Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146040 | RHN44987.1 | 94.466 | 253 | 14 | 0 | 1 | 253 | 1 | 253 | 4.39e-178 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146040 | sp|Q7ZZ00|ZN511_DANRE | 34.199 | 231 | 130 | 5 | 13 | 230 | 49 | 270 | 4.58e-35 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146040 | A0A396H268 | 94.466 | 253 | 14 | 0 | 1 | 253 | 1 | 253 | 2.10e-178 | 499 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1146040 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146040 | MtrunA17_Chr7g0225371 | 94.466 | 253 | 14 | 0 | 1 | 253 | 1 | 253 | 0.0 | 499 |
| Msa1146040 | MtrunA17_Chr7g0225251 | 94.681 | 188 | 10 | 0 | 66 | 253 | 5 | 192 | 3.59e-133 | 373 |
| Msa1146040 | MtrunA17_Chr7g0225341 | 75.676 | 111 | 25 | 2 | 136 | 245 | 8 | 117 | 1.81e-50 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146040 | AT5G14140.1 | 61.943 | 247 | 85 | 4 | 11 | 249 | 14 | 259 | 6.61e-107 | 310 |
Find 79 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTCATGATTCTTTCTTTC+AGG | 0.183557 | 7_4:-23132478 | Msa1146040:CDS |
| GAAGTCTTCTGTCCCATTGC+TGG | 0.271752 | 7_4:-23132627 | Msa1146040:CDS |
| GTGTTGGAATTTACGAGAAA+TGG | 0.316280 | 7_4:+23133917 | None:intergenic |
| TGCTGGGTGTGGAGCACGTT+TGG | 0.380745 | 7_4:-23132610 | Msa1146040:CDS |
| ATGGGCACAAAACCTATGTT+AGG | 0.380856 | 7_4:+23131009 | None:intergenic |
| TTTATCCTGTGTTTCTTTGA+AGG | 0.386367 | 7_4:+23131436 | None:intergenic |
| TTCTGTCCCATTGCTGGGTG+TGG | 0.397837 | 7_4:-23132621 | Msa1146040:CDS |
| CAAAACGGAAAATTTGAATC+CGG | 0.397939 | 7_4:+23133945 | None:intergenic |
| ATGACATGCCTTTGGTGTTA+CGG | 0.399250 | 7_4:+23131272 | None:intergenic |
| GTAAGCTTATTTCTTAGTAA+TGG | 0.406814 | 7_4:+23131201 | None:intergenic |
| TCTCAAAAGGAGGATACTTC+AGG | 0.418130 | 7_4:-23131394 | Msa1146040:CDS |
| CGAGAAATGGGTTTCCAAAA+CGG | 0.423576 | 7_4:+23133930 | None:intergenic |
| ATGCAGTATGTCTTGCATTA+TGG | 0.426087 | 7_4:+23132562 | None:intergenic |
| ACGAGAACTTCTTGTCAAAC+AGG | 0.437900 | 7_4:-23133862 | Msa1146040:intron |
| TGTTGGAATTTACGAGAAAT+GGG | 0.440882 | 7_4:+23133918 | None:intergenic |
| ACTCCTTCCTCTATCAGCTT+TGG | 0.443914 | 7_4:-23131298 | Msa1146040:CDS |
| ATTGCTTATTGATCGATCTT+CGG | 0.450297 | 7_4:-23131153 | Msa1146040:three_prime_UTR |
| GACTCTAGAACACACAGAAC+AGG | 0.456459 | 7_4:+23132539 | None:intergenic |
| AAGTCTTCTGTCCCATTGCT+GGG | 0.459510 | 7_4:-23132626 | Msa1146040:CDS |
| TGTTTAGCTTATATTCACTT+TGG | 0.465598 | 7_4:-23130928 | Msa1146040:three_prime_UTR |
| AGCACGTTTGGCTTCAATTG+AGG | 0.468334 | 7_4:-23132598 | Msa1146040:CDS |
| TATGTAAGTGTCCCTAACAT+AGG | 0.476678 | 7_4:-23131021 | Msa1146040:three_prime_UTR |
| GGAGGATACTTCAGGAATGA+TGG | 0.477569 | 7_4:-23131386 | Msa1146040:CDS |
| AGGGACAAATGACATGCCTT+TGG | 0.478422 | 7_4:+23131264 | None:intergenic |
| GGAAGTGGAAAATCAAAATC+CGG | 0.482912 | 7_4:-23133964 | Msa1146040:CDS |
| CTGGCACCATTTGCAAAGCT+TGG | 0.484495 | 7_4:+23130824 | None:intergenic |
| AAAGAAAGAATCATGAGCTT+CGG | 0.485050 | 7_4:+23132482 | None:intergenic |
| ATTAGCAGATATAATTTGCA+TGG | 0.496292 | 7_4:+23130990 | None:intergenic |
| TGACAAGAAGTTCTCGTTCG+AGG | 0.497533 | 7_4:+23133868 | None:intergenic |
| AATTCAAAAGCTACAAAAGT+AGG | 0.497972 | 7_4:-23131522 | Msa1146040:CDS |
| CGTGCTCCACACCCAGCAAT+GGG | 0.505775 | 7_4:+23132615 | None:intergenic |
