AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1146420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1146420 MtrunA17_Chr3g0131891 74.648 142 36 0 1 142 7 148 3.84e-74 224
Msa1146420 MtrunA17_Chr7g0233561 71.831 142 40 0 1 142 6 147 2.03e-71 218
Msa1146420 MtrunA17_Chr7g0233571 68.000 150 45 1 1 150 1 147 2.57e-69 209
Msa1146420 MtrunA17_Chr7g0233541 81.197 117 20 1 28 142 1 117 9.61e-63 194
Msa1146420 MtrunA17_Chr7g0233531 73.913 115 30 0 28 142 1 115 1.48e-58 183
Msa1146420 MtrunA17_Chr7g0233521 81.373 102 19 0 28 129 1 102 3.21e-55 174
Msa1146420 MtrunA17_Chr8g0390841 53.465 101 47 0 11 111 37 137 2.91e-35 127
Msa1146420 MtrunA17_Chr5g0419201 44.348 115 61 1 9 120 12 126 4.35e-32 113
Msa1146420 MtrunA17_Chr3g0103191 50.485 103 49 1 11 113 10 110 4.68e-32 114
Msa1146420 MtrunA17_Chr3g0103151 49.038 104 51 1 11 114 10 111 4.79e-31 109
Msa1146420 MtrunA17_Chr1g0163071 52.941 85 40 0 28 112 1 85 1.68e-29 109
Msa1146420 MtrunA17_Chr3g0103181 48.077 104 52 1 11 114 10 111 9.04e-29 106
Msa1146420 MtrunA17_Chr1g0208771 53.012 83 39 0 29 111 13 95 7.07e-28 107
Msa1146420 MtrunA17_Chr6g0467351 40.000 145 76 4 11 146 13 155 1.97e-24 94.4
Msa1146420 MtrunA17_Chr3g0103171 46.512 86 46 0 29 114 6 91 1.52e-23 92.8
Msa1146420 MtrunA17_Chr4g0033961 40.385 104 62 0 10 113 3 106 1.93e-23 94.7
Msa1146420 MtrunA17_Chr1g0163101 34.752 141 87 3 9 147 13 150 2.06e-23 90.5
Msa1146420 MtrunA17_Chr1g0162441 38.596 114 67 1 13 123 7 120 4.31e-23 94.0
Msa1146420 MtrunA17_Chr4g0067431 45.631 103 55 1 11 112 13 115 2.21e-22 90.9
Msa1146420 MtrunA17_Chr1g0163251 45.192 104 51 2 12 115 8 105 7.20e-22 90.1
Msa1146420 MtrunA17_Chr1g0171611 41.748 103 58 1 13 115 9 109 1.07e-21 88.6
Msa1146420 MtrunA17_Chr1g0163131 36.434 129 79 2 7 135 12 137 1.09e-21 88.6
Msa1146420 MtrunA17_Chr1g0163191 42.308 104 54 2 12 115 8 105 7.60e-21 83.2
Msa1146420 MtrunA17_Chr1g0163181 38.525 122 72 2 22 142 14 133 1.08e-20 87.0
Msa1146420 MtrunA17_Chr3g0077411 34.167 120 75 1 7 126 19 134 1.81e-20 86.7
Msa1146420 MtrunA17_Chr3g0077411 36.190 105 66 1 9 112 258 362 2.15e-20 86.7
Msa1146420 MtrunA17_Chr1g0163231 39.806 103 60 1 13 115 9 109 1.94e-20 85.1
Msa1146420 MtrunA17_Chr3g0077461 38.462 104 64 0 9 112 233 336 2.46e-20 86.3
Msa1146420 MtrunA17_Chr3g0077461 35.714 84 54 0 29 112 23 106 1.67e-17 78.2
Msa1146420 MtrunA17_Chr1g0163121 48.315 89 43 2 27 115 9 94 4.14e-20 80.9
Msa1146420 MtrunA17_Chr3g0077381 33.333 111 71 1 27 137 34 141 1.77e-19 84.0
Msa1146420 MtrunA17_Chr3g0077381 35.577 104 67 0 9 112 243 346 8.27e-16 73.6
Msa1146420 MtrunA17_Chr1g0162411 38.235 102 61 1 13 114 7 106 3.54e-19 82.8
Msa1146420 MtrunA17_Chr1g0163241 42.708 96 48 2 29 119 23 116 7.30e-19 78.6
Msa1146420 MtrunA17_Chr4g0009491 32.432 111 72 1 27 137 11 118 1.83e-18 80.9
Msa1146420 MtrunA17_Chr4g0009491 36.538 104 66 0 9 112 221 324 1.52e-17 78.2
Msa1146420 MtrunA17_Chr1g0163221 38.318 107 65 1 7 112 5 111 2.14e-18 80.1
Msa1146420 MtrunA17_Chr3g0077451 30.081 123 77 1 27 149 10 123 3.88e-18 78.2
Msa1146420 MtrunA17_Chr1g0163061 41.748 103 59 1 11 112 13 115 8.31e-18 77.8
