Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146430 | AES78883.1 | 91.419 | 303 | 26 | 0 | 1 | 303 | 1 | 303 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146430 | sp|Q8L3W1|VRN1_ARATH | 26.627 | 338 | 181 | 6 | 13 | 290 | 6 | 336 | 1.43e-30 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146430 | G7KVV6 | 91.419 | 303 | 26 | 0 | 1 | 303 | 1 | 303 | 0.0 | 553 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1146430 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146430 | MtrunA17_Chr7g0233531 | 91.786 | 280 | 23 | 0 | 28 | 307 | 1 | 280 | 0.0 | 510 |
| Msa1146430 | MtrunA17_Chr7g0233561 | 71.914 | 324 | 74 | 3 | 1 | 307 | 6 | 329 | 5.19e-165 | 461 |
| Msa1146430 | MtrunA17_Chr3g0131891 | 69.745 | 314 | 88 | 2 | 1 | 307 | 7 | 320 | 1.31e-160 | 451 |
| Msa1146430 | MtrunA17_Chr7g0233541 | 69.463 | 298 | 72 | 5 | 28 | 307 | 1 | 297 | 1.52e-144 | 409 |
| Msa1146430 | MtrunA17_Chr7g0233521 | 66.216 | 296 | 68 | 7 | 28 | 307 | 1 | 280 | 5.29e-132 | 376 |
| Msa1146430 | MtrunA17_Chr7g0233571 | 57.944 | 214 | 70 | 5 | 7 | 201 | 4 | 216 | 9.33e-78 | 236 |
| Msa1146430 | MtrunA17_Chr8g0390841 | 35.127 | 316 | 148 | 8 | 11 | 290 | 37 | 331 | 2.52e-48 | 169 |
| Msa1146430 | MtrunA17_Chr8g0390841 | 25.175 | 286 | 197 | 9 | 13 | 290 | 242 | 518 | 9.35e-14 | 71.6 |
| Msa1146430 | MtrunA17_Chr1g0208771 | 33.444 | 302 | 151 | 8 | 29 | 297 | 13 | 297 | 6.38e-46 | 161 |
| Msa1146430 | MtrunA17_Chr1g0163071 | 33.115 | 305 | 158 | 7 | 28 | 297 | 1 | 294 | 9.23e-45 | 154 |
| Msa1146430 | MtrunA17_Chr3g0103181 | 33.569 | 283 | 173 | 8 | 10 | 289 | 9 | 279 | 5.59e-39 | 138 |
| Msa1146430 | MtrunA17_Chr1g0163261 | 31.667 | 300 | 180 | 7 | 10 | 298 | 6 | 291 | 9.57e-35 | 128 |
| Msa1146430 | MtrunA17_Chr3g0103191 | 34.673 | 199 | 116 | 4 | 10 | 200 | 9 | 201 | 1.01e-33 | 124 |
| Msa1146430 | MtrunA17_Chr1g0171611 | 33.333 | 282 | 163 | 9 | 10 | 288 | 6 | 265 | 1.89e-33 | 124 |
| Msa1146430 | MtrunA17_Chr1g0163231 | 30.282 | 284 | 181 | 7 | 10 | 288 | 6 | 277 | 1.31e-32 | 122 |
| Msa1146430 | MtrunA17_Chr1g0163181 | 30.847 | 295 | 179 | 8 | 22 | 298 | 14 | 301 | 6.24e-31 | 120 |
| Msa1146430 | MtrunA17_Chr3g0103171 | 29.478 | 268 | 174 | 9 | 29 | 289 | 6 | 265 | 7.35e-30 | 114 |
| Msa1146430 | MtrunA17_Chr5g0419201 | 36.000 | 175 | 97 | 3 | 13 | 175 | 16 | 187 | 6.41e-29 | 109 |
| Msa1146430 | MtrunA17_Chr3g0103151 | 49.038 | 104 | 51 | 1 | 10 | 113 | 9 | 110 | 2.75e-28 | 107 |
| Msa1146430 | MtrunA17_Chr1g0163221 | 31.034 | 290 | 181 | 8 | 11 | 289 | 9 | 290 | 3.55e-28 | 111 |
| Msa1146430 | MtrunA17_Chr1g0163251 | 29.352 | 293 | 187 | 8 | 13 | 298 | 9 | 288 | 3.85e-27 | 109 |
| Msa1146430 | MtrunA17_Chr1g0163201 | 31.522 | 276 | 166 | 8 | 29 | 290 | 19 | 285 | 1.34e-26 | 108 |
| Msa1146430 | MtrunA17_Chr4g0067431 | 29.276 | 304 | 185 | 9 | 11 | 289 | 13 | 311 | 9.37e-26 | 104 |
| Msa1146430 | MtrunA17_Chr3g0077451 | 27.341 | 267 | 155 | 5 | 27 | 293 | 10 | 237 | 7.85e-24 | 97.4 |
