Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146480 | AES73017.1 | 67.097 | 310 | 84 | 4 | 1 | 293 | 1 | 309 | 3.41e-138 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146480 | sp|Q8L3W1|VRN1_ARATH | 30.383 | 339 | 160 | 6 | 13 | 283 | 6 | 336 | 4.40e-38 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146480 | G7J3B6 | 67.097 | 310 | 84 | 4 | 1 | 293 | 1 | 309 | 1.63e-138 | 404 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1146480 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146480 | MtrunA17_Chr3g0131891 | 67.208 | 308 | 85 | 4 | 1 | 293 | 7 | 313 | 1.16e-141 | 402 |
| Msa1146480 | MtrunA17_Chr7g0233561 | 62.893 | 318 | 92 | 4 | 1 | 293 | 6 | 322 | 3.51e-139 | 396 |
| Msa1146480 | MtrunA17_Chr7g0233531 | 63.214 | 280 | 80 | 4 | 29 | 293 | 2 | 273 | 6.04e-115 | 333 |
| Msa1146480 | MtrunA17_Chr7g0233541 | 58.163 | 294 | 95 | 6 | 29 | 296 | 2 | 293 | 1.38e-106 | 312 |
| Msa1146480 | MtrunA17_Chr7g0233521 | 57.292 | 288 | 84 | 3 | 29 | 293 | 2 | 273 | 4.36e-105 | 308 |
| Msa1146480 | MtrunA17_Chr7g0233571 | 55.556 | 225 | 69 | 5 | 1 | 198 | 1 | 221 | 3.86e-73 | 224 |
| Msa1146480 | MtrunA17_Chr8g0390841 | 35.144 | 313 | 145 | 5 | 11 | 283 | 37 | 331 | 2.19e-51 | 176 |
| Msa1146480 | MtrunA17_Chr1g0208771 | 35.517 | 290 | 140 | 6 | 29 | 283 | 13 | 290 | 7.19e-47 | 163 |
| Msa1146480 | MtrunA17_Chr1g0163071 | 34.007 | 297 | 143 | 8 | 29 | 283 | 2 | 287 | 1.43e-46 | 159 |
| Msa1146480 | MtrunA17_Chr3g0103181 | 31.317 | 281 | 175 | 8 | 10 | 282 | 9 | 279 | 3.71e-35 | 128 |
| Msa1146480 | MtrunA17_Chr1g0163181 | 32.226 | 301 | 168 | 8 | 5 | 281 | 3 | 291 | 1.51e-34 | 130 |
| Msa1146480 | MtrunA17_Chr1g0163231 | 31.095 | 283 | 173 | 8 | 10 | 281 | 6 | 277 | 2.95e-32 | 121 |
| Msa1146480 | MtrunA17_Chr1g0171611 | 32.979 | 282 | 157 | 8 | 10 | 281 | 6 | 265 | 4.91e-32 | 120 |
| Msa1146480 | MtrunA17_Chr4g0067431 | 29.967 | 307 | 172 | 9 | 11 | 282 | 13 | 311 | 6.58e-32 | 120 |
| Msa1146480 | MtrunA17_Chr1g0163221 | 30.241 | 291 | 175 | 8 | 11 | 282 | 9 | 290 | 1.24e-31 | 120 |
| Msa1146480 | MtrunA17_Chr1g0163261 | 31.683 | 303 | 185 | 10 | 10 | 300 | 6 | 298 | 2.37e-29 | 113 |
| Msa1146480 | MtrunA17_Chr5g0419201 | 33.929 | 168 | 101 | 3 | 13 | 170 | 16 | 183 | 2.97e-28 | 107 |
| Msa1146480 | MtrunA17_Chr1g0163251 | 34.043 | 282 | 161 | 10 | 13 | 281 | 9 | 278 | 4.08e-28 | 112 |
| Msa1146480 | MtrunA17_Chr3g0103151 | 49.020 | 102 | 50 | 1 | 10 | 111 | 9 | 108 | 1.08e-27 | 105 |
| Msa1146480 | MtrunA17_Chr3g0103171 | 29.630 | 270 | 164 | 9 | 29 | 282 | 6 | 265 | 2.30e-26 | 104 |
| Msa1146480 | MtrunA17_Chr3g0103191 | 30.583 | 206 | 111 | 4 | 10 | 195 | 9 | 202 | 8.47e-26 | 102 |
| Msa1146480 | MtrunA17_Chr1g0163201 | 30.545 | 275 | 163 | 6 | 29 | 283 | 19 | 285 | 1.89e-25 | 104 |
| Msa1146480 | MtrunA17_Chr1g0154161 | 28.671 | 286 | 183 | 6 | 11 | 282 | 28 | 306 | 7.94e-25 | 101 |
| Msa1146480 | MtrunA17_Chr6g0467351 | 40.769 | 130 | 69 | 2 | 11 | 132 | 13 | 142 | 4.48e-24 | 97.8 |
| Msa1146480 | MtrunA17_Chr3g0077451 | 27.132 | 258 | 154 | 6 | 27 | 283 | 10 | 234 | 1.00e-22 | 94.4 |
| Msa1146480 | MtrunA17_Chr4g0033961 | 43.434 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 1.65e-22 | 96.7 |
| Msa1146480 | MtrunA17_Chr4g0033961 | 28.272 | 191 | 126 | 5 | 96 | 285 | 210 | 390 | 3.03e-14 | 72.8 |
| Msa1146480 | MtrunA17_Chr1g0154131 | 29.474 | 285 | 172 | 8 | 11 | 270 | 177 | 457 | 3.14e-22 | 96.3 |