Msa1146420 MtrunA17_Chr1g0163141 40.000 100 57 2 27 126 9 105 1.08e-17 75.9
Msa1146420 MtrunA17_Chr1g0163261 34.615 130 83 1 13 142 9 136 1.62e-17 77.4
Msa1146420 MtrunA17_Chr1g0163201 42.529 87 48 1 29 115 19 103 2.15e-17 77.8
Msa1146420 MtrunA17_Chr3g0077361 30.137 146 86 4 3 139 30 168 1.01e-16 76.3
Msa1146420 MtrunA17_Chr5g0429931 32.773 119 75 2 29 143 11 128 2.21e-16 73.6
Msa1146420 MtrunA17_Chr1g0162161 35.514 107 66 2 28 134 3 106 2.30e-16 71.6
Msa1146420 MtrunA17_Chr6g0476181 40.404 99 56 2 28 126 1 96 3.74e-16 71.2
Msa1146420 MtrunA17_Chr1g0163081 39.583 96 55 2 28 123 5 97 2.74e-15 68.6
Msa1146420 MtrunA17_Chr1g0154071 31.496 127 82 2 9 132 153 277 3.88e-14 68.6
Msa1146420 MtrunA17_Chr1g0154071 28.866 97 68 1 11 107 26 121 3.93e-11 60.1
Msa1146420 MtrunA17_Chr1g0154101 33.696 92 61 0 11 102 23 114 4.60e-14 68.6
Msa1146420 MtrunA17_Chr1g0154101 31.731 104 66 3 11 111 182 283 1.30e-12 64.3
Msa1146420 MtrunA17_Chr1g0154251 32.258 93 62 1 11 103 25 116 6.57e-14 68.2
Msa1146420 MtrunA17_Chr1g0154211 33.333 93 61 1 11 103 21 112 8.18e-14 67.8
Msa1146420 MtrunA17_Chr1g0154161 30.928 97 67 0 11 107 28 124 1.03e-13 67.0
Msa1146420 MtrunA17_Chr1g0163161 36.082 97 57 3 41 135 1 94 7.52e-13 62.0
Msa1146420 MtrunA17_Chr1g0154171 31.579 95 64 1 11 105 21 114 9.28e-13 64.3
Msa1146420 MtrunA17_Chr1g0154041 32.673 101 67 1 8 108 11 110 1.63e-12 63.9
Msa1146420 MtrunA17_Chr1g0154131 31.959 97 64 1 11 107 182 276 3.45e-12 63.2
Msa1146420 MtrunA17_Chr1g0154241 29.897 97 67 1 11 107 20 115 1.87e-11 60.5
Msa1146420 MtrunA17_Chr1g0154191 30.108 93 65 0 11 103 20 112 2.64e-11 60.5
Msa1146420 MtrunA17_Chr1g0154151 34.667 75 49 0 29 103 20 94 4.36e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1146420 AT1G49475.1 41.739 115 66 1 6 120 27 140 3.26e-25 95.9
Msa1146420 AT3G18990.1 45.098 102 56 0 13 114 6 107 7.38e-25 98.2
Msa1146420 AT3G18990.2 45.098 102 56 0 13 114 6 107 1.16e-24 97.8
Msa1146420 AT4G01580.1 40.187 107 64 0 6 112 23 129 1.50e-23 91.7
Msa1146420 AT3G18960.1 38.739 111 68 0 2 112 19 129 5.73e-23 90.5
Msa1146420 AT3G18960.2 38.739 111 68 0 2 112 19 129 6.32e-23 90.1
Msa1146420 AT3G18960.3 43.182 88 50 0 29 116 9 96 6.19e-19 79.0
Msa1146420 AT3G53310.1 32.258 93 62 1 12 104 10 101 2.64e-11 60.5
Msa1146420 AT4G33280.2 33.333 102 61 3 9 107 21 118 3.54e-11 60.1
Msa1146420 AT4G33280.3 33.333 102 61 3 9 107 21 118 4.44e-11 60.1
Msa1146420 AT4G33280.1 33.333 102 61 3 9 107 21 118 6.97e-11 59.3

Find 30 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTACAATCCTCATTATT+TGG 0.147186 7_4:+24022647 None:intergenic
TGCAAAATGGACATTAAATT+TGG 0.181659 7_4:-24022879 Msa1146420:CDS
CCACAAGAGTTGAAGCTAAA+AGG 0.209640 7_4:-24022697 Msa1146420:CDS
TATTTCTCCACAAACTTTCT+TGG 0.217927 7_4:+24022947 None:intergenic
ATTTGGAGTCTTTAGATATA+TGG 0.264588 7_4:+24022904 None:intergenic
AGAAAGTTTGTGGAGAAATA+TGG 0.293086 7_4:-24022944 Msa1146420:CDS
TTTCATCAACCACATGAAAT+AGG 0.315408 7_4:-24022588 None:intergenic
AGACTCCAAATGGTGCAAAA+TGG 0.339005 7_4:-24022892 Msa1146420:CDS
GGAAGGGTAACTTATCTCTA+AGG 0.432576 7_4:+24022718 None:intergenic
TGGCAAGATATGGTTTGAAA+AGG 0.433004 7_4:-24022846 Msa1146420:CDS
