Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146400 | AES78883.1 | 91.118 | 304 | 26 | 1 | 1 | 304 | 1 | 303 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146400 | sp|Q9ZSH7|Y4158_ARATH | 43.269 | 104 | 59 | 0 | 13 | 116 | 30 | 133 | 1.38e-21 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146400 | G7KVV6 | 91.118 | 304 | 26 | 1 | 1 | 304 | 1 | 303 | 0.0 | 549 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1146400 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146400 | MtrunA17_Chr7g0233531 | 91.459 | 281 | 23 | 1 | 28 | 308 | 1 | 280 | 0.0 | 506 |
| Msa1146400 | MtrunA17_Chr7g0233561 | 71.692 | 325 | 74 | 4 | 1 | 308 | 6 | 329 | 3.46e-163 | 457 |
| Msa1146400 | MtrunA17_Chr3g0131891 | 69.524 | 315 | 88 | 3 | 1 | 308 | 7 | 320 | 8.34e-159 | 446 |
| Msa1146400 | MtrunA17_Chr7g0233541 | 69.231 | 299 | 72 | 6 | 28 | 308 | 1 | 297 | 1.04e-142 | 404 |
| Msa1146400 | MtrunA17_Chr7g0233521 | 65.993 | 297 | 68 | 8 | 28 | 308 | 1 | 280 | 3.54e-130 | 371 |
| Msa1146400 | MtrunA17_Chr7g0233571 | 57.674 | 215 | 70 | 6 | 7 | 202 | 4 | 216 | 5.89e-76 | 231 |
| Msa1146400 | MtrunA17_Chr8g0390841 | 35.016 | 317 | 148 | 9 | 11 | 291 | 37 | 331 | 6.87e-47 | 165 |
| Msa1146400 | MtrunA17_Chr8g0390841 | 25.784 | 287 | 195 | 10 | 13 | 291 | 242 | 518 | 1.01e-13 | 71.6 |
| Msa1146400 | MtrunA17_Chr1g0208771 | 33.333 | 303 | 151 | 9 | 29 | 298 | 13 | 297 | 1.88e-44 | 157 |
| Msa1146400 | MtrunA17_Chr1g0163071 | 33.007 | 306 | 158 | 8 | 28 | 298 | 1 | 294 | 5.24e-43 | 150 |
| Msa1146400 | MtrunA17_Chr3g0103181 | 33.569 | 283 | 174 | 7 | 10 | 290 | 9 | 279 | 2.10e-39 | 139 |
| Msa1146400 | MtrunA17_Chr1g0163261 | 31.561 | 301 | 180 | 8 | 10 | 299 | 6 | 291 | 6.22e-33 | 123 |
| Msa1146400 | MtrunA17_Chr3g0103191 | 35.567 | 194 | 111 | 4 | 10 | 195 | 9 | 196 | 7.01e-33 | 121 |
| Msa1146400 | MtrunA17_Chr1g0171611 | 33.216 | 283 | 163 | 10 | 10 | 289 | 6 | 265 | 1.05e-31 | 119 |
| Msa1146400 | MtrunA17_Chr3g0103171 | 30.112 | 269 | 172 | 9 | 29 | 290 | 6 | 265 | 7.42e-31 | 117 |
| Msa1146400 | MtrunA17_Chr1g0163231 | 30.175 | 285 | 181 | 8 | 10 | 289 | 6 | 277 | 7.62e-31 | 117 |
| Msa1146400 | MtrunA17_Chr1g0163181 | 30.743 | 296 | 179 | 9 | 22 | 299 | 14 | 301 | 1.68e-29 | 116 |
| Msa1146400 | MtrunA17_Chr1g0163221 | 31.271 | 291 | 180 | 9 | 11 | 290 | 9 | 290 | 2.07e-29 | 115 |
| Msa1146400 | MtrunA17_Chr5g0419201 | 36.000 | 175 | 97 | 3 | 13 | 175 | 16 | 187 | 6.55e-29 | 109 |
| Msa1146400 | MtrunA17_Chr3g0103151 | 49.038 | 104 | 51 | 1 | 10 | 113 | 9 | 110 | 2.95e-28 | 107 |
| Msa1146400 | MtrunA17_Chr4g0067431 | 29.180 | 305 | 185 | 10 | 11 | 290 | 13 | 311 | 8.14e-27 | 107 |
| Msa1146400 | MtrunA17_Chr1g0163251 | 29.252 | 294 | 187 | 9 | 13 | 299 | 9 | 288 | 9.77e-26 | 105 |
| Msa1146400 | MtrunA17_Chr1g0163201 | 31.408 | 277 | 166 | 9 | 29 | 291 | 19 | 285 | 3.16e-25 | 104 |
| Msa1146400 | MtrunA17_Chr3g0077451 | 27.239 | 268 | 155 | 5 | 27 | 294 | 10 | 237 | 5.01e-25 | 100 |
| Msa1146400 | MtrunA17_Chr3g0077411 | 28.912 | 294 | 166 | 11 | 11 | 294 | 260 | 520 | 6.78e-23 | 98.6 |
| Msa1146400 | MtrunA17_Chr3g0077411 | 32.673 | 101 | 68 | 0 | 12 | 112 | 24 | 124 | 4.02e-16 | 78.6 |
| Msa1146400 | MtrunA17_Chr1g0154131 | 28.767 | 292 | 178 | 9 | 11 | 283 | 182 | 462 | 2.57e-22 | 96.7 |
| Msa1146400 | MtrunA17_Chr1g0154131 | 27.737 | 137 | 83 | 2 | 11 | 132 | 24 | 159 | 1.34e-11 | 65.1 |
| Msa1146400 | MtrunA17_Chr6g0467351 | 36.364 | 165 | 92 | 3 | 11 | 174 | 13 | 165 | 2.84e-22 | 93.2 |
| Msa1146400 | MtrunA17_Chr5g0429931 | 27.206 | 272 | 155 | 7 | 29 | 294 | 11 | 245 | 5.67e-22 | 92.8 |
| Msa1146400 | MtrunA17_Chr1g0154161 | 26.183 | 317 | 179 | 11 | 11 | 298 | 28 | 318 | 3.26e-21 | 92.0 |
| Msa1146400 | MtrunA17_Chr1g0162441 | 41.414 | 99 | 58 | 0 | 13 | 111 | 7 | 105 | 5.62e-21 | 92.4 |
| Msa1146400 | MtrunA17_Chr1g0162441 | 29.710 | 138 | 90 | 3 | 160 | 297 | 268 | 398 | 2.65e-13 | 70.1 |
| Msa1146400 | MtrunA17_Chr1g0163131 | 27.564 | 312 | 175 | 8 | 7 | 287 | 12 | 303 | 6.28e-21 | 90.9 |
| Msa1146400 | MtrunA17_Chr3g0077461 | 29.433 | 282 | 144 | 9 | 4 | 282 | 230 | 459 | 1.39e-20 | 91.7 |
| Msa1146400 | MtrunA17_Chr3g0077461 | 29.907 | 107 | 74 | 1 | 29 | 134 | 23 | 129 | 7.41e-14 | 71.6 |
| Msa1146400 | MtrunA17_Chr3g0103201 | 28.879 | 232 | 144 | 8 | 68 | 290 | 1 | 220 | 3.54e-20 | 87.0 |
| Msa1146400 | MtrunA17_Chr1g0154171 | 25.228 | 329 | 190 | 9 | 11 | 290 | 21 | 342 | 4.71e-20 | 89.4 |
