Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144520 | AES89938.1 | 90.110 | 273 | 27 | 0 | 1 | 273 | 1 | 273 | 1.14e-170 | 482 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144520 | sp|Q9FXA3|BH095_ARATH | 31.474 | 251 | 108 | 6 | 73 | 267 | 59 | 301 | 2.34e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144520 | G7JG89 | 90.110 | 273 | 27 | 0 | 1 | 273 | 1 | 273 | 5.42e-171 | 482 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1144520 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144520 | MtrunA17_Chr4g0042511 | 89.300 | 243 | 26 | 0 | 1 | 243 | 1 | 243 | 3.11e-151 | 423 |
| Msa1144520 | MtrunA17_Chr4g0044621 | 46.429 | 308 | 116 | 9 | 1 | 267 | 1 | 300 | 1.52e-61 | 196 |
| Msa1144520 | MtrunA17_Chr4g0044611 | 47.312 | 279 | 110 | 8 | 1 | 243 | 1 | 278 | 1.76e-59 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144520 | AT1G49770.1 | 31.474 | 251 | 108 | 6 | 73 | 267 | 59 | 301 | 2.38e-25 | 102 |
Find 40 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCCATTTCTACATTT+TGG | 0.093907 | 7_4:+20643714 | None:intergenic |
| CCTCCACTGAAATTGCATTT+TGG | 0.191221 | 7_4:+20641467 | None:intergenic |
| TGACTTTAGATGATGATAAA+TGG | 0.249362 | 7_4:-20643835 | Msa1144520:CDS |
| AGCTAGCAGCAGGAGAAATT+AGG | 0.262683 | 7_4:-20641435 | Msa1144520:CDS |
| TTCATCTCCGCAAATGTTAA+AGG | 0.277405 | 7_4:+20642565 | None:intergenic |
| AATGGTTCTTTGTTCTCATT+TGG | 0.286563 | 7_4:+20643755 | None:intergenic |
| GCTAGCAGCAGGAGAAATTA+GGG | 0.304341 | 7_4:-20641434 | Msa1144520:CDS |
| CTCATTGATTCAATGTCTAA+TGG | 0.319505 | 7_4:+20643737 | None:intergenic |
| AACATCTTGTGCAATGATAA+TGG | 0.343823 | 7_4:-20642449 | Msa1144520:CDS |
| CACATTGCTTCTTATTCACT+AGG | 0.390758 | 7_4:+20643687 | None:intergenic |
| ATTTGAAACTTACATGGGCT+TGG | 0.392532 | 7_4:+20642411 | None:intergenic |
| AATGAGCCAAAATGTAGAAA+TGG | 0.410797 | 7_4:-20643720 | Msa1144520:CDS |
| AATGTTACCTTTAACATTTG+CGG | 0.450475 | 7_4:-20642572 | Msa1144520:CDS |
| GATTCCTCATCTTACTTACA+AGG | 0.453723 | 7_4:-20643510 | Msa1144520:intron |
| AAAACAAACTCTTGAAAAGC+TGG | 0.453918 | 7_4:-20642723 | Msa1144520:CDS |
| GATGAGGAATCAAATCTTGA+AGG | 0.457081 | 7_4:+20643522 | None:intergenic |
| ATTTGGTTTATCAGAAATGA+AGG | 0.457704 | 7_4:+20643772 | None:intergenic |
| AAAATTGTTGTCAACAAGCC+TGG | 0.495164 | 7_4:+20642512 | None:intergenic |
| ATGTGTGAAAATCAATCATC+GGG | 0.496092 | 7_4:-20643797 | Msa1144520:CDS |
| TAAGAAGCAATGTGAGGGAG+GGG | 0.496799 | 7_4:-20643678 | Msa1144520:CDS |
| ATTATCATTGCACAAGATGT+TGG | 0.497659 | 7_4:+20642451 | None:intergenic |
| ATGCACGTGCTGAGAGAGAA+AGG | 0.501549 | 7_4:-20643574 | Msa1144520:CDS |
| GAAAGTTACAAGCTAGCAGC+AGG | 0.519236 | 7_4:-20641445 | Msa1144520:CDS |
| AATAAGAAGCAATGTGAGGG+AGG | 0.525488 | 7_4:-20643680 | Msa1144520:CDS |
| ACATTGCTTCTTATTCACTA+GGG | 0.529713 | 7_4:+20643688 | None:intergenic |
| TTTGGTTTATCAGAAATGAA+GGG | 0.532763 | 7_4:+20643773 | None:intergenic |
| CATGTGTGAAAATCAATCAT+CGG | 0.538236 | 7_4:-20643798 | Msa1144520:CDS |
| CTTCACTGCTTCCTCCACAA+TGG | 0.569321 | 7_4:+20642760 | None:intergenic |
| TTTATCATCATCTAAAGTCA+TGG | 0.573233 | 7_4:+20643838 | None:intergenic |
| ATAAGAAGCAATGTGAGGGA+GGG | 0.586200 | 7_4:-20643679 | Msa1144520:CDS |
| TTGGTTTATCAGAAATGAAG+GGG | 0.597449 | 7_4:+20643774 | None:intergenic |
| TTTACCTTGTAAGTAAGATG+AGG | 0.598129 | 7_4:+20643506 | None:intergenic |
| GTGAATAAGAAGCAATGTGA+GGG | 0.611245 | 7_4:-20643683 | Msa1144520:CDS |
| CCAAAATGCAATTTCAGTGG+AGG | 0.613831 | 7_4:-20641467 | Msa1144520:CDS |