CACAAGAGTTGAAGCTAAAA+GGG 0.438433 7_4:-24022696 Msa1146420:CDS
GATGATGCCAAGAAAGTTTG+TGG 0.445895 7_4:-24022954 Msa1146420:CDS
CATATTTGAAAAGCAGAAGA+TGG 0.450028 7_4:+24022783 None:intergenic
AGATATGGTTTGAAAAGGGT+TGG 0.475702 7_4:-24022841 Msa1146420:CDS
CTTCACCTCAGGAATTTCAC+TGG 0.477594 7_4:+24024514 None:intergenic
ATATATCTAAAGACTCCAAA+TGG 0.497009 7_4:-24022902 Msa1146420:CDS
TTAGCTTCAACTCTTGTGGA+AGG 0.514301 7_4:+24022701 None:intergenic
GGCAAGATATGGTTTGAAAA+GGG 0.522590 7_4:-24022845 Msa1146420:CDS
AAGTGGATTGACTTCACCTC+AGG 0.534487 7_4:+24024503 None:intergenic
GGTTGATGAAATTCAAATGA+GGG 0.554318 7_4:+24022600 None:intergenic
CTATAAATCTCCAAATAATG+AGG 0.558294 7_4:-24022657 Msa1146420:CDS
TAGCTTCAACTCTTGTGGAA+GGG 0.568047 7_4:+24022702 None:intergenic
CTTACTCACAACATTCATGA+AGG 0.573729 7_4:-24024467 Msa1146420:CDS
TTTGTGGAGAAATATGGAGA+AGG 0.578281 7_4:-24022938 Msa1146420:CDS
CTACTGCTTCCTATTTCATG+TGG 0.590187 7_4:+24022579 None:intergenic
CAGCATCACTCACTAGCTCA+TGG 0.601771 7_4:-24022806 Msa1146420:CDS
TGGTTGATGAAATTCAAATG+AGG 0.612311 7_4:+24022599 None:intergenic
GAAGCTAAAAGGGTCTCGAA+TGG 0.643697 7_4:-24022686 Msa1146420:CDS
GTTGATGAAATTCAAATGAG+GGG 0.661864 7_4:+24022601 None:intergenic
CATGGCCAGTGAAATTCCTG+AGG 0.703012 7_4:-24024519 Msa1146420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTAATTTATGATTTTCT+TGG - chr7_4:24023227-24023246 Msa1146420:intron 10.0%
!!! TATTAATTTATGATTTTCTT+GGG - chr7_4:24023228-24023247 Msa1146420:intron 10.0%
!!! TTATTAATTTATGATTTTCT+TGG - chr7_4:24023227-24023246 Msa1146420:intron 10.0%
!!! TATTAATTTATGATTTTCTT+GGG - chr7_4:24023228-24023247 Msa1146420:intron 10.0%
!! TGTTTCTTTATCTTATAAAA+TGG - chr7_4:24022708-24022727 Msa1146420:CDS 15.0%
!! ACTCTATAAATTAATAATGT+TGG - chr7_4:24022915-24022934 Msa1146420:CDS 15.0%
!! CTCTATAAATTAATAATGTT+GGG - chr7_4:24022916-24022935 Msa1146420:CDS 15.0%
!! TCTAAATTAATAAATTTCTC+CGG + chr7_4:24022943-24022962 None:intergenic 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG - chr7_4:24023304-24023323 Msa1146420:intron 15.0%
!!! TCTAAAATAATAAATTTGTC+CGG + chr7_4:24023342-24023361 None:intergenic 15.0%
!!! ATTCAATTGTTAATTTGTTA+TGG + chr7_4:24023814-24023833 None:intergenic 15.0%
!! TGTTTCTTTATCTTATAAAA+TGG - chr7_4:24022708-24022727 Msa1146420:CDS 15.0%
!! ACTCTATAAATTAATAATGT+TGG - chr7_4:24022915-24022934 Msa1146420:CDS 15.0%
!! CTCTATAAATTAATAATGTT+GGG - chr7_4:24022916-24022935 Msa1146420:CDS 15.0%
!! TCTAAATTAATAAATTTCTC+CGG + chr7_4:24022943-24022962 None:intergenic 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG - chr7_4:24023304-24023323 Msa1146420:intron 15.0%
!!! TCTAAAATAATAAATTTGTC+CGG + chr7_4:24023342-24023361 None:intergenic 15.0%
!!! ATTCAATTGTTAATTTGTTA+TGG + chr7_4:24023814-24023833 None:intergenic 15.0%
!!! ATAGAGTTTTAACTGTATTT+AGG + chr7_4:24022902-24022921 None:intergenic 20.0%
!!! GACTAATTTGTTTTTTTGTT+TGG + chr7_4:24023035-24023054 None:intergenic 20.0%
!! AAACTCTTTGAATTAATACT+CGG + chr7_4:24023380-24023399 None:intergenic 20.0%
!!! GTTAATTTGTTATGGTATTT+GGG + chr7_4:24023806-24023825 None:intergenic 20.0%