| Msa1146400 | MtrunA17_Chr1g0154191 | 25.220 | 341 | 185 | 9 | 11 | 289 | 20 | 352 | 1.93e-19 | 87.8 |
| Msa1146400 | MtrunA17_Chr4g0033961 | 38.095 | 105 | 63 | 1 | 13 | 115 | 6 | 110 | 2.23e-19 | 87.8 |
| Msa1146400 | MtrunA17_Chr4g0033961 | 32.117 | 137 | 86 | 3 | 160 | 296 | 264 | 393 | 2.65e-14 | 72.8 |
| Msa1146400 | MtrunA17_Chr1g0163101 | 36.923 | 130 | 77 | 3 | 8 | 135 | 12 | 138 | 8.76e-19 | 82.4 |
| Msa1146400 | MtrunA17_Chr3g0077431 | 27.731 | 238 | 132 | 5 | 57 | 294 | 1 | 198 | 4.12e-18 | 80.9 |
| Msa1146400 | MtrunA17_Chr1g0154211 | 24.217 | 351 | 186 | 9 | 11 | 283 | 21 | 369 | 4.46e-18 | 84.0 |
| Msa1146400 | MtrunA17_Chr1g0154151 | 23.750 | 320 | 176 | 8 | 16 | 290 | 14 | 310 | 1.19e-16 | 79.3 |
| Msa1146400 | MtrunA17_Chr1g0162411 | 38.384 | 99 | 59 | 1 | 13 | 111 | 7 | 103 | 2.76e-16 | 79.0 |
| Msa1146400 | MtrunA17_Chr1g0163141 | 40.594 | 101 | 52 | 3 | 27 | 127 | 9 | 101 | 3.30e-16 | 75.5 |
| Msa1146400 | MtrunA17_Chr3g0077421 | 27.197 | 239 | 133 | 6 | 57 | 294 | 1 | 199 | 3.41e-16 | 75.9 |
| Msa1146400 | MtrunA17_Chr3g0077441 | 27.197 | 239 | 133 | 6 | 57 | 294 | 1 | 199 | 3.41e-16 | 75.9 |
| Msa1146400 | MtrunA17_Chr1g0163121 | 31.333 | 150 | 83 | 4 | 27 | 176 | 9 | 138 | 4.27e-16 | 73.9 |
| Msa1146400 | MtrunA17_Chr4g0009491 | 26.887 | 212 | 125 | 5 | 12 | 215 | 224 | 413 | 1.29e-15 | 77.0 |
| Msa1146400 | MtrunA17_Chr4g0009491 | 30.579 | 121 | 83 | 1 | 27 | 146 | 11 | 131 | 2.57e-14 | 73.2 |
| Msa1146400 | MtrunA17_Chr3g0077381 | 32.203 | 118 | 71 | 2 | 27 | 144 | 34 | 142 | 2.35e-15 | 76.3 |
| Msa1146400 | MtrunA17_Chr3g0077381 | 26.829 | 205 | 127 | 4 | 12 | 215 | 246 | 428 | 9.72e-15 | 74.3 |
| Msa1146400 | MtrunA17_Chr1g0163061 | 40.952 | 105 | 61 | 1 | 11 | 114 | 13 | 117 | 2.44e-15 | 74.7 |
| Msa1146400 | MtrunA17_Chr1g0163241 | 37.000 | 100 | 61 | 1 | 29 | 128 | 23 | 120 | 3.05e-15 | 72.4 |
| Msa1146400 | MtrunA17_Chr1g0163191 | 37.037 | 108 | 60 | 2 | 22 | 129 | 14 | 113 | 7.38e-15 | 70.9 |
| Msa1146400 | MtrunA17_Chr3g0077361 | 24.164 | 269 | 148 | 8 | 12 | 278 | 39 | 253 | 1.96e-14 | 73.6 |
| Msa1146400 | MtrunA17_Chr1g0154251 | 36.559 | 93 | 58 | 1 | 11 | 103 | 25 | 116 | 4.38e-14 | 72.4 |
| Msa1146400 | MtrunA17_Chr1g0154101 | 37.634 | 93 | 56 | 2 | 11 | 103 | 182 | 272 | 1.22e-13 | 71.6 |
| Msa1146400 | MtrunA17_Chr1g0154101 | 35.870 | 92 | 59 | 0 | 11 | 102 | 23 | 114 | 1.75e-13 | 70.9 |
| Msa1146400 | MtrunA17_Chr1g0154241 | 35.052 | 97 | 62 | 1 | 11 | 107 | 20 | 115 | 9.58e-13 | 67.4 |
| Msa1146400 | MtrunA17_Chr6g0476181 | 38.710 | 93 | 54 | 2 | 28 | 120 | 1 | 90 | 1.85e-12 | 64.3 |
| Msa1146400 | MtrunA17_Chr1g0154071 | 35.556 | 90 | 57 | 1 | 14 | 103 | 157 | 245 | 3.97e-12 | 66.6 |
| Msa1146400 | MtrunA17_Chr1g0154071 | 31.959 | 97 | 65 | 1 | 11 | 107 | 26 | 121 | 1.37e-11 | 65.1 |
| Msa1146400 | MtrunA17_Chr1g0163081 | 36.842 | 95 | 57 | 2 | 28 | 122 | 5 | 96 | 3.99e-12 | 63.2 |
| Msa1146400 | MtrunA17_Chr1g0154111 | 35.870 | 92 | 59 | 0 | 11 | 102 | 24 | 115 | 1.28e-11 | 65.1 |
| Msa1146400 | MtrunA17_Chr1g0162161 | 35.955 | 89 | 54 | 2 | 28 | 116 | 3 | 88 | 1.30e-11 | 62.0 |
| Msa1146400 | MtrunA17_Chr1g0154041 | 32.673 | 101 | 67 | 1 | 8 | 108 | 11 | 110 | 2.12e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146400 | AT3G18990.2 | 26.608 | 342 | 183 | 7 | 13 | 294 | 6 | 339 | 2.75e-30 | 118 |
| Msa1146400 | AT4G01580.1 | 43.269 | 104 | 59 | 0 | 13 | 116 | 30 | 133 | 1.40e-22 | 93.2 |
| Msa1146400 | AT1G49475.1 | 40.517 | 116 | 68 | 1 | 13 | 128 | 34 | 148 | 3.45e-22 | 92.0 |
| Msa1146400 | AT4G33280.1 | 27.586 | 319 | 185 | 14 | 11 | 298 | 23 | 326 | 5.36e-22 | 94.7 |
| Msa1146400 | AT3G18960.2 | 34.211 | 152 | 84 | 2 | 13 | 148 | 30 | 181 | 2.31e-21 | 90.1 |
| Msa1146400 | AT3G18990.1 | 41.414 | 99 | 58 | 0 | 13 | 111 | 6 | 104 | 4.02e-21 | 92.4 |
| Msa1146400 | AT3G18960.1 | 34.211 | 152 | 84 | 2 | 13 | 148 | 30 | 181 | 4.34e-21 | 89.7 |
| Msa1146400 | AT3G18960.3 | 35.294 | 136 | 72 | 2 | 29 | 148 | 9 | 144 | 7.32e-18 | 80.1 |
| Msa1146400 | AT3G53310.1 | 33.333 | 102 | 63 | 2 | 3 | 104 | 5 | 101 | 6.44e-12 | 65.5 |
Find 40 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGCTAACTCCTTTGAATT+TGG | 0.175508 | 7_4:+23940542 | Msa1146400:CDS |
| TGGAAAATGGAAATTAAATT+TGG | 0.234349 | 7_4:+23940274 | Msa1146400:CDS |
| AGAAAATTTGTGGAGAAATA+TGG | 0.268462 | 7_4:+23940209 | Msa1146400:CDS |
| GTCTTTAGACATGTTTCTTT+TGG | 0.282527 | 7_4:-23940242 | None:intergenic |