| AAGCCAAAATGCAATTTCAG+TGG | 0.614102 | 7_4:-20641470 | Msa1144520:CDS |
| ATATACACAACTAAGAAGCC+AGG | 0.619168 | 7_4:-20642530 | Msa1144520:CDS |
| GGTAGATTCTGTAACCATTG+TGG | 0.628284 | 7_4:-20642774 | Msa1144520:CDS |
| CTAGCAGCAGGAGAAATTAG+GGG | 0.636230 | 7_4:-20641433 | Msa1144520:CDS |
| AGATTCTGTAACCATTGTGG+AGG | 0.646571 | 7_4:-20642771 | Msa1144520:CDS |
| AGTGAATAAGAAGCAATGTG+AGG | 0.680971 | 7_4:-20643684 | Msa1144520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATGTTAAAAATGATA+AGG | - | chr7_4:20641623-20641642 | Msa1144520:intron | 10.0% |
| !! | TTAAATGTTAAAAATGATAA+GGG | - | chr7_4:20641624-20641643 | Msa1144520:intron | 10.0% |
| !! | ACAAAAAAAAAAAAAAAAGT+TGG | + | chr7_4:20643552-20643571 | None:intergenic | 10.0% |
| !! | TTTAAATGTTAAAAATGATA+AGG | - | chr7_4:20641623-20641642 | Msa1144520:intron | 10.0% |
| !! | TTAAATGTTAAAAATGATAA+GGG | - | chr7_4:20641624-20641643 | Msa1144520:intron | 10.0% |
| !! | ACAAAAAAAAAAAAAAAAGT+TGG | + | chr7_4:20643552-20643571 | None:intergenic | 10.0% |
| !! | TAAATGTTAAAAATGATAAG+GGG | - | chr7_4:20641625-20641644 | Msa1144520:intron | 15.0% |
| !!! | ATTACATTCATTTTTAAGAT+TGG | - | chr7_4:20641779-20641798 | Msa1144520:intron | 15.0% |
| !!! | ACAAAATTTTCATTGAAAAA+TGG | + | chr7_4:20641824-20641843 | None:intergenic | 15.0% |
| !! | AAAATTGAAAGGATAAAATT+AGG | + | chr7_4:20641903-20641922 | None:intergenic | 15.0% |
| !! | CTTTAACTAAATTCAAATAT+GGG | - | chr7_4:20642181-20642200 | Msa1144520:intron | 15.0% |
| !!! | TAGTAATTTAAAATTTAGAC+TGG | + | chr7_4:20642247-20642266 | None:intergenic | 15.0% |
| !!! | GTCTAAATTTTAAATTACTA+AGG | - | chr7_4:20642247-20642266 | Msa1144520:intron | 15.0% |
| !! | TAATACAACAAAAAAAAGTT+TGG | - | chr7_4:20642296-20642315 | Msa1144520:intron | 15.0% |
| !! | AATACAACAAAAAAAAGTTT+GGG | - | chr7_4:20642297-20642316 | Msa1144520:intron | 15.0% |
| !!! | GAGTTTTTCATTTTTTTTTT+TGG | + | chr7_4:20643654-20643673 | None:intergenic | 15.0% |
| !! | TAAATGTTAAAAATGATAAG+GGG | - | chr7_4:20641625-20641644 | Msa1144520:intron | 15.0% |
| !!! | ATTACATTCATTTTTAAGAT+TGG | - | chr7_4:20641779-20641798 | Msa1144520:intron | 15.0% |
| !!! | ACAAAATTTTCATTGAAAAA+TGG | + | chr7_4:20641824-20641843 | None:intergenic | 15.0% |
| !! | AAAATTGAAAGGATAAAATT+AGG | + | chr7_4:20641903-20641922 | None:intergenic | 15.0% |
| !! | CTTTAACTAAATTCAAATAT+GGG | - | chr7_4:20642181-20642200 | Msa1144520:intron | 15.0% |
| !!! | TAGTAATTTAAAATTTAGAC+TGG | + | chr7_4:20642247-20642266 | None:intergenic | 15.0% |
| !!! | GTCTAAATTTTAAATTACTA+AGG | - | chr7_4:20642247-20642266 | Msa1144520:intron | 15.0% |
| !! | TAATACAACAAAAAAAAGTT+TGG | - | chr7_4:20642296-20642315 | Msa1144520:intron | 15.0% |
| !! | AATACAACAAAAAAAAGTTT+GGG | - | chr7_4:20642297-20642316 | Msa1144520:intron | 15.0% |
| !!! | GAGTTTTTCATTTTTTTTTT+TGG | + | chr7_4:20643654-20643673 | None:intergenic | 15.0% |
| !!! | ATTTTTTATTCTTTGTACCA+TGG | - | chr7_4:20642004-20642023 | Msa1144520:intron | 20.0% |
| !! | GCTTTAACTAAATTCAAATA+TGG | - | chr7_4:20642180-20642199 | Msa1144520:intron | 20.0% |
| !!! | TAATTTAAAATTTAGACTGG+AGG | + | chr7_4:20642244-20642263 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTATTAATTCGT+TGG | + | chr7_4:20642290-20642309 | None:intergenic | 20.0% |
| !!! | TGCTTTGTATTTAATTTCTT+TGG | - | chr7_4:20642460-20642479 | Msa1144520:CDS | 20.0% |
| !!! | ATTGAATTTGAAACTTACAT+GGG | + | chr7_4:20642856-20642875 | None:intergenic | 20.0% |
| !!! | AATTGAATTTGAAACTTACA+TGG | + | chr7_4:20642857-20642876 | None:intergenic | 20.0% |