!!! TGTTAATTTGTTATGGTATT+TGG + chr7_4:24023807-24023826 None:intergenic 20.0%
!! TTAAATTTGGTAAAAAGTGA+TGG - chr7_4:24024241-24024260 Msa1146420:intron 20.0%
!!! ATAGAGTTTTAACTGTATTT+AGG + chr7_4:24022902-24022921 None:intergenic 20.0%
!!! GACTAATTTGTTTTTTTGTT+TGG + chr7_4:24023035-24023054 None:intergenic 20.0%
!! AAACTCTTTGAATTAATACT+CGG + chr7_4:24023380-24023399 None:intergenic 20.0%
!!! GTTAATTTGTTATGGTATTT+GGG + chr7_4:24023806-24023825 None:intergenic 20.0%
!!! TGTTAATTTGTTATGGTATT+TGG + chr7_4:24023807-24023826 None:intergenic 20.0%
!! TTAAATTTGGTAAAAAGTGA+TGG - chr7_4:24024241-24024260 Msa1146420:intron 20.0%
! TAAGTATGATCTTGAAAAAG+TGG + chr7_4:24022624-24022643 None:intergenic 25.0%
! TTTGTTTGTTTGAAGAAAAC+AGG - chr7_4:24022744-24022763 Msa1146420:CDS 25.0%
! CATATGACGTAATATATGAA+GGG - chr7_4:24022809-24022828 Msa1146420:CDS 25.0%
! TAAATTAATAATGTTGGGAC+CGG - chr7_4:24022921-24022940 Msa1146420:CDS 25.0%
!! GAAGATCCCTTTATAATTTT+CGG + chr7_4:24023255-24023274 None:intergenic 25.0%
!!! TGGGATTTTTTTTTTCTTGT+TGG - chr7_4:24023440-24023459 Msa1146420:intron 25.0%
!!! GGGATTTTTTTTTTCTTGTT+GGG - chr7_4:24023441-24023460 Msa1146420:intron 25.0%
!!! GGATTTTTTTTTTCTTGTTG+GGG - chr7_4:24023442-24023461 Msa1146420:intron 25.0%
!!! CGATTCGGTAAAAATTAAAT+TGG - chr7_4:24023630-24023649 Msa1146420:intron 25.0%
! TTGTGCTGTAAAAAAAGATA+TGG + chr7_4:24024054-24024073 None:intergenic 25.0%
!! ATTTGGAGTCTTTAGATATA+TGG + chr7_4:24024206-24024225 None:intergenic 25.0%
! ATATATCTAAAGACTCCAAA+TGG - chr7_4:24024205-24024224 Msa1146420:intron 25.0%
! TGCAAAATGGACATTAAATT+TGG - chr7_4:24024228-24024247 Msa1146420:intron 25.0%
! AAAAACGTGCACATAAAAAT+GGG + chr7_4:24024359-24024378 None:intergenic 25.0%
! CTATAAATCTCCAAATAATG+AGG - chr7_4:24024450-24024469 Msa1146420:intron 25.0%
! TAAGTATGATCTTGAAAAAG+TGG + chr7_4:24022624-24022643 None:intergenic 25.0%
! TTTGTTTGTTTGAAGAAAAC+AGG - chr7_4:24022744-24022763 Msa1146420:CDS 25.0%
! CATATGACGTAATATATGAA+GGG - chr7_4:24022809-24022828 Msa1146420:CDS 25.0%
! TAAATTAATAATGTTGGGAC+CGG - chr7_4:24022921-24022940 Msa1146420:CDS 25.0%
!! GAAGATCCCTTTATAATTTT+CGG + chr7_4:24023255-24023274 None:intergenic 25.0%
!!! TGGGATTTTTTTTTTCTTGT+TGG - chr7_4:24023440-24023459 Msa1146420:intron 25.0%
!!! GGGATTTTTTTTTTCTTGTT+GGG - chr7_4:24023441-24023460 Msa1146420:intron 25.0%
!!! GGATTTTTTTTTTCTTGTTG+GGG - chr7_4:24023442-24023461 Msa1146420:intron 25.0%
!!! CGATTCGGTAAAAATTAAAT+TGG - chr7_4:24023630-24023649 Msa1146420:intron 25.0%
! TTGTGCTGTAAAAAAAGATA+TGG + chr7_4:24024054-24024073 None:intergenic 25.0%
!! ATTTGGAGTCTTTAGATATA+TGG + chr7_4:24024206-24024225 None:intergenic 25.0%
! ATATATCTAAAGACTCCAAA+TGG - chr7_4:24024205-24024224 Msa1146420:intron 25.0%
! TGCAAAATGGACATTAAATT+TGG - chr7_4:24024228-24024247 Msa1146420:intron 25.0%
! AAAAACGTGCACATAAAAAT+GGG + chr7_4:24024359-24024378 None:intergenic 25.0%
! CTATAAATCTCCAAATAATG+AGG - chr7_4:24024450-24024469 Msa1146420:intron 25.0%
CCTTCATATATTACGTCATA+TGG + chr7_4:24022811-24022830 None:intergenic 30.0%
CCATATGACGTAATATATGA+AGG - chr7_4:24022808-24022827 Msa1146420:CDS 30.0%