| AGACTCCAAATGGTGGAAAA+TGG | 0.283126 | 7_4:+23940261 | Msa1146400:CDS |
| CAAGGAAATGAATCTCTAAA+TGG | 0.329233 | 7_4:+23940491 | Msa1146400:CDS |
| AGTAGTAGTTGTGTTAAAGT+TGG | 0.371498 | 7_4:+23940566 | Msa1146400:CDS |
| AGGTGTTAAATGAAGGAGTT+TGG | 0.387476 | 7_4:+23941258 | Msa1146400:CDS |
| TGGTAATAGACACTTTGATT+TGG | 0.391800 | 7_4:+23941208 | Msa1146400:CDS |
| CAGAATATACCACGTATGTT+TGG | 0.412403 | 7_4:+23941188 | Msa1146400:intron |
| GATGATGCCAAGAAAATTTG+TGG | 0.418421 | 7_4:+23940199 | Msa1146400:intron |
| GTAGTAGTTGTGTTAAAGTT+GGG | 0.429796 | 7_4:+23940567 | Msa1146400:CDS |
| AGATTCATTTCCTTGATCAA+TGG | 0.441958 | 7_4:-23940483 | None:intergenic |
| ATCAAATTGTAGTCCTGTAC+TGG | 0.447350 | 7_4:-23941306 | None:intergenic |
| TGGCAAGGTATGGTTTGAAA+AGG | 0.450397 | 7_4:+23940307 | Msa1146400:CDS |
| ATGAAGGAGTTTGGCCTACA+AGG | 0.459083 | 7_4:+23941267 | Msa1146400:CDS |
| AAAGGCTTACAAGCTTTCCT+TGG | 0.474678 | 7_4:-23939415 | None:intergenic |
| TTTGATTTGGATAAGAAAAG+AGG | 0.493087 | 7_4:+23941221 | Msa1146400:CDS |
| CATGGCTAGTGAAATTTATG+AGG | 0.497255 | 7_4:+23939346 | None:intergenic |
| ACATGTCTAAAGACTCCAAA+TGG | 0.505252 | 7_4:+23940251 | Msa1146400:CDS |
| ATGACAACAACAACAAATGA+TGG | 0.517431 | 7_4:-23940826 | None:intergenic |
| GAGGACAATAACTTGAAAGT+TGG | 0.523457 | 7_4:+23941356 | Msa1146400:CDS |
| TCTAAAGATATGAACAATGA+AGG | 0.524509 | 7_4:-23941420 | None:intergenic |
| TTACAAGCTTTCCTTGGTGA+AGG | 0.528265 | 7_4:-23939409 | None:intergenic |
| AGGTATGGTTTGAAAAGGGT+TGG | 0.528620 | 7_4:+23940312 | Msa1146400:CDS |
| TTCCTGATAGAAAACCTTGT+AGG | 0.540464 | 7_4:-23941281 | None:intergenic |
| GGCAAGGTATGGTTTGAAAA+GGG | 0.548981 | 7_4:+23940308 | Msa1146400:CDS |
| TCTATCAGGAAGTCCAGTAC+AGG | 0.551024 | 7_4:+23941293 | Msa1146400:CDS |
| ACTACTACTTCCAAATTCAA+AGG | 0.556173 | 7_4:-23940552 | None:intergenic |
| TGATATCACAAGTGGATGGA+AGG | 0.558355 | 7_4:+23941325 | Msa1146400:CDS |
| TGTTGAACATAGATTTCTGA+TGG | 0.558556 | 7_4:+23940861 | Msa1146400:CDS |
| ATATGTACCTCAAAATTGGA+AGG | 0.569214 | 7_4:-23940398 | None:intergenic |
| GAGCATCACTCTCTAGCTCA+TGG | 0.577825 | 7_4:+23940347 | Msa1146400:CDS |
| CTACAATTTGATATCACAAG+TGG | 0.598375 | 7_4:+23941317 | Msa1146400:CDS |
| AATTTGATATCACAAGTGGA+TGG | 0.625506 | 7_4:+23941321 | Msa1146400:CDS |
| AAATCACAAAAGAAGTCCAA+AGG | 0.633010 | 7_4:+23940590 | Msa1146400:CDS |
| TGTCTAAAGACTCCAAATGG+TGG | 0.636064 | 7_4:+23940254 | Msa1146400:CDS |
| TGGATGGAAGGCATTTGCAG+AGG | 0.673309 | 7_4:+23941337 | Msa1146400:CDS |
| CTTGCTCAAAACCTTCACCA+AGG | 0.698372 | 7_4:+23939398 | Msa1146400:CDS |
| TGTCTATTACCAAACATACG+TGG | 0.737084 | 7_4:-23941197 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CCAAAAAATACATAAAATTA+AGG | - | chr7_4:23939690-23939709 | None:intergenic | 15.0% |
| !!! | CCTTAATTTTATGTATTTTT+TGG | + | chr7_4:23939687-23939706 | Msa1146400:intron | 15.0% |
| !! | TCATATTTAACAATATGAAT+AGG | - | chr7_4:23939956-23939975 | None:intergenic | 15.0% |
| !! | TGTTAAATATGAAAAAATGA+AGG | + | chr7_4:23939964-23939983 | Msa1146400:intron | 15.0% |
| !! | GTTAAATATGAAAAAATGAA+GGG | + | chr7_4:23939965-23939984 | Msa1146400:intron | 15.0% |
| !! | CGAAAAATAATATTATGATT+TGG | + | chr7_4:23940073-23940092 | Msa1146400:intron | 15.0% |
| !!! | TAATTATTTTGCATTACTTT+AGG | - | chr7_4:23940131-23940150 | None:intergenic | 15.0% |
| !! | ATTTAAAAATAATTTACCTG+TGG | + | chr7_4:23940976-23940995 | Msa1146400:intron | 15.0% |
| !! | CCAAAAAATACATAAAATTA+AGG | - | chr7_4:23939690-23939709 | None:intergenic | 15.0% |
| !!! | CCTTAATTTTATGTATTTTT+TGG | + | chr7_4:23939687-23939706 | Msa1146400:intron | 15.0% |
| !! | TCATATTTAACAATATGAAT+AGG | - | chr7_4:23939956-23939975 | None:intergenic | 15.0% |
| !! | TGTTAAATATGAAAAAATGA+AGG | + | chr7_4:23939964-23939983 | Msa1146400:intron | 15.0% |
| !! | GTTAAATATGAAAAAATGAA+GGG | + | chr7_4:23939965-23939984 | Msa1146400:intron | 15.0% |
| !! | CGAAAAATAATATTATGATT+TGG | + | chr7_4:23940073-23940092 | Msa1146400:intron | 15.0% |
| !!! | TAATTATTTTGCATTACTTT+AGG | - | chr7_4:23940131-23940150 | None:intergenic | 15.0% |
| !! | ATTTAAAAATAATTTACCTG+TGG | + | chr7_4:23940976-23940995 | Msa1146400:intron | 15.0% |
| !! | AACATTATCAAAGAATCTAA+AGG | - | chr7_4:23939436-23939455 | None:intergenic | 20.0% |
| !! | AAACTTTAATATTACTTCAC+AGG | + | chr7_4:23939560-23939579 | Msa1146400:intron | 20.0% |
