Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1146420 | XP_003622666.4 | 80.556 | 144 | 26 | 1 | 1 | 142 | 1 | 144 | 1.21e-75 | 238 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1146420 | sp|Q9XIB4|Y1475_ARATH | 41.739 | 115 | 66 | 1 | 6 | 120 | 27 | 140 | 3.21e-24 | 95.9 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1146420 | G7KVV6 | 74.648 | 142 | 36 | 0 | 1 | 142 | 1 | 142 | 1.56e-71 | 227 |
Gene ID | Type | Classification |
---|---|---|
Msa1146420 | TF | B3 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1146420 | MtrunA17_Chr3g0131891 | 74.648 | 142 | 36 | 0 | 1 | 142 | 7 | 148 | 3.84e-74 | 224 |
Msa1146420 | MtrunA17_Chr7g0233561 | 71.831 | 142 | 40 | 0 | 1 | 142 | 6 | 147 | 2.03e-71 | 218 |
Msa1146420 | MtrunA17_Chr7g0233571 | 68.000 | 150 | 45 | 1 | 1 | 150 | 1 | 147 | 2.57e-69 | 209 |
Msa1146420 | MtrunA17_Chr7g0233541 | 81.197 | 117 | 20 | 1 | 28 | 142 | 1 | 117 | 9.61e-63 | 194 |
Msa1146420 | MtrunA17_Chr7g0233531 | 73.913 | 115 | 30 | 0 | 28 | 142 | 1 | 115 | 1.48e-58 | 183 |
Msa1146420 | MtrunA17_Chr7g0233521 | 81.373 | 102 | 19 | 0 | 28 | 129 | 1 | 102 | 3.21e-55 | 174 |
Msa1146420 | MtrunA17_Chr8g0390841 | 53.465 | 101 | 47 | 0 | 11 | 111 | 37 | 137 | 2.91e-35 | 127 |
Msa1146420 | MtrunA17_Chr5g0419201 | 44.348 | 115 | 61 | 1 | 9 | 120 | 12 | 126 | 4.35e-32 | 113 |
Msa1146420 | MtrunA17_Chr3g0103191 | 50.485 | 103 | 49 | 1 | 11 | 113 | 10 | 110 | 4.68e-32 | 114 |
Msa1146420 | MtrunA17_Chr3g0103151 | 49.038 | 104 | 51 | 1 | 11 | 114 | 10 | 111 | 4.79e-31 | 109 |
Msa1146420 | MtrunA17_Chr1g0163071 | 52.941 | 85 | 40 | 0 | 28 | 112 | 1 | 85 | 1.68e-29 | 109 |
Msa1146420 | MtrunA17_Chr3g0103181 | 48.077 | 104 | 52 | 1 | 11 | 114 | 10 | 111 | 9.04e-29 | 106 |
Msa1146420 | MtrunA17_Chr1g0208771 | 53.012 | 83 | 39 | 0 | 29 | 111 | 13 | 95 | 7.07e-28 | 107 |
Msa1146420 | MtrunA17_Chr6g0467351 | 40.000 | 145 | 76 | 4 | 11 | 146 | 13 | 155 | 1.97e-24 | 94.4 |
Msa1146420 | MtrunA17_Chr3g0103171 | 46.512 | 86 | 46 | 0 | 29 | 114 | 6 | 91 | 1.52e-23 | 92.8 |
Msa1146420 | MtrunA17_Chr4g0033961 | 40.385 | 104 | 62 | 0 | 10 | 113 | 3 | 106 | 1.93e-23 | 94.7 |
Msa1146420 | MtrunA17_Chr1g0163101 | 34.752 | 141 | 87 | 3 | 9 | 147 | 13 | 150 | 2.06e-23 | 90.5 |
Msa1146420 | MtrunA17_Chr1g0162441 | 38.596 | 114 | 67 | 1 | 13 | 123 | 7 | 120 | 4.31e-23 | 94.0 |
Msa1146420 | MtrunA17_Chr4g0067431 | 45.631 | 103 | 55 | 1 | 11 | 112 | 13 | 115 | 2.21e-22 | 90.9 |
Msa1146420 | MtrunA17_Chr1g0163251 | 45.192 | 104 | 51 | 2 | 12 | 115 | 8 | 105 | 7.20e-22 | 90.1 |
Msa1146420 | MtrunA17_Chr1g0171611 | 41.748 | 103 | 58 | 1 | 13 | 115 | 9 | 109 | 1.07e-21 | 88.6 |
Msa1146420 | MtrunA17_Chr1g0163131 | 36.434 | 129 | 79 | 2 | 7 | 135 | 12 | 137 | 1.09e-21 | 88.6 |
Msa1146420 | MtrunA17_Chr1g0163191 | 42.308 | 104 | 54 | 2 | 12 | 115 | 8 | 105 | 7.60e-21 | 83.2 |
Msa1146420 | MtrunA17_Chr1g0163181 | 38.525 | 122 | 72 | 2 | 22 | 142 | 14 | 133 | 1.08e-20 | 87.0 |
Msa1146420 | MtrunA17_Chr3g0077411 | 34.167 | 120 | 75 | 1 | 7 | 126 | 19 | 134 | 1.81e-20 | 86.7 |
Msa1146420 | MtrunA17_Chr3g0077411 | 36.190 | 105 | 66 | 1 | 9 | 112 | 258 | 362 | 2.15e-20 | 86.7 |
Msa1146420 | MtrunA17_Chr1g0163231 | 39.806 | 103 | 60 | 1 | 13 | 115 | 9 | 109 | 1.94e-20 | 85.1 |
Msa1146420 | MtrunA17_Chr3g0077461 | 38.462 | 104 | 64 | 0 | 9 | 112 | 233 | 336 | 2.46e-20 | 86.3 |
Msa1146420 | MtrunA17_Chr3g0077461 | 35.714 | 84 | 54 | 0 | 29 | 112 | 23 | 106 | 1.67e-17 | 78.2 |
Msa1146420 | MtrunA17_Chr1g0163121 | 48.315 | 89 | 43 | 2 | 27 | 115 | 9 | 94 | 4.14e-20 | 80.9 |
Msa1146420 | MtrunA17_Chr3g0077381 | 33.333 | 111 | 71 | 1 | 27 | 137 | 34 | 141 | 1.77e-19 | 84.0 |