| !! | TCAATATATATGCTATGTTA+CGG | + | chr7_4:20643030-20643049 | None:intergenic | 20.0% |
| !!! | ATAAACTTTAGGTTTGTTTA+CGG | + | chr7_4:20643480-20643499 | None:intergenic | 20.0% |
| !!! | ATTTTTTATTCTTTGTACCA+TGG | - | chr7_4:20642004-20642023 | Msa1144520:intron | 20.0% |
| !! | GCTTTAACTAAATTCAAATA+TGG | - | chr7_4:20642180-20642199 | Msa1144520:intron | 20.0% |
| !!! | TAATTTAAAATTTAGACTGG+AGG | + | chr7_4:20642244-20642263 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTATTAATTCGT+TGG | + | chr7_4:20642290-20642309 | None:intergenic | 20.0% |
| !!! | TGCTTTGTATTTAATTTCTT+TGG | - | chr7_4:20642460-20642479 | Msa1144520:CDS | 20.0% |
| !!! | ATTGAATTTGAAACTTACAT+GGG | + | chr7_4:20642856-20642875 | None:intergenic | 20.0% |
| !!! | AATTGAATTTGAAACTTACA+TGG | + | chr7_4:20642857-20642876 | None:intergenic | 20.0% |
| !! | TCAATATATATGCTATGTTA+CGG | + | chr7_4:20643030-20643049 | None:intergenic | 20.0% |
| !!! | ATAAACTTTAGGTTTGTTTA+CGG | + | chr7_4:20643480-20643499 | None:intergenic | 20.0% |
| !! | TTTATCATCATCTAAAGTCA+TGG | + | chr7_4:20641424-20641443 | None:intergenic | 25.0% |
| ! | TGACTTTAGATGATGATAAA+TGG | - | chr7_4:20641424-20641443 | Msa1144520:CDS | 25.0% |
| !! | TTTGGTTTATCAGAAATGAA+GGG | + | chr7_4:20641489-20641508 | None:intergenic | 25.0% |
| !! | ATTTGGTTTATCAGAAATGA+AGG | + | chr7_4:20641490-20641509 | None:intergenic | 25.0% |
| !! | ATCAAAATTGAATCGATTCA+TGG | + | chr7_4:20642149-20642168 | None:intergenic | 25.0% |
| !!! | ATGAATCGATTCAATTTTGA+TGG | - | chr7_4:20642148-20642167 | Msa1144520:intron | 25.0% |
| !!! | ATGAATAATCGGTTTGAAAT+AGG | + | chr7_4:20642361-20642380 | None:intergenic | 25.0% |
| ! | ATTAAATCAATGTTACACCT+AGG | + | chr7_4:20642432-20642451 | None:intergenic | 25.0% |
| !! | TTGTATTTAATTTCTTTGGC+AGG | - | chr7_4:20642464-20642483 | Msa1144520:CDS | 25.0% |
| ! | AATGTTACCTTTAACATTTG+CGG | - | chr7_4:20642687-20642706 | Msa1144520:CDS | 25.0% |
| !! | CATTTCTTTTGACAAAAAAG+AGG | - | chr7_4:20643121-20643140 | Msa1144520:intron | 25.0% |
| !! | CATGGATCTTTATTTAAGAA+AGG | - | chr7_4:20643310-20643329 | Msa1144520:intron | 25.0% |
| !!! | TGTCATGAAAAGTTTTATTG+CGG | - | chr7_4:20643337-20643356 | Msa1144520:intron | 25.0% |
| !! | TAAACTTTAGGTTTGTTTAC+GGG | + | chr7_4:20643479-20643498 | None:intergenic | 25.0% |
| !! | TTAGCAAAATACTTTTCTTC+TGG | + | chr7_4:20643517-20643536 | None:intergenic | 25.0% |
| !! | TCTTTATTTCATTATCCATG+TGG | - | chr7_4:20643709-20643728 | Msa1144520:CDS | 25.0% |
| !! | TTTATCATCATCTAAAGTCA+TGG | + | chr7_4:20641424-20641443 | None:intergenic | 25.0% |
| ! | TGACTTTAGATGATGATAAA+TGG | - | chr7_4:20641424-20641443 | Msa1144520:CDS | 25.0% |
| !! | TTTGGTTTATCAGAAATGAA+GGG | + | chr7_4:20641489-20641508 | None:intergenic | 25.0% |
| !! | ATTTGGTTTATCAGAAATGA+AGG | + | chr7_4:20641490-20641509 | None:intergenic | 25.0% |
| !! | ATCAAAATTGAATCGATTCA+TGG | + | chr7_4:20642149-20642168 | None:intergenic | 25.0% |
| !!! | ATGAATCGATTCAATTTTGA+TGG | - | chr7_4:20642148-20642167 | Msa1144520:intron | 25.0% |
| !!! | ATGAATAATCGGTTTGAAAT+AGG | + | chr7_4:20642361-20642380 | None:intergenic | 25.0% |
| ! | ATTAAATCAATGTTACACCT+AGG | + | chr7_4:20642432-20642451 | None:intergenic | 25.0% |
| !! | TTGTATTTAATTTCTTTGGC+AGG | - | chr7_4:20642464-20642483 | Msa1144520:CDS | 25.0% |
| ! | AATGTTACCTTTAACATTTG+CGG | - | chr7_4:20642687-20642706 | Msa1144520:CDS | 25.0% |
| !! | CATTTCTTTTGACAAAAAAG+AGG | - | chr7_4:20643121-20643140 | Msa1144520:intron | 25.0% |
