Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146670 | AES78884.2 | 70.134 | 298 | 34 | 3 | 1 | 244 | 1 | 297 | 3.55e-140 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146670 | sp|Q9ZSH7|Y4158_ARATH | 43.182 | 88 | 50 | 0 | 2 | 89 | 46 | 133 | 7.81e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146670 | G7KVV7 | 70.134 | 298 | 34 | 3 | 1 | 244 | 1 | 297 | 1.69e-140 | 405 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1146670 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146670 | MtrunA17_Chr7g0233541 | 70.134 | 298 | 34 | 3 | 1 | 244 | 1 | 297 | 3.26e-144 | 405 |
| Msa1146670 | MtrunA17_Chr7g0233531 | 63.322 | 289 | 52 | 3 | 1 | 244 | 1 | 280 | 7.86e-123 | 350 |
| Msa1146670 | MtrunA17_Chr7g0233521 | 59.596 | 297 | 50 | 4 | 1 | 244 | 1 | 280 | 1.90e-115 | 332 |
| Msa1146670 | MtrunA17_Chr7g0233561 | 57.191 | 299 | 69 | 4 | 2 | 244 | 34 | 329 | 4.53e-112 | 325 |
| Msa1146670 | MtrunA17_Chr3g0131891 | 58.983 | 295 | 62 | 3 | 1 | 244 | 34 | 320 | 3.50e-111 | 322 |
| Msa1146670 | MtrunA17_Chr7g0233571 | 69.388 | 147 | 38 | 3 | 1 | 143 | 25 | 168 | 4.86e-64 | 199 |
| Msa1146670 | MtrunA17_Chr1g0208771 | 32.639 | 288 | 122 | 9 | 2 | 227 | 13 | 290 | 9.28e-39 | 140 |
| Msa1146670 | MtrunA17_Chr8g0390841 | 31.206 | 282 | 133 | 7 | 2 | 227 | 55 | 331 | 2.23e-34 | 129 |
| Msa1146670 | MtrunA17_Chr1g0163071 | 31.359 | 287 | 137 | 6 | 1 | 227 | 1 | 287 | 4.74e-34 | 124 |
| Msa1146670 | MtrunA17_Chr1g0163231 | 30.000 | 260 | 139 | 7 | 2 | 225 | 25 | 277 | 1.92e-22 | 93.2 |
| Msa1146670 | MtrunA17_Chr1g0163181 | 28.070 | 285 | 146 | 6 | 2 | 233 | 21 | 299 | 4.98e-22 | 94.0 |
| Msa1146670 | MtrunA17_Chr5g0429931 | 28.099 | 242 | 154 | 5 | 2 | 230 | 11 | 245 | 8.85e-22 | 90.5 |
| Msa1146670 | MtrunA17_Chr1g0171611 | 29.457 | 258 | 131 | 8 | 2 | 225 | 25 | 265 | 1.44e-21 | 90.9 |
| Msa1146670 | MtrunA17_Chr3g0103191 | 48.193 | 83 | 43 | 0 | 2 | 84 | 26 | 108 | 1.47e-21 | 90.1 |
| Msa1146670 | MtrunA17_Chr1g0163201 | 28.467 | 274 | 141 | 7 | 2 | 227 | 19 | 285 | 5.54e-21 | 90.9 |
| Msa1146670 | MtrunA17_Chr3g0103171 | 27.341 | 267 | 145 | 9 | 2 | 226 | 6 | 265 | 6.66e-21 | 88.6 |
| Msa1146670 | MtrunA17_Chr3g0103151 | 46.988 | 83 | 44 | 0 | 2 | 84 | 26 | 108 | 1.75e-20 | 85.1 |