TAATGTGTTCATCTGTTAGA+TGG + chr7_4:24022855-24022874 None:intergenic 30.0%
GTACAGTAAATGTAAACAAG+AGG - chr7_4:24023153-24023172 Msa1146420:intron 30.0%
TTGGGACCGAAAATTATAAA+GGG - chr7_4:24023246-24023265 Msa1146420:intron 30.0%
TAAACACAAAACTGACAGAT+TGG - chr7_4:24023420-24023439 Msa1146420:intron 30.0%
AAACACAAAACTGACAGATT+GGG - chr7_4:24023421-24023440 Msa1146420:intron 30.0%
! TTTTCTTGTTGGGGTTTATA+AGG - chr7_4:24023451-24023470 Msa1146420:intron 30.0%
AATCGAGCATAACTTAATCT+CGG + chr7_4:24023615-24023634 None:intergenic 30.0%
AGATTAAGTTATGCTCGATT+CGG - chr7_4:24023615-24023634 Msa1146420:intron 30.0%
TAACAATTGAATCATGCGAT+AGG - chr7_4:24023822-24023841 Msa1146420:intron 30.0%
TAAACAATTGAGAGCTAGAT+TGG + chr7_4:24023921-24023940 None:intergenic 30.0%
TTGTTTAAAAAATACCGTCG+TGG - chr7_4:24023934-24023953 Msa1146420:intron 30.0%
TGTTTAAAAAATACCGTCGT+GGG - chr7_4:24023935-24023954 Msa1146420:intron 30.0%
ATTCTCATATAGTGGTTTCA+TGG - chr7_4:24023961-24023980 Msa1146420:intron 30.0%
!!! TCGTATCTCTTTTAGTTTGA+AGG - chr7_4:24024028-24024047 Msa1146420:intron 30.0%
TTCTATCACGAGTACTAATT+TGG - chr7_4:24024115-24024134 Msa1146420:intron 30.0%
TATTTCTCCACAAACTTTCT+TGG + chr7_4:24024163-24024182 None:intergenic 30.0%
AGAAAGTTTGTGGAGAAATA+TGG - chr7_4:24024163-24024182 Msa1146420:intron 30.0%
TAAAAAGTGATGGCAAGATA+TGG - chr7_4:24024251-24024270 Msa1146420:intron 30.0%
CATATTTGAAAAGCAGAAGA+TGG + chr7_4:24024327-24024346 None:intergenic 30.0%
CAAAAACGTGCACATAAAAA+TGG + chr7_4:24024360-24024379 None:intergenic 30.0%
! GTTGATGAAATTCAAATGAG+GGG + chr7_4:24024509-24024528 None:intergenic 30.0%
!! GGTTGATGAAATTCAAATGA+GGG + chr7_4:24024510-24024529 None:intergenic 30.0%
!! TGGTTGATGAAATTCAAATG+AGG + chr7_4:24024511-24024530 None:intergenic 30.0%
CCTTCATATATTACGTCATA+TGG + chr7_4:24022811-24022830 None:intergenic 30.0%
CCATATGACGTAATATATGA+AGG - chr7_4:24022808-24022827 Msa1146420:CDS 30.0%
TAATGTGTTCATCTGTTAGA+TGG + chr7_4:24022855-24022874 None:intergenic 30.0%
GTACAGTAAATGTAAACAAG+AGG - chr7_4:24023153-24023172 Msa1146420:intron 30.0%
TTGGGACCGAAAATTATAAA+GGG - chr7_4:24023246-24023265 Msa1146420:intron 30.0%
TAAACACAAAACTGACAGAT+TGG - chr7_4:24023420-24023439 Msa1146420:intron 30.0%
AAACACAAAACTGACAGATT+GGG - chr7_4:24023421-24023440 Msa1146420:intron 30.0%
! TTTTCTTGTTGGGGTTTATA+AGG - chr7_4:24023451-24023470 Msa1146420:intron 30.0%
AATCGAGCATAACTTAATCT+CGG + chr7_4:24023615-24023634 None:intergenic 30.0%
AGATTAAGTTATGCTCGATT+CGG - chr7_4:24023615-24023634 Msa1146420:intron 30.0%
TAACAATTGAATCATGCGAT+AGG - chr7_4:24023822-24023841 Msa1146420:intron 30.0%
TAAACAATTGAGAGCTAGAT+TGG + chr7_4:24023921-24023940 None:intergenic 30.0%
TTGTTTAAAAAATACCGTCG+TGG - chr7_4:24023934-24023953 Msa1146420:intron 30.0%
TGTTTAAAAAATACCGTCGT+GGG - chr7_4:24023935-24023954 Msa1146420:intron 30.0%
ATTCTCATATAGTGGTTTCA+TGG - chr7_4:24023961-24023980 Msa1146420:intron 30.0%
!!! TCGTATCTCTTTTAGTTTGA+AGG - chr7_4:24024028-24024047 Msa1146420:intron 30.0%
TTCTATCACGAGTACTAATT+TGG - chr7_4:24024115-24024134 Msa1146420:intron 30.0%
TATTTCTCCACAAACTTTCT+TGG + chr7_4:24024163-24024182 None:intergenic 30.0%
