Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146540 | AES78893.2 | 86.250 | 80 | 11 | 0 | 1 | 80 | 1 | 80 | 8.49e-43 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146540 | sp|Q8L3W1|VRN1_ARATH | 38.235 | 68 | 42 | 0 | 13 | 80 | 6 | 73 | 1.53e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146540 | G7KVW6 | 86.250 | 80 | 11 | 0 | 1 | 80 | 1 | 80 | 4.06e-43 | 153 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1146540 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146540 | MtrunA17_Chr7g0233561 | 86.250 | 80 | 11 | 0 | 1 | 80 | 6 | 85 | 8.99e-47 | 153 |
| Msa1146540 | MtrunA17_Chr3g0131891 | 76.250 | 80 | 19 | 0 | 1 | 80 | 7 | 86 | 1.01e-40 | 137 |
| Msa1146540 | MtrunA17_Chr7g0233571 | 74.324 | 74 | 19 | 0 | 7 | 80 | 4 | 77 | 2.71e-35 | 120 |
| Msa1146540 | MtrunA17_Chr7g0233541 | 88.679 | 53 | 6 | 0 | 28 | 80 | 1 | 53 | 2.29e-28 | 104 |
| Msa1146540 | MtrunA17_Chr7g0233531 | 83.019 | 53 | 9 | 0 | 28 | 80 | 1 | 53 | 5.44e-28 | 103 |
| Msa1146540 | MtrunA17_Chr7g0233521 | 84.906 | 53 | 8 | 0 | 28 | 80 | 1 | 53 | 2.40e-26 | 99.0 |
| Msa1146540 | MtrunA17_Chr3g0103151 | 52.113 | 71 | 32 | 1 | 10 | 80 | 9 | 77 | 2.12e-19 | 78.2 |
| Msa1146540 | MtrunA17_Chr3g0103181 | 49.296 | 71 | 34 | 1 | 10 | 80 | 9 | 77 | 7.84e-17 | 73.9 |
| Msa1146540 | MtrunA17_Chr8g0390841 | 44.286 | 70 | 39 | 0 | 11 | 80 | 37 | 106 | 2.58e-16 | 73.6 |
| Msa1146540 | MtrunA17_Chr3g0103191 | 46.479 | 71 | 36 | 1 | 10 | 80 | 9 | 77 | 4.39e-16 | 71.6 |
| Msa1146540 | MtrunA17_Chr5g0419201 | 39.706 | 68 | 41 | 0 | 13 | 80 | 16 | 83 | 7.72e-15 | 67.0 |
| Msa1146540 | MtrunA17_Chr1g0171611 | 41.176 | 68 | 40 | 0 | 10 | 77 | 6 | 73 | 4.76e-12 | 60.8 |
| Msa1146540 | MtrunA17_Chr1g0163231 | 41.176 | 68 | 40 | 0 | 10 | 77 | 6 | 73 | 5.36e-12 | 60.8 |
| Msa1146540 | MtrunA17_Chr1g0162441 | 36.765 | 68 | 43 | 0 | 13 | 80 | 7 | 74 | 1.49e-11 | 59.7 |
| Msa1146540 | MtrunA17_Chr3g0103171 | 43.396 | 53 | 30 | 0 | 28 | 80 | 5 | 57 | 1.97e-11 | 58.9 |
| Msa1146540 | MtrunA17_Chr1g0208771 | 45.000 | 60 | 30 | 1 | 21 | 80 | 8 | 64 | 4.36e-11 | 58.5 |
| Msa1146540 | MtrunA17_Chr4g0067431 | 43.662 | 71 | 39 | 1 | 11 | 80 | 13 | 83 | 5.21e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146540 | AT3G18990.1 | 38.235 | 68 | 42 | 0 | 13 | 80 | 6 | 73 | 1.56e-13 | 65.9 |
| Msa1146540 | AT3G18990.2 | 38.235 | 68 | 42 | 0 | 13 | 80 | 6 | 73 | 1.89e-13 | 65.5 |
| Msa1146540 | AT1G49475.1 | 39.706 | 68 | 40 | 1 | 13 | 80 | 34 | 100 | 6.08e-11 | 57.4 |
