AlfalfaGEDB | Msa1144860

M. sativa cultivar zhongmu-4 / Msa1144860

KEGG: K12606|K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1144860	XP_039685140.1	88.889	171	19	0	1	171	1	171	1.37e-102	304

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1144860	sp\|Q6P819\|CNOT9_XENTR	65.385	130	45	0	43	172	28	157	1.33e-51	170

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1144860	G7KNV7	88.304	171	20	0	1	171	1	171	3.74e-101	304

TFs/TRs:

Gene ID	Type	Classification
Msa1144860	TR	Rcd1-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1144860	MtrunA17_Chr8g0392781	88.889	171	19	0	1	171	1	171	1.07e-103	302
Msa1144860	MtrunA17_Chr6g0477171	88.496	113	13	0	59	171	45	157	2.41e-66	204
Msa1144860	MtrunA17_Chr7g0224601	71.341	164	43	2	11	170	1	164	5.76e-66	204
Msa1144860	MtrunA17_Chr3g0099561	73.684	133	35	0	38	170	26	158	3.43e-60	189
Msa1144860	MtrunA17_Chr1g0177151	57.558	172	69	1	1	172	1	168	3.49e-59	186
Msa1144860	MtrunA17_Chr5g0444621	48.649	148	68	2	27	172	13	154	1.39e-33	120
Msa1144860	MtrunA17_Chr3g0083821	69.048	84	26	0	81	164	37	120	1.90e-33	115
Msa1144860	MtrunA17_Chr6g0477181	86.441	59	8	0	1	59	1	59	3.80e-30	106
Msa1144860	MtrunA17_Chr5g0444631	67.925	53	17	0	112	164	4	56	2.30e-19	77.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1144860	AT3G20800.1	63.006	173	50	3	6	170	5	171	8.68e-62	194
Msa1144860	AT5G12980.1	66.165	133	45	0	38	170	35	167	3.17e-55	177

Find 31 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CACCACAGTTTGAGTATTTA+AGG	0.083275	7_4:+21360474	Msa1144860:CDS
CAGAACTTGCATCTTTATTA+TGG	0.166706	7_4:+21359399	Msa1144860:CDS
TCTTTATTATGGAATTCTTT+TGG	0.317731	7_4:+21359410	Msa1144860:CDS
CATAATAAAGATGCAAGTTC+TGG	0.318259	7_4:-21359398	None:intergenic
GAATTATCTCGCTTAAAATA+AGG	0.331775	7_4:-21361199	None:intergenic
AGGTAACCCAATGACTTCTT+TGG	0.357869	7_4:-21361179	None:intergenic
GTTCCATGCAAGCCATCGTT+TGG	0.360758	7_4:-21357666	None:intergenic
TAACGTTCTTGCACTACTTC+AGG	0.385082	7_4:+21359900	Msa1144860:CDS
TGCTTAAGCAACATGGAGAT+TGG	0.389189	7_4:+21361227	Msa1144860:CDS
GTTAACACCAAAGAAGTCAT+TGG	0.411687	7_4:+21361172	Msa1144860:CDS
TTTGCAAGTCTTGGAGTCAT+TGG	0.412772	7_4:+21360497	Msa1144860:CDS
TTCCATGCAAGCCATCGTTT+GGG	0.414939	7_4:-21357665	None:intergenic
TGCCCAAACGATGGCTTGCA+TGG	0.424700	7_4:+21357663	Msa1144860:CDS
TATTTAAGGTTTGCAAGTCT+TGG	0.428903	7_4:+21360488	Msa1144860:CDS
TTCTTCATTGTGAGCGAATG+AGG	0.447112	7_4:-21357589	None:intergenic
GCAAGCCATCGTTTGGGCAG+TGG	0.471268	7_4:-21357659	None:intergenic