| Msa1146430 | MtrunA17_Chr1g0154131 | 28.522 | 291 | 179 | 8 | 11 | 282 | 182 | 462 | 9.71e-24 | 100 |
| Msa1146430 | MtrunA17_Chr1g0154131 | 27.737 | 137 | 83 | 2 | 11 | 132 | 24 | 159 | 1.50e-11 | 64.7 |
| Msa1146430 | MtrunA17_Chr1g0154161 | 26.266 | 316 | 179 | 10 | 11 | 297 | 28 | 318 | 6.69e-23 | 96.7 |
| Msa1146430 | MtrunA17_Chr3g0077411 | 29.352 | 293 | 165 | 11 | 11 | 293 | 260 | 520 | 8.60e-23 | 98.2 |
| Msa1146430 | MtrunA17_Chr3g0077411 | 32.673 | 101 | 68 | 0 | 12 | 112 | 24 | 124 | 3.85e-16 | 78.6 |
| Msa1146430 | MtrunA17_Chr6g0467351 | 36.364 | 165 | 92 | 3 | 11 | 174 | 13 | 165 | 2.41e-22 | 93.2 |
| Msa1146430 | MtrunA17_Chr5g0429931 | 27.957 | 279 | 143 | 9 | 29 | 293 | 11 | 245 | 1.04e-21 | 92.0 |
| Msa1146430 | MtrunA17_Chr1g0154171 | 25.000 | 328 | 191 | 8 | 11 | 289 | 21 | 342 | 1.85e-21 | 93.2 |
| Msa1146430 | MtrunA17_Chr1g0154191 | 25.000 | 340 | 186 | 8 | 11 | 288 | 20 | 352 | 4.44e-21 | 92.4 |
| Msa1146430 | MtrunA17_Chr1g0162441 | 41.414 | 99 | 58 | 0 | 13 | 111 | 7 | 105 | 5.26e-21 | 92.8 |
| Msa1146430 | MtrunA17_Chr1g0162441 | 29.197 | 137 | 91 | 2 | 160 | 296 | 268 | 398 | 2.26e-13 | 70.1 |
| Msa1146430 | MtrunA17_Chr3g0077461 | 29.537 | 281 | 144 | 9 | 4 | 281 | 230 | 459 | 1.12e-20 | 92.0 |
| Msa1146430 | MtrunA17_Chr3g0077461 | 29.907 | 107 | 74 | 1 | 29 | 134 | 23 | 129 | 7.80e-14 | 71.6 |
| Msa1146430 | MtrunA17_Chr1g0163131 | 27.331 | 311 | 176 | 8 | 7 | 286 | 12 | 303 | 2.81e-20 | 89.0 |
| Msa1146430 | MtrunA17_Chr4g0033961 | 38.095 | 105 | 63 | 1 | 13 | 115 | 6 | 110 | 2.17e-19 | 87.8 |
| Msa1146430 | MtrunA17_Chr4g0033961 | 31.618 | 136 | 87 | 2 | 160 | 295 | 264 | 393 | 2.05e-14 | 73.2 |
| Msa1146430 | MtrunA17_Chr3g0103201 | 28.879 | 232 | 143 | 9 | 68 | 289 | 1 | 220 | 3.78e-19 | 84.3 |
| Msa1146430 | MtrunA17_Chr1g0163101 | 36.923 | 130 | 77 | 3 | 8 | 135 | 12 | 138 | 9.17e-19 | 82.4 |
| Msa1146430 | MtrunA17_Chr1g0154151 | 24.062 | 320 | 174 | 8 | 16 | 289 | 14 | 310 | 9.26e-18 | 82.4 |
| Msa1146430 | MtrunA17_Chr3g0077431 | 27.848 | 237 | 132 | 5 | 57 | 293 | 1 | 198 | 7.95e-17 | 77.4 |
| Msa1146430 | MtrunA17_Chr1g0162411 | 38.384 | 99 | 59 | 1 | 13 | 111 | 7 | 103 | 2.43e-16 | 79.0 |
| Msa1146430 | MtrunA17_Chr1g0163141 | 40.594 | 101 | 52 | 3 | 27 | 127 | 9 | 101 | 3.49e-16 | 75.5 |
| Msa1146430 | MtrunA17_Chr1g0163121 | 31.333 | 150 | 83 | 4 | 27 | 176 | 9 | 138 | 4.14e-16 | 73.9 |
| Msa1146430 | MtrunA17_Chr4g0009491 | 27.536 | 207 | 122 | 5 | 12 | 217 | 224 | 403 | 1.39e-15 | 76.6 |
| Msa1146430 | MtrunA17_Chr4g0009491 | 30.579 | 121 | 83 | 1 | 27 | 146 | 11 | 131 | 2.56e-14 | 73.2 |
| Msa1146430 | MtrunA17_Chr1g0163061 | 40.952 | 105 | 61 | 1 | 11 | 114 | 13 | 117 | 2.18e-15 | 74.7 |
| Msa1146430 | MtrunA17_Chr3g0077381 | 32.203 | 118 | 71 | 2 | 27 | 144 | 34 | 142 | 2.29e-15 | 76.3 |
| Msa1146430 | MtrunA17_Chr3g0077381 | 27.317 | 205 | 125 | 5 | 12 | 214 | 246 | 428 | 8.21e-14 | 71.6 |
| Msa1146430 | MtrunA17_Chr1g0163241 | 37.000 | 100 | 61 | 1 | 29 | 128 | 23 | 120 | 2.93e-15 | 72.4 |