| Msa1146670 | MtrunA17_Chr5g0419201 | 41.667 | 84 | 49 | 0 | 1 | 84 | 31 | 114 | 2.37e-20 | 85.5 |
| Msa1146670 | MtrunA17_Chr3g0103181 | 48.193 | 83 | 43 | 0 | 2 | 84 | 26 | 108 | 5.79e-20 | 86.3 |
| Msa1146670 | MtrunA17_Chr3g0077451 | 24.675 | 231 | 167 | 3 | 2 | 230 | 12 | 237 | 1.37e-19 | 84.7 |
| Msa1146670 | MtrunA17_Chr3g0077411 | 27.907 | 215 | 134 | 6 | 2 | 214 | 41 | 236 | 1.92e-19 | 87.0 |
| Msa1146670 | MtrunA17_Chr3g0077411 | 23.729 | 236 | 148 | 6 | 2 | 214 | 278 | 504 | 5.77e-16 | 76.6 |
| Msa1146670 | MtrunA17_Chr1g0163221 | 28.516 | 256 | 133 | 9 | 2 | 213 | 27 | 276 | 7.29e-19 | 84.3 |
| Msa1146670 | MtrunA17_Chr3g0077461 | 31.163 | 215 | 134 | 4 | 2 | 214 | 253 | 455 | 1.08e-18 | 84.7 |
| Msa1146670 | MtrunA17_Chr3g0077461 | 28.571 | 217 | 123 | 6 | 2 | 214 | 23 | 211 | 3.76e-18 | 83.2 |
| Msa1146670 | MtrunA17_Chr1g0163241 | 34.932 | 146 | 81 | 4 | 2 | 136 | 23 | 165 | 2.33e-18 | 79.7 |
| Msa1146670 | MtrunA17_Chr1g0162441 | 39.759 | 83 | 50 | 0 | 2 | 84 | 23 | 105 | 5.32e-17 | 79.7 |
| Msa1146670 | MtrunA17_Chr3g0077361 | 27.442 | 215 | 137 | 6 | 2 | 214 | 56 | 253 | 9.05e-17 | 79.0 |
| Msa1146670 | MtrunA17_Chr1g0163251 | 46.988 | 83 | 42 | 1 | 2 | 84 | 21 | 101 | 1.04e-16 | 78.6 |
| Msa1146670 | MtrunA17_Chr4g0033961 | 40.449 | 89 | 51 | 1 | 2 | 88 | 22 | 110 | 1.09e-16 | 78.6 |
| Msa1146670 | MtrunA17_Chr4g0009491 | 27.184 | 206 | 132 | 5 | 2 | 206 | 13 | 201 | 1.15e-16 | 78.6 |
| Msa1146670 | MtrunA17_Chr4g0009491 | 33.663 | 101 | 64 | 1 | 5 | 105 | 244 | 341 | 5.04e-12 | 65.1 |
| Msa1146670 | MtrunA17_Chr3g0077381 | 25.926 | 243 | 131 | 8 | 2 | 242 | 36 | 231 | 1.88e-16 | 78.2 |
| Msa1146670 | MtrunA17_Chr1g0163121 | 46.591 | 88 | 44 | 2 | 1 | 88 | 10 | 94 | 3.88e-16 | 73.2 |
| Msa1146670 | MtrunA17_Chr1g0163141 | 43.158 | 95 | 51 | 2 | 1 | 95 | 10 | 101 | 5.25e-16 | 73.6 |
| Msa1146670 | MtrunA17_Chr1g0163191 | 42.169 | 83 | 46 | 1 | 2 | 84 | 21 | 101 | 2.66e-15 | 71.2 |
| Msa1146670 | MtrunA17_Chr4g0067431 | 26.909 | 275 | 130 | 10 | 2 | 213 | 31 | 297 | 3.57e-15 | 73.6 |
| Msa1146670 | MtrunA17_Chr1g0163261 | 25.641 | 273 | 156 | 7 | 2 | 234 | 25 | 290 | 1.39e-14 | 71.6 |
| Msa1146670 | MtrunA17_Chr1g0163101 | 45.238 | 84 | 43 | 2 | 1 | 84 | 32 | 112 | 1.57e-14 | 69.7 |
| Msa1146670 | MtrunA17_Chr6g0476181 | 44.048 | 84 | 44 | 2 | 1 | 84 | 1 | 81 | 2.86e-13 | 65.9 |