| !! | ACAAAATTCCCTAATTAAAT+TGG | - | chr7_4:23939906-23939925 | None:intergenic | 20.0% |
| !! | TTATAAAATTTGAATACCGT+AGG | + | chr7_4:23940038-23940057 | Msa1146400:intron | 20.0% |
| !! | TATAAAATTTGAATACCGTA+GGG | + | chr7_4:23940039-23940058 | Msa1146400:intron | 20.0% |
| !! | ATCGTACATATCAATATATA+TGG | + | chr7_4:23940161-23940180 | Msa1146400:intron | 20.0% |
| !! | TGGAAAATGGAAATTAAATT+TGG | + | chr7_4:23940274-23940293 | Msa1146400:CDS | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | + | chr7_4:23940287-23940306 | Msa1146400:CDS | 20.0% |
| !! | AAAAATATGTACCTCAAAAT+TGG | - | chr7_4:23940405-23940424 | None:intergenic | 20.0% |
| !!! | CCTTTTTTTTTTTTTACCTT+TGG | - | chr7_4:23940609-23940628 | None:intergenic | 20.0% |
| !! | CCAAAGGTAAAAAAAAAAAA+AGG | + | chr7_4:23940606-23940625 | Msa1146400:intron | 20.0% |
| !! | GTTAATGAATAAAAAATGTG+TGG | - | chr7_4:23941146-23941165 | None:intergenic | 20.0% |
| !! | AACATTATCAAAGAATCTAA+AGG | - | chr7_4:23939436-23939455 | None:intergenic | 20.0% |
| !! | AAACTTTAATATTACTTCAC+AGG | + | chr7_4:23939560-23939579 | Msa1146400:intron | 20.0% |
| !! | ACAAAATTCCCTAATTAAAT+TGG | - | chr7_4:23939906-23939925 | None:intergenic | 20.0% |
| !! | TTATAAAATTTGAATACCGT+AGG | + | chr7_4:23940038-23940057 | Msa1146400:intron | 20.0% |
| !! | TATAAAATTTGAATACCGTA+GGG | + | chr7_4:23940039-23940058 | Msa1146400:intron | 20.0% |
| !! | ATCGTACATATCAATATATA+TGG | + | chr7_4:23940161-23940180 | Msa1146400:intron | 20.0% |
| !! | TGGAAAATGGAAATTAAATT+TGG | + | chr7_4:23940274-23940293 | Msa1146400:CDS | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | + | chr7_4:23940287-23940306 | Msa1146400:CDS | 20.0% |
| !! | AAAAATATGTACCTCAAAAT+TGG | - | chr7_4:23940405-23940424 | None:intergenic | 20.0% |
| !!! | CCTTTTTTTTTTTTTACCTT+TGG | - | chr7_4:23940609-23940628 | None:intergenic | 20.0% |
| !! | CCAAAGGTAAAAAAAAAAAA+AGG | + | chr7_4:23940606-23940625 | Msa1146400:intron | 20.0% |
| !! | GTTAATGAATAAAAAATGTG+TGG | - | chr7_4:23941146-23941165 | None:intergenic | 20.0% |
| ! | ATGATCTTGAAAAAGTGAAT+TGG | - | chr7_4:23939377-23939396 | None:intergenic | 25.0% |
| !!! | ACATGATGTTACTTTGTATT+TGG | + | chr7_4:23939511-23939530 | Msa1146400:intron | 25.0% |
| !! | AGTTTACTTGCTAAAAATGA+TGG | + | chr7_4:23939724-23939743 | Msa1146400:intron | 25.0% |
| !! | TATTTCTCCACAAATTTTCT+TGG | - | chr7_4:23940209-23940228 | None:intergenic | 25.0% |
| ! | AGAAAATTTGTGGAGAAATA+TGG | + | chr7_4:23940209-23940228 | Msa1146400:CDS | 25.0% |
| !! | CTTTTTATCTTCAACTCTTT+TGG | - | chr7_4:23940459-23940478 | None:intergenic | 25.0% |
| ! | TACTAAATTGGAACATTATC+AGG | - | chr7_4:23940675-23940694 | None:intergenic | 25.0% |
| !! | TGATAATGTTCCAATTTAGT+AGG | + | chr7_4:23940674-23940693 | Msa1146400:intron | 25.0% |
| !! | TCTAGTCTTTAGTAGATTAA+GGG | + | chr7_4:23940933-23940952 | Msa1146400:intron | 25.0% |
| !! | AAATAATTTACCTGTGGTTT+TGG | + | chr7_4:23940982-23941001 | Msa1146400:intron | 25.0% |
| !!! | CATTCGTTTTTTCTTTTGTT+TGG | + | chr7_4:23941165-23941184 | Msa1146400:intron | 25.0% |
| !!! | TTTGATTTGGATAAGAAAAG+AGG | + | chr7_4:23941221-23941240 | Msa1146400:CDS | 25.0% |
| !!! | AAGAGGAGATATTTATTTTC+AGG | + | chr7_4:23941238-23941257 | Msa1146400:CDS | 25.0% |
| !!! | TATTTTCAGGTGTTAAATGA+AGG | + | chr7_4:23941251-23941270 | Msa1146400:CDS | 25.0% |
| ! | TCTAAAGATATGAACAATGA+AGG | - | chr7_4:23941423-23941442 | None:intergenic | 25.0% |
| ! | ATGATCTTGAAAAAGTGAAT+TGG | - | chr7_4:23939377-23939396 | None:intergenic | 25.0% |
| !!! | ACATGATGTTACTTTGTATT+TGG | + | chr7_4:23939511-23939530 | Msa1146400:intron | 25.0% |
| !! | AGTTTACTTGCTAAAAATGA+TGG | + | chr7_4:23939724-23939743 | Msa1146400:intron | 25.0% |
| !! | TATTTCTCCACAAATTTTCT+TGG | - | chr7_4:23940209-23940228 | None:intergenic | 25.0% |
| ! | AGAAAATTTGTGGAGAAATA+TGG | + | chr7_4:23940209-23940228 | Msa1146400:CDS | 25.0% |
| !! | CTTTTTATCTTCAACTCTTT+TGG | - | chr7_4:23940459-23940478 | None:intergenic | 25.0% |
| ! | TACTAAATTGGAACATTATC+AGG | - | chr7_4:23940675-23940694 | None:intergenic | 25.0% |
| !! | TGATAATGTTCCAATTTAGT+AGG | + | chr7_4:23940674-23940693 | Msa1146400:intron | 25.0% |
| !! | TCTAGTCTTTAGTAGATTAA+GGG | + | chr7_4:23940933-23940952 | Msa1146400:intron | 25.0% |
| !! | AAATAATTTACCTGTGGTTT+TGG | + | chr7_4:23940982-23941001 | Msa1146400:intron | 25.0% |
| !!! | CATTCGTTTTTTCTTTTGTT+TGG | + | chr7_4:23941165-23941184 | Msa1146400:intron | 25.0% |