| Msa1146480 | MtrunA17_Chr1g0154131 | 39.583 | 96 | 54 | 1 | 11 | 102 | 19 | 114 | 1.14e-12 | 68.2 |
| Msa1146480 | MtrunA17_Chr5g0429931 | 27.519 | 258 | 158 | 8 | 29 | 283 | 11 | 242 | 1.03e-21 | 91.7 |
| Msa1146480 | MtrunA17_Chr1g0162441 | 44.444 | 99 | 55 | 0 | 13 | 111 | 7 | 105 | 1.17e-21 | 94.4 |
| Msa1146480 | MtrunA17_Chr1g0162441 | 32.283 | 127 | 79 | 3 | 158 | 283 | 272 | 392 | 8.70e-13 | 68.2 |
| Msa1146480 | MtrunA17_Chr3g0077411 | 25.357 | 280 | 178 | 7 | 11 | 282 | 260 | 516 | 1.29e-21 | 94.7 |
| Msa1146480 | MtrunA17_Chr3g0077411 | 30.827 | 133 | 85 | 1 | 12 | 144 | 24 | 149 | 3.50e-18 | 84.7 |
| Msa1146480 | MtrunA17_Chr3g0077461 | 28.185 | 259 | 147 | 5 | 12 | 270 | 236 | 455 | 1.00e-20 | 92.0 |
| Msa1146480 | MtrunA17_Chr3g0077461 | 28.049 | 246 | 116 | 9 | 29 | 270 | 23 | 211 | 1.13e-17 | 83.2 |
| Msa1146480 | MtrunA17_Chr1g0154191 | 23.054 | 334 | 191 | 7 | 11 | 279 | 20 | 352 | 1.12e-18 | 85.5 |
| Msa1146480 | MtrunA17_Chr1g0163061 | 41.905 | 105 | 60 | 1 | 11 | 114 | 13 | 117 | 1.16e-18 | 84.0 |
| Msa1146480 | MtrunA17_Chr1g0163101 | 43.396 | 106 | 57 | 2 | 6 | 111 | 10 | 112 | 1.27e-18 | 81.6 |
| Msa1146480 | MtrunA17_Chr1g0154171 | 24.159 | 327 | 184 | 9 | 11 | 279 | 21 | 341 | 1.92e-18 | 84.7 |
| Msa1146480 | MtrunA17_Chr1g0154111 | 24.370 | 357 | 187 | 11 | 11 | 295 | 24 | 369 | 5.13e-18 | 84.3 |
| Msa1146480 | MtrunA17_Chr1g0154071 | 26.074 | 349 | 185 | 11 | 5 | 288 | 149 | 489 | 9.73e-18 | 83.2 |
| Msa1146480 | MtrunA17_Chr1g0154071 | 32.990 | 97 | 64 | 1 | 11 | 107 | 26 | 121 | 5.09e-12 | 66.2 |
| Msa1146480 | MtrunA17_Chr1g0163131 | 24.834 | 302 | 190 | 8 | 6 | 279 | 11 | 303 | 2.08e-17 | 80.9 |
| Msa1146480 | MtrunA17_Chr4g0009491 | 28.033 | 239 | 121 | 8 | 27 | 262 | 11 | 201 | 3.39e-17 | 81.3 |
| Msa1146480 | MtrunA17_Chr4g0009491 | 35.922 | 103 | 66 | 0 | 12 | 114 | 224 | 326 | 3.59e-16 | 78.6 |
| Msa1146480 | MtrunA17_Chr1g0163191 | 43.434 | 99 | 50 | 2 | 13 | 111 | 9 | 101 | 4.51e-17 | 77.0 |
| Msa1146480 | MtrunA17_Chr1g0154151 | 24.839 | 310 | 175 | 7 | 16 | 279 | 14 | 311 | 7.47e-17 | 79.7 |
| Msa1146480 | MtrunA17_Chr3g0077381 | 33.884 | 121 | 70 | 2 | 27 | 147 | 34 | 144 | 1.10e-16 | 80.1 |
| Msa1146480 | MtrunA17_Chr3g0077381 | 34.951 | 103 | 67 | 0 | 12 | 114 | 246 | 348 | 9.91e-15 | 74.3 |
| Msa1146480 | MtrunA17_Chr1g0163241 | 46.988 | 83 | 42 | 1 | 29 | 111 | 23 | 103 | 2.92e-16 | 75.1 |
| Msa1146480 | MtrunA17_Chr3g0103201 | 27.155 | 232 | 140 | 7 | 68 | 282 | 1 | 220 | 4.08e-16 | 75.9 |
| Msa1146480 | MtrunA17_Chr1g0154101 | 42.708 | 96 | 52 | 1 | 11 | 103 | 177 | 272 | 5.19e-16 | 78.6 |
| Msa1146480 | MtrunA17_Chr1g0154101 | 38.043 | 92 | 57 | 0 | 11 | 102 | 23 | 114 | 8.68e-14 | 71.6 |
| Msa1146480 | MtrunA17_Chr1g0162411 | 40.404 | 99 | 57 | 1 | 13 | 111 | 7 | 103 | 6.43e-16 | 77.8 |
| Msa1146480 | MtrunA17_Chr1g0154211 | 38.710 | 93 | 56 | 1 | 11 | 103 | 21 | 112 | 1.19e-15 | 76.6 |
| Msa1146480 | MtrunA17_Chr3g0077361 | 25.475 | 263 | 144 | 8 | 12 | 270 | 39 | 253 | 2.19e-15 | 76.3 |
| Msa1146480 | MtrunA17_Chr1g0163121 | 46.067 | 89 | 45 | 2 | 27 | 115 | 9 | 94 | 1.24e-14 | 70.1 |
| Msa1146480 | MtrunA17_Chr3g0077431 | 26.754 | 228 | 133 | 6 | 57 | 283 | 1 | 195 | 1.71e-14 | 70.9 |
| Msa1146480 | MtrunA17_Chr1g0154251 | 39.175 | 97 | 55 | 1 | 11 | 103 | 20 | 116 | 3.45e-14 | 72.8 |
| Msa1146480 | MtrunA17_Chr1g0154041 | 34.906 | 106 | 68 | 1 | 8 | 113 | 11 | 115 | 7.22e-14 | 72.0 |