Msa1146420 | MtrunA17_Chr3g0077381 | 35.577 | 104 | 67 | 0 | 9 | 112 | 243 | 346 | 8.27e-16 | 73.6 |
Msa1146420 | MtrunA17_Chr1g0162411 | 38.235 | 102 | 61 | 1 | 13 | 114 | 7 | 106 | 3.54e-19 | 82.8 |
Msa1146420 | MtrunA17_Chr1g0163241 | 42.708 | 96 | 48 | 2 | 29 | 119 | 23 | 116 | 7.30e-19 | 78.6 |
Msa1146420 | MtrunA17_Chr4g0009491 | 32.432 | 111 | 72 | 1 | 27 | 137 | 11 | 118 | 1.83e-18 | 80.9 |
Msa1146420 | MtrunA17_Chr4g0009491 | 36.538 | 104 | 66 | 0 | 9 | 112 | 221 | 324 | 1.52e-17 | 78.2 |
Msa1146420 | MtrunA17_Chr1g0163221 | 38.318 | 107 | 65 | 1 | 7 | 112 | 5 | 111 | 2.14e-18 | 80.1 |
Msa1146420 | MtrunA17_Chr3g0077451 | 30.081 | 123 | 77 | 1 | 27 | 149 | 10 | 123 | 3.88e-18 | 78.2 |
Msa1146420 | MtrunA17_Chr1g0163061 | 41.748 | 103 | 59 | 1 | 11 | 112 | 13 | 115 | 8.31e-18 | 77.8 |
Msa1146420 | MtrunA17_Chr1g0163141 | 40.000 | 100 | 57 | 2 | 27 | 126 | 9 | 105 | 1.08e-17 | 75.9 |
Msa1146420 | MtrunA17_Chr1g0163261 | 34.615 | 130 | 83 | 1 | 13 | 142 | 9 | 136 | 1.62e-17 | 77.4 |
Msa1146420 | MtrunA17_Chr1g0163201 | 42.529 | 87 | 48 | 1 | 29 | 115 | 19 | 103 | 2.15e-17 | 77.8 |
Msa1146420 | MtrunA17_Chr3g0077361 | 30.137 | 146 | 86 | 4 | 3 | 139 | 30 | 168 | 1.01e-16 | 76.3 |
Msa1146420 | MtrunA17_Chr5g0429931 | 32.773 | 119 | 75 | 2 | 29 | 143 | 11 | 128 | 2.21e-16 | 73.6 |
Msa1146420 | MtrunA17_Chr1g0162161 | 35.514 | 107 | 66 | 2 | 28 | 134 | 3 | 106 | 2.30e-16 | 71.6 |
Msa1146420 | MtrunA17_Chr6g0476181 | 40.404 | 99 | 56 | 2 | 28 | 126 | 1 | 96 | 3.74e-16 | 71.2 |
Msa1146420 | MtrunA17_Chr1g0163081 | 39.583 | 96 | 55 | 2 | 28 | 123 | 5 | 97 | 2.74e-15 | 68.6 |
Msa1146420 | MtrunA17_Chr1g0154071 | 31.496 | 127 | 82 | 2 | 9 | 132 | 153 | 277 | 3.88e-14 | 68.6 |
Msa1146420 | MtrunA17_Chr1g0154071 | 28.866 | 97 | 68 | 1 | 11 | 107 | 26 | 121 | 3.93e-11 | 60.1 |
Msa1146420 | MtrunA17_Chr1g0154101 | 33.696 | 92 | 61 | 0 | 11 | 102 | 23 | 114 | 4.60e-14 | 68.6 |
Msa1146420 | MtrunA17_Chr1g0154101 | 31.731 | 104 | 66 | 3 | 11 | 111 | 182 | 283 | 1.30e-12 | 64.3 |
Msa1146420 | MtrunA17_Chr1g0154251 | 32.258 | 93 | 62 | 1 | 11 | 103 | 25 | 116 | 6.57e-14 | 68.2 |
Msa1146420 | MtrunA17_Chr1g0154211 | 33.333 | 93 | 61 | 1 | 11 | 103 | 21 | 112 | 8.18e-14 | 67.8 |
Msa1146420 | MtrunA17_Chr1g0154161 | 30.928 | 97 | 67 | 0 | 11 | 107 | 28 | 124 | 1.03e-13 | 67.0 |
Msa1146420 | MtrunA17_Chr1g0163161 | 36.082 | 97 | 57 | 3 | 41 | 135 | 1 | 94 | 7.52e-13 | 62.0 |
Msa1146420 | MtrunA17_Chr1g0154171 | 31.579 | 95 | 64 | 1 | 11 | 105 | 21 | 114 | 9.28e-13 | 64.3 |
Msa1146420 | MtrunA17_Chr1g0154041 | 32.673 | 101 | 67 | 1 | 8 | 108 | 11 | 110 | 1.63e-12 | 63.9 |
Msa1146420 | MtrunA17_Chr1g0154131 | 31.959 | 97 | 64 | 1 | 11 | 107 | 182 | 276 | 3.45e-12 | 63.2 |
Msa1146420 | MtrunA17_Chr1g0154241 | 29.897 | 97 | 67 | 1 | 11 | 107 | 20 | 115 | 1.87e-11 | 60.5 |
Msa1146420 | MtrunA17_Chr1g0154191 | 30.108 | 93 | 65 | 0 | 11 | 103 | 20 | 112 | 2.64e-11 | 60.5 |
Msa1146420 | MtrunA17_Chr1g0154151 | 34.667 | 75 | 49 | 0 | 29 | 103 | 20 | 94 | 4.36e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1146420 | AT1G49475.1 | 41.739 | 115 | 66 | 1 | 6 | 120 | 27 | 140 | 3.26e-25 | 95.9 |
Msa1146420 | AT3G18990.1 | 45.098 | 102 | 56 | 0 | 13 | 114 | 6 | 107 | 7.38e-25 | 98.2 |
Msa1146420 | AT3G18990.2 | 45.098 | 102 | 56 | 0 | 13 | 114 | 6 | 107 | 1.16e-24 | 97.8 |
Msa1146420 | AT4G01580.1 | 40.187 | 107 | 64 | 0 | 6 | 112 | 23 | 129 | 1.50e-23 | 91.7 |
Msa1146420 | AT3G18960.1 | 38.739 | 111 | 68 | 0 | 2 | 112 | 19 | 129 | 5.73e-23 | 90.5 |
Msa1146420 | AT3G18960.2 | 38.739 | 111 | 68 | 0 | 2 | 112 | 19 | 129 | 6.32e-23 | 90.1 |