ACAAAGATGTTGTTCTTGAA+TGG	0.471978	7_4:+21360151	Msa1144860:CDS
TTAACACCAAAGAAGTCATT+GGG	0.480982	7_4:+21361173	Msa1144860:CDS
TTCATGTAATACCTTCACTA+AGG	0.484633	7_4:-21360522	None:intergenic
TCTTCGTCTGTAGCTCCTCT+TGG	0.510704	7_4:+21357616	Msa1144860:CDS
CGCTCTTCGTGTGCTCTCCA+AGG	0.522456	7_4:+21357729	Msa1144860:CDS
TCCATTGTGCTTAAGCAACA+TGG	0.523480	7_4:+21361220	Msa1144860:CDS
AACCTTAAATACTCAAACTG+TGG	0.565441	7_4:-21360476	None:intergenic
AGTCATTGGCGCCTTAGTGA+AGG	0.595063	7_4:+21360511	Msa1144860:CDS
TCCATGTTGCTTAAGCACAA+TGG	0.605260	7_4:-21361221	None:intergenic
AAGAACCACTGCCCAAACGA+TGG	0.643808	7_4:+21357654	Msa1144860:CDS
AGGAAGGGATACAAATACAA+AGG	0.647299	7_4:-21360434	None:intergenic
GATTGTGCTAGAGTAAGAGT+CGG	0.683303	7_4:-21359865	None:intergenic
GATTGCTGAGTTCAATAACA+AGG	0.688379	7_4:-21357690	None:intergenic
GATTGAGTAGAAGTACCAAG+AGG	0.696831	7_4:-21357631	None:intergenic
TGTGCTAGAGTAAGAGTCGG+TGG	0.715335	7_4:-21359862	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTTAAAATAATATAATTT+GGG	-	chr7_4:21360729-21360748	None:intergenic	0.0%
!!!	AATTTTAAAATAATATAATT+TGG	-	chr7_4:21360730-21360749	None:intergenic	0.0%
!!	AAAAAAATTTAAAGATACAT+CGG	-	chr7_4:21358143-21358162	None:intergenic	10.0%
!!	AAAAAAAAATAAAGTATAAG+TGG	-	chr7_4:21358434-21358453	None:intergenic	10.0%
!!!	CTTTATTTTTTTTTAAAACT+CGG	+	chr7_4:21358440-21358459	Msa1144860:intron	10.0%
!!!	TCTTTTTATAAAAATATCTA+AGG	-	chr7_4:21358713-21358732	None:intergenic	10.0%
!!!	TGACATTTTATATTATAATT+TGG	+	chr7_4:21359287-21359306	Msa1144860:intron	10.0%
!!!	ATTTTATATTATAATTTGGT+TGG	+	chr7_4:21359291-21359310	Msa1144860:intron	10.0%
!!	TGAATGAAATTATATATTAT+TGG	+	chr7_4:21359467-21359486	Msa1144860:intron	10.0%
!!	AAAACATATAAACATAATTT+GGG	-	chr7_4:21359555-21359574	None:intergenic	10.0%
!!!	ATTGATTTTTAGTTATATTT+GGG	-	chr7_4:21359991-21360010	None:intergenic	10.0%
!!!	TTTTAAATTTGAGTATATTA+TGG	+	chr7_4:21360251-21360270	Msa1144860:intron	10.0%
!!	TTAAATACAAAATATAATCA+TGG	+	chr7_4:21360295-21360314	Msa1144860:intron	10.0%
!!	TAAATACAAAATATAATCAT+GGG	+	chr7_4:21360296-21360315	Msa1144860:intron	10.0%
!!	AAATTTGTATCAATAAATTA+TGG	+	chr7_4:21360628-21360647	Msa1144860:intron	10.0%
!!!	ATTAAAATTAGAAGTATAAG+TGG	-	chr7_4:21358297-21358316	None:intergenic	15.0%
!!	ATACTTTACTTAATTATACT+TGG	+	chr7_4:21358654-21358673	Msa1144860:intron	15.0%
!!	TAATTTGGGAAAAAATTATA+TGG	-	chr7_4:21359541-21359560	None:intergenic	15.0%
!!	GAAAACATATAAACATAATT+TGG	-	chr7_4:21359556-21359575	None:intergenic	15.0%