| !! | CATGGATCTTTATTTAAGAA+AGG | - | chr7_4:20643310-20643329 | Msa1144520:intron | 25.0% |
| !!! | TGTCATGAAAAGTTTTATTG+CGG | - | chr7_4:20643337-20643356 | Msa1144520:intron | 25.0% |
| !! | TAAACTTTAGGTTTGTTTAC+GGG | + | chr7_4:20643479-20643498 | None:intergenic | 25.0% |
| !! | TTAGCAAAATACTTTTCTTC+TGG | + | chr7_4:20643517-20643536 | None:intergenic | 25.0% |
| !! | TCTTTATTTCATTATCCATG+TGG | - | chr7_4:20643709-20643728 | Msa1144520:CDS | 25.0% |
| CATGTGTGAAAATCAATCAT+CGG | - | chr7_4:20641461-20641480 | Msa1144520:CDS | 30.0% | |
| ATGTGTGAAAATCAATCATC+GGG | - | chr7_4:20641462-20641481 | Msa1144520:CDS | 30.0% | |
| TTGGTTTATCAGAAATGAAG+GGG | + | chr7_4:20641488-20641507 | None:intergenic | 30.0% | |
| AATGGTTCTTTGTTCTCATT+TGG | + | chr7_4:20641507-20641526 | None:intergenic | 30.0% | |
| !! | CTCATTGATTCAATGTCTAA+TGG | + | chr7_4:20641525-20641544 | None:intergenic | 30.0% |
| AATGAGCCAAAATGTAGAAA+TGG | - | chr7_4:20641539-20641558 | Msa1144520:intron | 30.0% | |
| ! | CTTCTTCCATTTCTACATTT+TGG | + | chr7_4:20641548-20641567 | None:intergenic | 30.0% |
| ACATTGCTTCTTATTCACTA+GGG | + | chr7_4:20641574-20641593 | None:intergenic | 30.0% | |
| GAGAAAGGAGAAAAAAAATG+AGG | - | chr7_4:20641700-20641719 | Msa1144520:intron | 30.0% | |
| TTTACCTTGTAAGTAAGATG+AGG | + | chr7_4:20641756-20641775 | None:intergenic | 30.0% | |
| ! | TTTTTCTTGGATGATATCAG+CGG | + | chr7_4:20642074-20642093 | None:intergenic | 30.0% |
| ! | AATGACGTGCAAATTTTTCT+TGG | + | chr7_4:20642087-20642106 | None:intergenic | 30.0% |
| ! | AAAATTGAATCGATTCATGG+AGG | + | chr7_4:20642146-20642165 | None:intergenic | 30.0% |
| ACTAAATTCAAATATGGGCT+TGG | - | chr7_4:20642186-20642205 | Msa1144520:intron | 30.0% | |
| ATGTATATATAGCAACACCT+AGG | - | chr7_4:20642412-20642431 | Msa1144520:intron | 30.0% | |
| AAAACAAACTCTTGAAAAGC+TGG | - | chr7_4:20642536-20642555 | Msa1144520:CDS | 30.0% | |
| ATTATCATTGCACAAGATGT+TGG | + | chr7_4:20642811-20642830 | None:intergenic | 30.0% | |
| AACATCTTGTGCAATGATAA+TGG | - | chr7_4:20642810-20642829 | Msa1144520:intron | 30.0% | |
| CTAGTACTTGTAGAGTAATT+TGG | - | chr7_4:20642913-20642932 | Msa1144520:intron | 30.0% | |
| TCTTACATACTCTCTTCTAT+TGG | + | chr7_4:20642960-20642979 | None:intergenic | 30.0% | |
| CGGATTTAAACTGTGAATAA+TGG | + | chr7_4:20643010-20643029 | None:intergenic | 30.0% | |
| !! | AGAACTTTTGTGATTTGTGT+CGG | - | chr7_4:20643154-20643173 | Msa1144520:intron | 30.0% |
| TGTGCTCAAAATTAGTGTTT+AGG | - | chr7_4:20643185-20643204 | Msa1144520:intron | 30.0% | |
| GTGCTCAAAATTAGTGTTTA+GGG | - | chr7_4:20643186-20643205 | Msa1144520:intron | 30.0% | |
| TAAGTCTAAATGAGTGACTT+AGG | - | chr7_4:20643211-20643230 | Msa1144520:intron | 30.0% | |
| ! | GTGACTTAGGTTTTCTTTTT+TGG | - | chr7_4:20643224-20643243 | Msa1144520:intron | 30.0% |
| ACTTTGATGTCAATGATCAT+CGG | - | chr7_4:20643275-20643294 | Msa1144520:intron | 30.0% | |
| !! | AAGATAGACGCTTTTTGTTT+AGG | - | chr7_4:20643388-20643407 | Msa1144520:intron | 30.0% |
| GTAGTCAAAGGATAAACTTT+AGG | + | chr7_4:20643491-20643510 | None:intergenic | 30.0% | |
| AAAGTTTATCCTTTGACTAC+TGG | - | chr7_4:20643491-20643510 | Msa1144520:intron | 30.0% | |
| TTGAGTTATTTACATCCACA+TGG | + | chr7_4:20643727-20643746 | None:intergenic | 30.0% | |
| !! | TTGATTTGTGTTAATGTTGC+AGG | - | chr7_4:20643747-20643766 | Msa1144520:CDS | 30.0% |
| CATGTGTGAAAATCAATCAT+CGG | - | chr7_4:20641461-20641480 | Msa1144520:CDS | 30.0% | |
| ATGTGTGAAAATCAATCATC+GGG | - | chr7_4:20641462-20641481 | Msa1144520:CDS | 30.0% | |