Msa1146420 | AT3G18960.3 | 43.182 | 88 | 50 | 0 | 29 | 116 | 9 | 96 | 6.19e-19 | 79.0 |
Msa1146420 | AT3G53310.1 | 32.258 | 93 | 62 | 1 | 12 | 104 | 10 | 101 | 2.64e-11 | 60.5 |
Msa1146420 | AT4G33280.2 | 33.333 | 102 | 61 | 3 | 9 | 107 | 21 | 118 | 3.54e-11 | 60.1 |
Msa1146420 | AT4G33280.3 | 33.333 | 102 | 61 | 3 | 9 | 107 | 21 | 118 | 4.44e-11 | 60.1 |
Msa1146420 | AT4G33280.1 | 33.333 | 102 | 61 | 3 | 9 | 107 | 21 | 118 | 6.97e-11 | 59.3 |
Find 30 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTCTACAATCCTCATTATT+TGG | 0.147186 | 7_4:+24022647 | None:intergenic |
TGCAAAATGGACATTAAATT+TGG | 0.181659 | 7_4:-24022879 | Msa1146420:CDS |
CCACAAGAGTTGAAGCTAAA+AGG | 0.209640 | 7_4:-24022697 | Msa1146420:CDS |
TATTTCTCCACAAACTTTCT+TGG | 0.217927 | 7_4:+24022947 | None:intergenic |
ATTTGGAGTCTTTAGATATA+TGG | 0.264588 | 7_4:+24022904 | None:intergenic |
AGAAAGTTTGTGGAGAAATA+TGG | 0.293086 | 7_4:-24022944 | Msa1146420:CDS |
TTTCATCAACCACATGAAAT+AGG | 0.315408 | 7_4:-24022588 | None:intergenic |
AGACTCCAAATGGTGCAAAA+TGG | 0.339005 | 7_4:-24022892 | Msa1146420:CDS |
GGAAGGGTAACTTATCTCTA+AGG | 0.432576 | 7_4:+24022718 | None:intergenic |
TGGCAAGATATGGTTTGAAA+AGG | 0.433004 | 7_4:-24022846 | Msa1146420:CDS |
CACAAGAGTTGAAGCTAAAA+GGG | 0.438433 | 7_4:-24022696 | Msa1146420:CDS |
GATGATGCCAAGAAAGTTTG+TGG | 0.445895 | 7_4:-24022954 | Msa1146420:CDS |
CATATTTGAAAAGCAGAAGA+TGG | 0.450028 | 7_4:+24022783 | None:intergenic |
AGATATGGTTTGAAAAGGGT+TGG | 0.475702 | 7_4:-24022841 | Msa1146420:CDS |
CTTCACCTCAGGAATTTCAC+TGG | 0.477594 | 7_4:+24024514 | None:intergenic |
ATATATCTAAAGACTCCAAA+TGG | 0.497009 | 7_4:-24022902 | Msa1146420:CDS |
TTAGCTTCAACTCTTGTGGA+AGG | 0.514301 | 7_4:+24022701 | None:intergenic |
GGCAAGATATGGTTTGAAAA+GGG | 0.522590 | 7_4:-24022845 | Msa1146420:CDS |
AAGTGGATTGACTTCACCTC+AGG | 0.534487 | 7_4:+24024503 | None:intergenic |
GGTTGATGAAATTCAAATGA+GGG | 0.554318 | 7_4:+24022600 | None:intergenic |
CTATAAATCTCCAAATAATG+AGG | 0.558294 | 7_4:-24022657 | Msa1146420:CDS |
TAGCTTCAACTCTTGTGGAA+GGG | 0.568047 | 7_4:+24022702 | None:intergenic |
CTTACTCACAACATTCATGA+AGG | 0.573729 | 7_4:-24024467 | Msa1146420:CDS |
TTTGTGGAGAAATATGGAGA+AGG | 0.578281 | 7_4:-24022938 | Msa1146420:CDS |
CTACTGCTTCCTATTTCATG+TGG | 0.590187 | 7_4:+24022579 | None:intergenic |
CAGCATCACTCACTAGCTCA+TGG | 0.601771 | 7_4:-24022806 | Msa1146420:CDS |
TGGTTGATGAAATTCAAATG+AGG | 0.612311 | 7_4:+24022599 | None:intergenic |
GAAGCTAAAAGGGTCTCGAA+TGG | 0.643697 | 7_4:-24022686 | Msa1146420:CDS |
GTTGATGAAATTCAAATGAG+GGG | 0.661864 | 7_4:+24022601 | None:intergenic |
CATGGCCAGTGAAATTCCTG+AGG | 0.703012 | 7_4:-24024519 | Msa1146420:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTAATTTATGATTTTCT+TGG | - | chr7_4:24023227-24023246 | Msa1146420:intron | 10.0% |
!!! | TATTAATTTATGATTTTCTT+GGG | - | chr7_4:24023228-24023247 | Msa1146420:intron | 10.0% |
!!! | TTATTAATTTATGATTTTCT+TGG | - | chr7_4:24023227-24023246 | Msa1146420:intron | 10.0% |
!!! | TATTAATTTATGATTTTCTT+GGG | - | chr7_4:24023228-24023247 | Msa1146420:intron | 10.0% |
!! | TGTTTCTTTATCTTATAAAA+TGG | - | chr7_4:24022708-24022727 | Msa1146420:CDS | 15.0% |
!! | ACTCTATAAATTAATAATGT+TGG | - | chr7_4:24022915-24022934 | Msa1146420:CDS | 15.0% |
!! | CTCTATAAATTAATAATGTT+GGG | - | chr7_4:24022916-24022935 | Msa1146420:CDS | 15.0% |
!! | TCTAAATTAATAAATTTCTC+CGG | + | chr7_4:24022943-24022962 | None:intergenic | 15.0% |
!!! | AGTTTTTCAATTTTTTACAT+TGG | - | chr7_4:24023304-24023323 | Msa1146420:intron | 15.0% |
!!! | TCTAAAATAATAAATTTGTC+CGG | + | chr7_4:24023342-24023361 | None:intergenic | 15.0% |
!!! | ATTCAATTGTTAATTTGTTA+TGG | + | chr7_4:24023814-24023833 | None:intergenic | 15.0% |