!!!	TTTTACAATTTAAAAAAACG+AGG	+	chr7_4:21359610-21359629	Msa1144860:intron	15.0%
!!!	GTGTTTTAAAAATGATTTAT+TGG	+	chr7_4:21359768-21359787	Msa1144860:intron	15.0%
!!!	TTGATTTTTAGTTATATTTG+GGG	-	chr7_4:21359990-21360009	None:intergenic	15.0%
!!!	GATTGATTTTTAGTTATATT+TGG	-	chr7_4:21359992-21360011	None:intergenic	15.0%
!!	AAATACAAAATATAATCATG+GGG	+	chr7_4:21360297-21360316	Msa1144860:intron	15.0%
!!!	AGAAAAAAAATCTAAAATCA+TGG	-	chr7_4:21361092-21361111	None:intergenic	15.0%
!!	AACCAATTTCTGATAAAATT+AGG	+	chr7_4:21358027-21358046	Msa1144860:intron	20.0%
!!!	ATCCTAATTTTATCAGAAAT+TGG	-	chr7_4:21358032-21358051	None:intergenic	20.0%
!!	AAAAATAAAGTATAAGTGGA+TGG	-	chr7_4:21358430-21358449	None:intergenic	20.0%
!!!	TAATATCTTGTTATGTGTTA+TGG	+	chr7_4:21358805-21358824	Msa1144860:intron	20.0%
!!	AAACAAGTAATTAACATATC+AGG	-	chr7_4:21359155-21359174	None:intergenic	20.0%
!!!	GTTTTTTCTTTAACATTCAA+AGG	+	chr7_4:21359171-21359190	Msa1144860:intron	20.0%
!!!	TTCTATCTTTTATATTTCAG+AGG	+	chr7_4:21359363-21359382	Msa1144860:intron	20.0%
!!!	TCTTTATTATGGAATTCTTT+TGG	+	chr7_4:21359410-21359429	Msa1144860:CDS	20.0%
!!!	ATTATATATTATTGGCTAGT+TGG	+	chr7_4:21359475-21359494	Msa1144860:intron	20.0%
!!	CTTAAAAGTTAAAACTATCA+AGG	-	chr7_4:21359741-21359760	None:intergenic	20.0%
!!!	GTTTTAACTTTTAAGCATTT+AGG	+	chr7_4:21359746-21359765	Msa1144860:intron	20.0%
!!!	TAATGTTTTTTTTCTTCTTC+AGG	+	chr7_4:21359810-21359829	Msa1144860:intron	20.0%
!!!	TGATTTTTAGTTATATTTGG+GGG	-	chr7_4:21359989-21360008	None:intergenic	20.0%
!!	ATAGAAAAGTTTATCATTTG+TGG	-	chr7_4:21360038-21360057	None:intergenic	20.0%
!!	TAAATTTGAGTATATTATGG+AGG	+	chr7_4:21360254-21360273	Msa1144860:intron	20.0%
!!	AATACAAAATATAATCATGG+GGG	+	chr7_4:21360298-21360317	Msa1144860:intron	20.0%
!!!	TCTTTTAATGAGAAAAATCT+AGG	-	chr7_4:21360343-21360362	None:intergenic	20.0%
!!	GAAAATGTAAGTGTAAATAA+TGG	-	chr7_4:21360396-21360415	None:intergenic	20.0%
!!	AAATAATATAATTTGGGCTT+TGG	-	chr7_4:21360723-21360742	None:intergenic	20.0%
!!!	TAAAAGTGATTAGTGTTTTT+TGG	-	chr7_4:21360857-21360876	None:intergenic	20.0%
!!!	ATATCAACTTTTTATAAGAC+TGG	-	chr7_4:21360981-21361000	None:intergenic	20.0%
!!	CAAAAGGAAATTATTACAAA+TGG	-	chr7_4:21361132-21361151	None:intergenic	20.0%
!	TTTAAGAGTTAGATTACCTA+TGG	-	chr7_4:21358197-21358216	None:intergenic	25.0%
!!	AAATTAGAAGTATAAGTGGA+TGG	-	chr7_4:21358293-21358312	None:intergenic	25.0%
!	TTTAAGAGTTAGATTACCTA+TGG	-	chr7_4:21358197-21358216	None:intergenic	25.0%