| ACAAGAGAAGGAACAGTTTG+AGG | 0.507962 | 7_4:-23133696 | Msa1146040:CDS |
| ATCAGAAAATAGAATCATGC+TGG | 0.508550 | 7_4:-23131070 | Msa1146040:three_prime_UTR |
| CGAGCTGTTCAGCGTGGGAA+GGG | 0.513540 | 7_4:-23131241 | Msa1146040:CDS |
| TTGCAAAATTGCTCTATACC+AGG | 0.513899 | 7_4:-23131119 | Msa1146040:three_prime_UTR |
| TCGAGCTGTTCAGCGTGGGA+AGG | 0.516848 | 7_4:-23131242 | Msa1146040:CDS |
| GATTCACCTTTCTTCGCTAT+CGG | 0.518189 | 7_4:-23133894 | Msa1146040:CDS |
| ACCAGCAAGGAAAATGAGAA+TGG | 0.523445 | 7_4:+23133999 | None:intergenic |
| TTAATTTGAAAAGGTTGCGT+TGG | 0.527267 | 7_4:-23133732 | Msa1146040:intron |
| GAATGCTTAGTGGAAGGTTG+CGG | 0.528977 | 7_4:-23131550 | Msa1146040:CDS |
| ATATTAGTATGAATGCTTAG+TGG | 0.534106 | 7_4:-23131560 | Msa1146040:intron |
| CGAAGAAAGGTGAATCGTGT+TGG | 0.535030 | 7_4:+23133901 | None:intergenic |
| TTCCCACGCTGAACAGCTCG+AGG | 0.542891 | 7_4:+23131244 | None:intergenic |
| GCGTGGGAAGGGATCTAACT+CGG | 0.545220 | 7_4:-23131230 | Msa1146040:CDS |
| TGAATACCAAGCTTTGCAAA+TGG | 0.550337 | 7_4:-23130830 | Msa1146040:three_prime_UTR |
| TCCCTCGAGCTGTTCAGCGT+GGG | 0.551783 | 7_4:-23131246 | Msa1146040:CDS |
| ATTTGAATTAACACAAGAGA+AGG | 0.553168 | 7_4:-23133708 | Msa1146040:CDS |
| GGAAGTGGAAAATGAAGCTA+TGG | 0.555991 | 7_4:-23131365 | Msa1146040:CDS |
| CTCTGCCTTCAAAGAAACAC+AGG | 0.556458 | 7_4:-23131441 | Msa1146040:CDS |
| GGTTGAACCAACGATGGAAG+TGG | 0.559043 | 7_4:-23133979 | Msa1146040:exon |
| ACGTGCTCCACACCCAGCAA+TGG | 0.559174 | 7_4:+23132614 | None:intergenic |
| ACGGCGACCAAAGCTGATAG+AGG | 0.559633 | 7_4:+23131291 | None:intergenic |
| TACTTCAGGAATGATGGAAG+TGG | 0.560728 | 7_4:-23131380 | Msa1146040:CDS |
| TGGGCACAAAACCTATGTTA+GGG | 0.565786 | 7_4:+23131010 | None:intergenic |
| TAGTATGAATGCTTAGTGGA+AGG | 0.567041 | 7_4:-23131556 | Msa1146040:CDS |
| AATAAATGTCAACAAGAAGC+TGG | 0.567276 | 7_4:+23130805 | None:intergenic |
| ACTTGATACAAGAGGATGAA+AGG | 0.567423 | 7_4:-23133673 | Msa1146040:intron |
| CGTGGGAAGGGATCTAACTC+GGG | 0.575940 | 7_4:-23131229 | Msa1146040:CDS |
| TTAGCAGATATAATTTGCAT+GGG | 0.576863 | 7_4:+23130991 | None:intergenic |
| GTCCCTCGAGCTGTTCAGCG+TGG | 0.579249 | 7_4:-23131247 | Msa1146040:CDS |
| TGCAAAATTGCTCTATACCA+GGG | 0.579873 | 7_4:-23131118 | Msa1146040:three_prime_UTR |
| AGGTTACCGATAGCGAAGAA+AGG | 0.581308 | 7_4:+23133888 | None:intergenic |
| ACTAAGAAATAAGCTTACAC+TGG | 0.594361 | 7_4:-23131196 | Msa1146040:exon |
| CATCGTTGGTTCAACCAGCA+AGG | 0.595116 | 7_4:+23133986 | None:intergenic |
| CGACCAAAGCTGATAGAGGA+AGG | 0.601809 | 7_4:+23131295 | None:intergenic |
| AGTGTCTAGATTAAATACTT+CGG | 0.602650 | 7_4:-23131326 | Msa1146040:CDS |
| TATGCTGAGCAAACGTGATG+TGG | 0.604052 | 7_4:+23132512 | None:intergenic |
| CTTGCTGGTTGAACCAACGA+TGG | 0.605484 | 7_4:-23133985 | Msa1146040:exon |
| ATCTAGACACTGCTGAAACA+AGG | 0.610308 | 7_4:+23131338 | None:intergenic |
| GTTTGAGGACTTGATACAAG+AGG | 0.614127 | 7_4:-23133681 | Msa1146040:CDS |
| TTTGGTCGCCGTAACACCAA+AGG | 0.617378 | 7_4:-23131280 | Msa1146040:CDS |
| AATTATATCTGCTAATGATG+TGG | 0.622983 | 7_4:-23130983 | Msa1146040:three_prime_UTR |
| ATGCTGAGCAAACGTGATGT+GGG | 0.625974 | 7_4:+23132513 | None:intergenic |
| TCCCACGCTGAACAGCTCGA+GGG | 0.633991 | 7_4:+23131245 | None:intergenic |
| AGTTGCACGTGGCTATGACA+TGG | 0.642662 | 7_4:-23132451 | Msa1146040:intron |