!! | TGTTTCTTTATCTTATAAAA+TGG | - | chr7_4:24022708-24022727 | Msa1146420:CDS | 15.0% |
!! | ACTCTATAAATTAATAATGT+TGG | - | chr7_4:24022915-24022934 | Msa1146420:CDS | 15.0% |
!! | CTCTATAAATTAATAATGTT+GGG | - | chr7_4:24022916-24022935 | Msa1146420:CDS | 15.0% |
!! | TCTAAATTAATAAATTTCTC+CGG | + | chr7_4:24022943-24022962 | None:intergenic | 15.0% |
!!! | AGTTTTTCAATTTTTTACAT+TGG | - | chr7_4:24023304-24023323 | Msa1146420:intron | 15.0% |
!!! | TCTAAAATAATAAATTTGTC+CGG | + | chr7_4:24023342-24023361 | None:intergenic | 15.0% |
!!! | ATTCAATTGTTAATTTGTTA+TGG | + | chr7_4:24023814-24023833 | None:intergenic | 15.0% |
!!! | ATAGAGTTTTAACTGTATTT+AGG | + | chr7_4:24022902-24022921 | None:intergenic | 20.0% |
!!! | GACTAATTTGTTTTTTTGTT+TGG | + | chr7_4:24023035-24023054 | None:intergenic | 20.0% |
!! | AAACTCTTTGAATTAATACT+CGG | + | chr7_4:24023380-24023399 | None:intergenic | 20.0% |
!!! | GTTAATTTGTTATGGTATTT+GGG | + | chr7_4:24023806-24023825 | None:intergenic | 20.0% |
!!! | TGTTAATTTGTTATGGTATT+TGG | + | chr7_4:24023807-24023826 | None:intergenic | 20.0% |
!! | TTAAATTTGGTAAAAAGTGA+TGG | - | chr7_4:24024241-24024260 | Msa1146420:intron | 20.0% |
!!! | ATAGAGTTTTAACTGTATTT+AGG | + | chr7_4:24022902-24022921 | None:intergenic | 20.0% |
!!! | GACTAATTTGTTTTTTTGTT+TGG | + | chr7_4:24023035-24023054 | None:intergenic | 20.0% |
!! | AAACTCTTTGAATTAATACT+CGG | + | chr7_4:24023380-24023399 | None:intergenic | 20.0% |
!!! | GTTAATTTGTTATGGTATTT+GGG | + | chr7_4:24023806-24023825 | None:intergenic | 20.0% |
!!! | TGTTAATTTGTTATGGTATT+TGG | + | chr7_4:24023807-24023826 | None:intergenic | 20.0% |
!! | TTAAATTTGGTAAAAAGTGA+TGG | - | chr7_4:24024241-24024260 | Msa1146420:intron | 20.0% |
! | TAAGTATGATCTTGAAAAAG+TGG | + | chr7_4:24022624-24022643 | None:intergenic | 25.0% |
! | TTTGTTTGTTTGAAGAAAAC+AGG | - | chr7_4:24022744-24022763 | Msa1146420:CDS | 25.0% |
! | CATATGACGTAATATATGAA+GGG | - | chr7_4:24022809-24022828 | Msa1146420:CDS | 25.0% |
! | TAAATTAATAATGTTGGGAC+CGG | - | chr7_4:24022921-24022940 | Msa1146420:CDS | 25.0% |
!! | GAAGATCCCTTTATAATTTT+CGG | + | chr7_4:24023255-24023274 | None:intergenic | 25.0% |
!!! | TGGGATTTTTTTTTTCTTGT+TGG | - | chr7_4:24023440-24023459 | Msa1146420:intron | 25.0% |
!!! | GGGATTTTTTTTTTCTTGTT+GGG | - | chr7_4:24023441-24023460 | Msa1146420:intron | 25.0% |
!!! | GGATTTTTTTTTTCTTGTTG+GGG | - | chr7_4:24023442-24023461 | Msa1146420:intron | 25.0% |
!!! | CGATTCGGTAAAAATTAAAT+TGG | - | chr7_4:24023630-24023649 | Msa1146420:intron | 25.0% |
! | TTGTGCTGTAAAAAAAGATA+TGG | + | chr7_4:24024054-24024073 | None:intergenic | 25.0% |
!! | ATTTGGAGTCTTTAGATATA+TGG | + | chr7_4:24024206-24024225 | None:intergenic | 25.0% |
! | ATATATCTAAAGACTCCAAA+TGG | - | chr7_4:24024205-24024224 | Msa1146420:intron | 25.0% |
! | TGCAAAATGGACATTAAATT+TGG | - | chr7_4:24024228-24024247 | Msa1146420:intron | 25.0% |
! | AAAAACGTGCACATAAAAAT+GGG | + | chr7_4:24024359-24024378 | None:intergenic | 25.0% |
! | CTATAAATCTCCAAATAATG+AGG | - | chr7_4:24024450-24024469 | Msa1146420:intron | 25.0% |
! | TAAGTATGATCTTGAAAAAG+TGG | + | chr7_4:24022624-24022643 | None:intergenic | 25.0% |
! | TTTGTTTGTTTGAAGAAAAC+AGG | - | chr7_4:24022744-24022763 | Msa1146420:CDS | 25.0% |
! | CATATGACGTAATATATGAA+GGG | - | chr7_4:24022809-24022828 | Msa1146420:CDS | 25.0% |
! | TAAATTAATAATGTTGGGAC+CGG | - | chr7_4:24022921-24022940 | Msa1146420:CDS | 25.0% |
!! | GAAGATCCCTTTATAATTTT+CGG | + | chr7_4:24023255-24023274 | None:intergenic | 25.0% |
!!! | TGGGATTTTTTTTTTCTTGT+TGG | - | chr7_4:24023440-24023459 | Msa1146420:intron | 25.0% |