| Msa1146430 | MtrunA17_Chr3g0077421 | 27.197 | 239 | 132 | 7 | 57 | 293 | 1 | 199 | 7.10e-15 | 72.0 |
| Msa1146430 | MtrunA17_Chr3g0077441 | 27.197 | 239 | 132 | 7 | 57 | 293 | 1 | 199 | 7.10e-15 | 72.0 |
| Msa1146430 | MtrunA17_Chr1g0163191 | 37.037 | 108 | 60 | 2 | 22 | 129 | 14 | 113 | 7.53e-15 | 70.9 |
| Msa1146430 | MtrunA17_Chr3g0077361 | 23.134 | 268 | 151 | 5 | 12 | 277 | 39 | 253 | 1.67e-14 | 73.9 |
| Msa1146430 | MtrunA17_Chr1g0154211 | 36.559 | 93 | 58 | 1 | 11 | 103 | 21 | 112 | 4.12e-14 | 72.4 |
| Msa1146430 | MtrunA17_Chr1g0154251 | 36.559 | 93 | 58 | 1 | 11 | 103 | 25 | 116 | 4.36e-14 | 72.4 |
| Msa1146430 | MtrunA17_Chr1g0154101 | 37.634 | 93 | 56 | 2 | 11 | 103 | 182 | 272 | 1.11e-13 | 71.6 |
| Msa1146430 | MtrunA17_Chr1g0154101 | 35.870 | 92 | 59 | 0 | 11 | 102 | 23 | 114 | 1.60e-13 | 71.2 |
| Msa1146430 | MtrunA17_Chr1g0154241 | 35.052 | 97 | 62 | 1 | 11 | 107 | 20 | 115 | 9.40e-13 | 67.4 |
| Msa1146430 | MtrunA17_Chr6g0476181 | 38.710 | 93 | 54 | 2 | 28 | 120 | 1 | 90 | 1.76e-12 | 64.3 |
| Msa1146430 | MtrunA17_Chr1g0163081 | 36.842 | 95 | 57 | 2 | 28 | 122 | 5 | 96 | 3.73e-12 | 63.2 |
| Msa1146430 | MtrunA17_Chr1g0154071 | 35.556 | 90 | 57 | 1 | 14 | 103 | 157 | 245 | 3.89e-12 | 66.6 |
| Msa1146430 | MtrunA17_Chr1g0154071 | 31.959 | 97 | 65 | 1 | 11 | 107 | 26 | 121 | 1.38e-11 | 65.1 |
| Msa1146430 | MtrunA17_Chr1g0154111 | 35.870 | 92 | 59 | 0 | 11 | 102 | 24 | 115 | 1.33e-11 | 65.1 |
| Msa1146430 | MtrunA17_Chr1g0162161 | 35.955 | 89 | 54 | 2 | 28 | 116 | 3 | 88 | 1.37e-11 | 62.0 |
| Msa1146430 | MtrunA17_Chr1g0154041 | 32.673 | 101 | 67 | 1 | 8 | 108 | 11 | 110 | 2.11e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146430 | AT3G18990.2 | 26.686 | 341 | 183 | 6 | 13 | 293 | 6 | 339 | 1.05e-31 | 122 |
| Msa1146430 | AT3G18990.1 | 26.627 | 338 | 181 | 6 | 13 | 290 | 6 | 336 | 1.45e-31 | 120 |
| Msa1146430 | AT4G01580.1 | 43.269 | 104 | 59 | 0 | 13 | 116 | 30 | 133 | 1.34e-22 | 93.2 |
| Msa1146430 | AT1G49475.1 | 40.517 | 116 | 68 | 1 | 13 | 128 | 34 | 148 | 3.09e-22 | 92.4 |
| Msa1146430 | AT4G33280.1 | 27.900 | 319 | 183 | 15 | 11 | 297 | 23 | 326 | 1.11e-21 | 94.0 |
| Msa1146430 | AT3G18960.2 | 34.211 | 152 | 84 | 2 | 13 | 148 | 30 | 181 | 2.30e-21 | 90.1 |
| Msa1146430 | AT3G18960.1 | 34.211 | 152 | 84 | 2 | 13 | 148 | 30 | 181 | 3.97e-21 | 89.7 |
| Msa1146430 | AT3G18960.3 | 35.294 | 136 | 72 | 2 | 29 | 148 | 9 | 144 | 7.15e-18 | 80.1 |
| Msa1146430 | AT3G53310.1 | 33.333 | 102 | 63 | 2 | 3 | 104 | 5 | 101 | 7.42e-12 | 65.1 |
Find 40 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGCTAACTCCTTTGAATT+TGG | 0.175508 | 7_4:-24036360 | Msa1146430:CDS |
| TGGAAAATGGAAATTAAATT+TGG | 0.234349 | 7_4:-24036628 | Msa1146430:CDS |
| AGAAAATTTGTGGAGAAATA+TGG | 0.268462 | 7_4:-24036693 | Msa1146430:CDS |
| GTCTTTAGACATGTTTCTTT+TGG | 0.282527 | 7_4:+24036660 | None:intergenic |
| AGACTCCAAATGGTGGAAAA+TGG | 0.283126 | 7_4:-24036641 | Msa1146430:CDS |
| CAAGGAAATGAATCTCTAAA+TGG | 0.329233 | 7_4:-24036411 | Msa1146430:CDS |