AGAAAGTTTGTGGAGAAATA+TGG - chr7_4:24024163-24024182 Msa1146420:intron 30.0%
TAAAAAGTGATGGCAAGATA+TGG - chr7_4:24024251-24024270 Msa1146420:intron 30.0%
CATATTTGAAAAGCAGAAGA+TGG + chr7_4:24024327-24024346 None:intergenic 30.0%
CAAAAACGTGCACATAAAAA+TGG + chr7_4:24024360-24024379 None:intergenic 30.0%
! GTTGATGAAATTCAAATGAG+GGG + chr7_4:24024509-24024528 None:intergenic 30.0%
!! GGTTGATGAAATTCAAATGA+GGG + chr7_4:24024510-24024529 None:intergenic 30.0%
!! TGGTTGATGAAATTCAAATG+AGG + chr7_4:24024511-24024530 None:intergenic 30.0%
CTTACTCACAACATTCATGA+AGG - chr7_4:24022640-24022659 Msa1146420:CDS 35.0%
ACTACTGTGTTCATATGCAT+TGG - chr7_4:24023109-24023128 Msa1146420:intron 35.0%
CTTGGGACCGAAAATTATAA+AGG - chr7_4:24023245-24023264 Msa1146420:intron 35.0%
ATAATAAATTTGTCCGGTCC+CGG + chr7_4:24023336-24023355 None:intergenic 35.0%
TATGAGCAACATACAAGTAG+TGG - chr7_4:24023488-24023507 Msa1146420:intron 35.0%
TTACCTTATCCTCTTAGGTT+GGG - chr7_4:24023556-24023575 Msa1146420:intron 35.0%
AGCTCACAAACAATTCGATT+CGG - chr7_4:24023703-24023722 Msa1146420:intron 35.0%
GTTAAAAGTCTCACATCGTT+TGG - chr7_4:24024092-24024111 Msa1146420:intron 35.0%
TTTGTGGAGAAATATGGAGA+AGG - chr7_4:24024169-24024188 Msa1146420:intron 35.0%
! AATGTCCATTTTGCACCATT+TGG + chr7_4:24024223-24024242 None:intergenic 35.0%
TGGCAAGATATGGTTTGAAA+AGG - chr7_4:24024261-24024280 Msa1146420:intron 35.0%
GGCAAGATATGGTTTGAAAA+GGG - chr7_4:24024262-24024281 Msa1146420:intron 35.0%
AGATATGGTTTGAAAAGGGT+TGG - chr7_4:24024266-24024285 Msa1146420:intron 35.0%
CACAAGAGTTGAAGCTAAAA+GGG - chr7_4:24024411-24024430 Msa1146420:intron 35.0%
GCTCTACAATCCTCATTATT+TGG + chr7_4:24024463-24024482 None:intergenic 35.0%
CTTACTCACAACATTCATGA+AGG - chr7_4:24022640-24022659 Msa1146420:CDS 35.0%
ACTACTGTGTTCATATGCAT+TGG - chr7_4:24023109-24023128 Msa1146420:intron 35.0%
CTTGGGACCGAAAATTATAA+AGG - chr7_4:24023245-24023264 Msa1146420:intron 35.0%
ATAATAAATTTGTCCGGTCC+CGG + chr7_4:24023336-24023355 None:intergenic 35.0%
TATGAGCAACATACAAGTAG+TGG - chr7_4:24023488-24023507 Msa1146420:intron 35.0%
TTACCTTATCCTCTTAGGTT+GGG - chr7_4:24023556-24023575 Msa1146420:intron 35.0%
AGCTCACAAACAATTCGATT+CGG - chr7_4:24023703-24023722 Msa1146420:intron 35.0%
GTTAAAAGTCTCACATCGTT+TGG - chr7_4:24024092-24024111 Msa1146420:intron 35.0%
TTTGTGGAGAAATATGGAGA+AGG - chr7_4:24024169-24024188 Msa1146420:intron 35.0%
! AATGTCCATTTTGCACCATT+TGG + chr7_4:24024223-24024242 None:intergenic 35.0%
TGGCAAGATATGGTTTGAAA+AGG - chr7_4:24024261-24024280 Msa1146420:intron 35.0%
GGCAAGATATGGTTTGAAAA+GGG - chr7_4:24024262-24024281 Msa1146420:intron 35.0%
AGATATGGTTTGAAAAGGGT+TGG - chr7_4:24024266-24024285 Msa1146420:intron 35.0%
CACAAGAGTTGAAGCTAAAA+GGG - chr7_4:24024411-24024430 Msa1146420:intron 35.0%
GCTCTACAATCCTCATTATT+TGG + chr7_4:24024463-24024482 None:intergenic 35.0%
CTAATTTACGTTGAGTCCCA+AGG + chr7_4:24023087-24023106 None:intergenic 40.0%
!!! TTTTTTACATTGGCCCAAGC+CGG - chr7_4:24023314-24023333 Msa1146420:intron 40.0%
CATACAAGTAGTGGCGAAAA+AGG - chr7_4:24023497-24023516 Msa1146420:intron 40.0%
CTACCTTACCTTATCCTCTT+AGG - chr7_4:24023551-24023570 Msa1146420:intron 40.0%