| !!! | TTTGATTTGGATAAGAAAAG+AGG | + | chr7_4:23941221-23941240 | Msa1146400:CDS | 25.0% |
| !!! | AAGAGGAGATATTTATTTTC+AGG | + | chr7_4:23941238-23941257 | Msa1146400:CDS | 25.0% |
| !!! | TATTTTCAGGTGTTAAATGA+AGG | + | chr7_4:23941251-23941270 | Msa1146400:CDS | 25.0% |
| ! | TCTAAAGATATGAACAATGA+AGG | - | chr7_4:23941423-23941442 | None:intergenic | 25.0% |
| AAAATGACTCAATTGCTTTC+AGG | - | chr7_4:23939641-23939660 | None:intergenic | 30.0% | |
| AAAAATGATGGTTGCTCTTT+AGG | + | chr7_4:23939736-23939755 | Msa1146400:intron | 30.0% | |
| ! | TGGTCTTGCCAATTTAATTA+GGG | + | chr7_4:23939895-23939914 | Msa1146400:intron | 30.0% |
| ATGAAAAAATGAAGGGTTTC+TGG | + | chr7_4:23939972-23939991 | Msa1146400:intron | 30.0% | |
| ! | GTCTTTAGACATGTTTCTTT+TGG | - | chr7_4:23940245-23940264 | None:intergenic | 30.0% |
| ! | AATTTCCATTTTCCACCATT+TGG | - | chr7_4:23940269-23940288 | None:intergenic | 30.0% |
| CATATCTAAAAAGCAGAAGA+TGG | - | chr7_4:23940373-23940392 | None:intergenic | 30.0% | |
| ! | TGAAAAACCTTCCAATTTTG+AGG | + | chr7_4:23940391-23940410 | Msa1146400:CDS | 30.0% |
| ATATGTACCTCAAAATTGGA+AGG | - | chr7_4:23940401-23940420 | None:intergenic | 30.0% | |
| !! | TATTTTTGAAAAGAGTGCGT+TGG | + | chr7_4:23940418-23940437 | Msa1146400:CDS | 30.0% |
| ! | TATCTTCAACTCTTTTGGTA+GGG | - | chr7_4:23940454-23940473 | None:intergenic | 30.0% |
| ! | TTATCTTCAACTCTTTTGGT+AGG | - | chr7_4:23940455-23940474 | None:intergenic | 30.0% |
| AAAAAGATCTCCATTGATCA+AGG | + | chr7_4:23940473-23940492 | Msa1146400:CDS | 30.0% | |
| AGATTCATTTCCTTGATCAA+TGG | - | chr7_4:23940486-23940505 | None:intergenic | 30.0% | |
| CAAGGAAATGAATCTCTAAA+TGG | + | chr7_4:23940491-23940510 | Msa1146400:CDS | 30.0% | |
| AAAGCTAACTCCTTTGAATT+TGG | + | chr7_4:23940542-23940561 | Msa1146400:CDS | 30.0% | |
| ACTACTACTTCCAAATTCAA+AGG | - | chr7_4:23940555-23940574 | None:intergenic | 30.0% | |
| AGTAGTAGTTGTGTTAAAGT+TGG | + | chr7_4:23940566-23940585 | Msa1146400:CDS | 30.0% | |
| GTAGTAGTTGTGTTAAAGTT+GGG | + | chr7_4:23940567-23940586 | Msa1146400:CDS | 30.0% | |
| AAATCACAAAAGAAGTCCAA+AGG | + | chr7_4:23940590-23940609 | Msa1146400:CDS | 30.0% | |
| ACATGAAATGCCTACTAAAT+TGG | - | chr7_4:23940687-23940706 | None:intergenic | 30.0% | |
| TGCAAAATTGGAACATTATC+AGG | - | chr7_4:23940734-23940753 | None:intergenic | 30.0% | |
| !! | TGATAATGTTCCAATTTTGC+AGG | + | chr7_4:23940733-23940752 | Msa1146400:intron | 30.0% |
| ATGACAACAACAACAAATGA+TGG | - | chr7_4:23940829-23940848 | None:intergenic | 30.0% | |
| TGTTGAACATAGATTTCTGA+TGG | + | chr7_4:23940861-23940880 | Msa1146400:CDS | 30.0% | |
| ! | CTAGAGAAAGATTTGGTTAT+TGG | - | chr7_4:23940918-23940937 | None:intergenic | 30.0% |
| CTAAAGACTAGAGAAAGATT+TGG | - | chr7_4:23940925-23940944 | None:intergenic | 30.0% | |
| ! | CTCTAGTCTTTAGTAGATTA+AGG | + | chr7_4:23940932-23940951 | Msa1146400:intron | 30.0% |
| ! | CTAGTCTTTAGTAGATTAAG+GGG | + | chr7_4:23940934-23940953 | Msa1146400:intron | 30.0% |
| TGGTAATAGACACTTTGATT+TGG | + | chr7_4:23941208-23941227 | Msa1146400:CDS | 30.0% | |
| CTACAATTTGATATCACAAG+TGG | + | chr7_4:23941317-23941336 | Msa1146400:CDS | 30.0% | |
| AATTTGATATCACAAGTGGA+TGG | + | chr7_4:23941321-23941340 | Msa1146400:CDS | 30.0% | |
| AAAATGACTCAATTGCTTTC+AGG | - | chr7_4:23939641-23939660 | None:intergenic | 30.0% | |
| AAAAATGATGGTTGCTCTTT+AGG | + | chr7_4:23939736-23939755 | Msa1146400:intron | 30.0% | |
| ! | TGGTCTTGCCAATTTAATTA+GGG | + | chr7_4:23939895-23939914 | Msa1146400:intron | 30.0% |
| ATGAAAAAATGAAGGGTTTC+TGG | + | chr7_4:23939972-23939991 | Msa1146400:intron | 30.0% | |
| ! | GTCTTTAGACATGTTTCTTT+TGG | - | chr7_4:23940245-23940264 | None:intergenic | 30.0% |
| ! | AATTTCCATTTTCCACCATT+TGG | - | chr7_4:23940269-23940288 | None:intergenic | 30.0% |
| CATATCTAAAAAGCAGAAGA+TGG | - | chr7_4:23940373-23940392 | None:intergenic | 30.0% | |
| ! | TGAAAAACCTTCCAATTTTG+AGG | + | chr7_4:23940391-23940410 | Msa1146400:CDS | 30.0% |
| ATATGTACCTCAAAATTGGA+AGG | - | chr7_4:23940401-23940420 | None:intergenic | 30.0% | |
| !! | TATTTTTGAAAAGAGTGCGT+TGG | + | chr7_4:23940418-23940437 | Msa1146400:CDS | 30.0% |
| ! | TATCTTCAACTCTTTTGGTA+GGG | - | chr7_4:23940454-23940473 | None:intergenic | 30.0% |
| ! | TTATCTTCAACTCTTTTGGT+AGG | - | chr7_4:23940455-23940474 | None:intergenic | 30.0% |
| AAAAAGATCTCCATTGATCA+AGG | + | chr7_4:23940473-23940492 | Msa1146400:CDS | 30.0% | |