| AGTAGTAGTTGTGTTAAAGT+TGG | 0.371498 | 7_4:-24036336 | Msa1146430:CDS |
| AGGTGTTAAATGAAGGAGTT+TGG | 0.387476 | 7_4:-24035647 | Msa1146430:CDS |
| TGGTAATAGACACTTTGATT+TGG | 0.391800 | 7_4:-24035697 | Msa1146430:CDS |
| CAGAATATACCACGTATGTT+TGG | 0.412403 | 7_4:-24035717 | Msa1146430:CDS |
| GATGATGCCAAGAAAATTTG+TGG | 0.418421 | 7_4:-24036703 | Msa1146430:CDS |
| GTAGTAGTTGTGTTAAAGTT+GGG | 0.429796 | 7_4:-24036335 | Msa1146430:CDS |
| AGATTCATTTCCTTGATCAA+TGG | 0.441958 | 7_4:+24036419 | None:intergenic |
| ATCAAATTGTAGTCCTGTAC+TGG | 0.447350 | 7_4:+24035599 | None:intergenic |
| TGGCAAGGTATGGTTTGAAA+AGG | 0.450397 | 7_4:-24036595 | Msa1146430:CDS |
| ATGAAGGAGTTTGGCCTACA+AGG | 0.459083 | 7_4:-24035638 | Msa1146430:CDS |
| CGCATGACAACAACAAATGA+TGG | 0.473085 | 7_4:+24036076 | None:intergenic |
| AAAGGCTTACAAGCTTTCCT+TGG | 0.474678 | 7_4:+24037490 | None:intergenic |
| TTTGATTTGGATAAGAAAAG+AGG | 0.493087 | 7_4:-24035684 | Msa1146430:CDS |
| CATGGCTAGTGAAATTTATG+AGG | 0.497255 | 7_4:-24037559 | Msa1146430:CDS |
| ACATGTCTAAAGACTCCAAA+TGG | 0.505252 | 7_4:-24036651 | Msa1146430:CDS |
| GAGGACAATAACTTGAAAGT+TGG | 0.523457 | 7_4:-24035549 | Msa1146430:CDS |
| TCTAAAGATATGAACAATGA+AGG | 0.524509 | 7_4:+24035485 | None:intergenic |
| TTACAAGCTTTCCTTGGTGA+AGG | 0.528265 | 7_4:+24037496 | None:intergenic |
| AGGTATGGTTTGAAAAGGGT+TGG | 0.528620 | 7_4:-24036590 | Msa1146430:CDS |
| TTCCTGATAGAAAACCTTGT+AGG | 0.540464 | 7_4:+24035624 | None:intergenic |
| GGCAAGGTATGGTTTGAAAA+GGG | 0.548981 | 7_4:-24036594 | Msa1146430:CDS |
| TCTATCAGGAAGTCCAGTAC+AGG | 0.551024 | 7_4:-24035612 | Msa1146430:CDS |
| ACTACTACTTCCAAATTCAA+AGG | 0.556173 | 7_4:+24036350 | None:intergenic |
| TGATATCACAAGTGGATGGA+AGG | 0.558355 | 7_4:-24035580 | Msa1146430:CDS |
| TGTTGAACATAGATTTCTGA+TGG | 0.558556 | 7_4:-24036044 | Msa1146430:intron |
| ATATGTACCTCAAAATTGGA+AGG | 0.569214 | 7_4:+24036504 | None:intergenic |
| GAGCATCACTCTCTAGCTCA+TGG | 0.577825 | 7_4:-24036555 | Msa1146430:CDS |
| CTACAATTTGATATCACAAG+TGG | 0.598375 | 7_4:-24035588 | Msa1146430:CDS |
| AATTTGATATCACAAGTGGA+TGG | 0.625506 | 7_4:-24035584 | Msa1146430:CDS |
| AAATCACAAAAGAAGTCCAA+AGG | 0.633010 | 7_4:-24036312 | Msa1146430:intron |
| TGTCTAAAGACTCCAAATGG+TGG | 0.636064 | 7_4:-24036648 | Msa1146430:CDS |
| TGGATGGAAGGCATTTGCAG+AGG | 0.673309 | 7_4:-24035568 | Msa1146430:CDS |
| CTTGCTCAAAACCTTCACCA+AGG | 0.698372 | 7_4:-24037507 | Msa1146430:CDS |
| TGTCTATTACCAAACATACG+TGG | 0.737084 | 7_4:+24035708 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CCAAAAAATACATAAAATTA+AGG | + | chr7_4:24035778-24035797 | None:intergenic | 15.0% |
| !!! | CCTTAATTTTATGTATTTTT+TGG | - | chr7_4:24035775-24035794 | Msa1146430:intron | 15.0% |
| !! | TCATATTTAACAATATGAAT+AGG | + | chr7_4:24036043-24036062 | None:intergenic | 15.0% |
| !! | TGTTAAATATGAAAAAATGA+AGG | - | chr7_4:24036051-24036070 | Msa1146430:CDS | 15.0% |
| !! | GTTAAATATGAAAAAATGAA+GGG | - | chr7_4:24036052-24036071 | Msa1146430:CDS | 15.0% |