| AGAAAATAGAATCATGCTGG+AGG | 0.643059 | 7_4:-23131067 | Msa1146040:three_prime_UTR |
| AAAGCTGATAGAGGAAGGAG+TGG | 0.665134 | 7_4:+23131300 | None:intergenic |
| TTTCAGGCAAAAGTTGCACG+TGG | 0.671699 | 7_4:-23132462 | Msa1146040:CDS |
| TGCTGAGCAAACGTGATGTG+GGG | 0.701816 | 7_4:+23132514 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAATTTATACTTATAAAA+TGG | - | chr7_4:23132176-23132195 | Msa1146040:intron | 10.0% |
| !! | TCATTAAATTAAATCATATT+TGG | + | chr7_4:23132462-23132481 | None:intergenic | 10.0% |
| !! | AAATAAAATAGTAAACAAAA+AGG | + | chr7_4:23133001-23133020 | None:intergenic | 10.0% |
| !!! | TATTCTAATACCTATTATTT+TGG | + | chr7_4:23131585-23131604 | None:intergenic | 15.0% |
| !! | AAATAATAGGTATTAGAATA+AGG | - | chr7_4:23131585-23131604 | Msa1146040:intron | 15.0% |
| !!! | TATGATTTAATTTAATGACA+TGG | - | chr7_4:23132464-23132483 | Msa1146040:CDS | 15.0% |
| !!! | GTAAGATTTTAAATTAAAGT+AGG | + | chr7_4:23132561-23132580 | None:intergenic | 15.0% |
| !! | AAATTAAATAGAAGATAGAA+AGG | + | chr7_4:23132668-23132687 | None:intergenic | 15.0% |
| !!! | CAATTTTTTGAATCAAAATC+TGG | + | chr7_4:23130796-23130815 | None:intergenic | 20.0% |
| !! | ATTTATATTCTCGATTAATG+TGG | - | chr7_4:23131283-23131302 | Msa1146040:CDS | 20.0% |
| !!! | ATTCTAGTTCTCAAAATAAA+AGG | + | chr7_4:23131548-23131567 | None:intergenic | 20.0% |
| !!! | ATTTTCAAGAACTATAAGAA+AGG | + | chr7_4:23131908-23131927 | None:intergenic | 20.0% |
| !! | TATATCTGTAATCATTTATG+TGG | - | chr7_4:23131936-23131955 | Msa1146040:intron | 20.0% |
| !!! | TGTTGATAAAATATACACTT+TGG | + | chr7_4:23132055-23132074 | None:intergenic | 20.0% |
| !! | AAACAACCAAATTGTAAAAA+TGG | + | chr7_4:23132602-23132621 | None:intergenic | 20.0% |
| !!! | TGATTTTGAAATCAAAGATT+GGG | + | chr7_4:23132848-23132867 | None:intergenic | 20.0% |
| !!! | ATGATTTTGAAATCAAAGAT+TGG | + | chr7_4:23132849-23132868 | None:intergenic | 20.0% |
| !! | AGAAAGAAATTCATTAACAT+GGG | + | chr7_4:23132973-23132992 | None:intergenic | 20.0% |
| !! | AAGAAAGAAATTCATTAACA+TGG | + | chr7_4:23132974-23132993 | None:intergenic | 20.0% |
| !! | CATTATAGATAATTAACGAT+AGG | - | chr7_4:23133123-23133142 | Msa1146040:intron | 20.0% |
| !! | AAGCTAACATATTACTTATT+TGG | - | chr7_4:23133215-23133234 | Msa1146040:intron | 20.0% |
| !!! | ACATATGATTTTTCTCTATT+AGG | - | chr7_4:23133242-23133261 | Msa1146040:intron | 20.0% |
| !!! | ACTTGCGTTTTAATTTGAAA+AGG | - | chr7_4:23131127-23131146 | Msa1146040:three_prime_UTR | 25.0% |
| ! | ATTTGAATTAACACAAGAGA+AGG | - | chr7_4:23131160-23131179 | Msa1146040:three_prime_UTR | 25.0% |
| ! | TAAGAATATGAAGAAGAAGA+AGG | + | chr7_4:23131246-23131265 | None:intergenic | 25.0% |
| ! | ATAAAAGGACTCTAGTAATA+TGG | + | chr7_4:23131533-23131552 | None:intergenic | 25.0% |
| ! | AGAGTTAAGACCAAAATAAT+AGG | - | chr7_4:23131572-23131591 | Msa1146040:intron | 25.0% |
| ! | GTTTGAGTAAGAACTAATAA+TGG | + | chr7_4:23131770-23131789 | None:intergenic | 25.0% |
| !! | TTTTCCTAGAAGTTAATCTT+TGG | - | chr7_4:23132151-23132170 | Msa1146040:intron | 25.0% |
| ! | AAGCAATATGTTACAAAATG+AGG | + | chr7_4:23132213-23132232 | None:intergenic | 25.0% |
| !!! | GAAAGACCATTTTTACAATT+TGG | - | chr7_4:23132593-23132612 | Msa1146040:CDS | 25.0% |
| ! | AAATAGAAGATAGAAAGGAA+AGG | + | chr7_4:23132663-23132682 | None:intergenic | 25.0% |
