AlfalfaGEDB | Msa1146670

M. sativa cultivar zhongmu-4 / Msa1146670

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1146670	AES78884.2	70.134	298	34	3	1	244	1	297	3.55e-140	405

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1146670	sp\|Q9ZSH7\|Y4158_ARATH	43.182	88	50	0	2	89	46	133	7.81e-17	79.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1146670	G7KVV7	70.134	298	34	3	1	244	1	297	1.69e-140	405

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TFs/TRs:

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Gene ID	Type	Classification
Msa1146670	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1146670	MtrunA17_Chr7g0233541	70.134	298	34	3	1	244	1	297	3.26e-144	405
Msa1146670	MtrunA17_Chr7g0233531	63.322	289	52	3	1	244	1	280	7.86e-123	350
Msa1146670	MtrunA17_Chr7g0233521	59.596	297	50	4	1	244	1	280	1.90e-115	332
Msa1146670	MtrunA17_Chr7g0233561	57.191	299	69	4	2	244	34	329	4.53e-112	325
Msa1146670	MtrunA17_Chr3g0131891	58.983	295	62	3	1	244	34	320	3.50e-111	322
Msa1146670	MtrunA17_Chr7g0233571	69.388	147	38	3	1	143	25	168	4.86e-64	199
Msa1146670	MtrunA17_Chr1g0208771	32.639	288	122	9	2	227	13	290	9.28e-39	140
Msa1146670	MtrunA17_Chr8g0390841	31.206	282	133	7	2	227	55	331	2.23e-34	129
Msa1146670	MtrunA17_Chr1g0163071	31.359	287	137	6	1	227	1	287	4.74e-34	124
Msa1146670	MtrunA17_Chr1g0163231	30.000	260	139	7	2	225	25	277	1.92e-22	93.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1146670	AT4G01580.1	43.182	88	50	0	2	89	46	133	7.94e-18	79.0
Msa1146670	AT3G18990.1	44.578	83	46	0	2	84	22	104	1.04e-17	81.3
Msa1146670	AT3G18990.2	44.578	83	46	0	2	84	22	104	1.14e-17	81.6
Msa1146670	AT3G18960.3	42.045	88	51	0	2	89	9	96	6.71e-17	76.3
Msa1146670	AT3G18960.2	42.045	88	51	0	2	89	46	133	7.35e-17	76.6
Msa1146670	AT3G18960.1	42.045	88	51	0	2	89	46	133	9.67e-17	76.6
Msa1146670	AT1G49475.1	41.860	86	49	1	2	87	50	134	2.96e-16	74.7