| !! | CGAAAAATAATATTATGATT+TGG | - | chr7_4:24036160-24036179 | Msa1146430:intron | 15.0% |
| !!! | TAATTATTTTGCATTACTTT+AGG | + | chr7_4:24036218-24036237 | None:intergenic | 15.0% |
| !! | ATTTAAAAATAATTTACCTG+TGG | - | chr7_4:24037060-24037079 | Msa1146430:intron | 15.0% |
| !! | AACATTATCAAAGAATCTAA+AGG | + | chr7_4:24035520-24035539 | None:intergenic | 20.0% |
| !! | AAACTTTAATATTACTTCAC+AGG | - | chr7_4:24035644-24035663 | Msa1146430:CDS | 20.0% |
| !! | ACAAAATTCCCTAATTAAAT+TGG | + | chr7_4:24035993-24036012 | None:intergenic | 20.0% |
| !! | TTATAAAATTTGAATACCGT+AGG | - | chr7_4:24036125-24036144 | Msa1146430:CDS | 20.0% |
| !! | TATAAAATTTGAATACCGTA+GGG | - | chr7_4:24036126-24036145 | Msa1146430:CDS | 20.0% |
| !! | ATCGTACATATCAATATATA+TGG | - | chr7_4:24036248-24036267 | Msa1146430:intron | 20.0% |
| !! | TGGAAAATGGAAATTAAATT+TGG | - | chr7_4:24036361-24036380 | Msa1146430:CDS | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | - | chr7_4:24036374-24036393 | Msa1146430:CDS | 20.0% |
| !! | AAAAATATGTACCTCAAAAT+TGG | + | chr7_4:24036492-24036511 | None:intergenic | 20.0% |
| !!! | CCTTTTTTTTTTTTTACCTT+TGG | + | chr7_4:24036696-24036715 | None:intergenic | 20.0% |
| !! | CCAAAGGTAAAAAAAAAAAA+AGG | - | chr7_4:24036693-24036712 | Msa1146430:CDS | 20.0% |
| !! | GTTAATGAATAAAAAATGTG+TGG | + | chr7_4:24037230-24037249 | None:intergenic | 20.0% |
| ! | ATGATCTTGAAAAAGTGAAT+TGG | + | chr7_4:24035461-24035480 | None:intergenic | 25.0% |
| !!! | ACATGATGTTACTTTGTATT+TGG | - | chr7_4:24035595-24035614 | Msa1146430:CDS | 25.0% |
| !! | AGTTTACTTGCTAAAAATGA+TGG | - | chr7_4:24035812-24035831 | Msa1146430:intron | 25.0% |
| !! | TATTTCTCCACAAATTTTCT+TGG | + | chr7_4:24036296-24036315 | None:intergenic | 25.0% |
| ! | AGAAAATTTGTGGAGAAATA+TGG | - | chr7_4:24036296-24036315 | Msa1146430:intron | 25.0% |
| !! | CTTTTTATCTTCAACTCTTT+TGG | + | chr7_4:24036546-24036565 | None:intergenic | 25.0% |
| ! | TACTAAATTGGAACATTATC+AGG | + | chr7_4:24036762-24036781 | None:intergenic | 25.0% |
| !! | TGATAATGTTCCAATTTAGT+AGG | - | chr7_4:24036761-24036780 | Msa1146430:intron | 25.0% |
| !! | TCTAGTCTTTAGTAGATTAA+GGG | - | chr7_4:24037017-24037036 | Msa1146430:intron | 25.0% |
| !! | AAATAATTTACCTGTGGTTT+TGG | - | chr7_4:24037066-24037085 | Msa1146430:intron | 25.0% |
| !! | CATTCGATTTTTCTTTTGTT+TGG | - | chr7_4:24037249-24037268 | Msa1146430:intron | 25.0% |
| !!! | TTTGATTTGGATAAGAAAAG+AGG | - | chr7_4:24037305-24037324 | Msa1146430:intron | 25.0% |
| !!! | AAGAGGAGATATTTATTTTC+AGG | - | chr7_4:24037322-24037341 | Msa1146430:intron | 25.0% |
| !!! | TATTTTCAGGTGTTAAATGA+AGG | - | chr7_4:24037335-24037354 | Msa1146430:intron | 25.0% |
| ! | TCTAAAGATATGAACAATGA+AGG | + | chr7_4:24037507-24037526 | None:intergenic | 25.0% |
| AAAATGACTCAATTGCTTTC+AGG | + | chr7_4:24035729-24035748 | None:intergenic | 30.0% | |
| TAAAAATGATGGTTGCTCTT+AGG | - | chr7_4:24035823-24035842 | Msa1146430:intron | 30.0% | |
| ! | TGGTCTTGCCAATTTAATTA+GGG | - | chr7_4:24035982-24036001 | Msa1146430:intron | 30.0% |