| !! | TGGGTTGTTATTAGTTATTA+CGG | + | chr7_4:23132954-23132973 | None:intergenic | 25.0% |
| !!! | TCATATTTGAGTTTGTTAGA+AGG | - | chr7_4:23133033-23133052 | Msa1146040:intron | 25.0% |
| ! | AAATGACAATCTCTATAACA+TGG | - | chr7_4:23133269-23133288 | Msa1146040:intron | 25.0% |
| ! | ATATTAGTATGAATGCTTAG+TGG | - | chr7_4:23133308-23133327 | Msa1146040:intron | 25.0% |
| ! | AATTCAAAAGCTACAAAAGT+AGG | - | chr7_4:23133346-23133365 | Msa1146040:intron | 25.0% |
| ! | AGTGTCTAGATTAAATACTT+CGG | - | chr7_4:23133542-23133561 | Msa1146040:intron | 25.0% |
| !! | GTAAGCTTATTTCTTAGTAA+TGG | + | chr7_4:23133670-23133689 | None:intergenic | 25.0% |
| !! | TTAGCAGATATAATTTGCAT+GGG | + | chr7_4:23133880-23133899 | None:intergenic | 25.0% |
| !! | ATTAGCAGATATAATTTGCA+TGG | + | chr7_4:23133881-23133900 | None:intergenic | 25.0% |
| ! | AATTATATCTGCTAATGATG+TGG | - | chr7_4:23133885-23133904 | Msa1146040:CDS | 25.0% |
| !! | TGTTTAGCTTATATTCACTT+TGG | - | chr7_4:23133940-23133959 | Msa1146040:CDS | 25.0% |
| CAAAACGGAAAATTTGAATC+CGG | + | chr7_4:23130926-23130945 | None:intergenic | 30.0% | |
| TGTTGGAATTTACGAGAAAT+GGG | + | chr7_4:23130953-23130972 | None:intergenic | 30.0% | |
| ! | TTAATTTGAAAAGGTTGCGT+TGG | - | chr7_4:23131136-23131155 | Msa1146040:three_prime_UTR | 30.0% |
| TGGTTAATAGACTTCAGTTA+AGG | - | chr7_4:23131426-23131445 | Msa1146040:CDS | 30.0% | |
| ! | TCTTTGAGAACAGTTAATGA+TGG | - | chr7_4:23131828-23131847 | Msa1146040:intron | 30.0% |
| !! | GTGGTAAAACACATTTTGAT+TGG | - | chr7_4:23131955-23131974 | Msa1146040:intron | 30.0% |
| CACAATCTTCAATAAACATG+AGG | + | chr7_4:23132129-23132148 | None:intergenic | 30.0% | |
| AAAGCCAAAGATTAACTTCT+AGG | + | chr7_4:23132158-23132177 | None:intergenic | 30.0% | |
| AAAGAAAGAATCATGAGCTT+CGG | + | chr7_4:23132389-23132408 | None:intergenic | 30.0% | |
| !! | TCATAGTTGAGTTTGTTAGA+AGG | - | chr7_4:23132700-23132719 | Msa1146040:intron | 30.0% |
| AAAGATAGTCCATTAGTTAG+TGG | - | chr7_4:23132734-23132753 | Msa1146040:intron | 30.0% | |
| !! | TTAGCTTTACCACTAACTAA+TGG | + | chr7_4:23132746-23132765 | None:intergenic | 30.0% |
| TATAGGCCAAACAATTAAGA+AGG | - | chr7_4:23132778-23132797 | Msa1146040:intron | 30.0% | |
| CCAAATCCTTCTTAATTGTT+TGG | + | chr7_4:23132787-23132806 | None:intergenic | 30.0% | |
| CCAAACAATTAAGAAGGATT+TGG | - | chr7_4:23132784-23132803 | Msa1146040:intron | 30.0% | |
| TTGTTAGAAGGAAGATCAAA+TGG | - | chr7_4:23133045-23133064 | Msa1146040:intron | 30.0% | |
| ATTTGACCTATAACTTTCTC+TGG | + | chr7_4:23133103-23133122 | None:intergenic | 30.0% | |
| TTTATCCTGTGTTTCTTTGA+AGG | + | chr7_4:23133435-23133454 | None:intergenic | 30.0% | |
| GAACAAAAAACCTTCTCAAA+AGG | - | chr7_4:23133461-23133480 | Msa1146040:intron | 30.0% | |
| ACTAAGAAATAAGCTTACAC+TGG | - | chr7_4:23133672-23133691 | Msa1146040:intron | 30.0% | |
| ATTGCTTATTGATCGATCTT+CGG | - | chr7_4:23133715-23133734 | Msa1146040:CDS | 30.0% | |
| ! | GTATAGAGCAATTTTGCAAT+GGG | + | chr7_4:23133748-23133767 | None:intergenic | 30.0% |
| ATCAGAAAATAGAATCATGC+TGG | - | chr7_4:23133798-23133817 | Msa1146040:intron | 30.0% | |
| AATAAATGTCAACAAGAAGC+TGG | + | chr7_4:23134066-23134085 | None:intergenic | 30.0% | |
| GGAAGTGGAAAATCAAAATC+CGG | - | chr7_4:23130904-23130923 | Msa1146040:three_prime_UTR | 35.0% | |