| TTGGTTTATCAGAAATGAAG+GGG | + | chr7_4:20641488-20641507 | None:intergenic | 30.0% | |
| AATGGTTCTTTGTTCTCATT+TGG | + | chr7_4:20641507-20641526 | None:intergenic | 30.0% | |
| !! | CTCATTGATTCAATGTCTAA+TGG | + | chr7_4:20641525-20641544 | None:intergenic | 30.0% |
| AATGAGCCAAAATGTAGAAA+TGG | - | chr7_4:20641539-20641558 | Msa1144520:intron | 30.0% | |
| ! | CTTCTTCCATTTCTACATTT+TGG | + | chr7_4:20641548-20641567 | None:intergenic | 30.0% |
| ACATTGCTTCTTATTCACTA+GGG | + | chr7_4:20641574-20641593 | None:intergenic | 30.0% | |
| GAGAAAGGAGAAAAAAAATG+AGG | - | chr7_4:20641700-20641719 | Msa1144520:intron | 30.0% | |
| TTTACCTTGTAAGTAAGATG+AGG | + | chr7_4:20641756-20641775 | None:intergenic | 30.0% | |
| ! | TTTTTCTTGGATGATATCAG+CGG | + | chr7_4:20642074-20642093 | None:intergenic | 30.0% |
| ! | AATGACGTGCAAATTTTTCT+TGG | + | chr7_4:20642087-20642106 | None:intergenic | 30.0% |
| ! | AAAATTGAATCGATTCATGG+AGG | + | chr7_4:20642146-20642165 | None:intergenic | 30.0% |
| ACTAAATTCAAATATGGGCT+TGG | - | chr7_4:20642186-20642205 | Msa1144520:intron | 30.0% | |
| ATGTATATATAGCAACACCT+AGG | - | chr7_4:20642412-20642431 | Msa1144520:intron | 30.0% | |
| AAAACAAACTCTTGAAAAGC+TGG | - | chr7_4:20642536-20642555 | Msa1144520:CDS | 30.0% | |
| ATTATCATTGCACAAGATGT+TGG | + | chr7_4:20642811-20642830 | None:intergenic | 30.0% | |
| AACATCTTGTGCAATGATAA+TGG | - | chr7_4:20642810-20642829 | Msa1144520:intron | 30.0% | |
| CTAGTACTTGTAGAGTAATT+TGG | - | chr7_4:20642913-20642932 | Msa1144520:intron | 30.0% | |
| TCTTACATACTCTCTTCTAT+TGG | + | chr7_4:20642960-20642979 | None:intergenic | 30.0% | |
| CGGATTTAAACTGTGAATAA+TGG | + | chr7_4:20643010-20643029 | None:intergenic | 30.0% | |
| !! | AGAACTTTTGTGATTTGTGT+CGG | - | chr7_4:20643154-20643173 | Msa1144520:intron | 30.0% |
| TGTGCTCAAAATTAGTGTTT+AGG | - | chr7_4:20643185-20643204 | Msa1144520:intron | 30.0% | |
| GTGCTCAAAATTAGTGTTTA+GGG | - | chr7_4:20643186-20643205 | Msa1144520:intron | 30.0% | |
| TAAGTCTAAATGAGTGACTT+AGG | - | chr7_4:20643211-20643230 | Msa1144520:intron | 30.0% | |
| ! | GTGACTTAGGTTTTCTTTTT+TGG | - | chr7_4:20643224-20643243 | Msa1144520:intron | 30.0% |
| ACTTTGATGTCAATGATCAT+CGG | - | chr7_4:20643275-20643294 | Msa1144520:intron | 30.0% | |
| !! | AAGATAGACGCTTTTTGTTT+AGG | - | chr7_4:20643388-20643407 | Msa1144520:intron | 30.0% |
| GTAGTCAAAGGATAAACTTT+AGG | + | chr7_4:20643491-20643510 | None:intergenic | 30.0% | |
| AAAGTTTATCCTTTGACTAC+TGG | - | chr7_4:20643491-20643510 | Msa1144520:intron | 30.0% | |
| TTGAGTTATTTACATCCACA+TGG | + | chr7_4:20643727-20643746 | None:intergenic | 30.0% | |
| !! | TTGATTTGTGTTAATGTTGC+AGG | - | chr7_4:20643747-20643766 | Msa1144520:CDS | 30.0% |
| CACATTGCTTCTTATTCACT+AGG | + | chr7_4:20641575-20641594 | None:intergenic | 35.0% | |
| AGTGAATAAGAAGCAATGTG+AGG | - | chr7_4:20641575-20641594 | Msa1144520:intron | 35.0% | |
| GTGAATAAGAAGCAATGTGA+GGG | - | chr7_4:20641576-20641595 | Msa1144520:intron | 35.0% | |
| GATGAGGAATCAAATCTTGA+AGG | + | chr7_4:20641740-20641759 | None:intergenic | 35.0% | |
| GATTCCTCATCTTACTTACA+AGG | - | chr7_4:20641749-20641768 | Msa1144520:intron | 35.0% | |
| !! | CTTGGTGCACATTTTATGAA+AGG | + | chr7_4:20641861-20641880 | None:intergenic | 35.0% |
| TTTATTCTTTGTACCATGGC+AGG | - | chr7_4:20642008-20642027 | Msa1144520:intron | 35.0% | |
| CAACAAAAAAAAGTTTGGGC+AGG | - | chr7_4:20642301-20642320 | Msa1144520:intron | 35.0% | |
| !! | TAATCGGTTTGAAATAGGAG+CGG | + | chr7_4:20642356-20642375 | None:intergenic | 35.0% |