| AGATTCATTTCCTTGATCAA+TGG | - | chr7_4:23940486-23940505 | None:intergenic | 30.0% | |
| CAAGGAAATGAATCTCTAAA+TGG | + | chr7_4:23940491-23940510 | Msa1146400:CDS | 30.0% | |
| AAAGCTAACTCCTTTGAATT+TGG | + | chr7_4:23940542-23940561 | Msa1146400:CDS | 30.0% | |
| ACTACTACTTCCAAATTCAA+AGG | - | chr7_4:23940555-23940574 | None:intergenic | 30.0% | |
| AGTAGTAGTTGTGTTAAAGT+TGG | + | chr7_4:23940566-23940585 | Msa1146400:CDS | 30.0% | |
| GTAGTAGTTGTGTTAAAGTT+GGG | + | chr7_4:23940567-23940586 | Msa1146400:CDS | 30.0% | |
| AAATCACAAAAGAAGTCCAA+AGG | + | chr7_4:23940590-23940609 | Msa1146400:CDS | 30.0% | |
| ACATGAAATGCCTACTAAAT+TGG | - | chr7_4:23940687-23940706 | None:intergenic | 30.0% | |
| TGCAAAATTGGAACATTATC+AGG | - | chr7_4:23940734-23940753 | None:intergenic | 30.0% | |
| !! | TGATAATGTTCCAATTTTGC+AGG | + | chr7_4:23940733-23940752 | Msa1146400:intron | 30.0% |
| ATGACAACAACAACAAATGA+TGG | - | chr7_4:23940829-23940848 | None:intergenic | 30.0% | |
| TGTTGAACATAGATTTCTGA+TGG | + | chr7_4:23940861-23940880 | Msa1146400:CDS | 30.0% | |
| ! | CTAGAGAAAGATTTGGTTAT+TGG | - | chr7_4:23940918-23940937 | None:intergenic | 30.0% |
| CTAAAGACTAGAGAAAGATT+TGG | - | chr7_4:23940925-23940944 | None:intergenic | 30.0% | |
| ! | CTCTAGTCTTTAGTAGATTA+AGG | + | chr7_4:23940932-23940951 | Msa1146400:intron | 30.0% |
| ! | CTAGTCTTTAGTAGATTAAG+GGG | + | chr7_4:23940934-23940953 | Msa1146400:intron | 30.0% |
| TGGTAATAGACACTTTGATT+TGG | + | chr7_4:23941208-23941227 | Msa1146400:CDS | 30.0% | |
| CTACAATTTGATATCACAAG+TGG | + | chr7_4:23941317-23941336 | Msa1146400:CDS | 30.0% | |
| AATTTGATATCACAAGTGGA+TGG | + | chr7_4:23941321-23941340 | Msa1146400:CDS | 30.0% | |
| CCTTCTGTTATGTCATCATA+AGG | - | chr7_4:23939590-23939609 | None:intergenic | 35.0% | |
| CCTTATGATGACATAACAGA+AGG | + | chr7_4:23939587-23939606 | Msa1146400:intron | 35.0% | |
| ! | GCTGCTTTAATTAGAAACTG+AGG | + | chr7_4:23939789-23939808 | Msa1146400:intron | 35.0% |
| GCTTTAATTAGAAACTGAGG+AGG | + | chr7_4:23939792-23939811 | Msa1146400:intron | 35.0% | |
| AGCTTGAAACACATCAGATT+GGG | - | chr7_4:23939835-23939854 | None:intergenic | 35.0% | |
| TAGCTTGAAACACATCAGAT+TGG | - | chr7_4:23939836-23939855 | None:intergenic | 35.0% | |
| AATCTGATGTGTTTCAAGCT+AGG | + | chr7_4:23939835-23939854 | Msa1146400:intron | 35.0% | |
| !! | CTGGTCTTGCCAATTTAATT+AGG | + | chr7_4:23939894-23939913 | Msa1146400:intron | 35.0% |
| GGATGTATGAAAAGAGAGAA+GGG | - | chr7_4:23939935-23939954 | None:intergenic | 35.0% | |
| AGGATGTATGAAAAGAGAGA+AGG | - | chr7_4:23939936-23939955 | None:intergenic | 35.0% | |
| ! | AAAAAATGAAGGGTTTCTGG+CGG | + | chr7_4:23939975-23939994 | Msa1146400:intron | 35.0% |
| GATGATGCCAAGAAAATTTG+TGG | + | chr7_4:23940199-23940218 | Msa1146400:intron | 35.0% | |
| ACATGTCTAAAGACTCCAAA+TGG | + | chr7_4:23940251-23940270 | Msa1146400:CDS | 35.0% | |
| TTTGGTAAAAAGTGATGGCA+AGG | + | chr7_4:23940292-23940311 | Msa1146400:CDS | 35.0% | |
| TAAAAAGTGATGGCAAGGTA+TGG | + | chr7_4:23940297-23940316 | Msa1146400:CDS | 35.0% | |
| !! | CACTTGTTTTCCTGCAAAAT+TGG | - | chr7_4:23940746-23940765 | None:intergenic | 35.0% |
| CAGAATATACCACGTATGTT+TGG | + | chr7_4:23941188-23941207 | Msa1146400:intron | 35.0% | |
| TGTCTATTACCAAACATACG+TGG | - | chr7_4:23941200-23941219 | None:intergenic | 35.0% | |
| AGGTGTTAAATGAAGGAGTT+TGG | + | chr7_4:23941258-23941277 | Msa1146400:CDS | 35.0% | |
| TTCCTGATAGAAAACCTTGT+AGG | - | chr7_4:23941284-23941303 | None:intergenic | 35.0% | |
| ATCAAATTGTAGTCCTGTAC+TGG | - | chr7_4:23941309-23941328 | None:intergenic | 35.0% | |
| GAGGACAATAACTTGAAAGT+TGG | + | chr7_4:23941356-23941375 | Msa1146400:CDS | 35.0% | |
| CCTTCTGTTATGTCATCATA+AGG | - | chr7_4:23939590-23939609 | None:intergenic | 35.0% | |
| CCTTATGATGACATAACAGA+AGG | + | chr7_4:23939587-23939606 | Msa1146400:intron | 35.0% | |
| ! | GCTGCTTTAATTAGAAACTG+AGG | + | chr7_4:23939789-23939808 | Msa1146400:intron | 35.0% |
| GCTTTAATTAGAAACTGAGG+AGG | + | chr7_4:23939792-23939811 | Msa1146400:intron | 35.0% | |
| AGCTTGAAACACATCAGATT+GGG | - | chr7_4:23939835-23939854 | None:intergenic | 35.0% | |
| TAGCTTGAAACACATCAGAT+TGG | - | chr7_4:23939836-23939855 | None:intergenic | 35.0% | |
| AATCTGATGTGTTTCAAGCT+AGG | + | chr7_4:23939835-23939854 | Msa1146400:intron | 35.0% | |
| !! | CTGGTCTTGCCAATTTAATT+AGG | + | chr7_4:23939894-23939913 | Msa1146400:intron | 35.0% |