| ! | CGGATTCAAATTTTCCGTTT+TGG | - | chr7_4:23130924-23130943 | Msa1146040:three_prime_UTR | 35.0% |
| GTGTTGGAATTTACGAGAAA+TGG | + | chr7_4:23130954-23130973 | None:intergenic | 35.0% | |
| ACTTGATACAAGAGGATGAA+AGG | - | chr7_4:23131195-23131214 | Msa1146040:exon | 35.0% | |
| CAATAAGGCTCGGAATATTA+AGG | + | chr7_4:23131349-23131368 | None:intergenic | 35.0% | |
| CAAGTTAGACGAACACAATA+AGG | + | chr7_4:23131364-23131383 | None:intergenic | 35.0% | |
| ACTATATGATTGTGCTCTAG+TGG | - | chr7_4:23131406-23131425 | Msa1146040:CDS | 35.0% | |
| AAACTTTATATACCTCCCAG+CGG | - | chr7_4:23131503-23131522 | Msa1146040:CDS | 35.0% | |
| TAGTAATATGGAATTCCGCT+GGG | + | chr7_4:23131521-23131540 | None:intergenic | 35.0% | |
| TAGAATAAGGCGTGCTAATT+TGG | - | chr7_4:23131598-23131617 | Msa1146040:intron | 35.0% | |
| AGAATAAGGCGTGCTAATTT+GGG | - | chr7_4:23131599-23131618 | Msa1146040:intron | 35.0% | |
| GTTTGAATTTGCGGTAAGTA+TGG | + | chr7_4:23132102-23132121 | None:intergenic | 35.0% | |
| ACTTACCGCAAATTCAAACA+TGG | - | chr7_4:23132103-23132122 | Msa1146040:intron | 35.0% | |
| TGTAACATATTGCTTTGTGC+AGG | - | chr7_4:23132218-23132237 | Msa1146040:intron | 35.0% | |
| GTAACATATTGCTTTGTGCA+GGG | - | chr7_4:23132219-23132238 | Msa1146040:intron | 35.0% | |
| ATGCAGTATGTCTTGCATTA+TGG | + | chr7_4:23132309-23132328 | None:intergenic | 35.0% | |
| AGCTCATGATTCTTTCTTTC+AGG | - | chr7_4:23132390-23132409 | Msa1146040:intron | 35.0% | |
| GCTAAACCAGAGAAAACTAT+AGG | - | chr7_4:23132761-23132780 | Msa1146040:intron | 35.0% | |
| ! | TCGTTTTGTGGAAAGGTTAT+TGG | + | chr7_4:23132873-23132892 | None:intergenic | 35.0% |
| TATTACACAGAGATAACACG+AGG | + | chr7_4:23132924-23132943 | None:intergenic | 35.0% | |
| GAAGATAGTCCAATAGTTAG+AGG | - | chr7_4:23133067-23133086 | Msa1146040:intron | 35.0% | |
| AGTCCAATAGTTAGAGGTAA+AGG | - | chr7_4:23133073-23133092 | Msa1146040:intron | 35.0% | |
| GTCCAATAGTTAGAGGTAAA+GGG | - | chr7_4:23133074-23133093 | Msa1146040:intron | 35.0% | |
| TTCCCTTTACCTCTAACTAT+TGG | + | chr7_4:23133079-23133098 | None:intergenic | 35.0% | |
| ! | CAACAAAGTCTTTTCTCATC+AGG | + | chr7_4:23133187-23133206 | None:intergenic | 35.0% |
| TAGTATGAATGCTTAGTGGA+AGG | - | chr7_4:23133312-23133331 | Msa1146040:intron | 35.0% | |
| TTGAAAAACTCGAATGACGT+CGG | + | chr7_4:23133402-23133421 | None:intergenic | 35.0% | |
| !!! | GTCATTCGAGTTTTTCAAGA+AGG | - | chr7_4:23133404-23133423 | Msa1146040:intron | 35.0% |
| CAAAAAACCTTCTCAAAAGG+AGG | - | chr7_4:23133464-23133483 | Msa1146040:intron | 35.0% | |
| ! | GGTATAGAGCAATTTTGCAA+TGG | + | chr7_4:23133749-23133768 | None:intergenic | 35.0% |
| TTGCAAAATTGCTCTATACC+AGG | - | chr7_4:23133749-23133768 | Msa1146040:intron | 35.0% | |
| TGCAAAATTGCTCTATACCA+GGG | - | chr7_4:23133750-23133769 | Msa1146040:intron | 35.0% | |
| !!! | TGATCATCTTTTTTCAACCC+TGG | + | chr7_4:23133770-23133789 | None:intergenic | 35.0% |
| AGAAAATAGAATCATGCTGG+AGG | - | chr7_4:23133801-23133820 | Msa1146040:intron | 35.0% | |
| TATGTAAGTGTCCCTAACAT+AGG | - | chr7_4:23133847-23133866 | Msa1146040:intron | 35.0% | |
| TGAATACCAAGCTTTGCAAA+TGG | - | chr7_4:23134038-23134057 | Msa1146040:five_prime_UTR | 35.0% | |
| ! | TCCATTCTCATTTTCCTTGC+TGG | - | chr7_4:23130868-23130887 | Msa1146040:three_prime_UTR | 40.0% |
| ACCAGCAAGGAAAATGAGAA+TGG | + | chr7_4:23130872-23130891 | None:intergenic | 40.0% | |