| !!! | TTTTAGTTTGAACTCGCAGA+TGG | - | chr7_4:20642620-20642639 | Msa1144520:CDS | 35.0% |
| TTCATCTCCGCAAATGTTAA+AGG | + | chr7_4:20642697-20642716 | None:intergenic | 35.0% | |
| ATATACACAACTAAGAAGCC+AGG | - | chr7_4:20642729-20642748 | Msa1144520:CDS | 35.0% | |
| AAAATTGTTGTCAACAAGCC+TGG | + | chr7_4:20642750-20642769 | None:intergenic | 35.0% | |
| ! | GACAACAATTTTTCATGCGA+TGG | - | chr7_4:20642758-20642777 | Msa1144520:CDS | 35.0% |
| ! | ATTTGAAACTTACATGGGCT+TGG | + | chr7_4:20642851-20642870 | None:intergenic | 35.0% |
| GTACTTGTAGAGTAATTTGG+AGG | - | chr7_4:20642916-20642935 | Msa1144520:intron | 35.0% | |
| CTCAAGCGAAATCGTAAAAA+TGG | + | chr7_4:20643094-20643113 | None:intergenic | 35.0% | |
| !!! | TTTTTTGGTCTCGATGTTGA+CGG | - | chr7_4:20643239-20643258 | Msa1144520:intron | 35.0% |
| CATCGGATTTATTTCAGTCA+TGG | - | chr7_4:20643292-20643311 | Msa1144520:intron | 35.0% | |
| TTCTTCCTTAGTCCTTTCTT+CGG | - | chr7_4:20643431-20643450 | Msa1144520:intron | 35.0% | |
| CATTATTGTTCTCCGAAGAA+AGG | + | chr7_4:20643446-20643465 | None:intergenic | 35.0% | |
| TTCTTCGGAGAACAATAATG+TGG | - | chr7_4:20643446-20643465 | Msa1144520:intron | 35.0% | |
| TCTTCGGAGAACAATAATGT+GGG | - | chr7_4:20643447-20643466 | Msa1144520:intron | 35.0% | |
| TAAAGATGCATGTGTACTCA+CGG | + | chr7_4:20643695-20643714 | None:intergenic | 35.0% | |
| AAGCCAAAATGCAATTTCAG+TGG | - | chr7_4:20643789-20643808 | Msa1144520:CDS | 35.0% | |
| CACATTGCTTCTTATTCACT+AGG | + | chr7_4:20641575-20641594 | None:intergenic | 35.0% | |
| AGTGAATAAGAAGCAATGTG+AGG | - | chr7_4:20641575-20641594 | Msa1144520:intron | 35.0% | |
| GTGAATAAGAAGCAATGTGA+GGG | - | chr7_4:20641576-20641595 | Msa1144520:intron | 35.0% | |
| GATGAGGAATCAAATCTTGA+AGG | + | chr7_4:20641740-20641759 | None:intergenic | 35.0% | |
| GATTCCTCATCTTACTTACA+AGG | - | chr7_4:20641749-20641768 | Msa1144520:intron | 35.0% | |
| !! | CTTGGTGCACATTTTATGAA+AGG | + | chr7_4:20641861-20641880 | None:intergenic | 35.0% |
| TTTATTCTTTGTACCATGGC+AGG | - | chr7_4:20642008-20642027 | Msa1144520:intron | 35.0% | |
| CAACAAAAAAAAGTTTGGGC+AGG | - | chr7_4:20642301-20642320 | Msa1144520:intron | 35.0% | |
| !! | TAATCGGTTTGAAATAGGAG+CGG | + | chr7_4:20642356-20642375 | None:intergenic | 35.0% |
| !!! | TTTTAGTTTGAACTCGCAGA+TGG | - | chr7_4:20642620-20642639 | Msa1144520:CDS | 35.0% |
| TTCATCTCCGCAAATGTTAA+AGG | + | chr7_4:20642697-20642716 | None:intergenic | 35.0% | |
| ATATACACAACTAAGAAGCC+AGG | - | chr7_4:20642729-20642748 | Msa1144520:CDS | 35.0% | |
| AAAATTGTTGTCAACAAGCC+TGG | + | chr7_4:20642750-20642769 | None:intergenic | 35.0% | |
| ! | GACAACAATTTTTCATGCGA+TGG | - | chr7_4:20642758-20642777 | Msa1144520:CDS | 35.0% |
| ! | ATTTGAAACTTACATGGGCT+TGG | + | chr7_4:20642851-20642870 | None:intergenic | 35.0% |
| GTACTTGTAGAGTAATTTGG+AGG | - | chr7_4:20642916-20642935 | Msa1144520:intron | 35.0% | |
| CTCAAGCGAAATCGTAAAAA+TGG | + | chr7_4:20643094-20643113 | None:intergenic | 35.0% | |
| !!! | TTTTTTGGTCTCGATGTTGA+CGG | - | chr7_4:20643239-20643258 | Msa1144520:intron | 35.0% |
| CATCGGATTTATTTCAGTCA+TGG | - | chr7_4:20643292-20643311 | Msa1144520:intron | 35.0% | |
| TTCTTCCTTAGTCCTTTCTT+CGG | - | chr7_4:20643431-20643450 | Msa1144520:intron | 35.0% | |
| CATTATTGTTCTCCGAAGAA+AGG | + | chr7_4:20643446-20643465 | None:intergenic | 35.0% | |
| TTCTTCGGAGAACAATAATG+TGG | - | chr7_4:20643446-20643465 | Msa1144520:intron | 35.0% | |
| TCTTCGGAGAACAATAATGT+GGG | - | chr7_4:20643447-20643466 | Msa1144520:intron | 35.0% | |