| Msa1146670 | MtrunA17_Chr1g0162161 | 31.343 | 134 | 75 | 5 | 1 | 134 | 3 | 119 | 1.15e-12 | 63.9 |
| Msa1146670 | MtrunA17_Chr1g0162411 | 36.145 | 83 | 51 | 1 | 2 | 84 | 23 | 103 | 2.00e-12 | 66.2 |
| Msa1146670 | MtrunA17_Chr3g0077431 | 24.631 | 203 | 146 | 3 | 30 | 230 | 1 | 198 | 2.03e-12 | 64.3 |
| Msa1146670 | MtrunA17_Chr6g0467351 | 35.556 | 90 | 57 | 1 | 2 | 90 | 31 | 120 | 3.37e-12 | 63.9 |
| Msa1146670 | MtrunA17_Chr1g0163131 | 41.667 | 84 | 46 | 2 | 1 | 84 | 33 | 113 | 5.57e-12 | 64.3 |
| Msa1146670 | MtrunA17_Chr3g0077421 | 26.415 | 212 | 126 | 6 | 30 | 227 | 1 | 196 | 1.56e-11 | 61.6 |
| Msa1146670 | MtrunA17_Chr3g0077441 | 26.415 | 212 | 126 | 6 | 30 | 227 | 1 | 196 | 1.56e-11 | 61.6 |
| Msa1146670 | MtrunA17_Chr1g0154131 | 26.050 | 238 | 152 | 9 | 2 | 223 | 41 | 270 | 1.61e-11 | 63.5 |
| Msa1146670 | MtrunA17_Chr1g0163081 | 39.326 | 89 | 51 | 2 | 1 | 89 | 5 | 90 | 2.14e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146670 | AT4G01580.1 | 43.182 | 88 | 50 | 0 | 2 | 89 | 46 | 133 | 7.94e-18 | 79.0 |
| Msa1146670 | AT3G18990.1 | 44.578 | 83 | 46 | 0 | 2 | 84 | 22 | 104 | 1.04e-17 | 81.3 |
| Msa1146670 | AT3G18990.2 | 44.578 | 83 | 46 | 0 | 2 | 84 | 22 | 104 | 1.14e-17 | 81.6 |
| Msa1146670 | AT3G18960.3 | 42.045 | 88 | 51 | 0 | 2 | 89 | 9 | 96 | 6.71e-17 | 76.3 |
| Msa1146670 | AT3G18960.2 | 42.045 | 88 | 51 | 0 | 2 | 89 | 46 | 133 | 7.35e-17 | 76.6 |
| Msa1146670 | AT3G18960.1 | 42.045 | 88 | 51 | 0 | 2 | 89 | 46 | 133 | 9.67e-17 | 76.6 |
| Msa1146670 | AT1G49475.1 | 41.860 | 86 | 49 | 1 | 2 | 87 | 50 | 134 | 2.96e-16 | 74.7 |
Find 46 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTCTCCACAAACTTTCT+TGG | 0.217927 | 7_4:-24588545 | None:intergenic |
| CTTCATCAACCGCATGAAAT+TGG | 0.235767 | 7_4:+24588908 | Msa1146670:CDS |
| TGCAAAGTGGAAATTAAATT+TGG | 0.244297 | 7_4:+24588613 | Msa1146670:CDS |
| GTCTTTAGATATATAGCTTT+TGG | 0.277539 | 7_4:-24588581 | None:intergenic |
| TTGCAGCAGCTAAAGCTAAT+AGG | 0.287785 | 7_4:+24588804 | Msa1146670:CDS |
| AGAAAGTTTGTGGAGAAATA+TGG | 0.293086 | 7_4:+24588548 | Msa1146670:CDS |
| GAAAGGGTAATTTATCTCTA+AGG | 0.313872 | 7_4:-24588774 | None:intergenic |
| GGCCTGCAAATTACTCTATC+AGG | 0.314599 | 7_4:+24589615 | Msa1146670:CDS |