| ! | TGATTTTCCACTTCCATCGT+TGG | + | chr7_4:23130899-23130918 | None:intergenic | 40.0% |
| ! | CGAGAAATGGGTTTCCAAAA+CGG | + | chr7_4:23130941-23130960 | None:intergenic | 40.0% |
| GATTCACCTTTCTTCGCTAT+CGG | - | chr7_4:23130974-23130993 | Msa1146040:three_prime_UTR | 40.0% | |
| ACGAGAACTTCTTGTCAAAC+AGG | - | chr7_4:23131006-23131025 | Msa1146040:three_prime_UTR | 40.0% | |
| ACAAGAGAAGGAACAGTTTG+AGG | - | chr7_4:23131172-23131191 | Msa1146040:three_prime_UTR | 40.0% | |
| GTTTGAGGACTTGATACAAG+AGG | - | chr7_4:23131187-23131206 | Msa1146040:three_prime_UTR | 40.0% | |
| TAGACGAACACAATAAGGCT+CGG | + | chr7_4:23131359-23131378 | None:intergenic | 40.0% | |
| AACCTGGATGGAACAACTAT+TGG | - | chr7_4:23131478-23131497 | Msa1146040:CDS | 40.0% | |
| AACCAATAGTTGTTCCATCC+AGG | + | chr7_4:23131483-23131502 | None:intergenic | 40.0% | |
| CTAGTAATATGGAATTCCGC+TGG | + | chr7_4:23131522-23131541 | None:intergenic | 40.0% | |
| TGAGGCCATGTTTGAATTTG+CGG | + | chr7_4:23132111-23132130 | None:intergenic | 40.0% | |
| ! | GTTTGGCCTATAGTTTTCTC+TGG | + | chr7_4:23132770-23132789 | None:intergenic | 40.0% |
| TGTTGGAATGTCATGCGTTT+GGG | + | chr7_4:23132900-23132919 | None:intergenic | 40.0% | |
| TTGTTGGAATGTCATGCGTT+TGG | + | chr7_4:23132901-23132920 | None:intergenic | 40.0% | |
| GGGAAACCAGAGAAAGTTAT+AGG | - | chr7_4:23133094-23133113 | Msa1146040:intron | 40.0% | |
| TGAAAAACTCGAATGACGTC+GGG | + | chr7_4:23133401-23133420 | None:intergenic | 40.0% | |
| !! | GAAGTATCCTCCTTTTGAGA+AGG | + | chr7_4:23133474-23133493 | None:intergenic | 40.0% |
| TCTCAAAAGGAGGATACTTC+AGG | - | chr7_4:23133474-23133493 | Msa1146040:intron | 40.0% | |
| ! | TACTTCAGGAATGATGGAAG+TGG | - | chr7_4:23133488-23133507 | Msa1146040:intron | 40.0% |
| GGAAGTGGAAAATGAAGCTA+TGG | - | chr7_4:23133503-23133522 | Msa1146040:intron | 40.0% | |
| ATCTAGACACTGCTGAAACA+AGG | + | chr7_4:23133533-23133552 | None:intergenic | 40.0% | |
| !! | ATGACATGCCTTTGGTGTTA+CGG | + | chr7_4:23133599-23133618 | None:intergenic | 40.0% |
| ! | AGAGCAATTTTGCAATGGGA+CGG | + | chr7_4:23133744-23133763 | None:intergenic | 40.0% |
| TGGGCACAAAACCTATGTTA+GGG | + | chr7_4:23133861-23133880 | None:intergenic | 40.0% | |
| ATGGGCACAAAACCTATGTT+AGG | + | chr7_4:23133862-23133881 | None:intergenic | 40.0% | |
| CGAAGAAAGGTGAATCGTGT+TGG | + | chr7_4:23130970-23130989 | None:intergenic | 45.0% | |
| AGGTTACCGATAGCGAAGAA+AGG | + | chr7_4:23130983-23131002 | None:intergenic | 45.0% | |
| TGACAAGAAGTTCTCGTTCG+AGG | + | chr7_4:23131003-23131022 | None:intergenic | 45.0% | |
| GGCTTATTCGACCTCAATCT+CGG | - | chr7_4:23131304-23131323 | Msa1146040:CDS | 45.0% | |
| CAGTTAAGGACGAATCGATC+AGG | - | chr7_4:23131440-23131459 | Msa1146040:CDS | 45.0% | |
| GACGAATCGATCAGGAGAAT+CGG | - | chr7_4:23131448-23131467 | Msa1146040:CDS | 45.0% | |
| GAGAATCGGAATTCGAAACC+TGG | - | chr7_4:23131462-23131481 | Msa1146040:CDS | 45.0% | |
| ATCGGAATTCGAAACCTGGA+TGG | - | chr7_4:23131466-23131485 | Msa1146040:CDS | 45.0% | |
| TAATATGGAATTCCGCTGGG+AGG | + | chr7_4:23131518-23131537 | None:intergenic | 45.0% | |
| ATAAGGCGTGCTAATTTGGG+TGG | - | chr7_4:23131602-23131621 | Msa1146040:intron | 45.0% | |
| TAAGGCGTGCTAATTTGGGT+GGG | - | chr7_4:23131603-23131622 | Msa1146040:intron | 45.0% | |