| TAAAGATGCATGTGTACTCA+CGG | + | chr7_4:20643695-20643714 | None:intergenic | 35.0% | |
| AAGCCAAAATGCAATTTCAG+TGG | - | chr7_4:20643789-20643808 | Msa1144520:CDS | 35.0% | |
| AATAAGAAGCAATGTGAGGG+AGG | - | chr7_4:20641579-20641598 | Msa1144520:intron | 40.0% | |
| ATAAGAAGCAATGTGAGGGA+GGG | - | chr7_4:20641580-20641599 | Msa1144520:intron | 40.0% | |
| AAAGTAAACTTGTCCTGCCA+TGG | + | chr7_4:20642024-20642043 | None:intergenic | 40.0% | |
| ! | TGGGCTTGGATTTTTCTCAA+TGG | - | chr7_4:20642200-20642219 | Msa1144520:intron | 40.0% |
| CAAAAAAAAGTTTGGGCAGG+AGG | - | chr7_4:20642304-20642323 | Msa1144520:intron | 40.0% | |
| !! | AATCGGTTTGAAATAGGAGC+GGG | + | chr7_4:20642355-20642374 | None:intergenic | 40.0% |
| GGTAGATTCTGTAACCATTG+TGG | - | chr7_4:20642485-20642504 | Msa1144520:CDS | 40.0% | |
| AGATTCTGTAACCATTGTGG+AGG | - | chr7_4:20642488-20642507 | Msa1144520:CDS | 40.0% | |
| ! | CACGAGCTTTTCAACAAATG+TGG | - | chr7_4:20642655-20642674 | Msa1144520:CDS | 40.0% |
| AAGAATGTGTGTGTTCGAGA+AGG | - | chr7_4:20642976-20642995 | Msa1144520:intron | 40.0% | |
| ! | CCTCCACTGAAATTGCATTT+TGG | + | chr7_4:20643795-20643814 | None:intergenic | 40.0% |
| CCAAAATGCAATTTCAGTGG+AGG | - | chr7_4:20643792-20643811 | Msa1144520:CDS | 40.0% | |
| AATAAGAAGCAATGTGAGGG+AGG | - | chr7_4:20641579-20641598 | Msa1144520:intron | 40.0% | |
| ATAAGAAGCAATGTGAGGGA+GGG | - | chr7_4:20641580-20641599 | Msa1144520:intron | 40.0% | |
| AAAGTAAACTTGTCCTGCCA+TGG | + | chr7_4:20642024-20642043 | None:intergenic | 40.0% | |
| ! | TGGGCTTGGATTTTTCTCAA+TGG | - | chr7_4:20642200-20642219 | Msa1144520:intron | 40.0% |
| CAAAAAAAAGTTTGGGCAGG+AGG | - | chr7_4:20642304-20642323 | Msa1144520:intron | 40.0% | |
| !! | AATCGGTTTGAAATAGGAGC+GGG | + | chr7_4:20642355-20642374 | None:intergenic | 40.0% |
| GGTAGATTCTGTAACCATTG+TGG | - | chr7_4:20642485-20642504 | Msa1144520:CDS | 40.0% | |
| AGATTCTGTAACCATTGTGG+AGG | - | chr7_4:20642488-20642507 | Msa1144520:CDS | 40.0% | |
| ! | CACGAGCTTTTCAACAAATG+TGG | - | chr7_4:20642655-20642674 | Msa1144520:CDS | 40.0% |
| AAGAATGTGTGTGTTCGAGA+AGG | - | chr7_4:20642976-20642995 | Msa1144520:intron | 40.0% | |
| ! | CCTCCACTGAAATTGCATTT+TGG | + | chr7_4:20643795-20643814 | None:intergenic | 40.0% |
| CCAAAATGCAATTTCAGTGG+AGG | - | chr7_4:20643792-20643811 | Msa1144520:CDS | 40.0% | |
| TAAGAAGCAATGTGAGGGAG+GGG | - | chr7_4:20641581-20641600 | Msa1144520:intron | 45.0% | |
| CAAAACACTCTTCGAGGACT+TGG | + | chr7_4:20641879-20641898 | None:intergenic | 45.0% | |
| !!! | CAAGTCCTCGAAGAGTGTTT+TGG | - | chr7_4:20641877-20641896 | Msa1144520:intron | 45.0% |
| TTAGGCCAAAACACTCTTCG+AGG | + | chr7_4:20641885-20641904 | None:intergenic | 45.0% | |
| ATGACACATCCACGACACTA+CGG | + | chr7_4:20643365-20643384 | None:intergenic | 45.0% | |
| GTTCTCCGAAGAAAGGACTA+AGG | + | chr7_4:20643439-20643458 | None:intergenic | 45.0% | |
| TTCTTCTGGCCAGTAGTCAA+AGG | + | chr7_4:20643503-20643522 | None:intergenic | 45.0% | |
| GAAAGTTACAAGCTAGCAGC+AGG | - | chr7_4:20643814-20643833 | Msa1144520:CDS | 45.0% | |
| AGCTAGCAGCAGGAGAAATT+AGG | - | chr7_4:20643824-20643843 | Msa1144520:CDS | 45.0% | |
| GCTAGCAGCAGGAGAAATTA+GGG | - | chr7_4:20643825-20643844 | Msa1144520:CDS | 45.0% | |
| CTAGCAGCAGGAGAAATTAG+GGG | - | chr7_4:20643826-20643845 | Msa1144520:CDS | 45.0% | |
| TAAGAAGCAATGTGAGGGAG+GGG | - | chr7_4:20641581-20641600 | Msa1144520:intron | 45.0% | |
| CAAAACACTCTTCGAGGACT+TGG | + | chr7_4:20641879-20641898 | None:intergenic | 45.0% | |