Find 21 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAAATGGAAATTAAATT+TGG | 0.185593 | 7_4:+24281868 | Msa1146540:CDS |
| TTTCATCAACAATGTGAAAT+TGG | 0.209794 | 7_4:+24282033 | Msa1146540:CDS |
| GTCTCTAGACATATAGCTTT+TGG | 0.313968 | 7_4:-24281836 | None:intergenic |
| AGACTCCAAATGGTGCAAAA+TGG | 0.357064 | 7_4:+24281855 | Msa1146540:CDS |
| CAATGAGTGATGGCAAGATA+TGG | 0.428994 | 7_4:+24281891 | Msa1146540:CDS |
| GATGATGCCAAGAAAGTTTG+TGG | 0.433802 | 7_4:+24281793 | Msa1146540:intron |
| AAAGGCTTACAAGCTTTCCT+TGG | 0.438493 | 7_4:-24281060 | None:intergenic |
| AGATATGGTTTGAGAAGGGT+TGG | 0.481735 | 7_4:+24281906 | Msa1146540:CDS |
| ATCGTAGAGCAGCTCAAAAG+AGG | 0.489984 | 7_4:+24281989 | Msa1146540:CDS |
| AGGTTTATTTCCTTGACCAT+TGG | 0.505200 | 7_4:-24281953 | None:intergenic |
| TTAAATTTGGCAATGAGTGA+TGG | 0.512239 | 7_4:+24281881 | Msa1146540:CDS |
| TTACAAGCTTTCCTTGGAGA+AGG | 0.524389 | 7_4:-24281054 | None:intergenic |
| TGGCAAGATATGGTTTGAGA+AGG | 0.555350 | 7_4:+24281901 | Msa1146540:CDS |
| ACATTGTTGATGAAATTCAA+AGG | 0.586074 | 7_4:-24282025 | None:intergenic |
| ATATGTCTAGAGACTCCAAA+TGG | 0.586498 | 7_4:+24281845 | Msa1146540:CDS |
| GGCAAGATATGGTTTGAGAA+GGG | 0.606783 | 7_4:+24281902 | Msa1146540:CDS |
| GCATCACTCTCCAATGGTCA+AGG | 0.616700 | 7_4:+24281943 | Msa1146540:CDS |
| TGCAGAGCATCACTCTCCAA+TGG | 0.630787 | 7_4:+24281937 | Msa1146540:CDS |
| CTTACTGAAAACCTTCTCCA+AGG | 0.638528 | 7_4:+24281043 | Msa1146540:CDS |
| TTGTTGATGAAATTCAAAGG+AGG | 0.689383 | 7_4:-24282022 | None:intergenic |
| CATGGCTAGTGAGATTGCTG+AGG | 0.696319 | 7_4:+24280991 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATTTTACATTACTTT+AGG | - | chr7_4:24281729-24281748 | None:intergenic | 10.0% |
| !! | TTATATAGTTCATATTAATA+TGG | + | chr7_4:24281755-24281774 | Msa1146540:intron | 10.0% |
| !!! | AAATTATTTTACATTACTTT+AGG | - | chr7_4:24281729-24281748 | None:intergenic | 10.0% |
| !! | TTATATAGTTCATATTAATA+TGG | + | chr7_4:24281755-24281774 | Msa1146540:intron | 10.0% |
| !!! | ATGTTATTTATGTTTGTATT+TGG | + | chr7_4:24281132-24281151 | Msa1146540:intron | 15.0% |
| !! | TCACATAAACATTTATAATA+TGG | - | chr7_4:24281218-24281237 | None:intergenic | 15.0% |
| !! | AATAAATAAAATTTCTCTCT+AGG | - | chr7_4:24281549-24281568 | None:intergenic | 15.0% |
| !!! | TAGATTACTTGTTAAAAATT+TGG | + | chr7_4:24281593-24281612 | Msa1146540:intron | 15.0% |
| !!! | AGATTACTTGTTAAAAATTT+GGG | + | chr7_4:24281594-24281613 | Msa1146540:intron | 15.0% |
| !!! | ATGTTATTTATGTTTGTATT+TGG | + | chr7_4:24281132-24281151 | Msa1146540:intron | 15.0% |