| Msa1146480 | MtrunA17_Chr3g0077421 | 28.814 | 236 | 119 | 10 | 57 | 283 | 1 | 196 | 1.23e-12 | 65.9 |
| Msa1146480 | MtrunA17_Chr3g0077441 | 28.814 | 236 | 119 | 10 | 57 | 283 | 1 | 196 | 1.23e-12 | 65.9 |
| Msa1146480 | MtrunA17_Chr1g0154241 | 34.021 | 97 | 63 | 1 | 11 | 107 | 20 | 115 | 1.88e-12 | 66.2 |
| Msa1146480 | MtrunA17_Chr1g0162161 | 33.028 | 109 | 70 | 2 | 29 | 137 | 4 | 109 | 9.76e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146480 | AT3G18990.1 | 30.383 | 339 | 160 | 6 | 13 | 283 | 6 | 336 | 4.48e-39 | 140 |
| Msa1146480 | AT3G18990.2 | 30.267 | 337 | 163 | 6 | 13 | 283 | 6 | 336 | 1.60e-36 | 134 |
| Msa1146480 | AT1G49475.1 | 42.373 | 118 | 64 | 2 | 13 | 127 | 34 | 150 | 1.53e-24 | 98.2 |
| Msa1146480 | AT4G01580.1 | 39.423 | 104 | 63 | 0 | 13 | 116 | 30 | 133 | 4.00e-23 | 94.4 |
| Msa1146480 | AT3G18960.2 | 38.462 | 104 | 64 | 0 | 13 | 116 | 30 | 133 | 3.66e-22 | 92.0 |
| Msa1146480 | AT3G18960.1 | 38.462 | 104 | 64 | 0 | 13 | 116 | 30 | 133 | 5.51e-22 | 92.0 |
| Msa1146480 | AT4G33280.1 | 27.445 | 317 | 185 | 13 | 12 | 291 | 19 | 327 | 2.19e-19 | 87.4 |
| Msa1146480 | AT3G18960.3 | 42.045 | 88 | 51 | 0 | 29 | 116 | 9 | 96 | 3.27e-18 | 80.9 |
| Msa1146480 | AT1G49480.3 | 31.210 | 157 | 98 | 4 | 129 | 283 | 73 | 221 | 3.82e-14 | 70.9 |
| Msa1146480 | AT1G49480.1 | 31.210 | 157 | 98 | 4 | 129 | 283 | 73 | 221 | 3.82e-14 | 70.9 |
| Msa1146480 | AT1G49480.2 | 31.210 | 157 | 98 | 4 | 129 | 283 | 73 | 221 | 3.82e-14 | 70.9 |
| Msa1146480 | AT4G33280.2 | 36.000 | 100 | 60 | 2 | 12 | 107 | 19 | 118 | 7.64e-13 | 68.2 |
| Msa1146480 | AT4G33280.3 | 36.000 | 100 | 60 | 2 | 12 | 107 | 19 | 118 | 1.33e-12 | 68.2 |
| Msa1146480 | AT3G53310.1 | 34.343 | 99 | 63 | 2 | 6 | 104 | 5 | 101 | 1.04e-11 | 64.7 |
Find 58 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTCAATTATGTGAATT+TGG | 0.174253 | 7_4:+24143500 | Msa1146480:CDS |
| TTCAAGAGTTGTAACTTTCT+TGG | 0.249031 | 7_4:-24143872 | None:intergenic |
| TTGTGTTAAATGGGAGAATT+TGG | 0.268240 | 7_4:+24144350 | Msa1146480:CDS |
| GTCTTCAAACATATAGCTTT+TGG | 0.286206 | 7_4:-24143176 | None:intergenic |
| AAGAAATTTAGAGGCTGAAT+TGG | 0.303435 | 7_4:-24143483 | None:intergenic |
| ACAAATTCCTGGTACTAATA+TGG | 0.307015 | 7_4:+24144489 | Msa1146480:CDS |
| TGCACCCATGACAACATTAA+AGG | 0.314222 | 7_4:-24143926 | None:intergenic |
| AGACTCCAAATGGTGGGAAT+TGG | 0.331245 | 7_4:+24143195 | Msa1146480:CDS |
| ACATAATTGAAGAAATTTAG+AGG | 0.332547 | 7_4:-24143492 | None:intergenic |
| GACACACTTCGATTTAAATA+AGG | 0.338042 | 7_4:+24144309 | Msa1146480:CDS |
| GCTTTCCTTCCTGAAGGCTT+TGG | 0.338823 | 7_4:-24142110 | None:intergenic |
| CTTTCCTTCCTGAAGGCTTT+GGG | 0.349395 | 7_4:-24142109 | None:intergenic |
| AACATTAAAGGATGGATTGC+AGG | 0.351206 | 7_4:-24143914 | None:intergenic |
| AGATTTATTTCCTTGACTAT+TGG | 0.358443 | 7_4:-24143420 | None:intergenic |
| AATTCCCAATTCCCACCATT+TGG | 0.370461 | 7_4:-24143200 | None:intergenic |
| TGCAACTTTGAACAAATTCC+TGG | 0.377873 | 7_4:+24144478 | Msa1146480:CDS |
| GACTCCAAATGGTGGGAATT+GGG | 0.384420 | 7_4:+24143196 | Msa1146480:CDS |
| CATACTTACCCAAAGCCTTC+AGG | 0.408589 | 7_4:+24142101 | Msa1146480:CDS |
| GGTCTGCAAGGTACCTAATC+AGG | 0.409404 | 7_4:+24144371 | Msa1146480:CDS |
| TCAAAAGAGTCGAAGCTAAG+AGG | 0.414524 | 7_4:+24143390 | Msa1146480:CDS |
| TTTATTTCCTTGACTATTGG+AGG | 0.434153 | 7_4:-24143417 | None:intergenic |
| CTGTAGGGGTCATCCTGATT+AGG | 0.446827 | 7_4:-24144384 | None:intergenic |