!	AGAGAAACAATAGTGATAAA+AGG	+	chr7_4:21359013-21359032	Msa1144860:intron	25.0%
!	AGAGAATAGACTAACAAAAT+TGG	+	chr7_4:21359048-21359067	Msa1144860:intron	25.0%
!	TAGTGTGACTTCAAAAAATT+AGG	+	chr7_4:21359127-21359146	Msa1144860:intron	25.0%
!!	TATTATTGCAGTACTTTTAC+AGG	+	chr7_4:21359433-21359452	Msa1144860:CDS	25.0%
!	TTGAATCTTGTGTTTAGTAT+AGG	+	chr7_4:21359948-21359967	Msa1144860:intron	25.0%
!!!	ACATAAGAAAAAAGTGTTAG+AGG	-	chr7_4:21360099-21360118	None:intergenic	25.0%
!!!	TTGTCTTTTGTTTTAAGGAA+GGG	-	chr7_4:21360452-21360471	None:intergenic	25.0%
!	TTATGTAAATGACACATTCA+AGG	-	chr7_4:21360609-21360628	None:intergenic	25.0%
!!!	GAGTTACAATATAACTTGTT+AGG	+	chr7_4:21361012-21361031	Msa1144860:intron	25.0%
!!	AATTTCCTTTTGTTGATACT+TGG	+	chr7_4:21361140-21361159	Msa1144860:intron	25.0%
!	GAATTATCTCGCTTAAAATA+AGG	-	chr7_4:21361202-21361221	None:intergenic	25.0%
	TAATCGAAGATAGATTCGTA+AGG	-	chr7_4:21357756-21357775	None:intergenic	30.0%
	TTGTTAGCCATTCTAAATAG+TGG	+	chr7_4:21357889-21357908	Msa1144860:intron	30.0%
	TGTTAGCCATTCTAAATAGT+GGG	+	chr7_4:21357890-21357909	Msa1144860:intron	30.0%
	TTCTATCCCACTATTTAGAA+TGG	-	chr7_4:21357899-21357918	None:intergenic	30.0%
	TAGGATTATTATCTGACACA+TGG	+	chr7_4:21358046-21358065	Msa1144860:intron	30.0%
	TTACCTATGGATTTAGTGAA+AGG	-	chr7_4:21358184-21358203	None:intergenic	30.0%
	CGTGTATCAATTCAAGTATA+GGG	-	chr7_4:21358259-21358278	None:intergenic	30.0%
	ACGTGTATCAATTCAAGTAT+AGG	-	chr7_4:21358260-21358279	None:intergenic	30.0%
	TTACCTATGGATTTAGTGAA+AGG	-	chr7_4:21358184-21358203	None:intergenic	30.0%
	CGTGTATCAATTCAAGTATA+GGG	-	chr7_4:21358259-21358278	None:intergenic	30.0%
	ACGTGTATCAATTCAAGTAT+AGG	-	chr7_4:21358260-21358279	None:intergenic	30.0%
	AAGTATAAGAACACCCATTT+GGG	-	chr7_4:21358640-21358659	None:intergenic	30.0%
	AAAGTATAAGAACACCCATT+TGG	-	chr7_4:21358641-21358660	None:intergenic	30.0%
	TGACAAACATACGTTAAAAC+TGG	-	chr7_4:21358767-21358786	None:intergenic	30.0%
	GAAAGAGAGATTACATGAAA+TGG	+	chr7_4:21358942-21358961	Msa1144860:intron	30.0%
!!	GAGTTTGATACTTAAGTTGA+TGG	+	chr7_4:21358981-21359000	Msa1144860:intron	30.0%
	CATAATAAAGATGCAAGTTC+TGG	-	chr7_4:21359401-21359420	None:intergenic	30.0%
	CAGAACTTGCATCTTTATTA+TGG	+	chr7_4:21359399-21359418	Msa1144860:CDS	30.0%
!	TATGTTTTCACTATAGTGTG+TGG	+	chr7_4:21360114-21360133	Msa1144860:intron	30.0%
	ACAAAGATGTTGTTCTTGAA+TGG	+	chr7_4:21360151-21360170	Msa1144860:CDS	30.0%
!!!	CTTGTCTTTTGTTTTAAGGA+AGG	-	chr7_4:21360453-21360472	None:intergenic	30.0%
!!!	GTGACTTGTCTTTTGTTTTA+AGG	-	chr7_4:21360457-21360476	None:intergenic	30.0%