| GGATGTATGAAAAGAGAGAA+GGG | - | chr7_4:23939935-23939954 | None:intergenic | 35.0% | |
| AGGATGTATGAAAAGAGAGA+AGG | - | chr7_4:23939936-23939955 | None:intergenic | 35.0% | |
| ! | AAAAAATGAAGGGTTTCTGG+CGG | + | chr7_4:23939975-23939994 | Msa1146400:intron | 35.0% |
| GATGATGCCAAGAAAATTTG+TGG | + | chr7_4:23940199-23940218 | Msa1146400:intron | 35.0% | |
| ACATGTCTAAAGACTCCAAA+TGG | + | chr7_4:23940251-23940270 | Msa1146400:CDS | 35.0% | |
| TTTGGTAAAAAGTGATGGCA+AGG | + | chr7_4:23940292-23940311 | Msa1146400:CDS | 35.0% | |
| TAAAAAGTGATGGCAAGGTA+TGG | + | chr7_4:23940297-23940316 | Msa1146400:CDS | 35.0% | |
| !! | CACTTGTTTTCCTGCAAAAT+TGG | - | chr7_4:23940746-23940765 | None:intergenic | 35.0% |
| CAGAATATACCACGTATGTT+TGG | + | chr7_4:23941188-23941207 | Msa1146400:intron | 35.0% | |
| TGTCTATTACCAAACATACG+TGG | - | chr7_4:23941200-23941219 | None:intergenic | 35.0% | |
| AGGTGTTAAATGAAGGAGTT+TGG | + | chr7_4:23941258-23941277 | Msa1146400:CDS | 35.0% | |
| TTCCTGATAGAAAACCTTGT+AGG | - | chr7_4:23941284-23941303 | None:intergenic | 35.0% | |
| ATCAAATTGTAGTCCTGTAC+TGG | - | chr7_4:23941309-23941328 | None:intergenic | 35.0% | |
| GAGGACAATAACTTGAAAGT+TGG | + | chr7_4:23941356-23941375 | Msa1146400:CDS | 35.0% | |
| TTACAAGCTTTCCTTGGTGA+AGG | - | chr7_4:23939412-23939431 | None:intergenic | 40.0% | |
| AAAGGCTTACAAGCTTTCCT+TGG | - | chr7_4:23939418-23939437 | None:intergenic | 40.0% | |
| !! | GCAATTGAGTCATTTTACCC+CGG | + | chr7_4:23939645-23939664 | Msa1146400:intron | 40.0% |
| GATGTGTTTCAAGCTAGGTT+AGG | + | chr7_4:23939840-23939859 | Msa1146400:intron | 40.0% | |
| AGTTTCACACGCCACAAATT+TGG | - | chr7_4:23939869-23939888 | None:intergenic | 40.0% | |
| GTATGAAAAGAGAGAAGGGT+GGG | - | chr7_4:23939931-23939950 | None:intergenic | 40.0% | |
| TGTATGAAAAGAGAGAAGGG+TGG | - | chr7_4:23939932-23939951 | None:intergenic | 40.0% | |
| TGTCTAAAGACTCCAAATGG+TGG | + | chr7_4:23940254-23940273 | Msa1146400:CDS | 40.0% | |
| ! | AGACTCCAAATGGTGGAAAA+TGG | + | chr7_4:23940261-23940280 | Msa1146400:CDS | 40.0% |
| TGGCAAGGTATGGTTTGAAA+AGG | + | chr7_4:23940307-23940326 | Msa1146400:CDS | 40.0% | |
| GGCAAGGTATGGTTTGAAAA+GGG | + | chr7_4:23940308-23940327 | Msa1146400:CDS | 40.0% | |
| AGGTATGGTTTGAAAAGGGT+TGG | + | chr7_4:23940312-23940331 | Msa1146400:CDS | 40.0% | |
| CTTAAGAGAAACACACTCTG+AGG | - | chr7_4:23941015-23941034 | None:intergenic | 40.0% | |
| CTCAGAGTGTGTTTCTCTTA+AGG | + | chr7_4:23941013-23941032 | Msa1146400:intron | 40.0% | |
| TGTGTTTCTCTTAAGGTCTC+AGG | + | chr7_4:23941020-23941039 | Msa1146400:intron | 40.0% | |
| GTCTCAGGTAAGATTTACCT+CGG | + | chr7_4:23941035-23941054 | Msa1146400:intron | 40.0% | |
| !! | GATTTACCTCGGTGCAATTT+TGG | + | chr7_4:23941046-23941065 | Msa1146400:intron | 40.0% |
| TGATATCACAAGTGGATGGA+AGG | + | chr7_4:23941325-23941344 | Msa1146400:CDS | 40.0% | |
| TTACAAGCTTTCCTTGGTGA+AGG | - | chr7_4:23939412-23939431 | None:intergenic | 40.0% | |
| AAAGGCTTACAAGCTTTCCT+TGG | - | chr7_4:23939418-23939437 | None:intergenic | 40.0% | |
| !! | GCAATTGAGTCATTTTACCC+CGG | + | chr7_4:23939645-23939664 | Msa1146400:intron | 40.0% |
| GATGTGTTTCAAGCTAGGTT+AGG | + | chr7_4:23939840-23939859 | Msa1146400:intron | 40.0% | |
| AGTTTCACACGCCACAAATT+TGG | - | chr7_4:23939869-23939888 | None:intergenic | 40.0% | |
| GTATGAAAAGAGAGAAGGGT+GGG | - | chr7_4:23939931-23939950 | None:intergenic | 40.0% | |
| TGTATGAAAAGAGAGAAGGG+TGG | - | chr7_4:23939932-23939951 | None:intergenic | 40.0% | |
| TGTCTAAAGACTCCAAATGG+TGG | + | chr7_4:23940254-23940273 | Msa1146400:CDS | 40.0% | |
| ! | AGACTCCAAATGGTGGAAAA+TGG | + | chr7_4:23940261-23940280 | Msa1146400:CDS | 40.0% |
| TGGCAAGGTATGGTTTGAAA+AGG | + | chr7_4:23940307-23940326 | Msa1146400:CDS | 40.0% | |
| GGCAAGGTATGGTTTGAAAA+GGG | + | chr7_4:23940308-23940327 | Msa1146400:CDS | 40.0% | |
| AGGTATGGTTTGAAAAGGGT+TGG | + | chr7_4:23940312-23940331 | Msa1146400:CDS | 40.0% | |
| CTTAAGAGAAACACACTCTG+AGG | - | chr7_4:23941015-23941034 | None:intergenic | 40.0% | |
| CTCAGAGTGTGTTTCTCTTA+AGG | + | chr7_4:23941013-23941032 | Msa1146400:intron | 40.0% | |
| TGTGTTTCTCTTAAGGTCTC+AGG | + | chr7_4:23941020-23941039 | Msa1146400:intron | 40.0% | |
| GTCTCAGGTAAGATTTACCT+CGG | + | chr7_4:23941035-23941054 | Msa1146400:intron | 40.0% | |
| !! | GATTTACCTCGGTGCAATTT+TGG | + | chr7_4:23941046-23941065 | Msa1146400:intron | 40.0% |
| TGATATCACAAGTGGATGGA+AGG | + | chr7_4:23941325-23941344 | Msa1146400:CDS | 40.0% | |