!!! | GGGATTTTTTTTTTCTTGTT+GGG | - | chr7_4:24023441-24023460 | Msa1146420:intron | 25.0% |
!!! | GGATTTTTTTTTTCTTGTTG+GGG | - | chr7_4:24023442-24023461 | Msa1146420:intron | 25.0% |
!!! | CGATTCGGTAAAAATTAAAT+TGG | - | chr7_4:24023630-24023649 | Msa1146420:intron | 25.0% |
! | TTGTGCTGTAAAAAAAGATA+TGG | + | chr7_4:24024054-24024073 | None:intergenic | 25.0% |
!! | ATTTGGAGTCTTTAGATATA+TGG | + | chr7_4:24024206-24024225 | None:intergenic | 25.0% |
! | ATATATCTAAAGACTCCAAA+TGG | - | chr7_4:24024205-24024224 | Msa1146420:intron | 25.0% |
! | TGCAAAATGGACATTAAATT+TGG | - | chr7_4:24024228-24024247 | Msa1146420:intron | 25.0% |
! | AAAAACGTGCACATAAAAAT+GGG | + | chr7_4:24024359-24024378 | None:intergenic | 25.0% |
! | CTATAAATCTCCAAATAATG+AGG | - | chr7_4:24024450-24024469 | Msa1146420:intron | 25.0% |
CCTTCATATATTACGTCATA+TGG | + | chr7_4:24022811-24022830 | None:intergenic | 30.0% | |
CCATATGACGTAATATATGA+AGG | - | chr7_4:24022808-24022827 | Msa1146420:CDS | 30.0% | |
TAATGTGTTCATCTGTTAGA+TGG | + | chr7_4:24022855-24022874 | None:intergenic | 30.0% | |
GTACAGTAAATGTAAACAAG+AGG | - | chr7_4:24023153-24023172 | Msa1146420:intron | 30.0% | |
TTGGGACCGAAAATTATAAA+GGG | - | chr7_4:24023246-24023265 | Msa1146420:intron | 30.0% | |
TAAACACAAAACTGACAGAT+TGG | - | chr7_4:24023420-24023439 | Msa1146420:intron | 30.0% | |
AAACACAAAACTGACAGATT+GGG | - | chr7_4:24023421-24023440 | Msa1146420:intron | 30.0% | |
! | TTTTCTTGTTGGGGTTTATA+AGG | - | chr7_4:24023451-24023470 | Msa1146420:intron | 30.0% |
AATCGAGCATAACTTAATCT+CGG | + | chr7_4:24023615-24023634 | None:intergenic | 30.0% | |
AGATTAAGTTATGCTCGATT+CGG | - | chr7_4:24023615-24023634 | Msa1146420:intron | 30.0% | |
TAACAATTGAATCATGCGAT+AGG | - | chr7_4:24023822-24023841 | Msa1146420:intron | 30.0% | |
TAAACAATTGAGAGCTAGAT+TGG | + | chr7_4:24023921-24023940 | None:intergenic | 30.0% | |
TTGTTTAAAAAATACCGTCG+TGG | - | chr7_4:24023934-24023953 | Msa1146420:intron | 30.0% | |
TGTTTAAAAAATACCGTCGT+GGG | - | chr7_4:24023935-24023954 | Msa1146420:intron | 30.0% | |
ATTCTCATATAGTGGTTTCA+TGG | - | chr7_4:24023961-24023980 | Msa1146420:intron | 30.0% | |
!!! | TCGTATCTCTTTTAGTTTGA+AGG | - | chr7_4:24024028-24024047 | Msa1146420:intron | 30.0% |
TTCTATCACGAGTACTAATT+TGG | - | chr7_4:24024115-24024134 | Msa1146420:intron | 30.0% | |
TATTTCTCCACAAACTTTCT+TGG | + | chr7_4:24024163-24024182 | None:intergenic | 30.0% | |
AGAAAGTTTGTGGAGAAATA+TGG | - | chr7_4:24024163-24024182 | Msa1146420:intron | 30.0% | |
TAAAAAGTGATGGCAAGATA+TGG | - | chr7_4:24024251-24024270 | Msa1146420:intron | 30.0% | |
CATATTTGAAAAGCAGAAGA+TGG | + | chr7_4:24024327-24024346 | None:intergenic | 30.0% | |
CAAAAACGTGCACATAAAAA+TGG | + | chr7_4:24024360-24024379 | None:intergenic | 30.0% | |
! | GTTGATGAAATTCAAATGAG+GGG | + | chr7_4:24024509-24024528 | None:intergenic | 30.0% |
!! | GGTTGATGAAATTCAAATGA+GGG | + | chr7_4:24024510-24024529 | None:intergenic | 30.0% |
!! | TGGTTGATGAAATTCAAATG+AGG | + | chr7_4:24024511-24024530 | None:intergenic | 30.0% |
CCTTCATATATTACGTCATA+TGG | + | chr7_4:24022811-24022830 | None:intergenic | 30.0% | |
CCATATGACGTAATATATGA+AGG | - | chr7_4:24022808-24022827 | Msa1146420:CDS | 30.0% | |
TAATGTGTTCATCTGTTAGA+TGG | + | chr7_4:24022855-24022874 | None:intergenic | 30.0% | |
GTACAGTAAATGTAAACAAG+AGG | - | chr7_4:24023153-24023172 | Msa1146420:intron | 30.0% | |
TTGGGACCGAAAATTATAAA+GGG | - | chr7_4:24023246-24023265 | Msa1146420:intron | 30.0% | |
TAAACACAAAACTGACAGAT+TGG | - | chr7_4:24023420-24023439 | Msa1146420:intron | 30.0% | |
AAACACAAAACTGACAGATT+GGG | - | chr7_4:24023421-24023440 | Msa1146420:intron | 30.0% | |