	AACCTTAAATACTCAAACTG+TGG	-	chr7_4:21360479-21360498	None:intergenic	30.0%
!	TATTTAAGGTTTGCAAGTCT+TGG	+	chr7_4:21360488-21360507	Msa1144860:CDS	30.0%
	TTCATGTAATACCTTCACTA+AGG	-	chr7_4:21360525-21360544	None:intergenic	30.0%
!!	TGTGTTATTCTTAGTTTTCG+TGG	-	chr7_4:21360681-21360700	None:intergenic	30.0%
	CTAGTTAAGAGTCAGATAAT+TGG	+	chr7_4:21360893-21360912	Msa1144860:intron	30.0%
!!!	TTGTAGTTTTATCATGCTCT+TGG	+	chr7_4:21360921-21360940	Msa1144860:intron	30.0%
	GAATACCAAGTATCAACAAA+AGG	-	chr7_4:21361148-21361167	None:intergenic	30.0%
	TTAACACCAAAGAAGTCATT+GGG	+	chr7_4:21361173-21361192	Msa1144860:CDS	30.0%
	GATTGCTGAGTTCAATAACA+AGG	-	chr7_4:21357693-21357712	None:intergenic	35.0%
	CTTTCAAGAGGACACAAATA+GGG	-	chr7_4:21358114-21358133	None:intergenic	35.0%
	ACTTTCAAGAGGACACAAAT+AGG	-	chr7_4:21358115-21358134	None:intergenic	35.0%
	ATGCCTTTCACTAAATCCAT+AGG	+	chr7_4:21358178-21358197	Msa1144860:intron	35.0%
!	AGAGGAGCACATTTAGTTTA+GGG	-	chr7_4:21358232-21358251	None:intergenic	35.0%
	ATGCCTTTCACTAAATCCAT+AGG	+	chr7_4:21358178-21358197	Msa1144860:intron	35.0%
!	AGAGGAGCACATTTAGTTTA+GGG	-	chr7_4:21358232-21358251	None:intergenic	35.0%
	AGTATAAGAACACCCATTTG+GGG	-	chr7_4:21358639-21358658	None:intergenic	35.0%
!	CTCTGAGAGGTATAAAAATG+AGG	+	chr7_4:21358916-21358935	Msa1144860:intron	35.0%
	AGTCAACCAATCTAAGTTGT+TGG	+	chr7_4:21359086-21359105	Msa1144860:intron	35.0%
	AACCAATCTAAGTTGTTGGA+TGG	+	chr7_4:21359090-21359109	Msa1144860:intron	35.0%
	TTCCATCCAACAACTTAGAT+TGG	-	chr7_4:21359095-21359114	None:intergenic	35.0%
	AAAAACGAGGCATGATTATG+AGG	+	chr7_4:21359623-21359642	Msa1144860:intron	35.0%
	AAAACGAGGCATGATTATGA+GGG	+	chr7_4:21359624-21359643	Msa1144860:intron	35.0%
	AGGAAGGGATACAAATACAA+AGG	-	chr7_4:21360437-21360456	None:intergenic	35.0%
	CACCACAGTTTGAGTATTTA+AGG	+	chr7_4:21360474-21360493	Msa1144860:CDS	35.0%
!	TTTTCGTGGAATCATTTTCG+TGG	-	chr7_4:21360667-21360686	None:intergenic	35.0%
!	ATCGTGGTTTTTGTGGAATT+AGG	+	chr7_4:21360786-21360805	Msa1144860:intron	35.0%
	TGTTGATACTTGGTATTCAC+AGG	+	chr7_4:21361150-21361169	Msa1144860:intron	35.0%
	GTTAACACCAAAGAAGTCAT+TGG	+	chr7_4:21361172-21361191	Msa1144860:CDS	35.0%
	TTCTTCATTGTGAGCGAATG+AGG	-	chr7_4:21357592-21357611	None:intergenic	40.0%
!!	GATTGAGTAGAAGTACCAAG+AGG	-	chr7_4:21357634-21357653	None:intergenic	40.0%
	AGATAGATTCGTAAGGACCT+TGG	-	chr7_4:21357749-21357768	None:intergenic	40.0%
	TTATCTGACACATGGATCAC+AGG	+	chr7_4:21358054-21358073	Msa1144860:intron	40.0%