CAACCTAAGAGGATAAGGTA+AGG + chr7_4:24023557-24023576 None:intergenic 40.0%
CTTACCTTATCCTCTTAGGT+TGG - chr7_4:24023555-24023574 Msa1146420:intron 40.0%
CGATAGGCTGAGAACAAATT+TGG - chr7_4:24023838-24023857 Msa1146420:intron 40.0%
! TGGTCTTAAGACCAAGTAAC+AGG - chr7_4:24023858-24023877 Msa1146420:intron 40.0%
ATATGAGAATAGTCCCACGA+CGG + chr7_4:24023951-24023970 None:intergenic 40.0%
GTGGGACTATTCTCATATAG+TGG - chr7_4:24023953-24023972 Msa1146420:intron 40.0%
GATGATGCCAAGAAAGTTTG+TGG - chr7_4:24024153-24024172 Msa1146420:intron 40.0%
AGACTCCAAATGGTGCAAAA+TGG - chr7_4:24024215-24024234 Msa1146420:intron 40.0%
GGAAGGGTAACTTATCTCTA+AGG + chr7_4:24024392-24024411 None:intergenic 40.0%
TAGCTTCAACTCTTGTGGAA+GGG + chr7_4:24024408-24024427 None:intergenic 40.0%
TTAGCTTCAACTCTTGTGGA+AGG + chr7_4:24024409-24024428 None:intergenic 40.0%
!!! CCTTTTAGCTTCAACTCTTG+TGG + chr7_4:24024413-24024432 None:intergenic 40.0%
CCACAAGAGTTGAAGCTAAA+AGG - chr7_4:24024410-24024429 Msa1146420:intron 40.0%
CTAATTTACGTTGAGTCCCA+AGG + chr7_4:24023087-24023106 None:intergenic 40.0%
!!! TTTTTTACATTGGCCCAAGC+CGG - chr7_4:24023314-24023333 Msa1146420:intron 40.0%
CATACAAGTAGTGGCGAAAA+AGG - chr7_4:24023497-24023516 Msa1146420:intron 40.0%
CTACCTTACCTTATCCTCTT+AGG - chr7_4:24023551-24023570 Msa1146420:intron 40.0%
CAACCTAAGAGGATAAGGTA+AGG + chr7_4:24023557-24023576 None:intergenic 40.0%
CTTACCTTATCCTCTTAGGT+TGG - chr7_4:24023555-24023574 Msa1146420:intron 40.0%
CGATAGGCTGAGAACAAATT+TGG - chr7_4:24023838-24023857 Msa1146420:intron 40.0%
! TGGTCTTAAGACCAAGTAAC+AGG - chr7_4:24023858-24023877 Msa1146420:intron 40.0%
ATATGAGAATAGTCCCACGA+CGG + chr7_4:24023951-24023970 None:intergenic 40.0%
GTGGGACTATTCTCATATAG+TGG - chr7_4:24023953-24023972 Msa1146420:intron 40.0%
GATGATGCCAAGAAAGTTTG+TGG - chr7_4:24024153-24024172 Msa1146420:intron 40.0%
AGACTCCAAATGGTGCAAAA+TGG - chr7_4:24024215-24024234 Msa1146420:intron 40.0%
GGAAGGGTAACTTATCTCTA+AGG + chr7_4:24024392-24024411 None:intergenic 40.0%
TAGCTTCAACTCTTGTGGAA+GGG + chr7_4:24024408-24024427 None:intergenic 40.0%
TTAGCTTCAACTCTTGTGGA+AGG + chr7_4:24024409-24024428 None:intergenic 40.0%
!!! CCTTTTAGCTTCAACTCTTG+TGG + chr7_4:24024413-24024432 None:intergenic 40.0%
CCACAAGAGTTGAAGCTAAA+AGG - chr7_4:24024410-24024429 Msa1146420:intron 40.0%
CTTCACCTCAGGAATTTCAC+TGG + chr7_4:24022596-24022615 None:intergenic 45.0%
!! AAGTGGATTGACTTCACCTC+AGG + chr7_4:24022607-24022626 None:intergenic 45.0%
AATTACGTTGCAGCGAACCT+TGG - chr7_4:24023067-24023086 Msa1146420:intron 45.0%
ATTACGTTGCAGCGAACCTT+GGG - chr7_4:24023068-24023087 Msa1146420:intron 45.0%
! TTTTTACATTGGCCCAAGCC+GGG - chr7_4:24023315-24023334 Msa1146420:intron 45.0%
AAGCCCAACCTAAGAGGATA+AGG + chr7_4:24023562-24023581 None:intergenic 45.0%
!! TATCCTCTTAGGTTGGGCTT+AGG - chr7_4:24023562-24023581 Msa1146420:intron 45.0%
!! ATCCTCTTAGGTTGGGCTTA+GGG - chr7_4:24023563-24023582 Msa1146420:intron 45.0%
CCAATGCATTGCCTGTTACT+TGG + chr7_4:24023872-24023891 None:intergenic 45.0%
CCAAGTAACAGGCAATGCAT+TGG - chr7_4:24023869-24023888 Msa1146420:intron 45.0%
