AlfalfaGEDB | Msa1146570

M. sativa cultivar zhongmu-4 / Msa1146570

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1146570	AES78893.2	60.177	226	35	2	9	179	99	324	1.53e-78	247

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1146570	G7KVW6	60.177	226	35	2	9	179	99	324	7.33e-79	247

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TFs/TRs:

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Gene ID	Type	Classification
Msa1146570	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1146570	MtrunA17_Chr7g0233561	60.177	226	35	2	9	179	104	329	1.54e-82	247
Msa1146570	MtrunA17_Chr7g0233541	56.388	227	42	4	9	179	72	297	4.06e-74	224
Msa1146570	MtrunA17_Chr3g0131891	51.754	228	53	2	3	179	99	320	5.81e-65	202
Msa1146570	MtrunA17_Chr7g0233531	54.630	216	46	4	9	179	72	280	3.82e-63	196
Msa1146570	MtrunA17_Chr7g0233521	50.446	224	43	3	9	179	72	280	1.43e-60	189
Msa1146570	MtrunA17_Chr7g0233571	56.757	74	29	1	8	78	95	168	9.54e-17	74.7
Msa1146570	MtrunA17_Chr1g0163071	42.222	90	42	3	80	169	215	294	3.32e-14	68.9
Msa1146570	MtrunA17_Chr8g0390841	44.048	84	36	3	80	162	258	331	7.45e-11	60.1
Msa1146570	MtrunA17_Chr1g0208771	38.824	85	41	3	79	162	216	290	9.57e-11	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 31 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGGAAAATCACAGA+AGG	0.656002	7_4:+24352418	Msa1146570:CDS
AAAGTGTTTCTTACAAAACA+AGG	0.608748	7_4:-24357989	None:intergenic
AAATTTGAGGTACAAATCTT+TGG	0.253897	7_4:+24352221	Msa1146570:intron
AAGAAGGTCTCCAATGGTCA+AGG	0.600566	7_4:+24352290	Msa1146570:CDS
AAGGACAATAACTTGAAAGT+TGG	0.499244	7_4:+24358144	Msa1146570:CDS
AATCTTTGGAAAGAGTGCTT+TGG	0.429279	7_4:+24352235	Msa1146570:CDS
AATTTGAACTCACAAGTGGA+TGG	0.599548	7_4:+24358109	Msa1146570:CDS
ACATTGTTGATGAAATTCAA+AGG	0.586074	7_4:-24352372	None:intergenic
AGCAGTAGTTGTGTAAAACA+TGG	0.593692	7_4:+24352404	Msa1146570:CDS
AGGTGTTGAATGGGATAGTT+TGG	0.372373	7_4:+24358046	Msa1146570:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATGGAAAATCACAGA+AGG	+	chr7_4:24352418-24352437	Msa1146570:CDS	30.0%
CAAATTGATAGAATGTCCAA+AGG	+	chr7_4:24352452-24352471	Msa1146570:intron	30.0%
GTCATAAAATCGTATACCTT+TGG	-	chr7_4:24352471-24352490	None:intergenic	30.0%
TAAACACAAATTCCCATGTT+GGG	+	chr7_4:24352773-24352792	Msa1146570:intron	30.0%
GTGATGTGAATTGAAAAAAG+TGG	+	chr7_4:24352806-24352825	Msa1146570:intron	30.0%
TAGTAGTGTTTATATAGTGG+GGG	+	chr7_4:24352858-24352877	Msa1146570:intron	30.0%
TTCTATAAATAGAGAGCTCA+CGG	+	chr7_4:24353265-24353284	Msa1146570:intron	30.0%
TCTTAAAAACATAGTCCCTT+CGG	+	chr7_4:24353508-24353527	Msa1146570:intron	30.0%
TTAAGATCATAGTCCCTATT+TGG	+	chr7_4:24353563-24353582	Msa1146570:intron	30.0%
GGGACATTATTATTCCAAAT+AGG	-	chr7_4:24353580-24353599	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	24352123	24358284	24352123	ID=Msa1146570;Name=Msa1146570
chr7_4	mRNA	24352123	24358284	24352123	ID=Msa1146570-mRNA-1;Parent=Msa1146570;Name=Msa1146570-mRNA-1;_AED=0.18;_eAED=0.22;_QI=0\|0\|0\|1\|0\|0.33\|3\|0\|179
chr7_4	exon	24352123	24352146	24352123	ID=Msa1146570-mRNA-1:exon:6075;Parent=Msa1146570-mRNA-1
chr7_4	exon	24352230	24352439	24352230	ID=Msa1146570-mRNA-1:exon:6076;Parent=Msa1146570-mRNA-1
chr7_4	exon	24357979	24358284	24357979	ID=Msa1146570-mRNA-1:exon:6077;Parent=Msa1146570-mRNA-1
chr7_4	CDS	24352123	24352146	24352123	ID=Msa1146570-mRNA-1:cds;Parent=Msa1146570-mRNA-1
chr7_4	CDS	24352230	24352439	24352230	ID=Msa1146570-mRNA-1:cds;Parent=Msa1146570-mRNA-1
chr7_4	CDS	24357979	24358284	24357979	ID=Msa1146570-mRNA-1:cds;Parent=Msa1146570-mRNA-1

Gene Sequence

>Msa1146570

ATGGCAAGATATGGTTTGAGAAGGGTACAAATCTTTGGAAAGAGTGCTTTGGAGATAAACTACTCTATCAAAAGAGTTGAAGCTAAGAAGGTCTCCAATGGTCAAGGAAATAAACCTCCGAATGCTAAAAATCGTAGAGCAGCTCAAAAGAGGAAAGATAACTCCTCCTTTGAATTTCATCAACAATGTGAAATTGGAAGCAGTAGTTGTGTAAAACATGGAAAATCACAGAAGAATATACCATCCTTGTTTTGTAAGAAACACTTTGATTTGAATAAGAAGAGAGGAGATATTCAACTTCAGGTGTTGAATGGGATAGTTTGGTCTGCTAGGTATTCTATCAAGATGTGCGCTAAAGGACTAAAATTTGAACTCACAAGTGGATGGAAGGCATTTGCAAAGGACAATAACTTGAAAGTTGGTGATGTTTGCAAGTTTGAGCTCATCTCTAGCACTATACTTACCTTCATTGTTCATATCTTTAGAGAGACAGACAATGACAACACAAATTGTTTAACATTTCAAAGTAGGATCAATTGA

Protein sequence

>Msa1146570

MARYGLRRVQIFGKSALEINYSIKRVEAKKVSNGQGNKPPNAKNRRAAQKRKDNSSFEFHQQCEIGSSSCVKHGKSQKNIPSLFCKKHFDLNKKRGDIQLQVLNGIVWSARYSIKMCAKGLKFELTSGWKAFAKDNNLKVGDVCKFELISSTILTFIVHIFRETDNDNTNCLTFQSRIN*