| !! | TCACATAAACATTTATAATA+TGG | - | chr7_4:24281218-24281237 | None:intergenic | 15.0% |
| !! | AATAAATAAAATTTCTCTCT+AGG | - | chr7_4:24281549-24281568 | None:intergenic | 15.0% |
| !!! | TAGATTACTTGTTAAAAATT+TGG | + | chr7_4:24281593-24281612 | Msa1146540:intron | 15.0% |
| !!! | AGATTACTTGTTAAAAATTT+GGG | + | chr7_4:24281594-24281613 | Msa1146540:intron | 15.0% |
| !! | ATTTATAATATGGCATCATA+AGG | - | chr7_4:24281208-24281227 | None:intergenic | 20.0% |
| !!! | AACTCTAAATTTGAAATTAC+TGG | - | chr7_4:24281257-24281276 | None:intergenic | 20.0% |
| !!! | TTCAAATTTAGAGTTAAACA+TGG | + | chr7_4:24281262-24281281 | Msa1146540:intron | 20.0% |
| !! | AATCAATTGTTCTGTAATTT+AGG | - | chr7_4:24281345-24281364 | None:intergenic | 20.0% |
| !!! | TTTTAAGAACGTTTCATTTT+AGG | + | chr7_4:24281412-24281431 | Msa1146540:intron | 20.0% |
| !! | AGTTATTTATTTGTATTAGG+GGG | - | chr7_4:24281458-24281477 | None:intergenic | 20.0% |
| !! | GAGTTATTTATTTGTATTAG+GGG | - | chr7_4:24281459-24281478 | None:intergenic | 20.0% |
| !! | GGAGTTATTTATTTGTATTA+GGG | - | chr7_4:24281460-24281479 | None:intergenic | 20.0% |
| !! | AGGAGTTATTTATTTGTATT+AGG | - | chr7_4:24281461-24281480 | None:intergenic | 20.0% |
| !! | TCTGTCAATTTATTCAAATT+TGG | + | chr7_4:24281660-24281679 | Msa1146540:intron | 20.0% |
| !! | CTGTCAATTTATTCAAATTT+GGG | + | chr7_4:24281661-24281680 | Msa1146540:intron | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | + | chr7_4:24281868-24281887 | Msa1146540:CDS | 20.0% |
| !! | ATTTATAATATGGCATCATA+AGG | - | chr7_4:24281208-24281227 | None:intergenic | 20.0% |
| !!! | AACTCTAAATTTGAAATTAC+TGG | - | chr7_4:24281257-24281276 | None:intergenic | 20.0% |
| !!! | TTCAAATTTAGAGTTAAACA+TGG | + | chr7_4:24281262-24281281 | Msa1146540:intron | 20.0% |
| !! | AATCAATTGTTCTGTAATTT+AGG | - | chr7_4:24281345-24281364 | None:intergenic | 20.0% |
| !!! | TTTTAAGAACGTTTCATTTT+AGG | + | chr7_4:24281412-24281431 | Msa1146540:intron | 20.0% |
| !! | AGTTATTTATTTGTATTAGG+GGG | - | chr7_4:24281458-24281477 | None:intergenic | 20.0% |
| !! | GAGTTATTTATTTGTATTAG+GGG | - | chr7_4:24281459-24281478 | None:intergenic | 20.0% |
| !! | GGAGTTATTTATTTGTATTA+GGG | - | chr7_4:24281460-24281479 | None:intergenic | 20.0% |
| !! | AGGAGTTATTTATTTGTATT+AGG | - | chr7_4:24281461-24281480 | None:intergenic | 20.0% |
| !! | TCTGTCAATTTATTCAAATT+TGG | + | chr7_4:24281660-24281679 | Msa1146540:intron | 20.0% |
| !! | CTGTCAATTTATTCAAATTT+GGG | + | chr7_4:24281661-24281680 | Msa1146540:intron | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | + | chr7_4:24281868-24281887 | Msa1146540:CDS | 20.0% |