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Find 46 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTAATAGGGTCTCCAA+TGG	0.675111	7_4:+24588815	Msa1146670:CDS
AAATATGGCTAGAAAAGGGT+TGG	0.521252	7_4:+24588651	Msa1146670:CDS
AATAGGGTCTCCAATGGTCA+AGG	0.609037	7_4:+24588821	Msa1146670:CDS
AATTTCCACTTTGCACCATT+TGG	0.355722	7_4:-24588605	None:intergenic
AATTTGAACTCACAAGTGGA+TGG	0.615050	7_4:+24589657	Msa1146670:CDS
ACTTTGAGATGCTGAACAAT+TGG	0.487702	7_4:-24589798	None:intergenic
AGAAAGTTTGTGGAGAAATA+TGG	0.293086	7_4:+24588548	Msa1146670:CDS
AGACTCCAAATGGTGCAAAG+TGG	0.616755	7_4:+24588600	Msa1146670:CDS
AGATAAATTACCCTTTCCAA+AGG	0.557884	7_4:+24588780	Msa1146670:CDS
AGGTGTTAAATGAAGGAGTT+TGG	0.387476	7_4:+24589594	Msa1146670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATTTCTCCACAAACTTTCT+TGG	-	chr7_4:24588548-24588567	None:intergenic	30.0%
AGAAAGTTTGTGGAGAAATA+TGG	+	chr7_4:24588548-24588567	Msa1146670:CDS	30.0%
GAAAGGGTAATTTATCTCTA+AGG	-	chr7_4:24588777-24588796	None:intergenic	30.0%
AGATAAATTACCCTTTCCAA+AGG	+	chr7_4:24588780-24588799	Msa1146670:CDS	30.0%
GATAAATTACCCTTTCCAAA+GGG	+	chr7_4:24588781-24588800	Msa1146670:CDS	30.0%
ATGACACAATCTTATACCTT+TGG	-	chr7_4:24589002-24589021	None:intergenic	30.0%
TGTCATCAAAGTTTCAAAAG+TGG	+	chr7_4:24589016-24589035	Msa1146670:intron	30.0%
CTGTTCTACAATAATTCTGA+AGG	-	chr7_4:24589082-24589101	None:intergenic	30.0%
GCATAGTCCTTCATATTAAA+TGG	+	chr7_4:24589428-24589447	Msa1146670:intron	30.0%
TGGTAATAGACACTTTGATT+TGG	+	chr7_4:24589544-24589563	Msa1146670:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	24588539	24589832	24588539	ID=Msa1146670;Name=Msa1146670
chr7_4	mRNA	24588539	24589832	24588539	ID=Msa1146670-mRNA-1;Parent=Msa1146670;Name=Msa1146670-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0\|0\|0\|1\|1\|1\|2\|0\|244
chr7_4	exon	24588539	24588967	24588539	ID=Msa1146670-mRNA-1:exon:6137;Parent=Msa1146670-mRNA-1
chr7_4	exon	24589527	24589832	24589527	ID=Msa1146670-mRNA-1:exon:6138;Parent=Msa1146670-mRNA-1
chr7_4	CDS	24588539	24588967	24588539	ID=Msa1146670-mRNA-1:cds;Parent=Msa1146670-mRNA-1
chr7_4	CDS	24589527	24589832	24589527	ID=Msa1146670-mRNA-1:cds;Parent=Msa1146670-mRNA-1

Gene Sequence

>Msa1146670

ATGATGCCAAGAAAGTTTGTGGAGAAATATGGAGAAGGTTTACCAAAAGCTATATATCTAAAGACTCCAAATGGTGCAAAGTGGAAATTAAATTTGGTAAAAAGTGATGGCAAAATATGGCTAGAAAAGGGTTGGAAAGAATTTGCAGAGTATGACTCTCTAGCTCATGGCCATCTTCTACTTTTCAAATATCAAAGAAATACTCATTTTCTTGTGCACATCTTTGAAAAGAGTGCCTTAGAGATAAATTACCCTTTCCAAAGGGTTGCAGCAGCTAAAGCTAATAGGGTCTCCAATGGTCAAGGAAATAAACCTCCAAATGGTGAAAATTGTAGAGCATCTCAAAAGAGAAAAGATACCTCCTTTGAACTTCATCAACCGCATGAAATTGGAAGCAGTAGTTGTTTTACAGTTGGAAAATTTCAAAAGAATATACCACGTATGTTTGGTAATAGACACTTTGATTTGGATAAGAAGAGAGGAGATATTTATTTTCAGGTGTTAAATGAAGGAGTTTGGCCTGCAAATTACTCTATCAGGAAGATGATTAACGGACTACAATTTGAACTCACAAGTGGATGGAAGGCATTTGCAGAGGACAATAACTTGAAAGTTGGTGATGTTTGCAAGTTTGAGCTCATCTCTAGCACTATATTTAACTTCATCGTTCACATCTTTAGAGAGACAAACAATGACAACACCAATTGTTCAGCATCTCAAAGTAGGATTAATTGA

Protein sequence

>Msa1146670

MMPRKFVEKYGEGLPKAIYLKTPNGAKWKLNLVKSDGKIWLEKGWKEFAEYDSLAHGHLLLFKYQRNTHFLVHIFEKSALEINYPFQRVAAAKANRVSNGQGNKPPNGENCRASQKRKDTSFELHQPHEIGSSSCFTVGKFQKNIPRMFGNRHFDLDKKRGDIYFQVLNEGVWPANYSIRKMINGLQFELTSGWKAFAEDNNLKVGDVCKFELISSTIFNFIVHIFRETNNDNTNCSASQSRIN*