	CATCGGTAGAAACTTTCAAG+AGG	-	chr7_4:21358126-21358145	None:intergenic	40.0%
!	GAGAGGAGCACATTTAGTTT+AGG	-	chr7_4:21358233-21358252	None:intergenic	40.0%
!	GAGAGGAGCACATTTAGTTT+AGG	-	chr7_4:21358233-21358252	None:intergenic	40.0%
!	CTTTGCTATGGCTTAGAACA+GGG	-	chr7_4:21358516-21358535	None:intergenic	40.0%
!	ATTACCTCTGGTGCCAATTT+CGG	-	chr7_4:21358558-21358577	None:intergenic	40.0%
	AACATTACTTAGCGCGTTCA+GGG	-	chr7_4:21359797-21359816	None:intergenic	40.0%
	AAACATTACTTAGCGCGTTC+AGG	-	chr7_4:21359798-21359817	None:intergenic	40.0%
	GATTGTGCTAGAGTAAGAGT+CGG	-	chr7_4:21359868-21359887	None:intergenic	40.0%
	TAACGTTCTTGCACTACTTC+AGG	+	chr7_4:21359900-21359919	Msa1144860:CDS	40.0%
	TTTGCAAGTCTTGGAGTCAT+TGG	+	chr7_4:21360497-21360516	Msa1144860:CDS	40.0%
!	TTTTGTGGAATTAGGCTTCG+TGG	+	chr7_4:21360794-21360813	Msa1144860:intron	40.0%
	AGGTAACCCAATGACTTCTT+TGG	-	chr7_4:21361182-21361201	None:intergenic	40.0%
	TCCATTGTGCTTAAGCAACA+TGG	+	chr7_4:21361220-21361239	Msa1144860:CDS	40.0%
!	TCCATGTTGCTTAAGCACAA+TGG	-	chr7_4:21361224-21361243	None:intergenic	40.0%
	TGCTTAAGCAACATGGAGAT+TGG	+	chr7_4:21361227-21361246	Msa1144860:CDS	40.0%
	TTCCATGCAAGCCATCGTTT+GGG	-	chr7_4:21357668-21357687	None:intergenic	45.0%
!!	AGAGCGTTTTCTCGAAGATC+AGG	-	chr7_4:21357715-21357734	None:intergenic	45.0%
	TGTGATCCATGTTGTGACGT+TGG	+	chr7_4:21357923-21357942	Msa1144860:intron	45.0%
	GATTTGCCAACGTCACAACA+TGG	-	chr7_4:21357932-21357951	None:intergenic	45.0%
	TGTTGTGACGTTGGCAAATC+AGG	+	chr7_4:21357932-21357951	Msa1144860:intron	45.0%
	ATTCAAGTATAGGGCGAGAG+AGG	-	chr7_4:21358250-21358269	None:intergenic	45.0%
	ATTCAAGTATAGGGCGAGAG+AGG	-	chr7_4:21358250-21358269	None:intergenic	45.0%
	AAAACTCGGTATCCGATCCA+AGG	+	chr7_4:21358454-21358473	Msa1144860:intron	45.0%
!	GCTTTGCTATGGCTTAGAAC+AGG	-	chr7_4:21358517-21358536	None:intergenic	45.0%
	AGCCATAGCAAAGCTCTGTA+TGG	+	chr7_4:21358523-21358542	Msa1144860:intron	45.0%
	GTCCATACAGAGCTTTGCTA+TGG	-	chr7_4:21358528-21358547	None:intergenic	45.0%
!!	TAGTGGTTGGTTTGGGATCT+TGG	-	chr7_4:21358610-21358629	None:intergenic	45.0%
	AAGATCCCAAACCAACCACT+AGG	+	chr7_4:21358609-21358628	Msa1144860:intron	45.0%
!!	GTTGACCTAGTGGTTGGTTT+GGG	-	chr7_4:21358617-21358636	None:intergenic	45.0%
	TCACACTTCATGACTCTGAG+AGG	+	chr7_4:21358903-21358922	Msa1144860:intron	45.0%
	CTTTGGCAGCAATCATGGTA+GGG	-	chr7_4:21360706-21360725	None:intergenic	45.0%
	CACGATGAGACACAATGCAA+CGG	-	chr7_4:21360772-21360791	None:intergenic	45.0%
!	GTGTCTCATCGTGGTTTTTG+TGG	+	chr7_4:21360779-21360798	Msa1144860:intron	45.0%