| ATGAAAAAATGAAGGGTTTC+TGG | - | chr7_4:24036059-24036078 | Msa1146430:CDS | 30.0% | |
| ! | GTCTTTAGACATGTTTCTTT+TGG | + | chr7_4:24036332-24036351 | None:intergenic | 30.0% |
| ! | AATTTCCATTTTCCACCATT+TGG | + | chr7_4:24036356-24036375 | None:intergenic | 30.0% |
| CATATCTAAAAAGCAGAAGA+TGG | + | chr7_4:24036460-24036479 | None:intergenic | 30.0% | |
| ! | TGAAAAACCTTCCAATTTTG+AGG | - | chr7_4:24036478-24036497 | Msa1146430:CDS | 30.0% |
| ATATGTACCTCAAAATTGGA+AGG | + | chr7_4:24036488-24036507 | None:intergenic | 30.0% | |
| !! | TATTTTTGAAAAGAGTGCGT+TGG | - | chr7_4:24036505-24036524 | Msa1146430:CDS | 30.0% |
| ! | TATCTTCAACTCTTTTGGTA+GGG | + | chr7_4:24036541-24036560 | None:intergenic | 30.0% |
| ! | TTATCTTCAACTCTTTTGGT+AGG | + | chr7_4:24036542-24036561 | None:intergenic | 30.0% |
| AAAAAGATCTCCATTGATCA+AGG | - | chr7_4:24036560-24036579 | Msa1146430:CDS | 30.0% | |
| AGATTCATTTCCTTGATCAA+TGG | + | chr7_4:24036573-24036592 | None:intergenic | 30.0% | |
| CAAGGAAATGAATCTCTAAA+TGG | - | chr7_4:24036578-24036597 | Msa1146430:CDS | 30.0% | |
| AAAGCTAACTCCTTTGAATT+TGG | - | chr7_4:24036629-24036648 | Msa1146430:CDS | 30.0% | |
| ACTACTACTTCCAAATTCAA+AGG | + | chr7_4:24036642-24036661 | None:intergenic | 30.0% | |
| AGTAGTAGTTGTGTTAAAGT+TGG | - | chr7_4:24036653-24036672 | Msa1146430:CDS | 30.0% | |
| GTAGTAGTTGTGTTAAAGTT+GGG | - | chr7_4:24036654-24036673 | Msa1146430:CDS | 30.0% | |
| AAATCACAAAAGAAGTCCAA+AGG | - | chr7_4:24036677-24036696 | Msa1146430:CDS | 30.0% | |
| ACATGAAATGCCTACTAAAT+TGG | + | chr7_4:24036774-24036793 | None:intergenic | 30.0% | |
| TGCAAAATTGGAACATTATC+AGG | + | chr7_4:24036821-24036840 | None:intergenic | 30.0% | |
| !! | TGATAATGTTCCAATTTTGC+AGG | - | chr7_4:24036820-24036839 | Msa1146430:intron | 30.0% |
| TGTTGAACATAGATTTCTGA+TGG | - | chr7_4:24036945-24036964 | Msa1146430:intron | 30.0% | |
| ! | CTAGAGAAAGATTTGGTTAT+TGG | + | chr7_4:24037002-24037021 | None:intergenic | 30.0% |
| CTAAAGACTAGAGAAAGATT+TGG | + | chr7_4:24037009-24037028 | None:intergenic | 30.0% | |
| ! | CTCTAGTCTTTAGTAGATTA+AGG | - | chr7_4:24037016-24037035 | Msa1146430:intron | 30.0% |
| ! | CTAGTCTTTAGTAGATTAAG+GGG | - | chr7_4:24037018-24037037 | Msa1146430:intron | 30.0% |
| TGGTAATAGACACTTTGATT+TGG | - | chr7_4:24037292-24037311 | Msa1146430:intron | 30.0% | |
| CTACAATTTGATATCACAAG+TGG | - | chr7_4:24037401-24037420 | Msa1146430:intron | 30.0% | |
| AATTTGATATCACAAGTGGA+TGG | - | chr7_4:24037405-24037424 | Msa1146430:intron | 30.0% | |
| CCTTCTGTTATGTCATCATA+AGG | + | chr7_4:24035674-24035693 | None:intergenic | 35.0% | |
| CCTTATGATGACATAACAGA+AGG | - | chr7_4:24035671-24035690 | Msa1146430:CDS | 35.0% | |
| ! | GCTGCTTTAATTAGAAACTG+AGG | - | chr7_4:24035876-24035895 | Msa1146430:intron | 35.0% |
| GCTTTAATTAGAAACTGAGG+AGG | - | chr7_4:24035879-24035898 | Msa1146430:intron | 35.0% | |
| AGCTTGAAACACATCAGATT+GGG | + | chr7_4:24035922-24035941 | None:intergenic | 35.0% | |
