | 35.0% | |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr7_4:18237272-18237291 | Msa1143040:CDS | 35.0% |
| CGATTATGATCTTCAAACCT+TGG | + | chr7_4:18237324-18237343 | None:intergenic | 35.0% | |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr7_4:18237441-18237460 | Msa1143040:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr7_4:18237501-18237520 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr7_4:18237502-18237521 | Msa1143040:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr7_4:18237768-18237787 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | - | chr7_4:18237895-18237914 | Msa1143040:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr7_4:18237920-18237939 | Msa1143040:CDS | 35.0% | |
| ! | GAGGCTTTAACAATTTAAGC+GGG | - | chr7_4:18237939-18237958 | Msa1143040:CDS | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr7_4:18235140-18235159 | Msa1143040:three_prime_UTR | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr7_4:18235420-18235439 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr7_4:18235690-18235709 | Msa1143040:CDS | 40.0% |
| TCCATCTGCCCAAAAAATAC+TGG | + | chr7_4:18235898-18235917 | None:intergenic | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | - | chr7_4:18236199-18236218 | Msa1143040:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr7_4:18236309-18236328 | Msa1143040:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr7_4:18236313-18236332 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | - | chr7_4:18236427-18236446 | Msa1143040:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr7_4:18236568-18236587 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr7_4:18236567-18236586 | Msa1143040:CDS | 40.0% | |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr7_4:18236848-18236867 | Msa1143040:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr7_4:18236955-18236974 | None:intergenic | 40.0% | |
| TCATGCAGAGTTGGACTTTA+AGG | - | chr7_4:18237017-18237036 | Msa1143040:intron | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | - | chr7_4:18237165-18237184 | Msa1143040:intron | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr7_4:18237166-18237185 | Msa1143040:intron | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | - | chr7_4:18237304-18237323 | Msa1143040:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr7_4:18237397-18237416 | Msa1143040:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr7_4:18237398-18237417 | Msa1143040:CDS | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr7_4:18237444-18237463 | Msa1143040:CDS | 40.0% |
| GATTTCAGCTTATCGACAGA+CGG | + | chr7_4:18237543-18237562 | None:intergenic | 40.0% | |
| CTGAAATCCACCATGAATGT+TGG | - | chr7_4:18237555-18237574 | Msa1143040:CDS | 40.0% | |
| TTTAGTGCCAACATTCATGG+TGG | + | chr7_4:18237565-18237584 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr7_4:18237568-18237587 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr7_4:18237592-18237611 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr7_4:18237677-18237696 | Msa1143040:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr7_4:18237760-18237779 | None:intergenic | 40.0% |
| CTGTCTATGAACCATCTGTT+GGG | - | chr7_4:18237790-18237809 | Msa1143040:CDS | 40.0% | |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr7_4:18237846-18237865 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr7_4:18237908-18237927 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr7_4:18235432-18235451 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr7_4:18235474-18235493 | Msa1143040:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr7_4:18235483-18235502 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr7_4:18235486-18235505 | Msa1143040:CDS | 45.0% |
| CTCAAGTAGCACAAATGCTC+TGG | + | chr7_4:18235594-18235613 | None:intergenic | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr7_4:18235770-18235789 | Msa1143040:CDS | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr7_4:18235773-18235792 | Msa1143040:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr7_4:18235831-18235850 | Msa1143040:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr7_4:18235872-18235891 | None:intergenic | 45.0% | |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | - | chr7_4:18235894-18235913 | Msa1143040:CDS | 45.0% |
| ! | ACTAGCCTGGTCTGTGTATA+TGG | + | chr7_4:18236575-18236594 | None:intergenic | 45.0% |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr7_4:18236808-18236827 | None:intergenic | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr7_4:18236854-18236873 | Msa1143040:intron | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr7_4:18236871-18236890 | Msa1143040:intron | 45.0% |
| GAGGGATAATCATGCAGAGT+TGG | - | chr7_4:18237008-18237027 | Msa1143040:intron | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr7_4:18237067-18237086 | Msa1143040:intron | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr7_4:18237317-18237336 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr7_4:18237399-18237418 | Msa1143040:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr7_4:18237419-18237438 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr7_4:18237689-18237708 | Msa1143040:CDS | 45.0% | |
| GCTGTCTATGAACCATCTGT+TGG | - | chr7_4:18237789-18237808 | Msa1143040:CDS | 45.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr7_4:18235696-18235715 | Msa1143040:CDS | 50.0% |
| TGGGTGATCCTATCTTGCCT+TGG | - | chr7_4:18236175-18236194 | Msa1143040:CDS | 50.0% | |
| ACTTCAACAACGCACTAGCC+TGG | + | chr7_4:18236588-18236607 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr7_4:18236639-18236658 | Msa1143040:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr7_4:18236640-18236659 | Msa1143040:CDS | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr7_4:18236803-18236822 | Msa1143040:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr7_4:18237072-18237091 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | - | chr7_4:18237355-18237374 | Msa1143040:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | chr7_4:18237641-18237660 | Msa1143040:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | chr7_4:18237682-18237701 | Msa1143040:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr7_4:18237804-18237823 | None:intergenic | 50.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr7_4:18235699-18235718 | Msa1143040:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr7_4:18235777-18235796 | Msa1143040:CDS | 55.0% |
| GGACCGCATAAGCTGACTGT+TGG | + | chr7_4:18237073-18237092 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr7_4:18237681-18237700 | Msa1143040:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr7_4:18237695-18237714 | Msa1143040:CDS | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr7_4:18235704-18235723 | Msa1143040:CDS | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | - | chr7_4:18237644-18237663 | Msa1143040:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 18235075 | 18238108 | 18235075 | ID=Msa1143040;Name=Msa1143040 |
| chr7_4 | mRNA | 18235075 | 18238108 | 18235075 | ID=Msa1143040-mRNA-1;Parent=Msa1143040;Name=Msa1143040-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|2|152|800 |
| chr7_4 | exon | 18235075 | 18236746 | 18235075 | ID=Msa1143040-mRNA-1:exon:4057;Parent=Msa1143040-mRNA-1 |
| chr7_4 | exon | 18237181 | 18238108 | 18237181 | ID=Msa1143040-mRNA-1:exon:4056;Parent=Msa1143040-mRNA-1 |
| chr7_4 | five_prime_UTR | 18238064 | 18238108 | 18238064 | ID=Msa1143040-mRNA-1:five_prime_utr;Parent=Msa1143040-mRNA-1 |
| chr7_4 | CDS | 18237181 | 18238063 | 18237181 | ID=Msa1143040-mRNA-1:cds;Parent=Msa1143040-mRNA-1 |
| chr7_4 | CDS | 18235227 | 18236746 | 18235227 | ID=Msa1143040-mRNA-1:cds;Parent=Msa1143040-mRNA-1 |
| chr7_4 | three_prime_UTR | 18235075 | 18235226 | 18235075 | ID=Msa1143040-mRNA-1:three_prime_utr;Parent=Msa1143040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