	AATTAGGCTTCGTGGCATCT+AGG	+	chr7_4:21360802-21360821	Msa1144860:intron	45.0%
	TCTTCGTCTGTAGCTCCTCT+TGG	+	chr7_4:21357616-21357635	Msa1144860:CDS	50.0%
	AAGAACCACTGCCCAAACGA+TGG	+	chr7_4:21357654-21357673	Msa1144860:CDS	50.0%
	GTTCCATGCAAGCCATCGTT+TGG	-	chr7_4:21357669-21357688	None:intergenic	50.0%
	ATGGACTTGCCCACCGAAAT+TGG	+	chr7_4:21358542-21358561	Msa1144860:intron	50.0%
	GTCTCAGGTTCGATTACCTC+TGG	-	chr7_4:21358570-21358589	None:intergenic	50.0%
	ATCGAACCTGAGACCTTGAG+AGG	+	chr7_4:21358576-21358595	Msa1144860:intron	50.0%
!	GGTTGACCTAGTGGTTGGTT+TGG	-	chr7_4:21358618-21358637	None:intergenic	50.0%
!	TTTGGGGTTGACCTAGTGGT+TGG	-	chr7_4:21358623-21358642	None:intergenic	50.0%
	ACCACTAGGTCAACCCCAAA+TGG	+	chr7_4:21358623-21358642	Msa1144860:intron	50.0%
	CCACTAGGTCAACCCCAAAT+GGG	+	chr7_4:21358624-21358643	Msa1144860:intron	50.0%
	TGTGCTAGAGTAAGAGTCGG+TGG	-	chr7_4:21359865-21359884	None:intergenic	50.0%
	AGTCATTGGCGCCTTAGTGA+AGG	+	chr7_4:21360511-21360530	Msa1144860:CDS	50.0%
	GCTTTGGCAGCAATCATGGT+AGG	-	chr7_4:21360707-21360726	None:intergenic	50.0%
!	TTGGGCTTTGGCAGCAATCA+TGG	-	chr7_4:21360711-21360730	None:intergenic	50.0%
	CGTTGCATTGTGTCTCATCG+TGG	+	chr7_4:21360770-21360789	Msa1144860:intron	50.0%
!	TGCCCAAACGATGGCTTGCA+TGG	+	chr7_4:21357663-21357682	Msa1144860:CDS	55.0%
	TGGTCAGTCGGTCCTTGGAT+CGG	-	chr7_4:21358469-21358488	None:intergenic	55.0%
!!	GAGCAGTGGGATTGGTCAGT+CGG	-	chr7_4:21358481-21358500	None:intergenic	55.0%
	CCAATCCCACTGCTCACTTG+CGG	+	chr7_4:21358486-21358505	Msa1144860:intron	55.0%
	CAATCCCACTGCTCACTTGC+GGG	+	chr7_4:21358487-21358506	Msa1144860:intron	55.0%
	AATCCCACTGCTCACTTGCG+GGG	+	chr7_4:21358488-21358507	Msa1144860:intron	55.0%
!	CCTCTGGTGCCAATTTCGGT+GGG	-	chr7_4:21358554-21358573	None:intergenic	55.0%
!	ACCTCTGGTGCCAATTTCGG+TGG	-	chr7_4:21358555-21358574	None:intergenic	55.0%
	TGTGCTCCTCTCAAGGTCTC+AGG	-	chr7_4:21358585-21358604	None:intergenic	55.0%
	CTTGGAGTGTGCTCCTCTCA+AGG	-	chr7_4:21358592-21358611	None:intergenic	55.0%
!	CCCATTTGGGGTTGACCTAG+TGG	-	chr7_4:21358627-21358646	None:intergenic	55.0%
	GCAAGCCATCGTTTGGGCAG+TGG	-	chr7_4:21357662-21357681	None:intergenic	60.0%
	CGCTCTTCGTGTGCTCTCCA+AGG	+	chr7_4:21357729-21357748	Msa1144860:CDS	60.0%
!!	GGGATTGGTCAGTCGGTCCT+TGG	-	chr7_4:21358474-21358493	None:intergenic	60.0%
	CCGCAAGTGAGCAGTGGGAT+TGG	-	chr7_4:21358489-21358508	None:intergenic	60.0%
	ATCCCACTGCTCACTTGCGG+GGG	+	chr7_4:21358489-21358508	Msa1144860:intron	60.0%