| ! | TAAGTATGATCTTGAAAAAG+TGG | - | chr7_4:24281027-24281046 | None:intergenic | 25.0% |
| ! | AACAAGAACAAAGAATCTAA+AGG | - | chr7_4:24281081-24281100 | None:intergenic | 25.0% |
| !!! | AAATTACTGGTTTTACTGTT+AGG | - | chr7_4:24281244-24281263 | None:intergenic | 25.0% |
| !! | TACATTACTTTAGGAAATAC+TGG | - | chr7_4:24281720-24281739 | None:intergenic | 25.0% |
| !! | TATTTTTCCACAAACTTTCT+TGG | - | chr7_4:24281803-24281822 | None:intergenic | 25.0% |
| ! | AGAAAGTTTGTGGAAAAATA+TGG | + | chr7_4:24281803-24281822 | Msa1146540:CDS | 25.0% |
| !! | ACATTGTTGATGAAATTCAA+AGG | - | chr7_4:24282028-24282047 | None:intergenic | 25.0% |
| ! | TTTCATCAACAATGTGAAAT+TGG | + | chr7_4:24282033-24282052 | Msa1146540:CDS | 25.0% |
| ! | TAAGTATGATCTTGAAAAAG+TGG | - | chr7_4:24281027-24281046 | None:intergenic | 25.0% |
| ! | AACAAGAACAAAGAATCTAA+AGG | - | chr7_4:24281081-24281100 | None:intergenic | 25.0% |
| !!! | AAATTACTGGTTTTACTGTT+AGG | - | chr7_4:24281244-24281263 | None:intergenic | 25.0% |
| !! | TACATTACTTTAGGAAATAC+TGG | - | chr7_4:24281720-24281739 | None:intergenic | 25.0% |
| !! | TATTTTTCCACAAACTTTCT+TGG | - | chr7_4:24281803-24281822 | None:intergenic | 25.0% |
| ! | AGAAAGTTTGTGGAAAAATA+TGG | + | chr7_4:24281803-24281822 | Msa1146540:CDS | 25.0% |
| !! | ACATTGTTGATGAAATTCAA+AGG | - | chr7_4:24282028-24282047 | None:intergenic | 25.0% |
| ! | TTTCATCAACAATGTGAAAT+TGG | + | chr7_4:24282033-24282052 | Msa1146540:CDS | 25.0% |
| ATGATCTTGAAAAAGTGGAT+TGG | - | chr7_4:24281022-24281041 | None:intergenic | 30.0% | |
| ! | TGAAATAGAGCTGTCAATTT+TGG | + | chr7_4:24281298-24281317 | Msa1146540:intron | 30.0% |
| !! | TCAATTTTGGTCAAACCTAA+TGG | + | chr7_4:24281311-24281330 | Msa1146540:intron | 30.0% |
| CTCCTGTAATAAACATAATC+CGG | + | chr7_4:24281476-24281495 | Msa1146540:intron | 30.0% | |
| TACCGGATTATGTTTATTAC+AGG | - | chr7_4:24281481-24281500 | None:intergenic | 30.0% | |
| AACTACCTGATGAGTATTTA+TGG | + | chr7_4:24281504-24281523 | Msa1146540:intron | 30.0% | |
| ACTACCTGATGAGTATTTAT+GGG | + | chr7_4:24281505-24281524 | Msa1146540:intron | 30.0% | |
| TTTGTGGAAAAATATGGAGA+AGG | + | chr7_4:24281809-24281828 | Msa1146540:CDS | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | - | chr7_4:24281863-24281882 | None:intergenic | 30.0% |
| TTAAATTTGGCAATGAGTGA+TGG | + | chr7_4:24281881-24281900 | Msa1146540:CDS | 30.0% | |
| ! | TTGTTGATGAAATTCAAAGG+AGG | - | chr7_4:24282025-24282044 | None:intergenic | 30.0% |