| CTTGCTCAAAACCTTCACCA+AGG | + | chr7_4:23939398-23939417 | Msa1146400:CDS | 45.0% | |
| !! | CATTTTACCCCGGTTCGAAT+TGG | + | chr7_4:23939655-23939674 | Msa1146400:intron | 45.0% |
| AGGTTAGGCCACCAAATTTG+TGG | + | chr7_4:23939855-23939874 | Msa1146400:intron | 45.0% | |
| TTCACACGCCACAAATTTGG+TGG | - | chr7_4:23939866-23939885 | None:intergenic | 45.0% | |
| !!! | GGCGGTGTTTTAACGTGTTT+TGG | + | chr7_4:23939993-23940012 | Msa1146400:intron | 45.0% |
| !! | TTACCTCGGTGCAATTTTGG+TGG | + | chr7_4:23941049-23941068 | Msa1146400:intron | 45.0% |
| ATGAAGGAGTTTGGCCTACA+AGG | + | chr7_4:23941267-23941286 | Msa1146400:CDS | 45.0% | |
| ! | GGCCTACAAGGTTTTCTATC+AGG | + | chr7_4:23941279-23941298 | Msa1146400:CDS | 45.0% |
| TCTATCAGGAAGTCCAGTAC+AGG | + | chr7_4:23941293-23941312 | Msa1146400:CDS | 45.0% | |
| CTTGCTCAAAACCTTCACCA+AGG | + | chr7_4:23939398-23939417 | Msa1146400:CDS | 45.0% | |
| !! | CATTTTACCCCGGTTCGAAT+TGG | + | chr7_4:23939655-23939674 | Msa1146400:intron | 45.0% |
| AGGTTAGGCCACCAAATTTG+TGG | + | chr7_4:23939855-23939874 | Msa1146400:intron | 45.0% | |
| TTCACACGCCACAAATTTGG+TGG | - | chr7_4:23939866-23939885 | None:intergenic | 45.0% | |
| !!! | GGCGGTGTTTTAACGTGTTT+TGG | + | chr7_4:23939993-23940012 | Msa1146400:intron | 45.0% |
| !! | TTACCTCGGTGCAATTTTGG+TGG | + | chr7_4:23941049-23941068 | Msa1146400:intron | 45.0% |
| ATGAAGGAGTTTGGCCTACA+AGG | + | chr7_4:23941267-23941286 | Msa1146400:CDS | 45.0% | |
| ! | GGCCTACAAGGTTTTCTATC+AGG | + | chr7_4:23941279-23941298 | Msa1146400:CDS | 45.0% |
| TCTATCAGGAAGTCCAGTAC+AGG | + | chr7_4:23941293-23941312 | Msa1146400:CDS | 45.0% | |
| TCAAGCGAGCCAATTCGAAC+CGG | - | chr7_4:23939667-23939686 | None:intergenic | 50.0% | |
| TGGCGTGTGAAACTGTGAAC+TGG | + | chr7_4:23939875-23939894 | Msa1146400:intron | 50.0% | |
| TTCGTTTCTCTCACGCCCTA+CGG | - | chr7_4:23940057-23940076 | None:intergenic | 50.0% | |
| ! | GAGCATCACTCTCTAGCTCA+TGG | + | chr7_4:23940347-23940366 | Msa1146400:CDS | 50.0% |
| ! | AGGTCTGAAGCCAAAACCAC+AGG | - | chr7_4:23940995-23941014 | None:intergenic | 50.0% |
| CTACCACCAAAATTGCACCG+AGG | - | chr7_4:23941055-23941074 | None:intergenic | 50.0% | |
| !! | TGGATGGAAGGCATTTGCAG+AGG | + | chr7_4:23941337-23941356 | Msa1146400:CDS | 50.0% |
| TCAAGCGAGCCAATTCGAAC+CGG | - | chr7_4:23939667-23939686 | None:intergenic | 50.0% | |
| TGGCGTGTGAAACTGTGAAC+TGG | + | chr7_4:23939875-23939894 | Msa1146400:intron | 50.0% | |
| TTCGTTTCTCTCACGCCCTA+CGG | - | chr7_4:23940057-23940076 | None:intergenic | 50.0% | |
| ! | GAGCATCACTCTCTAGCTCA+TGG | + | chr7_4:23940347-23940366 | Msa1146400:CDS | 50.0% |
| ! | AGGTCTGAAGCCAAAACCAC+AGG | - | chr7_4:23940995-23941014 | None:intergenic | 50.0% |
| CTACCACCAAAATTGCACCG+AGG | - | chr7_4:23941055-23941074 | None:intergenic | 50.0% | |
| !! | TGGATGGAAGGCATTTGCAG+AGG | + | chr7_4:23941337-23941356 | Msa1146400:CDS | 50.0% |
| AAGCGAGCCAATTCGAACCG+GGG | - | chr7_4:23939665-23939684 | None:intergenic | 55.0% | |
| CAAGCGAGCCAATTCGAACC+GGG | - | chr7_4:23939666-23939685 | None:intergenic | 55.0% | |
| AAGCGAGCCAATTCGAACCG+GGG | - | chr7_4:23939665-23939684 | None:intergenic | 55.0% | |
| CAAGCGAGCCAATTCGAACC+GGG | - | chr7_4:23939666-23939685 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 23939347 | 23941496 | 23939347 | ID=Msa1146400;Name=Msa1146400 |
| chr7_4 | mRNA | 23939347 | 23941496 | 23939347 | ID=Msa1146400-mRNA-1;Parent=Msa1146400;Name=Msa1146400-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|0|0|1|1|0.75|4|0|308 |
| chr7_4 | exon | 23939347 | 23939427 | 23939347 | ID=Msa1146400-mRNA-1:exon:5996;Parent=Msa1146400-mRNA-1 |
| chr7_4 | exon | 23940200 | 23940611 | 23940200 | ID=Msa1146400-mRNA-1:exon:5997;Parent=Msa1146400-mRNA-1 |
| chr7_4 | exon | 23940755 | 23940882 | 23940755 | ID=Msa1146400-mRNA-1:exon:5998;Parent=Msa1146400-mRNA-1 |
| chr7_4 | exon | 23941191 | 23941496 | 23941191 | ID=Msa1146400-mRNA-1:exon:5999;Parent=Msa1146400-mRNA-1 |
| chr7_4 | CDS | 23939347 | 23939427 | 23939347 | ID=Msa1146400-mRNA-1:cds;Parent=Msa1146400-mRNA-1 |
| chr7_4 | CDS | 23940200 | 23940611 | 23940200 | ID=Msa1146400-mRNA-1:cds;Parent=Msa1146400-mRNA-1 |
| chr7_4 | CDS | 23940755 | 23940882 | 23940755 | ID=Msa1146400-mRNA-1:cds;Parent=Msa1146400-mRNA-1 |
| chr7_4 | CDS | 23941191 | 23941496 | 23941191 | ID=Msa1146400-mRNA-1:cds;Parent=Msa1146400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