| ! | GAAACGAATCTGAGACCTTG+AGG | + | chr7_4:23131670-23131689 | None:intergenic | 45.0% |
| AAGTCTTCTGTCCCATTGCT+GGG | - | chr7_4:23132242-23132261 | Msa1146040:intron | 45.0% | |
| ! | AGCACGTTTGGCTTCAATTG+AGG | - | chr7_4:23132270-23132289 | Msa1146040:intron | 45.0% |
| !! | GACTCTAGAACACACAGAAC+AGG | + | chr7_4:23132332-23132351 | None:intergenic | 45.0% |
| ATGCTGAGCAAACGTGATGT+GGG | + | chr7_4:23132358-23132377 | None:intergenic | 45.0% | |
| TATGCTGAGCAAACGTGATG+TGG | + | chr7_4:23132359-23132378 | None:intergenic | 45.0% | |
| TTTCAGGCAAAAGTTGCACG+TGG | - | chr7_4:23132406-23132425 | Msa1146040:intron | 45.0% | |
| CAGAGATAACACGAGGTTGT+TGG | + | chr7_4:23132917-23132936 | None:intergenic | 45.0% | |
| ! | AAGTCTTTTCTCATCAGGCG+AGG | + | chr7_4:23133182-23133201 | None:intergenic | 45.0% |
| GAATGCTTAGTGGAAGGTTG+CGG | - | chr7_4:23133318-23133337 | Msa1146040:intron | 45.0% | |
| CTCTGCCTTCAAAGAAACAC+AGG | - | chr7_4:23133427-23133446 | Msa1146040:intron | 45.0% | |
| GGAGGATACTTCAGGAATGA+TGG | - | chr7_4:23133482-23133501 | Msa1146040:intron | 45.0% | |
| AAAGCTGATAGAGGAAGGAG+TGG | + | chr7_4:23133571-23133590 | None:intergenic | 45.0% | |
| ACTCCTTCCTCTATCAGCTT+TGG | - | chr7_4:23133570-23133589 | Msa1146040:intron | 45.0% | |
| AGGGACAAATGACATGCCTT+TGG | + | chr7_4:23133607-23133626 | None:intergenic | 45.0% | |
| !! | TCAAAATAATTATAATAATA+AGG | - | chr7_4:23131727-23131746 | Msa1146040:intron | 5.0% |
| !! | CATCGTTGGTTCAACCAGCA+AGG | + | chr7_4:23130885-23130904 | None:intergenic | 50.0% |
| ! | CTTGCTGGTTGAACCAACGA+TGG | - | chr7_4:23130883-23130902 | Msa1146040:three_prime_UTR | 50.0% |
| GGTTGAACCAACGATGGAAG+TGG | - | chr7_4:23130889-23130908 | Msa1146040:three_prime_UTR | 50.0% | |
| TGTCTCTGCAACCGAGATTG+AGG | + | chr7_4:23131318-23131337 | None:intergenic | 50.0% | |
| CGTGCTAATTTGGGTGGGTA+TGG | - | chr7_4:23131608-23131627 | Msa1146040:intron | 50.0% | |
| GCTAATTTGGGTGGGTATGG+TGG | - | chr7_4:23131611-23131630 | Msa1146040:intron | 50.0% | |
| ! | ATCTGAGACCTTGAGGAGGA+GGG | + | chr7_4:23131663-23131682 | None:intergenic | 50.0% |
| ! | AATCTGAGACCTTGAGGAGG+AGG | + | chr7_4:23131664-23131683 | None:intergenic | 50.0% |
| ! | ACGAATCTGAGACCTTGAGG+AGG | + | chr7_4:23131667-23131686 | None:intergenic | 50.0% |
| TTTCGCCCTTGTGCCAGTTT+GGG | - | chr7_4:23131686-23131705 | Msa1146040:intron | 50.0% | |
| GAAGTCTTCTGTCCCATTGC+TGG | - | chr7_4:23132241-23132260 | Msa1146040:intron | 50.0% | |
| TGCTGAGCAAACGTGATGTG+GGG | + | chr7_4:23132357-23132376 | None:intergenic | 50.0% | |
| AGTTGCACGTGGCTATGACA+TGG | - | chr7_4:23132417-23132436 | Msa1146040:intron | 50.0% | |
| ! | GGGCGTTTCGTTTTGTGGAA+AGG | + | chr7_4:23132880-23132899 | None:intergenic | 50.0% |
| ! | CGTTTGGGCGTTTCGTTTTG+TGG | + | chr7_4:23132885-23132904 | None:intergenic | 50.0% |
| CGACCAAAGCTGATAGAGGA+AGG | + | chr7_4:23133576-23133595 | None:intergenic | 50.0% | |
| TTTGGTCGCCGTAACACCAA+AGG | - | chr7_4:23133588-23133607 | Msa1146040:intron | 50.0% | |
| CTGGCACCATTTGCAAAGCT+TGG | + | chr7_4:23134047-23134066 | None:intergenic | 50.0% | |
| ! | TTGGGTGGGTATGGTGGTGT+TGG | - | chr7_4:23131617-23131636 | Msa1146040:intron | 55.0% |
| ! | AGGAGGAGGGGCATATTCCA+AGG | + | chr7_4:23131650-23131669 | None:intergenic | 55.0% |
| GAATATGCCCCTCCTCCTCA+AGG | - | chr7_4:23131652-23131671 | Msa1146040:intron | 55.0% | |