| ATGATCTTGAAAAAGTGGAT+TGG | - | chr7_4:24281022-24281041 | None:intergenic | 30.0% | |
| ! | TGAAATAGAGCTGTCAATTT+TGG | + | chr7_4:24281298-24281317 | Msa1146540:intron | 30.0% |
| !! | TCAATTTTGGTCAAACCTAA+TGG | + | chr7_4:24281311-24281330 | Msa1146540:intron | 30.0% |
| CTCCTGTAATAAACATAATC+CGG | + | chr7_4:24281476-24281495 | Msa1146540:intron | 30.0% | |
| TACCGGATTATGTTTATTAC+AGG | - | chr7_4:24281481-24281500 | None:intergenic | 30.0% | |
| AACTACCTGATGAGTATTTA+TGG | + | chr7_4:24281504-24281523 | Msa1146540:intron | 30.0% | |
| ACTACCTGATGAGTATTTAT+GGG | + | chr7_4:24281505-24281524 | Msa1146540:intron | 30.0% | |
| TTTGTGGAAAAATATGGAGA+AGG | + | chr7_4:24281809-24281828 | Msa1146540:CDS | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | - | chr7_4:24281863-24281882 | None:intergenic | 30.0% |
| TTAAATTTGGCAATGAGTGA+TGG | + | chr7_4:24281881-24281900 | Msa1146540:CDS | 30.0% | |
| ! | TTGTTGATGAAATTCAAAGG+AGG | - | chr7_4:24282025-24282044 | None:intergenic | 30.0% |
| !! | TTGATTCATTTTTGCCAGTC+CGG | + | chr7_4:24281359-24281378 | Msa1146540:intron | 35.0% |
| CTACCTGATGAGTATTTATG+GGG | + | chr7_4:24281506-24281525 | Msa1146540:intron | 35.0% | |
| AATTTGGGCTTAGAGATATC+TGG | + | chr7_4:24281676-24281695 | Msa1146540:intron | 35.0% | |
| ATTTGGGCTTAGAGATATCT+GGG | + | chr7_4:24281677-24281696 | Msa1146540:intron | 35.0% | |
| ! | GTCTCTAGACATATAGCTTT+TGG | - | chr7_4:24281839-24281858 | None:intergenic | 35.0% |
| ATATGTCTAGAGACTCCAAA+TGG | + | chr7_4:24281845-24281864 | Msa1146540:CDS | 35.0% | |
| AGGTTTATTTCCTTGACCAT+TGG | - | chr7_4:24281956-24281975 | None:intergenic | 35.0% | |
| !!! | GCTCTACGATTTTTAGCATT+CGG | - | chr7_4:24281979-24281998 | None:intergenic | 35.0% |
| !! | TTGATTCATTTTTGCCAGTC+CGG | + | chr7_4:24281359-24281378 | Msa1146540:intron | 35.0% |
| CTACCTGATGAGTATTTATG+GGG | + | chr7_4:24281506-24281525 | Msa1146540:intron | 35.0% | |
| AATTTGGGCTTAGAGATATC+TGG | + | chr7_4:24281676-24281695 | Msa1146540:intron | 35.0% | |
| ATTTGGGCTTAGAGATATCT+GGG | + | chr7_4:24281677-24281696 | Msa1146540:intron | 35.0% | |
| ! | GTCTCTAGACATATAGCTTT+TGG | - | chr7_4:24281839-24281858 | None:intergenic | 35.0% |
| ATATGTCTAGAGACTCCAAA+TGG | + | chr7_4:24281845-24281864 | Msa1146540:CDS | 35.0% | |
| AGGTTTATTTCCTTGACCAT+TGG | - | chr7_4:24281956-24281975 | None:intergenic | 35.0% | |
| !!! | GCTCTACGATTTTTAGCATT+CGG | - | chr7_4:24281979-24281998 | None:intergenic | 35.0% |
| CTTACTGAAAACCTTCTCCA+AGG | + | chr7_4:24281043-24281062 | Msa1146540:CDS | 40.0% | |