| TAGCTTGAAACACATCAGAT+TGG | + | chr7_4:24035923-24035942 | None:intergenic | 35.0% | |
| AATCTGATGTGTTTCAAGCT+AGG | - | chr7_4:24035922-24035941 | Msa1146430:intron | 35.0% | |
| !! | CTGGTCTTGCCAATTTAATT+AGG | - | chr7_4:24035981-24036000 | Msa1146430:intron | 35.0% |
| GGATGTATGAAAAGAGAGAA+GGG | + | chr7_4:24036022-24036041 | None:intergenic | 35.0% | |
| AGGATGTATGAAAAGAGAGA+AGG | + | chr7_4:24036023-24036042 | None:intergenic | 35.0% | |
| ! | AAAAAATGAAGGGTTTCTGG+CGG | - | chr7_4:24036062-24036081 | Msa1146430:CDS | 35.0% |
| GATGATGCCAAGAAAATTTG+TGG | - | chr7_4:24036286-24036305 | Msa1146430:intron | 35.0% | |
| ACATGTCTAAAGACTCCAAA+TGG | - | chr7_4:24036338-24036357 | Msa1146430:CDS | 35.0% | |
| TTTGGTAAAAAGTGATGGCA+AGG | - | chr7_4:24036379-24036398 | Msa1146430:CDS | 35.0% | |
| TAAAAAGTGATGGCAAGGTA+TGG | - | chr7_4:24036384-24036403 | Msa1146430:CDS | 35.0% | |
| !! | CACTTGTTTTCCTGCAAAAT+TGG | + | chr7_4:24036833-24036852 | None:intergenic | 35.0% |
| CTTAAGAGAAACACACTATG+AGG | + | chr7_4:24037099-24037118 | None:intergenic | 35.0% | |
| CTCATAGTGTGTTTCTCTTA+AGG | - | chr7_4:24037097-24037116 | Msa1146430:intron | 35.0% | |
| CAGAATATACCACGTATGTT+TGG | - | chr7_4:24037272-24037291 | Msa1146430:intron | 35.0% | |
| TGTCTATTACCAAACATACG+TGG | + | chr7_4:24037284-24037303 | None:intergenic | 35.0% | |
| AGGTGTTAAATGAAGGAGTT+TGG | - | chr7_4:24037342-24037361 | Msa1146430:intron | 35.0% | |
| TTCCTGATAGAAAACCTTGT+AGG | + | chr7_4:24037368-24037387 | None:intergenic | 35.0% | |
| ATCAAATTGTAGTCCTGTAC+TGG | + | chr7_4:24037393-24037412 | None:intergenic | 35.0% | |
| GAGGACAATAACTTGAAAGT+TGG | - | chr7_4:24037440-24037459 | Msa1146430:intron | 35.0% | |
| TTACAAGCTTTCCTTGGTGA+AGG | + | chr7_4:24035496-24035515 | None:intergenic | 40.0% | |
| AAAGGCTTACAAGCTTTCCT+TGG | + | chr7_4:24035502-24035521 | None:intergenic | 40.0% | |
| !! | GCAATTGAGTCATTTTACCC+CGG | - | chr7_4:24035733-24035752 | Msa1146430:intron | 40.0% |
| GATGTGTTTCAAGCTAGGTT+AGG | - | chr7_4:24035927-24035946 | Msa1146430:intron | 40.0% | |
| AGTTTCACACGCCACAAATT+TGG | + | chr7_4:24035956-24035975 | None:intergenic | 40.0% | |
| GTATGAAAAGAGAGAAGGGT+GGG | + | chr7_4:24036018-24036037 | None:intergenic | 40.0% | |
| TGTATGAAAAGAGAGAAGGG+TGG | + | chr7_4:24036019-24036038 | None:intergenic | 40.0% | |
| TGTCTAAAGACTCCAAATGG+TGG | - | chr7_4:24036341-24036360 | Msa1146430:CDS | 40.0% | |
| ! | AGACTCCAAATGGTGGAAAA+TGG | - | chr7_4:24036348-24036367 | Msa1146430:CDS | 40.0% |
| TGGCAAGGTATGGTTTGAAA+AGG | - | chr7_4:24036394-24036413 | Msa1146430:CDS | 40.0% | |
| GGCAAGGTATGGTTTGAAAA+GGG | - | chr7_4:24036395-24036414 | Msa1146430:CDS | 40.0% | |
| AGGTATGGTTTGAAAAGGGT+TGG | - | chr7_4:24036399-24036418 | Msa1146430:CDS | 40.0% | |
| CGCATGACAACAACAAATGA+TGG | + | chr7_4:24036916-24036935 | None:intergenic | 40.0% | |
| TGTGTTTCTCTTAAGGTCTC+AGG | - | chr7_4:24037104-24037123 | Msa1146430:intron | 40.0% | |
| GTCTCAGGTAAGATTTACCT+CGG | - | chr7_4:24037119-24037138 | Msa1146430:intron | 40.0% | |