| ! | TCTGAGACCTTGAGGAGGAG+GGG | + | chr7_4:23131662-23131681 | None:intergenic | 55.0% |
| GTTTCGCCCTTGTGCCAGTT+TGG | - | chr7_4:23131685-23131704 | Msa1146040:intron | 55.0% | |
| CTAAGCTAGCCCTCCCAAAC+TGG | + | chr7_4:23131702-23131721 | None:intergenic | 55.0% | |
| TTCTGTCCCATTGCTGGGTG+TGG | - | chr7_4:23132247-23132266 | Msa1146040:intron | 55.0% | |
| ACGGCGACCAAAGCTGATAG+AGG | + | chr7_4:23133580-23133599 | None:intergenic | 55.0% | |
| GCGTGGGAAGGGATCTAACT+CGG | - | chr7_4:23133638-23133657 | Msa1146040:intron | 55.0% | |
| CGTGGGAAGGGATCTAACTC+GGG | - | chr7_4:23133639-23133658 | Msa1146040:intron | 55.0% | |
| !! | GTGGTGTTGGCTCGAGACCT+TGG | - | chr7_4:23131630-23131649 | Msa1146040:intron | 60.0% |
| GCCCTTGTGCCAGTTTGGGA+GGG | - | chr7_4:23131690-23131709 | Msa1146040:intron | 60.0% | |
| GCCCTCCCAAACTGGCACAA+GGG | + | chr7_4:23131694-23131713 | None:intergenic | 60.0% | |
| AGCCCTCCCAAACTGGCACA+AGG | + | chr7_4:23131695-23131714 | None:intergenic | 60.0% | |
| CGTGCTCCACACCCAGCAAT+GGG | + | chr7_4:23132256-23132275 | None:intergenic | 60.0% | |
| ACGTGCTCCACACCCAGCAA+TGG | + | chr7_4:23132257-23132276 | None:intergenic | 60.0% | |
| TGCTGGGTGTGGAGCACGTT+TGG | - | chr7_4:23132258-23132277 | Msa1146040:intron | 60.0% | |
| TCCCTCGAGCTGTTCAGCGT+GGG | - | chr7_4:23133622-23133641 | Msa1146040:intron | 60.0% | |
| TCCCACGCTGAACAGCTCGA+GGG | + | chr7_4:23133626-23133645 | None:intergenic | 60.0% | |
| TTCCCACGCTGAACAGCTCG+AGG | + | chr7_4:23133627-23133646 | None:intergenic | 60.0% | |
| TCGAGCTGTTCAGCGTGGGA+AGG | - | chr7_4:23133626-23133645 | Msa1146040:intron | 60.0% | |
| CGAGCTGTTCAGCGTGGGAA+GGG | - | chr7_4:23133627-23133646 | Msa1146040:intron | 60.0% | |
| CGCCCTTGTGCCAGTTTGGG+AGG | - | chr7_4:23131689-23131708 | Msa1146040:intron | 65.0% | |
| GTCCCTCGAGCTGTTCAGCG+TGG | - | chr7_4:23133621-23133640 | Msa1146040:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 23130789 | 23134101 | 23130789 | ID=Msa1146040;Name=Msa1146040 |
| chr7_4 | mRNA | 23130789 | 23134101 | 23130789 | ID=Msa1146040-mRNA-1;Parent=Msa1146040;Name=Msa1146040-mRNA-1;_AED=0.32;_eAED=0.32;_QI=113|1|1|1|1|1|4|418|253 |
| chr7_4 | exon | 23130789 | 23131575 | 23130789 | ID=Msa1146040-mRNA-1:exon:5823;Parent=Msa1146040-mRNA-1 |
| chr7_4 | exon | 23132452 | 23132650 | 23132452 | ID=Msa1146040-mRNA-1:exon:5822;Parent=Msa1146040-mRNA-1 |
| chr7_4 | exon | 23133674 | 23133741 | 23133674 | ID=Msa1146040-mRNA-1:exon:5821;Parent=Msa1146040-mRNA-1 |
| chr7_4 | exon | 23133863 | 23134101 | 23133863 | ID=Msa1146040-mRNA-1:exon:5820;Parent=Msa1146040-mRNA-1 |
| chr7_4 | five_prime_UTR | 23133989 | 23134101 | 23133989 | ID=Msa1146040-mRNA-1:five_prime_utr;Parent=Msa1146040-mRNA-1 |
| chr7_4 | CDS | 23133863 | 23133988 | 23133863 | ID=Msa1146040-mRNA-1:cds;Parent=Msa1146040-mRNA-1 |
| chr7_4 | CDS | 23133674 | 23133741 | 23133674 | ID=Msa1146040-mRNA-1:cds;Parent=Msa1146040-mRNA-1 |
| chr7_4 | CDS | 23132452 | 23132650 | 23132452 | ID=Msa1146040-mRNA-1:cds;Parent=Msa1146040-mRNA-1 |
| chr7_4 | CDS | 23131207 | 23131575 | 23131207 | ID=Msa1146040-mRNA-1:cds;Parent=Msa1146040-mRNA-1 |
| chr7_4 | three_prime_UTR | 23130789 | 23131206 | 23130789 | ID=Msa1146040-mRNA-1:three_prime_utr;Parent=Msa1146040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