| TTACAAGCTTTCCTTGGAGA+AGG | - | chr7_4:24281057-24281076 | None:intergenic | 40.0% | |
| AAAGGCTTACAAGCTTTCCT+TGG | - | chr7_4:24281063-24281082 | None:intergenic | 40.0% | |
| ! | ATTTAGGAGTGCAGTCCATT+AGG | - | chr7_4:24281329-24281348 | None:intergenic | 40.0% |
| CTCATCAGGTAGTTATCTAC+CGG | - | chr7_4:24281498-24281517 | None:intergenic | 40.0% | |
| AAGCCCCATAAATACTCATC+AGG | - | chr7_4:24281512-24281531 | None:intergenic | 40.0% | |
| TTATGGGGCTTAGAGATATC+TGG | + | chr7_4:24281521-24281540 | Msa1146540:intron | 40.0% | |
| TATGGGGCTTAGAGATATCT+GGG | + | chr7_4:24281522-24281541 | Msa1146540:intron | 40.0% | |
| ! | AAAACACACCAGTTTGGGTT+TGG | - | chr7_4:24281625-24281644 | None:intergenic | 40.0% |
| ! | AACCCAAACTGGTGTGTTTT+AGG | + | chr7_4:24281625-24281644 | Msa1146540:intron | 40.0% |
| AGCCTAAAACACACCAGTTT+GGG | - | chr7_4:24281630-24281649 | None:intergenic | 40.0% | |
| TAGCCTAAAACACACCAGTT+TGG | - | chr7_4:24281631-24281650 | None:intergenic | 40.0% | |
| !! | GGTGTGTTTTAGGCTATGAA+CGG | + | chr7_4:24281635-24281654 | Msa1146540:intron | 40.0% |
| TTTGGGCTTAGAGATATCTG+GGG | + | chr7_4:24281678-24281697 | Msa1146540:intron | 40.0% | |
| GATGATGCCAAGAAAGTTTG+TGG | + | chr7_4:24281793-24281812 | Msa1146540:intron | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | + | chr7_4:24281855-24281874 | Msa1146540:CDS | 40.0% | |
| CAATGAGTGATGGCAAGATA+TGG | + | chr7_4:24281891-24281910 | Msa1146540:CDS | 40.0% | |
| TGGCAAGATATGGTTTGAGA+AGG | + | chr7_4:24281901-24281920 | Msa1146540:CDS | 40.0% | |
| GGCAAGATATGGTTTGAGAA+GGG | + | chr7_4:24281902-24281921 | Msa1146540:CDS | 40.0% | |
| AGATATGGTTTGAGAAGGGT+TGG | + | chr7_4:24281906-24281925 | Msa1146540:CDS | 40.0% | |
| !!! | CTACGATTTTTAGCATTCGG+AGG | - | chr7_4:24281976-24281995 | None:intergenic | 40.0% |
| CTTACTGAAAACCTTCTCCA+AGG | + | chr7_4:24281043-24281062 | Msa1146540:CDS | 40.0% | |
| TTACAAGCTTTCCTTGGAGA+AGG | - | chr7_4:24281057-24281076 | None:intergenic | 40.0% | |
| AAAGGCTTACAAGCTTTCCT+TGG | - | chr7_4:24281063-24281082 | None:intergenic | 40.0% | |
| ! | ATTTAGGAGTGCAGTCCATT+AGG | - | chr7_4:24281329-24281348 | None:intergenic | 40.0% |
| CTCATCAGGTAGTTATCTAC+CGG | - | chr7_4:24281498-24281517 | None:intergenic | 40.0% | |
| AAGCCCCATAAATACTCATC+AGG | - | chr7_4:24281512-24281531 | None:intergenic | 40.0% | |
| TTATGGGGCTTAGAGATATC+TGG | + | chr7_4:24281521-24281540 | Msa1146540:intron | 40.0% | |
| TATGGGGCTTAGAGATATCT+GGG | + | chr7_4:24281522-24281541 | Msa1146540:intron | 40.0% | |
| ! | AAAACACACCAGTTTGGGTT+TGG | - | chr7_4:24281625-24281644 | None:intergenic | 40.0% |