| TAGACTATACCATCCATGTT+TGG | 0.453267 | 7_4:+24144283 | Msa1146480:intron |
| AAATATGGTTTGAGAAGGGT+TGG | 0.476973 | 7_4:+24143246 | Msa1146480:CDS |
| ATGATCTTGTAAAAGTGTAC+TGG | 0.486793 | 7_4:-24142081 | None:intergenic |
| TCCATCCTTTAATGTTGTCA+TGG | 0.486839 | 7_4:+24143921 | Msa1146480:CDS |
| AGTTCAAATCTTAGTCCTGT+AGG | 0.491677 | 7_4:-24144400 | None:intergenic |
| TTTGTGGAGAAATATGGAAA+AGG | 0.495590 | 7_4:+24143149 | Msa1146480:CDS |
| GTTCAAATCTTAGTCCTGTA+GGG | 0.507569 | 7_4:-24144399 | None:intergenic |
| AATCTTTGATAAGAGTGCCT+TGG | 0.513830 | 7_4:+24143352 | Msa1146480:CDS |
| TTACAAGCTTTCCTTCCTGA+AGG | 0.515452 | 7_4:-24142116 | None:intergenic |
| AATTGTTCAAATCTCAAAGT+AGG | 0.516135 | 7_4:+24144556 | Msa1146480:CDS |
| CTAATCAGGATGACCCCTAC+AGG | 0.520105 | 7_4:+24144385 | Msa1146480:CDS |
| CCATCCTTTAATGTTGTCAT+GGG | 0.521945 | 7_4:+24143922 | Msa1146480:CDS |
| ATATGTTTGAAGACTCCAAA+TGG | 0.536076 | 7_4:+24143185 | Msa1146480:CDS |
| TGGCAAAATATGGTTTGAGA+AGG | 0.537956 | 7_4:+24143241 | Msa1146480:CDS |
| ATTGACAACAACTTGAAAGT+TGG | 0.541944 | 7_4:+24144448 | Msa1146480:CDS |
| ATGGGAGAATTTGGTCTGCA+AGG | 0.542376 | 7_4:+24144359 | Msa1146480:CDS |
| CATATCTGAACACTAGAAGA+TGG | 0.550148 | 7_4:-24143304 | None:intergenic |
| TCTAAAGATGCGAACGTGGA+AGG | 0.562075 | 7_4:-24144512 | None:intergenic |
| CAAAAGAGTCGAAGCTAAGA+GGG | 0.567126 | 7_4:+24143391 | Msa1146480:CDS |
| GATTTGAACTCTCAAGTGGA+TGG | 0.568888 | 7_4:+24144413 | Msa1146480:CDS |
| GAAAGGGTAGTTTATCTCCA+AGG | 0.573689 | 7_4:-24143369 | None:intergenic |
| GATTTGTACCTTAAAATGAG+AGG | 0.576988 | 7_4:-24143333 | None:intergenic |
| CTAAGATTTGAACTCTCAAG+TGG | 0.579522 | 7_4:+24144409 | Msa1146480:CDS |
| GGCAAAATATGGTTTGAGAA+GGG | 0.598388 | 7_4:+24143242 | Msa1146480:CDS |
| AGGGTCTCCTCCAATAGTCA+AGG | 0.599925 | 7_4:+24143410 | Msa1146480:CDS |
| GTTTGAAGACTCCAAATGGT+GGG | 0.605264 | 7_4:+24143189 | Msa1146480:CDS |
| TGGAAGGCCATATTAGTACC+AGG | 0.610462 | 7_4:-24144496 | None:intergenic |
| TTCGATTTAAATAAGGATCG+AGG | 0.617185 | 7_4:+24144316 | Msa1146480:CDS |
| GAAGTGTGTCTTACCAAACA+TGG | 0.619879 | 7_4:-24144296 | None:intergenic |
| CCCATGACAACATTAAAGGA+TGG | 0.623811 | 7_4:-24143922 | None:intergenic |
| TGTTTGAAGACTCCAAATGG+TGG | 0.629714 | 7_4:+24143188 | Msa1146480:CDS |
| TTCAAATCTTAGTCCTGTAG+GGG | 0.646256 | 7_4:-24144398 | None:intergenic |
| TGTGTCTTACCAAACATGGA+TGG | 0.651629 | 7_4:-24144292 | None:intergenic |
| CTTACCCAAAGCCTTCAGGA+AGG | 0.662928 | 7_4:+24142105 | Msa1146480:CDS |
| GTCATGGGTGCATCATACGT+TGG | 0.667054 | 7_4:+24143937 | Msa1146480:CDS |
| TGTCTCTAAAGATGCGAACG+TGG | 0.671691 | 7_4:-24144516 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTAACAAATAATTAATG+TGG | + | chr7_4:24142197-24142216 | Msa1146480:intron | 15.0% |
| !! | AACTAACAAATAATTAATGT+GGG | + | chr7_4:24142198-24142217 | Msa1146480:intron | 15.0% |
| !! | TTAAATTTGCAAAAAAATGA+TGG | + | chr7_4:24143221-24143240 | Msa1146480:CDS | 15.0% |
| !! | AAGAAATTAATATTTGCTTA+AGG | + | chr7_4:24144015-24144034 | Msa1146480:intron | 15.0% |
| !!! | ATATTGATTTTGTGTTAAAT+GGG | + | chr7_4:24144341-24144360 | Msa1146480:CDS | 15.0% |
| !! | TTACAGATGAAAAAAACAAT+TGG | + | chr7_4:24142412-24142431 | Msa1146480:intron | 20.0% |
| !! | TACAGATGAAAAAAACAATT+GGG | + | chr7_4:24142413-24142432 | Msa1146480:intron | 20.0% |
| !! | AAACAAATGAAATCTTTGTT+TGG | + | chr7_4:24142903-24142922 | Msa1146480:intron | 20.0% |