| !!! | CAAGTCCTCGAAGAGTGTTT+TGG | - | chr7_4:20641877-20641896 | Msa1144520:intron | 45.0% |
| TTAGGCCAAAACACTCTTCG+AGG | + | chr7_4:20641885-20641904 | None:intergenic | 45.0% | |
| ATGACACATCCACGACACTA+CGG | + | chr7_4:20643365-20643384 | None:intergenic | 45.0% | |
| GTTCTCCGAAGAAAGGACTA+AGG | + | chr7_4:20643439-20643458 | None:intergenic | 45.0% | |
| TTCTTCTGGCCAGTAGTCAA+AGG | + | chr7_4:20643503-20643522 | None:intergenic | 45.0% | |
| GAAAGTTACAAGCTAGCAGC+AGG | - | chr7_4:20643814-20643833 | Msa1144520:CDS | 45.0% | |
| AGCTAGCAGCAGGAGAAATT+AGG | - | chr7_4:20643824-20643843 | Msa1144520:CDS | 45.0% | |
| GCTAGCAGCAGGAGAAATTA+GGG | - | chr7_4:20643825-20643844 | Msa1144520:CDS | 45.0% | |
| CTAGCAGCAGGAGAAATTAG+GGG | - | chr7_4:20643826-20643845 | Msa1144520:CDS | 45.0% | |
| !! | AAAAAAAAAAAAAAATTGAA+AGG | + | chr7_4:20641914-20641933 | None:intergenic | 5.0% |
| !!! | ATAAATTTTATATGAATAAT+CGG | + | chr7_4:20642372-20642391 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAAAATTGAA+AGG | + | chr7_4:20641914-20641933 | None:intergenic | 5.0% |
| !!! | ATAAATTTTATATGAATAAT+CGG | + | chr7_4:20642372-20642391 | None:intergenic | 5.0% |
| ATGCACGTGCTGAGAGAGAA+AGG | - | chr7_4:20641685-20641704 | Msa1144520:intron | 50.0% | |
| TGCACGTCATTCGACATGCA+TGG | - | chr7_4:20642096-20642115 | Msa1144520:intron | 50.0% | |
| TTGGGCAGGAGGTTGAGATT+AGG | - | chr7_4:20642315-20642334 | Msa1144520:intron | 50.0% | |
| TGGGCAGGAGGTTGAGATTA+GGG | - | chr7_4:20642316-20642335 | Msa1144520:intron | 50.0% | |
| CTTCACTGCTTCCTCCACAA+TGG | + | chr7_4:20642502-20642521 | None:intergenic | 50.0% | |
| TGACACATCCACGACACTAC+GGG | + | chr7_4:20643364-20643383 | None:intergenic | 50.0% | |
| ATGCACGTGCTGAGAGAGAA+AGG | - | chr7_4:20641685-20641704 | Msa1144520:intron | 50.0% | |
| TGCACGTCATTCGACATGCA+TGG | - | chr7_4:20642096-20642115 | Msa1144520:intron | 50.0% | |
| TTGGGCAGGAGGTTGAGATT+AGG | - | chr7_4:20642315-20642334 | Msa1144520:intron | 50.0% | |
| TGGGCAGGAGGTTGAGATTA+GGG | - | chr7_4:20642316-20642335 | Msa1144520:intron | 50.0% | |
| CTTCACTGCTTCCTCCACAA+TGG | + | chr7_4:20642502-20642521 | None:intergenic | 50.0% | |
| TGACACATCCACGACACTAC+GGG | + | chr7_4:20643364-20643383 | None:intergenic | 50.0% | |
| GACACATCCACGACACTACG+GGG | + | chr7_4:20643363-20643382 | None:intergenic | 55.0% | |
| GACACATCCACGACACTACG+GGG | + | chr7_4:20643363-20643382 | None:intergenic | 55.0% | |
| ATTGCGGCCCCGTAGTGTCG+TGG | - | chr7_4:20643353-20643372 | Msa1144520:intron | 65.0% | |
| ATTGCGGCCCCGTAGTGTCG+TGG | - | chr7_4:20643353-20643372 | Msa1144520:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 20641417 | 20643864 | 20641417 | ID=Msa1144520;Name=Msa1144520 |
| chr7_4 | mRNA | 20641417 | 20643864 | 20641417 | ID=Msa1144520-mRNA-1;Parent=Msa1144520;Name=Msa1144520-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|273 |
| chr7_4 | exon | 20643511 | 20643864 | 20643511 | ID=Msa1144520-mRNA-1:exon:4955;Parent=Msa1144520-mRNA-1 |
| chr7_4 | exon | 20642424 | 20642795 | 20642424 | ID=Msa1144520-mRNA-1:exon:4954;Parent=Msa1144520-mRNA-1 |
| chr7_4 | exon | 20641417 | 20641512 | 20641417 | ID=Msa1144520-mRNA-1:exon:4953;Parent=Msa1144520-mRNA-1 |
| chr7_4 | CDS | 20643511 | 20643864 | 20643511 | ID=Msa1144520-mRNA-1:cds;Parent=Msa1144520-mRNA-1 |
| chr7_4 | CDS | 20642424 | 20642795 | 20642424 | ID=Msa1144520-mRNA-1:cds;Parent=Msa1144520-mRNA-1 |
| chr7_4 | CDS | 20641417 | 20641512 | 20641417 | ID=Msa1144520-mRNA-1:cds;Parent=Msa1144520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