GAAGCTAAAAGGGTCTCGAA+TGG - chr7_4:24024421-24024440 Msa1146420:intron 45.0%
CTTCACCTCAGGAATTTCAC+TGG + chr7_4:24022596-24022615 None:intergenic 45.0%
!! AAGTGGATTGACTTCACCTC+AGG + chr7_4:24022607-24022626 None:intergenic 45.0%
AATTACGTTGCAGCGAACCT+TGG - chr7_4:24023067-24023086 Msa1146420:intron 45.0%
ATTACGTTGCAGCGAACCTT+GGG - chr7_4:24023068-24023087 Msa1146420:intron 45.0%
! TTTTTACATTGGCCCAAGCC+GGG - chr7_4:24023315-24023334 Msa1146420:intron 45.0%
AAGCCCAACCTAAGAGGATA+AGG + chr7_4:24023562-24023581 None:intergenic 45.0%
!! TATCCTCTTAGGTTGGGCTT+AGG - chr7_4:24023562-24023581 Msa1146420:intron 45.0%
!! ATCCTCTTAGGTTGGGCTTA+GGG - chr7_4:24023563-24023582 Msa1146420:intron 45.0%
CCAATGCATTGCCTGTTACT+TGG + chr7_4:24023872-24023891 None:intergenic 45.0%
CCAAGTAACAGGCAATGCAT+TGG - chr7_4:24023869-24023888 Msa1146420:intron 45.0%
GAAGCTAAAAGGGTCTCGAA+TGG - chr7_4:24024421-24024440 Msa1146420:intron 45.0%
!!! ATAATAAGATAATAATTTTT+CGG + chr7_4:24023277-24023296 None:intergenic 5.0%
!!! ATAATAAGATAATAATTTTT+CGG + chr7_4:24023277-24023296 None:intergenic 5.0%
CAGCATCACTCACTAGCTCA+TGG - chr7_4:24024301-24024320 Msa1146420:intron 50.0%
CAGCATCACTCACTAGCTCA+TGG - chr7_4:24024301-24024320 Msa1146420:intron 50.0%
AATTTGTCCGGTCCCGGCTT+GGG + chr7_4:24023330-24023349 None:intergenic 55.0%
AAATTTGTCCGGTCCCGGCT+TGG + chr7_4:24023331-24023350 None:intergenic 55.0%
GACCCTAAGCCCAACCTAAG+AGG + chr7_4:24023568-24023587 None:intergenic 55.0%
AATTTGTCCGGTCCCGGCTT+GGG + chr7_4:24023330-24023349 None:intergenic 55.0%
AAATTTGTCCGGTCCCGGCT+TGG + chr7_4:24023331-24023350 None:intergenic 55.0%
GACCCTAAGCCCAACCTAAG+AGG + chr7_4:24023568-24023587 None:intergenic 55.0%
ACATTGGCCCAAGCCGGGAC+CGG - chr7_4:24023320-24023339 Msa1146420:intron 65.0%
ACATTGGCCCAAGCCGGGAC+CGG - chr7_4:24023320-24023339 Msa1146420:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 24022589 24024540 24022589 ID=Msa1146420;Name=Msa1146420
chr7_4 mRNA 24022589 24024540 24022589 ID=Msa1146420-mRNA-1;Parent=Msa1146420;Name=Msa1146420-mRNA-1;_AED=0.53;_eAED=0.55;_QI=0|0|0|0.5|1|1|2|0|155
chr7_4 exon 24024460 24024540 24024460 ID=Msa1146420-mRNA-1:exon:6017;Parent=Msa1146420-mRNA-1
chr7_4 exon 24022589 24022975 24022589 ID=Msa1146420-mRNA-1:exon:6016;Parent=Msa1146420-mRNA-1
chr7_4 CDS 24024460 24024540 24024460 ID=Msa1146420-mRNA-1:cds;Parent=Msa1146420-mRNA-1
chr7_4 CDS 24022589 24022975 24022589 ID=Msa1146420-mRNA-1:cds;Parent=Msa1146420-mRNA-1
Gene Sequence

>Msa1146420

ATGGCCAGTGAAATTCCTGAGGTGAAGTCAATCCACTTTTTCAAGATCATACTTACTCACAACATTCATGAAGGAAAGCTTATGATGCCAAGAAAGTTTGTGGAGAAATATGGAGAAGGTTTATCAAATGCCATATATCTAAAGACTCCAAATGGTGCAAAATGGACATTAAATTTGGTAAAAAGTGATGGCAAGATATGGTTTGAAAAGGGTTGGAAAGAATTTGCACAGCATCACTCACTAGCTCATGGCCATCTTCTGCTTTTCAAATATGAAAGAACATCCCATTTTTATGTGCACGTTTTTGAAAAGAGTGCCTTAGAGATAAGTTACCCTTCCACAAGAGTTGAAGCTAAAAGGGTCTCGAATGGTCAAAGCTATAAATCTCCAAATAATGAGGATTGTAGAGCATGTCAAAAGAGAGAAAAGCTAACCCCTCATTTGAATTTCATCAACCACATGAAATAG

Protein sequence

>Msa1146420

MASEIPEVKSIHFFKIILTHNIHEGKLMMPRKFVEKYGEGLSNAIYLKTPNGAKWTLNLVKSDGKIWFEKGWKEFAQHHSLAHGHLLLFKYERTSHFYVHVFEKSALEISYPSTRVEAKRVSNGQSYKSPNNEDCRACQKREKLTPHLNFINHMK*