! | TTTTCTTGTTGGGGTTTATA+AGG | - | chr7_4:24023451-24023470 | Msa1146420:intron | 30.0% |
AATCGAGCATAACTTAATCT+CGG | + | chr7_4:24023615-24023634 | None:intergenic | 30.0% | |
AGATTAAGTTATGCTCGATT+CGG | - | chr7_4:24023615-24023634 | Msa1146420:intron | 30.0% | |
TAACAATTGAATCATGCGAT+AGG | - | chr7_4:24023822-24023841 | Msa1146420:intron | 30.0% | |
TAAACAATTGAGAGCTAGAT+TGG | + | chr7_4:24023921-24023940 | None:intergenic | 30.0% | |
TTGTTTAAAAAATACCGTCG+TGG | - | chr7_4:24023934-24023953 | Msa1146420:intron | 30.0% | |
TGTTTAAAAAATACCGTCGT+GGG | - | chr7_4:24023935-24023954 | Msa1146420:intron | 30.0% | |
ATTCTCATATAGTGGTTTCA+TGG | - | chr7_4:24023961-24023980 | Msa1146420:intron | 30.0% | |
!!! | TCGTATCTCTTTTAGTTTGA+AGG | - | chr7_4:24024028-24024047 | Msa1146420:intron | 30.0% |
TTCTATCACGAGTACTAATT+TGG | - | chr7_4:24024115-24024134 | Msa1146420:intron | 30.0% | |
TATTTCTCCACAAACTTTCT+TGG | + | chr7_4:24024163-24024182 | None:intergenic | 30.0% | |
AGAAAGTTTGTGGAGAAATA+TGG | - | chr7_4:24024163-24024182 | Msa1146420:intron | 30.0% | |
TAAAAAGTGATGGCAAGATA+TGG | - | chr7_4:24024251-24024270 | Msa1146420:intron | 30.0% | |
CATATTTGAAAAGCAGAAGA+TGG | + | chr7_4:24024327-24024346 | None:intergenic | 30.0% | |
CAAAAACGTGCACATAAAAA+TGG | + | chr7_4:24024360-24024379 | None:intergenic | 30.0% | |
! | GTTGATGAAATTCAAATGAG+GGG | + | chr7_4:24024509-24024528 | None:intergenic | 30.0% |
!! | GGTTGATGAAATTCAAATGA+GGG | + | chr7_4:24024510-24024529 | None:intergenic | 30.0% |
!! | TGGTTGATGAAATTCAAATG+AGG | + | chr7_4:24024511-24024530 | None:intergenic | 30.0% |
CTTACTCACAACATTCATGA+AGG | - | chr7_4:24022640-24022659 | Msa1146420:CDS | 35.0% | |
ACTACTGTGTTCATATGCAT+TGG | - | chr7_4:24023109-24023128 | Msa1146420:intron | 35.0% | |
CTTGGGACCGAAAATTATAA+AGG | - | chr7_4:24023245-24023264 | Msa1146420:intron | 35.0% | |
ATAATAAATTTGTCCGGTCC+CGG | + | chr7_4:24023336-24023355 | None:intergenic | 35.0% | |
TATGAGCAACATACAAGTAG+TGG | - | chr7_4:24023488-24023507 | Msa1146420:intron | 35.0% | |
TTACCTTATCCTCTTAGGTT+GGG | - | chr7_4:24023556-24023575 | Msa1146420:intron | 35.0% | |
AGCTCACAAACAATTCGATT+CGG | - | chr7_4:24023703-24023722 | Msa1146420:intron | 35.0% | |
GTTAAAAGTCTCACATCGTT+TGG | - | chr7_4:24024092-24024111 | Msa1146420:intron | 35.0% | |
TTTGTGGAGAAATATGGAGA+AGG | - | chr7_4:24024169-24024188 | Msa1146420:intron | 35.0% | |
! | AATGTCCATTTTGCACCATT+TGG | + | chr7_4:24024223-24024242 | None:intergenic | 35.0% |
TGGCAAGATATGGTTTGAAA+AGG | - | chr7_4:24024261-24024280 | Msa1146420:intron | 35.0% | |
GGCAAGATATGGTTTGAAAA+GGG | - | chr7_4:24024262-24024281 | Msa1146420:intron | 35.0% | |
AGATATGGTTTGAAAAGGGT+TGG | - | chr7_4:24024266-24024285 | Msa1146420:intron | 35.0% | |
CACAAGAGTTGAAGCTAAAA+GGG | - | chr7_4:24024411-24024430 | Msa1146420:intron | 35.0% | |
GCTCTACAATCCTCATTATT+TGG | + | chr7_4:24024463-24024482 | None:intergenic | 35.0% | |
CTTACTCACAACATTCATGA+AGG | - | chr7_4:24022640-24022659 | Msa1146420:CDS | 35.0% | |
ACTACTGTGTTCATATGCAT+TGG | - | chr7_4:24023109-24023128 | Msa1146420:intron | 35.0% | |
CTTGGGACCGAAAATTATAA+AGG | - | chr7_4:24023245-24023264 | Msa1146420:intron | 35.0% | |
ATAATAAATTTGTCCGGTCC+CGG | + | chr7_4:24023336-24023355 | None:intergenic | 35.0% | |
TATGAGCAACATACAAGTAG+TGG | - | chr7_4:24023488-24023507 | Msa1146420:intron | 35.0% | |
TTACCTTATCCTCTTAGGTT+GGG | - | chr7_4:24023556-24023575 | Msa1146420:intron | 35.0% | |
AGCTCACAAACAATTCGATT+CGG | - | chr7_4:24023703-24023722 | Msa1146420:intron | 35.0% | |
GTTAAAAGTCTCACATCGTT+TGG | - | chr7_4:24024092-24024111 | Msa1146420:intron | 35.0% | |
TTTGTGGAGAAATATGGAGA+AGG | - | chr7_4:24024169-24024188 | Msa1146420:intron | 35.0% | |