| ! | AACCCAAACTGGTGTGTTTT+AGG | + | chr7_4:24281625-24281644 | Msa1146540:intron | 40.0% |
| AGCCTAAAACACACCAGTTT+GGG | - | chr7_4:24281630-24281649 | None:intergenic | 40.0% | |
| TAGCCTAAAACACACCAGTT+TGG | - | chr7_4:24281631-24281650 | None:intergenic | 40.0% | |
| !! | GGTGTGTTTTAGGCTATGAA+CGG | + | chr7_4:24281635-24281654 | Msa1146540:intron | 40.0% |
| TTTGGGCTTAGAGATATCTG+GGG | + | chr7_4:24281678-24281697 | Msa1146540:intron | 40.0% | |
| GATGATGCCAAGAAAGTTTG+TGG | + | chr7_4:24281793-24281812 | Msa1146540:intron | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | + | chr7_4:24281855-24281874 | Msa1146540:CDS | 40.0% | |
| CAATGAGTGATGGCAAGATA+TGG | + | chr7_4:24281891-24281910 | Msa1146540:CDS | 40.0% | |
| TGGCAAGATATGGTTTGAGA+AGG | + | chr7_4:24281901-24281920 | Msa1146540:CDS | 40.0% | |
| GGCAAGATATGGTTTGAGAA+GGG | + | chr7_4:24281902-24281921 | Msa1146540:CDS | 40.0% | |
| AGATATGGTTTGAGAAGGGT+TGG | + | chr7_4:24281906-24281925 | Msa1146540:CDS | 40.0% | |
| !!! | CTACGATTTTTAGCATTCGG+AGG | - | chr7_4:24281976-24281995 | None:intergenic | 40.0% |
| ! | TTGGCTTGAAGAAACACGAG+AGG | + | chr7_4:24281151-24281170 | Msa1146540:intron | 45.0% |
| !! | TTCATTTTTGCCAGTCCGGT+TGG | + | chr7_4:24281363-24281382 | Msa1146540:intron | 45.0% |
| ATAAAGCCGAGTGAACCAAC+CGG | - | chr7_4:24281381-24281400 | None:intergenic | 45.0% | |
| ATGGGGCTTAGAGATATCTG+GGG | + | chr7_4:24281523-24281542 | Msa1146540:intron | 45.0% | |
| TTGGGCTTAGAGATATCTGG+GGG | + | chr7_4:24281679-24281698 | Msa1146540:intron | 45.0% | |
| ATCGTAGAGCAGCTCAAAAG+AGG | + | chr7_4:24281989-24282008 | Msa1146540:CDS | 45.0% | |
| ! | TTGGCTTGAAGAAACACGAG+AGG | + | chr7_4:24281151-24281170 | Msa1146540:intron | 45.0% |
| !! | TTCATTTTTGCCAGTCCGGT+TGG | + | chr7_4:24281363-24281382 | Msa1146540:intron | 45.0% |
| ATAAAGCCGAGTGAACCAAC+CGG | - | chr7_4:24281381-24281400 | None:intergenic | 45.0% | |
| ATGGGGCTTAGAGATATCTG+GGG | + | chr7_4:24281523-24281542 | Msa1146540:intron | 45.0% | |
| TTGGGCTTAGAGATATCTGG+GGG | + | chr7_4:24281679-24281698 | Msa1146540:intron | 45.0% | |
| ATCGTAGAGCAGCTCAAAAG+AGG | + | chr7_4:24281989-24282008 | Msa1146540:CDS | 45.0% | |
| AGGCCCCGCAAATATCTCTA+AGG | + | chr7_4:24281432-24281451 | Msa1146540:intron | 50.0% | |
| GGGCCTTAGAGATATTTGCG+GGG | - | chr7_4:24281438-24281457 | None:intergenic | 50.0% | |
| GGGGCCTTAGAGATATTTGC+GGG | - | chr7_4:24281439-24281458 | None:intergenic | 50.0% | |
| GGGGGCCTTAGAGATATTTG+CGG | - | chr7_4:24281440-24281459 | None:intergenic | 50.0% | |