| !!! | TGATTATTTTGCATTACTTT+AGG | - | chr7_4:24143069-24143088 | None:intergenic | 20.0% |
| !! | AAAAAAATGATGGCAAAATA+TGG | + | chr7_4:24143231-24143250 | Msa1146480:CDS | 20.0% |
| !! | ACATAATTGAAGAAATTTAG+AGG | - | chr7_4:24143495-24143514 | None:intergenic | 20.0% |
| !! | TTTCTTCAATTATGTGAATT+TGG | + | chr7_4:24143500-24143519 | Msa1146480:CDS | 20.0% |
| !! | AAAAGAGAAATTGAAAAAGA+TGG | - | chr7_4:24143731-24143750 | None:intergenic | 20.0% |
| !!! | TTGATTAGGTTTGAATTTTT+AGG | + | chr7_4:24143787-24143806 | Msa1146480:intron | 20.0% |
| !! | CATGAAAAATCATAATGAAA+TGG | + | chr7_4:24143812-24143831 | Msa1146480:intron | 20.0% |
| !!! | GATATTGATTTTGTGTTAAA+TGG | + | chr7_4:24144340-24144359 | Msa1146480:CDS | 20.0% |
| ! | TTAATGTGGGTATTATAGTA+TGG | + | chr7_4:24142211-24142230 | Msa1146480:intron | 25.0% |
| !! | AAAAAACAATTGGGTCATTT+TGG | + | chr7_4:24142422-24142441 | Msa1146480:intron | 25.0% |
| ! | AATTTAACTAGTTAGTTCGT+TGG | + | chr7_4:24142517-24142536 | Msa1146480:intron | 25.0% |
| ! | CGTATAGGTCAAAAAATTTA+GGG | + | chr7_4:24142786-24142805 | Msa1146480:intron | 25.0% |
| !!! | ATTTCTCCACAAACTTTTTT+GGG | - | chr7_4:24143142-24143161 | None:intergenic | 25.0% |
| !!! | TATTTCTCCACAAACTTTTT+TGG | - | chr7_4:24143143-24143162 | None:intergenic | 25.0% |
| ! | AAAAAGTTTGTGGAGAAATA+TGG | + | chr7_4:24143143-24143162 | Msa1146480:CDS | 25.0% |
| ! | AGATTTATTTCCTTGACTAT+TGG | - | chr7_4:24143423-24143442 | None:intergenic | 25.0% |
| !! | GATGTACAATTTTCACAATT+CGG | - | chr7_4:24143446-24143465 | None:intergenic | 25.0% |
| !!! | AATTGGCAAACATTTTGATT+AGG | + | chr7_4:24143773-24143792 | Msa1146480:intron | 25.0% |
| ! | TAATATTTGCTTAAGGAATG+AGG | + | chr7_4:24144022-24144041 | Msa1146480:intron | 25.0% |
| ! | AATTGTTCAAATCTCAAAGT+AGG | + | chr7_4:24144556-24144575 | Msa1146480:CDS | 25.0% |
| ! | ATGATCTTGTAAAAGTGTAC+TGG | - | chr7_4:24142084-24142103 | None:intergenic | 30.0% |
| GAACAAAGAATCTAAGTCAA+GGG | - | chr7_4:24142143-24142162 | None:intergenic | 30.0% | |
| TGAACAAAGAATCTAAGTCA+AGG | - | chr7_4:24142144-24142163 | None:intergenic | 30.0% | |
| AAGTATTTATAAGCCTAGTG+TGG | - | chr7_4:24142562-24142581 | None:intergenic | 30.0% | |
| GCGTATAGGTCAAAAAATTT+AGG | + | chr7_4:24142785-24142804 | Msa1146480:intron | 30.0% | |
| CTCTCTCATTCATATTAATC+TGG | + | chr7_4:24143095-24143114 | Msa1146480:intron | 30.0% | |
| ATCTGGTTGAATTAATTGAC+AGG | + | chr7_4:24143112-24143131 | Msa1146480:intron | 30.0% | |
| TTTGTGGAGAAATATGGAAA+AGG | + | chr7_4:24143149-24143168 | Msa1146480:CDS | 30.0% | |
| ! | GTCTTCAAACATATAGCTTT+TGG | - | chr7_4:24143179-24143198 | None:intergenic | 30.0% |
| ATATGTTTGAAGACTCCAAA+TGG | + | chr7_4:24143185-24143204 | Msa1146480:CDS | 30.0% | |
| ! | GATTTTCATTCTCTATCTGA+TGG | + | chr7_4:24143281-24143300 | Msa1146480:CDS | 30.0% |
| ! | TGAAAGAACCTCTCATTTTA+AGG | + | chr7_4:24143325-24143344 | Msa1146480:CDS | 30.0% |
| GATTTGTACCTTAAAATGAG+AGG | - | chr7_4:24143336-24143355 | None:intergenic | 30.0% | |
| TTTATTTCCTTGACTATTGG+AGG | - | chr7_4:24143420-24143439 | None:intergenic | 30.0% | |
| AAGAAATTTAGAGGCTGAAT+TGG | - | chr7_4:24143486-24143505 | None:intergenic | 30.0% | |
| TCTAGTAAAACATGTGCAAT+TGG | + | chr7_4:24143756-24143775 | Msa1146480:intron | 30.0% | |
| TTCAAGAGTTGTAACTTTCT+TGG | - | chr7_4:24143875-24143894 | None:intergenic | 30.0% | |
| TAAGCTGCATAGAAACATTT+GGG | + | chr7_4:24143977-24143996 | Msa1146480:intron | 30.0% | |