! | AATGTCCATTTTGCACCATT+TGG | + | chr7_4:24024223-24024242 | None:intergenic | 35.0% |
TGGCAAGATATGGTTTGAAA+AGG | - | chr7_4:24024261-24024280 | Msa1146420:intron | 35.0% | |
GGCAAGATATGGTTTGAAAA+GGG | - | chr7_4:24024262-24024281 | Msa1146420:intron | 35.0% | |
AGATATGGTTTGAAAAGGGT+TGG | - | chr7_4:24024266-24024285 | Msa1146420:intron | 35.0% | |
CACAAGAGTTGAAGCTAAAA+GGG | - | chr7_4:24024411-24024430 | Msa1146420:intron | 35.0% | |
GCTCTACAATCCTCATTATT+TGG | + | chr7_4:24024463-24024482 | None:intergenic | 35.0% | |
CTAATTTACGTTGAGTCCCA+AGG | + | chr7_4:24023087-24023106 | None:intergenic | 40.0% | |
!!! | TTTTTTACATTGGCCCAAGC+CGG | - | chr7_4:24023314-24023333 | Msa1146420:intron | 40.0% |
CATACAAGTAGTGGCGAAAA+AGG | - | chr7_4:24023497-24023516 | Msa1146420:intron | 40.0% | |
CTACCTTACCTTATCCTCTT+AGG | - | chr7_4:24023551-24023570 | Msa1146420:intron | 40.0% | |
CAACCTAAGAGGATAAGGTA+AGG | + | chr7_4:24023557-24023576 | None:intergenic | 40.0% | |
CTTACCTTATCCTCTTAGGT+TGG | - | chr7_4:24023555-24023574 | Msa1146420:intron | 40.0% | |
CGATAGGCTGAGAACAAATT+TGG | - | chr7_4:24023838-24023857 | Msa1146420:intron | 40.0% | |
! | TGGTCTTAAGACCAAGTAAC+AGG | - | chr7_4:24023858-24023877 | Msa1146420:intron | 40.0% |
ATATGAGAATAGTCCCACGA+CGG | + | chr7_4:24023951-24023970 | None:intergenic | 40.0% | |
GTGGGACTATTCTCATATAG+TGG | - | chr7_4:24023953-24023972 | Msa1146420:intron | 40.0% | |
GATGATGCCAAGAAAGTTTG+TGG | - | chr7_4:24024153-24024172 | Msa1146420:intron | 40.0% | |
AGACTCCAAATGGTGCAAAA+TGG | - | chr7_4:24024215-24024234 | Msa1146420:intron | 40.0% | |
GGAAGGGTAACTTATCTCTA+AGG | + | chr7_4:24024392-24024411 | None:intergenic | 40.0% | |
TAGCTTCAACTCTTGTGGAA+GGG | + | chr7_4:24024408-24024427 | None:intergenic | 40.0% | |
TTAGCTTCAACTCTTGTGGA+AGG | + | chr7_4:24024409-24024428 | None:intergenic | 40.0% | |
!!! | CCTTTTAGCTTCAACTCTTG+TGG | + | chr7_4:24024413-24024432 | None:intergenic | 40.0% |
CCACAAGAGTTGAAGCTAAA+AGG | - | chr7_4:24024410-24024429 | Msa1146420:intron | 40.0% | |
CTAATTTACGTTGAGTCCCA+AGG | + | chr7_4:24023087-24023106 | None:intergenic | 40.0% | |
!!! | TTTTTTACATTGGCCCAAGC+CGG | - | chr7_4:24023314-24023333 | Msa1146420:intron | 40.0% |
CATACAAGTAGTGGCGAAAA+AGG | - | chr7_4:24023497-24023516 | Msa1146420:intron | 40.0% | |
CTACCTTACCTTATCCTCTT+AGG | - | chr7_4:24023551-24023570 | Msa1146420:intron | 40.0% | |
CAACCTAAGAGGATAAGGTA+AGG | + | chr7_4:24023557-24023576 | None:intergenic | 40.0% | |
CTTACCTTATCCTCTTAGGT+TGG | - | chr7_4:24023555-24023574 | Msa1146420:intron | 40.0% | |
CGATAGGCTGAGAACAAATT+TGG | - | chr7_4:24023838-24023857 | Msa1146420:intron | 40.0% | |
! | TGGTCTTAAGACCAAGTAAC+AGG | - | chr7_4:24023858-24023877 | Msa1146420:intron | 40.0% |
ATATGAGAATAGTCCCACGA+CGG | + | chr7_4:24023951-24023970 | None:intergenic | 40.0% | |
GTGGGACTATTCTCATATAG+TGG | - | chr7_4:24023953-24023972 | Msa1146420:intron | 40.0% | |
GATGATGCCAAGAAAGTTTG+TGG | - | chr7_4:24024153-24024172 | Msa1146420:intron | 40.0% | |
AGACTCCAAATGGTGCAAAA+TGG | - | chr7_4:24024215-24024234 | Msa1146420:intron | 40.0% | |
GGAAGGGTAACTTATCTCTA+AGG | + | chr7_4:24024392-24024411 | None:intergenic | 40.0% | |
TAGCTTCAACTCTTGTGGAA+GGG | + | chr7_4:24024408-24024427 | None:intergenic | 40.0% | |
TTAGCTTCAACTCTTGTGGA+AGG | + | chr7_4:24024409-24024428 | None:intergenic | 40.0% | |
!!! | CCTTTTAGCTTCAACTCTTG+TGG | + | chr7_4:24024413-24024432 | None:intergenic | 40.0% |
CCACAAGAGTTGAAGCTAAA+AGG | - | chr7_4:24024410-24024429 | Msa1146420:intron | 40.0% | |
CTTCACCTCAGGAATTTCAC+TGG | + | chr7_4:24022596-24022615 | None:intergenic | 45.0% | |