| TGGGCTTAGAGATATCTGGG+GGG | + | chr7_4:24281680-24281699 | Msa1146540:intron | 50.0% | |
| AGAGATATCTGGGGGGTTTG+TGG | + | chr7_4:24281687-24281706 | Msa1146540:intron | 50.0% | |
| GAGATATCTGGGGGGTTTGT+GGG | + | chr7_4:24281688-24281707 | Msa1146540:intron | 50.0% | |
| ! | TGCAGAGCATCACTCTCCAA+TGG | + | chr7_4:24281937-24281956 | Msa1146540:CDS | 50.0% |
| GCATCACTCTCCAATGGTCA+AGG | + | chr7_4:24281943-24281962 | Msa1146540:CDS | 50.0% | |
| AGGCCCCGCAAATATCTCTA+AGG | + | chr7_4:24281432-24281451 | Msa1146540:intron | 50.0% | |
| GGGCCTTAGAGATATTTGCG+GGG | - | chr7_4:24281438-24281457 | None:intergenic | 50.0% | |
| GGGGCCTTAGAGATATTTGC+GGG | - | chr7_4:24281439-24281458 | None:intergenic | 50.0% | |
| GGGGGCCTTAGAGATATTTG+CGG | - | chr7_4:24281440-24281459 | None:intergenic | 50.0% | |
| TGGGCTTAGAGATATCTGGG+GGG | + | chr7_4:24281680-24281699 | Msa1146540:intron | 50.0% | |
| AGAGATATCTGGGGGGTTTG+TGG | + | chr7_4:24281687-24281706 | Msa1146540:intron | 50.0% | |
| GAGATATCTGGGGGGTTTGT+GGG | + | chr7_4:24281688-24281707 | Msa1146540:intron | 50.0% | |
| ! | TGCAGAGCATCACTCTCCAA+TGG | + | chr7_4:24281937-24281956 | Msa1146540:CDS | 50.0% |
| GCATCACTCTCCAATGGTCA+AGG | + | chr7_4:24281943-24281962 | Msa1146540:CDS | 50.0% | |
| GGGCTTAGCCAAACCCAAAC+TGG | + | chr7_4:24281614-24281633 | Msa1146540:intron | 55.0% | |
| GGGCTTAGCCAAACCCAAAC+TGG | + | chr7_4:24281614-24281633 | Msa1146540:intron | 55.0% | |
| ! | GCCAGTCCGGTTGGTTCACT+CGG | + | chr7_4:24281372-24281391 | Msa1146540:intron | 60.0% |
| ! | GCCAGTCCGGTTGGTTCACT+CGG | + | chr7_4:24281372-24281391 | Msa1146540:intron | 60.0% |
| GCCGAGTGAACCAACCGGAC+TGG | - | chr7_4:24281376-24281395 | None:intergenic | 65.0% | |
| GCCGAGTGAACCAACCGGAC+TGG | - | chr7_4:24281376-24281395 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 24280992 | 24282072 | 24280992 | ID=Msa1146540;Name=Msa1146540 |
| chr7_4 | mRNA | 24280992 | 24282072 | 24280992 | ID=Msa1146540-mRNA-1;Parent=Msa1146540;Name=Msa1146540-mRNA-1;_AED=0.42;_eAED=0.67;_QI=0|0|0|0.5|1|1|2|0|119 |
| chr7_4 | exon | 24280992 | 24281072 | 24280992 | ID=Msa1146540-mRNA-1:exon:6064;Parent=Msa1146540-mRNA-1 |
| chr7_4 | exon | 24281794 | 24282072 | 24281794 | ID=Msa1146540-mRNA-1:exon:6065;Parent=Msa1146540-mRNA-1 |
| chr7_4 | CDS | 24280992 | 24281072 | 24280992 | ID=Msa1146540-mRNA-1:cds;Parent=Msa1146540-mRNA-1 |
| chr7_4 | CDS | 24281794 | 24282072 | 24281794 | ID=Msa1146540-mRNA-1:cds;Parent=Msa1146540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