| GACACACTTCGATTTAAATA+AGG | + | chr7_4:24144309-24144328 | Msa1146480:CDS | 30.0% | |
| TTCGATTTAAATAAGGATCG+AGG | + | chr7_4:24144316-24144335 | Msa1146480:CDS | 30.0% | |
| TTGTGTTAAATGGGAGAATT+TGG | + | chr7_4:24144350-24144369 | Msa1146480:CDS | 30.0% | |
| ATTGACAACAACTTGAAAGT+TGG | + | chr7_4:24144448-24144467 | Msa1146480:CDS | 30.0% | |
| ACAAATTCCTGGTACTAATA+TGG | + | chr7_4:24144489-24144508 | Msa1146480:CDS | 30.0% | |
| !! | GATGTTTTGAACCACCAAAA+TGG | + | chr7_4:24142249-24142268 | Msa1146480:intron | 35.0% |
| ! | TTTTGAACCACCAAAATGGT+AGG | + | chr7_4:24142253-24142272 | Msa1146480:intron | 35.0% |
| TTTGAACCACCAAAATGGTA+GGG | + | chr7_4:24142254-24142273 | Msa1146480:intron | 35.0% | |
| ! | AACAATTACCCCTACCATTT+TGG | - | chr7_4:24142266-24142285 | None:intergenic | 35.0% |
| ! | GAGAGAGTTTAGAATGTTTC+TGG | - | chr7_4:24142694-24142713 | None:intergenic | 35.0% |
| AAGGCTTGATACCAATTTGT+TGG | - | chr7_4:24142755-24142774 | None:intergenic | 35.0% | |
| ACAAATTGGTATCAAGCCTT+TGG | + | chr7_4:24142755-24142774 | Msa1146480:intron | 35.0% | |
| CAGCTTAAACACATCAGTTT+GGG | - | chr7_4:24142955-24142974 | None:intergenic | 35.0% | |
| CAAACTGATGTGTTTAAGCT+GGG | + | chr7_4:24142954-24142973 | Msa1146480:intron | 35.0% | |
| TGGCAAAATATGGTTTGAGA+AGG | + | chr7_4:24143241-24143260 | Msa1146480:CDS | 35.0% | |
| GGCAAAATATGGTTTGAGAA+GGG | + | chr7_4:24143242-24143261 | Msa1146480:CDS | 35.0% | |
| AAATATGGTTTGAGAAGGGT+TGG | + | chr7_4:24143246-24143265 | Msa1146480:CDS | 35.0% | |
| CATATCTGAACACTAGAAGA+TGG | - | chr7_4:24143307-24143326 | None:intergenic | 35.0% | |
| !! | AATCTTTGATAAGAGTGCCT+TGG | + | chr7_4:24143352-24143371 | Msa1146480:CDS | 35.0% |
| !! | TAGCTTCGACTCTTTTGAAA+GGG | - | chr7_4:24143388-24143407 | None:intergenic | 35.0% |
| ! | TTAGCTTCGACTCTTTTGAA+AGG | - | chr7_4:24143389-24143408 | None:intergenic | 35.0% |
| TAAAGCTGGGAAATCACAAA+AGG | + | chr7_4:24143538-24143557 | Msa1146480:intron | 35.0% | |
| !!! | AAATGGTGTCCATTTTTTGC+AGG | + | chr7_4:24143829-24143848 | Msa1146480:intron | 35.0% |
| !!! | AATGGTGTCCATTTTTTGCA+GGG | + | chr7_4:24143830-24143849 | Msa1146480:intron | 35.0% |
| ACTTGTTTCCCTGCAAAAAA+TGG | - | chr7_4:24143841-24143860 | None:intergenic | 35.0% | |
| !! | AACATTAAAGGATGGATTGC+AGG | - | chr7_4:24143917-24143936 | None:intergenic | 35.0% |
| TCCATCCTTTAATGTTGTCA+TGG | + | chr7_4:24143921-24143940 | Msa1146480:CDS | 35.0% | |
| CCATCCTTTAATGTTGTCAT+GGG | + | chr7_4:24143922-24143941 | Msa1146480:CDS | 35.0% | |
| GTAAGCTGCATAGAAACATT+TGG | + | chr7_4:24143976-24143995 | Msa1146480:intron | 35.0% | |
| AGTCTACCAAGCAAAAGAAA+AGG | - | chr7_4:24144269-24144288 | None:intergenic | 35.0% | |
| TAGACTATACCATCCATGTT+TGG | + | chr7_4:24144283-24144302 | Msa1146480:intron | 35.0% | |
| TTCAAATCTTAGTCCTGTAG+GGG | - | chr7_4:24144401-24144420 | None:intergenic | 35.0% | |
| GTTCAAATCTTAGTCCTGTA+GGG | - | chr7_4:24144402-24144421 | None:intergenic | 35.0% | |
| AGTTCAAATCTTAGTCCTGT+AGG | - | chr7_4:24144403-24144422 | None:intergenic | 35.0% | |
| CTAAGATTTGAACTCTCAAG+TGG | + | chr7_4:24144409-24144428 | Msa1146480:CDS | 35.0% | |
| TGCAACTTTGAACAAATTCC+TGG | + | chr7_4:24144478-24144497 | Msa1146480:CDS | 35.0% | |
| TTACAAGCTTTCCTTCCTGA+AGG | - | chr7_4:24142119-24142138 | None:intergenic | 40.0% | |
| TTGAACCACCAAAATGGTAG+GGG | + | chr7_4:24142255-24142274 | Msa1146480:intron | 40.0% | |