	CCCACCGAAATTGGCACCAG+AGG	+	chr7_4:21358551-21358570	Msa1144860:intron	60.0%
	TCCCACTGCTCACTTGCGGG+GGG	+	chr7_4:21358490-21358509	Msa1144860:intron	65.0%
	GCCCCCCGCAAGTGAGCAGT+GGG	-	chr7_4:21358494-21358513	None:intergenic	70.0%
	GGCCCCCCGCAAGTGAGCAG+TGG	-	chr7_4:21358495-21358514	None:intergenic	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	21357574	21361255	21357574	ID=Msa1144860;Name=Msa1144860
chr7_4	mRNA	21357574	21361255	21357574	ID=Msa1144860-mRNA-1;Parent=Msa1144860;Name=Msa1144860-mRNA-1;_AED=0.14;_eAED=0.24;_QI=0\|0\|0\|1\|1\|1\|6\|0\|190
chr7_4	exon	21357574	21357750	21357574	ID=Msa1144860-mRNA-1:exon:5117;Parent=Msa1144860-mRNA-1
chr7_4	exon	21359383	21359454	21359383	ID=Msa1144860-mRNA-1:exon:5118;Parent=Msa1144860-mRNA-1
chr7_4	exon	21359832	21359921	21359832	ID=Msa1144860-mRNA-1:exon:5119;Parent=Msa1144860-mRNA-1
chr7_4	exon	21360130	21360172	21360130	ID=Msa1144860-mRNA-1:exon:5120;Parent=Msa1144860-mRNA-1
chr7_4	exon	21360426	21360532	21360426	ID=Msa1144860-mRNA-1:exon:5121;Parent=Msa1144860-mRNA-1
chr7_4	exon	21361172	21361255	21361172	ID=Msa1144860-mRNA-1:exon:5122;Parent=Msa1144860-mRNA-1
chr7_4	CDS	21357574	21357750	21357574	ID=Msa1144860-mRNA-1:cds;Parent=Msa1144860-mRNA-1
chr7_4	CDS	21359383	21359454	21359383	ID=Msa1144860-mRNA-1:cds;Parent=Msa1144860-mRNA-1
chr7_4	CDS	21359832	21359921	21359832	ID=Msa1144860-mRNA-1:cds;Parent=Msa1144860-mRNA-1
chr7_4	CDS	21360130	21360172	21360130	ID=Msa1144860-mRNA-1:cds;Parent=Msa1144860-mRNA-1
chr7_4	CDS	21360426	21360532	21360426	ID=Msa1144860-mRNA-1:cds;Parent=Msa1144860-mRNA-1
chr7_4	CDS	21361172	21361255	21361172	ID=Msa1144860-mRNA-1:cds;Parent=Msa1144860-mRNA-1

Gene Sequence

>Msa1144860

ATGGACAAAATTTCTCCTCATTCGCTCACAATGAAGAATGAATCTTCGTCTGTAGCTCCTCTTGGTACTTCTACTCAATCAAGAACCACTGCCCAAACGATGGCTTGCATGGAACGCCTTGTTATTGAACTCAGCAATCCTGATCTTCGAGAAAACGCTCTTCGTGTGCTCTCCAAGAGGTATGAGTTATCTCCAGAACTTGCATCTTTATTATGGAATTCTTTTGGTATTATTGCAGTACTTTTACAGGAAATAACTTCAATATATTGTACTCTTTCACCACCGACTCTTACTCTAGCACAATCAACTCGAGTGTGTAACGTTCTTGCACTACTTCAGTGTGTGGCATCTCACTCTGAAACAAAGATGTTGTTCTTGAATGCTAGCATACCTTTGTATTTGTATCCCTTCCTTAAAACAAAAGACAAGTCACCACAGTTTGAGTATTTAAGGTTTGCAAGTCTTGGAGTCATTGGCGCCTTAGTGAAGGTTAACACCAAAGAAGTCATTGGGTTACCTTATTTTAAGCGAGATAATTCCATTGTGCTTAAGCAACATGGAGATTGGAAATGA

Protein sequence

>Msa1144860

MDKISPHSLTMKNESSSVAPLGTSTQSRTTAQTMACMERLVIELSNPDLRENALRVLSKRYELSPELASLLWNSFGIIAVLLQEITSIYCTLSPPTLTLAQSTRVCNVLALLQCVASHSETKMLFLNASIPLYLYPFLKTKDKSPQFEYLRFASLGVIGALVKVNTKEVIGLPYFKRDNSIVLKQHGDWK*