| !! | GATTTACCTCGGTGCAATTT+TGG | - | chr7_4:24037130-24037149 | Msa1146430:intron | 40.0% |
| TGATATCACAAGTGGATGGA+AGG | - | chr7_4:24037409-24037428 | Msa1146430:intron | 40.0% | |
| CTTGCTCAAAACCTTCACCA+AGG | - | chr7_4:24035482-24035501 | Msa1146430:CDS | 45.0% | |
| !! | CATTTTACCCCGGTTCGAAT+TGG | - | chr7_4:24035743-24035762 | Msa1146430:intron | 45.0% |
| AGGTTAGGCCACCAAATTTG+TGG | - | chr7_4:24035942-24035961 | Msa1146430:intron | 45.0% | |
| TTCACACGCCACAAATTTGG+TGG | + | chr7_4:24035953-24035972 | None:intergenic | 45.0% | |
| !!! | GGCGGTGTTTTAACGTGTTT+TGG | - | chr7_4:24036080-24036099 | Msa1146430:CDS | 45.0% |
| !! | TTACCTCGGTGCAATTTTGG+TGG | - | chr7_4:24037133-24037152 | Msa1146430:intron | 45.0% |
| ATACCACCAAAATTGCACCG+AGG | + | chr7_4:24037139-24037158 | None:intergenic | 45.0% | |
| ATGAAGGAGTTTGGCCTACA+AGG | - | chr7_4:24037351-24037370 | Msa1146430:intron | 45.0% | |
| ! | GGCCTACAAGGTTTTCTATC+AGG | - | chr7_4:24037363-24037382 | Msa1146430:intron | 45.0% |
| TCTATCAGGAAGTCCAGTAC+AGG | - | chr7_4:24037377-24037396 | Msa1146430:intron | 45.0% | |
| TCAAGCGAGCCAATTCGAAC+CGG | + | chr7_4:24035755-24035774 | None:intergenic | 50.0% | |
| TGGCGTGTGAAACTGTGAAC+TGG | - | chr7_4:24035962-24035981 | Msa1146430:intron | 50.0% | |
| TTCGTTTCTCTCACGCCCTA+CGG | + | chr7_4:24036144-24036163 | None:intergenic | 50.0% | |
| ! | GAGCATCACTCTCTAGCTCA+TGG | - | chr7_4:24036434-24036453 | Msa1146430:CDS | 50.0% |
| ! | AGGTCTGAAGCCAAAACCAC+AGG | + | chr7_4:24037079-24037098 | None:intergenic | 50.0% |
| !! | TGGATGGAAGGCATTTGCAG+AGG | - | chr7_4:24037421-24037440 | Msa1146430:intron | 50.0% |
| AAGCGAGCCAATTCGAACCG+GGG | + | chr7_4:24035753-24035772 | None:intergenic | 55.0% | |
| CAAGCGAGCCAATTCGAACC+GGG | + | chr7_4:24035754-24035773 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 24035431 | 24037580 | 24035431 | ID=Msa1146430;Name=Msa1146430 |
| chr7_4 | mRNA | 24035431 | 24037580 | 24035431 | ID=Msa1146430-mRNA-1;Parent=Msa1146430;Name=Msa1146430-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|4|0|307 |
| chr7_4 | exon | 24037500 | 24037580 | 24037500 | ID=Msa1146430-mRNA-1:exon:6006;Parent=Msa1146430-mRNA-1 |
| chr7_4 | exon | 24036313 | 24036724 | 24036313 | ID=Msa1146430-mRNA-1:exon:6005;Parent=Msa1146430-mRNA-1 |
| chr7_4 | exon | 24036045 | 24036169 | 24036045 | ID=Msa1146430-mRNA-1:exon:6004;Parent=Msa1146430-mRNA-1 |
| chr7_4 | exon | 24035431 | 24035736 | 24035431 | ID=Msa1146430-mRNA-1:exon:6003;Parent=Msa1146430-mRNA-1 |
| chr7_4 | CDS | 24037500 | 24037580 | 24037500 | ID=Msa1146430-mRNA-1:cds;Parent=Msa1146430-mRNA-1 |
| chr7_4 | CDS | 24036313 | 24036724 | 24036313 | ID=Msa1146430-mRNA-1:cds;Parent=Msa1146430-mRNA-1 |
| chr7_4 | CDS | 24036045 | 24036169 | 24036045 | ID=Msa1146430-mRNA-1:cds;Parent=Msa1146430-mRNA-1 |
| chr7_4 | CDS | 24035431 | 24035736 | 24035431 | ID=Msa1146430-mRNA-1:cds;Parent=Msa1146430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