| ! | AATTACCCCTACCATTTTGG+TGG | - | chr7_4:24142263-24142282 | None:intergenic | 40.0% |
| TCAAGCTTGCACCAACAAAT+TGG | + | chr7_4:24142741-24142760 | Msa1146480:intron | 40.0% | |
| GATCGAATTCTCATCTGTTG+CGG | + | chr7_4:24142808-24142827 | Msa1146480:intron | 40.0% | |
| TCAAGAACGGGAAGTGAATT+TGG | - | chr7_4:24142857-24142876 | None:intergenic | 40.0% | |
| AATTCACTTCCCGTTCTTGA+TGG | + | chr7_4:24142857-24142876 | Msa1146480:intron | 40.0% | |
| CAATTCTTGCCATCAAGAAC+GGG | - | chr7_4:24142869-24142888 | None:intergenic | 40.0% | |
| CCAATTCTTGCCATCAAGAA+CGG | - | chr7_4:24142870-24142889 | None:intergenic | 40.0% | |
| ! | CGTTCTTGATGGCAAGAATT+GGG | + | chr7_4:24142868-24142887 | Msa1146480:intron | 40.0% |
| CTTTCAAGATACTCTCGATG+TGG | + | chr7_4:24142926-24142945 | Msa1146480:intron | 40.0% | |
| CCAGCTTAAACACATCAGTT+TGG | - | chr7_4:24142956-24142975 | None:intergenic | 40.0% | |
| CCAAACTGATGTGTTTAAGC+TGG | + | chr7_4:24142953-24142972 | Msa1146480:intron | 40.0% | |
| AGCCTGCTCATAGTTTCATT+TGG | - | chr7_4:24142999-24143018 | None:intergenic | 40.0% | |
| GGCAATCCCAAAAAAGTTTG+TGG | + | chr7_4:24143133-24143152 | Msa1146480:intron | 40.0% | |
| TGTTTGAAGACTCCAAATGG+TGG | + | chr7_4:24143188-24143207 | Msa1146480:CDS | 40.0% | |
| GTTTGAAGACTCCAAATGGT+GGG | + | chr7_4:24143189-24143208 | Msa1146480:CDS | 40.0% | |
| AATTCCCAATTCCCACCATT+TGG | - | chr7_4:24143203-24143222 | None:intergenic | 40.0% | |
| GAAAGGGTAGTTTATCTCCA+AGG | - | chr7_4:24143372-24143391 | None:intergenic | 40.0% | |
| TCAAAAGAGTCGAAGCTAAG+AGG | + | chr7_4:24143390-24143409 | Msa1146480:CDS | 40.0% | |
| CAAAAGAGTCGAAGCTAAGA+GGG | + | chr7_4:24143391-24143410 | Msa1146480:CDS | 40.0% | |
| AGCAGTAGCGATATTAAAGC+TGG | + | chr7_4:24143524-24143543 | Msa1146480:intron | 40.0% | |
| GCAGTAGCGATATTAAAGCT+GGG | + | chr7_4:24143525-24143544 | Msa1146480:intron | 40.0% | |
| ! | CATACTCACAAAAAGTGCGA+AGG | + | chr7_4:24143572-24143591 | Msa1146480:intron | 40.0% |
| CCCATGACAACATTAAAGGA+TGG | - | chr7_4:24143925-24143944 | None:intergenic | 40.0% | |
| TGCACCCATGACAACATTAA+AGG | - | chr7_4:24143929-24143948 | None:intergenic | 40.0% | |
| GACATGTGTGTGTCAATATC+TGG | - | chr7_4:24144080-24144099 | None:intergenic | 40.0% | |
| ! | AACCTGCCTTTTCTTTTGCT+TGG | + | chr7_4:24144260-24144279 | Msa1146480:intron | 40.0% |
| TACCAAGCAAAAGAAAAGGC+AGG | - | chr7_4:24144265-24144284 | None:intergenic | 40.0% | |
| TGTGTCTTACCAAACATGGA+TGG | - | chr7_4:24144295-24144314 | None:intergenic | 40.0% | |
| GAAGTGTGTCTTACCAAACA+TGG | - | chr7_4:24144299-24144318 | None:intergenic | 40.0% | |
| GATTTGAACTCTCAAGTGGA+TGG | + | chr7_4:24144413-24144432 | Msa1146480:CDS | 40.0% | |
| CATACTTACCCAAAGCCTTC+AGG | + | chr7_4:24142101-24142120 | Msa1146480:CDS | 45.0% | |
| CTTTCCTTCCTGAAGGCTTT+GGG | - | chr7_4:24142112-24142131 | None:intergenic | 45.0% | |
| GTGAAGCAAGTTACCACACT+AGG | + | chr7_4:24142546-24142565 | Msa1146480:intron | 45.0% | |
| TCATCTGTTGCGGTGATGAA+TGG | + | chr7_4:24142818-24142837 | Msa1146480:intron | 45.0% | |
| ! | CCGTTCTTGATGGCAAGAAT+TGG | + | chr7_4:24142867-24142886 | Msa1146480:intron | 45.0% |
| GGCCAAATGAAACTATGAGC+AGG | + | chr7_4:24142994-24143013 | Msa1146480:intron | 45.0% | |
| ! | AGACTCCAAATGGTGGGAAT+TGG | + | chr7_4:24143195-24143214 | Msa1146480:CDS | 45.0% |
| ! | GACTCCAAATGGTGGGAATT+GGG | + | chr7_4:24143196-24143215 | Msa1146480:CDS | 45.0% |
| AGAGACGTTTCAAACCCTCT+CGG | + | chr7_4:24143652-24143671 | Msa1146480:intron | 45.0% | |