!! | AAGTGGATTGACTTCACCTC+AGG | + | chr7_4:24022607-24022626 | None:intergenic | 45.0% |
AATTACGTTGCAGCGAACCT+TGG | - | chr7_4:24023067-24023086 | Msa1146420:intron | 45.0% | |
ATTACGTTGCAGCGAACCTT+GGG | - | chr7_4:24023068-24023087 | Msa1146420:intron | 45.0% | |
! | TTTTTACATTGGCCCAAGCC+GGG | - | chr7_4:24023315-24023334 | Msa1146420:intron | 45.0% |
AAGCCCAACCTAAGAGGATA+AGG | + | chr7_4:24023562-24023581 | None:intergenic | 45.0% | |
!! | TATCCTCTTAGGTTGGGCTT+AGG | - | chr7_4:24023562-24023581 | Msa1146420:intron | 45.0% |
!! | ATCCTCTTAGGTTGGGCTTA+GGG | - | chr7_4:24023563-24023582 | Msa1146420:intron | 45.0% |
CCAATGCATTGCCTGTTACT+TGG | + | chr7_4:24023872-24023891 | None:intergenic | 45.0% | |
CCAAGTAACAGGCAATGCAT+TGG | - | chr7_4:24023869-24023888 | Msa1146420:intron | 45.0% | |
GAAGCTAAAAGGGTCTCGAA+TGG | - | chr7_4:24024421-24024440 | Msa1146420:intron | 45.0% | |
CTTCACCTCAGGAATTTCAC+TGG | + | chr7_4:24022596-24022615 | None:intergenic | 45.0% | |
!! | AAGTGGATTGACTTCACCTC+AGG | + | chr7_4:24022607-24022626 | None:intergenic | 45.0% |
AATTACGTTGCAGCGAACCT+TGG | - | chr7_4:24023067-24023086 | Msa1146420:intron | 45.0% | |
ATTACGTTGCAGCGAACCTT+GGG | - | chr7_4:24023068-24023087 | Msa1146420:intron | 45.0% | |
! | TTTTTACATTGGCCCAAGCC+GGG | - | chr7_4:24023315-24023334 | Msa1146420:intron | 45.0% |
AAGCCCAACCTAAGAGGATA+AGG | + | chr7_4:24023562-24023581 | None:intergenic | 45.0% | |
!! | TATCCTCTTAGGTTGGGCTT+AGG | - | chr7_4:24023562-24023581 | Msa1146420:intron | 45.0% |
!! | ATCCTCTTAGGTTGGGCTTA+GGG | - | chr7_4:24023563-24023582 | Msa1146420:intron | 45.0% |
CCAATGCATTGCCTGTTACT+TGG | + | chr7_4:24023872-24023891 | None:intergenic | 45.0% | |
CCAAGTAACAGGCAATGCAT+TGG | - | chr7_4:24023869-24023888 | Msa1146420:intron | 45.0% | |
GAAGCTAAAAGGGTCTCGAA+TGG | - | chr7_4:24024421-24024440 | Msa1146420:intron | 45.0% | |
!!! | ATAATAAGATAATAATTTTT+CGG | + | chr7_4:24023277-24023296 | None:intergenic | 5.0% |
!!! | ATAATAAGATAATAATTTTT+CGG | + | chr7_4:24023277-24023296 | None:intergenic | 5.0% |
CAGCATCACTCACTAGCTCA+TGG | - | chr7_4:24024301-24024320 | Msa1146420:intron | 50.0% | |
CAGCATCACTCACTAGCTCA+TGG | - | chr7_4:24024301-24024320 | Msa1146420:intron | 50.0% | |
AATTTGTCCGGTCCCGGCTT+GGG | + | chr7_4:24023330-24023349 | None:intergenic | 55.0% | |
AAATTTGTCCGGTCCCGGCT+TGG | + | chr7_4:24023331-24023350 | None:intergenic | 55.0% | |
GACCCTAAGCCCAACCTAAG+AGG | + | chr7_4:24023568-24023587 | None:intergenic | 55.0% | |
AATTTGTCCGGTCCCGGCTT+GGG | + | chr7_4:24023330-24023349 | None:intergenic | 55.0% | |
AAATTTGTCCGGTCCCGGCT+TGG | + | chr7_4:24023331-24023350 | None:intergenic | 55.0% | |
GACCCTAAGCCCAACCTAAG+AGG | + | chr7_4:24023568-24023587 | None:intergenic | 55.0% | |
ACATTGGCCCAAGCCGGGAC+CGG | - | chr7_4:24023320-24023339 | Msa1146420:intron | 65.0% | |
ACATTGGCCCAAGCCGGGAC+CGG | - | chr7_4:24023320-24023339 | Msa1146420:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 24022589 | 24024540 | 24022589 | ID=Msa1146420;Name=Msa1146420 |
chr7_4 | mRNA | 24022589 | 24024540 | 24022589 | ID=Msa1146420-mRNA-1;Parent=Msa1146420;Name=Msa1146420-mRNA-1;_AED=0.53;_eAED=0.55;_QI=0|0|0|0.5|1|1|2|0|155 |
chr7_4 | exon | 24024460 | 24024540 | 24024460 | ID=Msa1146420-mRNA-1:exon:6017;Parent=Msa1146420-mRNA-1 |
chr7_4 | exon | 24022589 | 24022975 | 24022589 | ID=Msa1146420-mRNA-1:exon:6016;Parent=Msa1146420-mRNA-1 |
chr7_4 | CDS | 24024460 | 24024540 | 24024460 | ID=Msa1146420-mRNA-1:cds;Parent=Msa1146420-mRNA-1 |
chr7_4 | CDS | 24022589 | 24022975 | 24022589 | ID=Msa1146420-mRNA-1:cds;Parent=Msa1146420-mRNA-1 |
Gene Sequence |
Protein sequence |