| ! | CGTTGGATGCAATTTTGCTC+TGG | + | chr7_4:24143954-24143973 | Msa1146480:CDS | 45.0% |
| ATGGGAGAATTTGGTCTGCA+AGG | + | chr7_4:24144359-24144378 | Msa1146480:CDS | 45.0% | |
| TGGAAGGCCATATTAGTACC+AGG | - | chr7_4:24144499-24144518 | None:intergenic | 45.0% | |
| TCTAAAGATGCGAACGTGGA+AGG | - | chr7_4:24144515-24144534 | None:intergenic | 45.0% | |
| ! | TGTCTCTAAAGATGCGAACG+TGG | - | chr7_4:24144519-24144538 | None:intergenic | 45.0% |
| CTTACCCAAAGCCTTCAGGA+AGG | + | chr7_4:24142105-24142124 | Msa1146480:CDS | 50.0% | |
| GCTTTCCTTCCTGAAGGCTT+TGG | - | chr7_4:24142113-24142132 | None:intergenic | 50.0% | |
| CCTATACGCACAAGAGCCAA+AGG | - | chr7_4:24142774-24142793 | None:intergenic | 50.0% | |
| !! | CCTTTGGCTCTTGTGCGTAT+AGG | + | chr7_4:24142771-24142790 | Msa1146480:intron | 50.0% |
| TCTGTTGCGGTGATGAATGG+TGG | + | chr7_4:24142821-24142840 | Msa1146480:intron | 50.0% | |
| ! | GCGGTGATGAATGGTGGAAA+CGG | + | chr7_4:24142827-24142846 | Msa1146480:intron | 50.0% |
| CTGATGTGTTTAAGCTGGGC+TGG | + | chr7_4:24142958-24142977 | Msa1146480:intron | 50.0% | |
| ! | AGCTGGGCTGGACAACAAAT+CGG | + | chr7_4:24142970-24142989 | Msa1146480:intron | 50.0% |
| AAACTATGAGCAGGCTGAGC+TGG | + | chr7_4:24143003-24143022 | Msa1146480:intron | 50.0% | |
| AGGGTCTCCTCCAATAGTCA+AGG | + | chr7_4:24143410-24143429 | Msa1146480:CDS | 50.0% | |
| GTTTCAAACCCTCTCGGACT+CGG | + | chr7_4:24143658-24143677 | Msa1146480:intron | 50.0% | |
| ACAACATACCGAGTCCGAGA+GGG | - | chr7_4:24143669-24143688 | None:intergenic | 50.0% | |
| TACAACATACCGAGTCCGAG+AGG | - | chr7_4:24143670-24143689 | None:intergenic | 50.0% | |
| GTCATGGGTGCATCATACGT+TGG | + | chr7_4:24143937-24143956 | Msa1146480:CDS | 50.0% | |
| ! | GGTCTGCAAGGTACCTAATC+AGG | + | chr7_4:24144371-24144390 | Msa1146480:CDS | 50.0% |
| CTGTAGGGGTCATCCTGATT+AGG | - | chr7_4:24144387-24144406 | None:intergenic | 50.0% | |
| CTAATCAGGATGACCCCTAC+AGG | + | chr7_4:24144385-24144404 | Msa1146480:CDS | 50.0% | |
| ! | TGGGCTGGACAACAAATCGG+TGG | + | chr7_4:24142973-24142992 | Msa1146480:intron | 55.0% |
| GCAGGCTGAGCTGGACTCTT+CGG | + | chr7_4:24143012-24143031 | Msa1146480:intron | 60.0% | |
| CAGGCTGAGCTGGACTCTTC+GGG | + | chr7_4:24143013-24143032 | Msa1146480:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 24142054 | 24144594 | 24142054 | ID=Msa1146480;Name=Msa1146480 |
| chr7_4 | mRNA | 24142054 | 24144594 | 24142054 | ID=Msa1146480-mRNA-1;Parent=Msa1146480;Name=Msa1146480-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|4|0|302 |
| chr7_4 | exon | 24142054 | 24142134 | 24142054 | ID=Msa1146480-mRNA-1:exon:6026;Parent=Msa1146480-mRNA-1 |
| chr7_4 | exon | 24143134 | 24143527 | 24143134 | ID=Msa1146480-mRNA-1:exon:6027;Parent=Msa1146480-mRNA-1 |
| chr7_4 | exon | 24143851 | 24143975 | 24143851 | ID=Msa1146480-mRNA-1:exon:6028;Parent=Msa1146480-mRNA-1 |
| chr7_4 | exon | 24144286 | 24144594 | 24144286 | ID=Msa1146480-mRNA-1:exon:6029;Parent=Msa1146480-mRNA-1 |
| chr7_4 | CDS | 24142054 | 24142134 | 24142054 | ID=Msa1146480-mRNA-1:cds;Parent=Msa1146480-mRNA-1 |
| chr7_4 | CDS | 24143134 | 24143527 | 24143134 | ID=Msa1146480-mRNA-1:cds;Parent=Msa1146480-mRNA-1 |
| chr7_4 | CDS | 24143851 | 24143975 | 24143851 | ID=Msa1146480-mRNA-1:cds;Parent=Msa1146480-mRNA-1 |
| chr7_4 | CDS | 24144286 | 24144594 | 24144286 | ID=Msa1146480-mRNA-1:cds;Parent=Msa1146480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