| AATTTCCACTTTGCACCATT+TGG | 0.355722 | 7_4:-24588605 | None:intergenic |
| AGGTGTTAAATGAAGGAGTT+TGG | 0.387476 | 7_4:+24589594 | Msa1146670:CDS |
| TGGTAATAGACACTTTGATT+TGG | 0.391800 | 7_4:+24589544 | Msa1146670:CDS |
| CTTTAGCTGCTGCAACCCTT+TGG | 0.398095 | 7_4:-24588796 | None:intergenic |
| TTCCTGATAGAGTAATTTGC+AGG | 0.404206 | 7_4:-24589617 | None:intergenic |
| CAGAATATACCACGTATGTT+TGG | 0.412403 | 7_4:+24589524 | Msa1146670:intron |
| TGGCAAAATATGGCTAGAAA+AGG | 0.444371 | 7_4:+24588646 | Msa1146670:CDS |
| GATATTTGAAAAGTAGAAGA+TGG | 0.444803 | 7_4:-24588709 | None:intergenic |
| GATGATGCCAAGAAAGTTTG+TGG | 0.445895 | 7_4:+24588538 | None:intergenic |
| TGCAGCAGCTAAAGCTAATA+GGG | 0.447144 | 7_4:+24588805 | Msa1146670:CDS |
| ACTTTGAGATGCTGAACAAT+TGG | 0.487702 | 7_4:-24589798 | None:intergenic |
| CTGCTGCAACCCTTTGGAAA+GGG | 0.490756 | 7_4:-24588790 | None:intergenic |
| ATTGTTCAGCATCTCAAAGT+AGG | 0.493760 | 7_4:+24589801 | Msa1146670:CDS |
| GATAAATTACCCTTTCCAAA+GGG | 0.497908 | 7_4:+24588781 | Msa1146670:CDS |
| TACAGTTGGAAAATTTCAAA+AGG | 0.500148 | 7_4:+24588946 | Msa1146670:CDS |
| AGGTTTATTTCCTTGACCAT+TGG | 0.507461 | 7_4:-24588831 | None:intergenic |
| TCTATCAGGAAGATGATTAA+CGG | 0.510340 | 7_4:+24589629 | Msa1146670:CDS |
| CAAGGAAATAAACCTCCAAA+TGG | 0.511352 | 7_4:+24588839 | Msa1146670:CDS |
| GGCAAAATATGGCTAGAAAA+GGG | 0.518770 | 7_4:+24588647 | Msa1146670:CDS |
| ATATATCTAAAGACTCCAAA+TGG | 0.520261 | 7_4:+24588590 | Msa1146670:CDS |
| AAATATGGCTAGAAAAGGGT+TGG | 0.521252 | 7_4:+24588651 | Msa1146670:CDS |
| GAGGACAATAACTTGAAAGT+TGG | 0.523457 | 7_4:+24589692 | Msa1146670:CDS |
| GCTGCTGCAACCCTTTGGAA+AGG | 0.547388 | 7_4:-24588791 | None:intergenic |
| AGATAAATTACCCTTTCCAA+AGG | 0.557884 | 7_4:+24588780 | Msa1146670:CDS |
| ATGCGGTTGATGAAGTTCAA+AGG | 0.562344 | 7_4:-24588900 | None:intergenic |
| TGAACTCACAAGTGGATGGA+AGG | 0.567593 | 7_4:+24589661 | Msa1146670:CDS |
| GAGTATGACTCTCTAGCTCA+TGG | 0.573500 | 7_4:+24588686 | Msa1146670:CDS |
| TTTGATTTGGATAAGAAGAG+AGG | 0.576081 | 7_4:+24589557 | Msa1146670:CDS |
| TTTGTGGAGAAATATGGAGA+AGG | 0.578281 | 7_4:+24588554 | Msa1146670:CDS |
| CTACAATTTGAACTCACAAG+TGG | 0.600885 | 7_4:+24589653 | Msa1146670:CDS |
| AATAGGGTCTCCAATGGTCA+AGG | 0.609037 | 7_4:+24588821 | Msa1146670:CDS |
| AATTTGAACTCACAAGTGGA+TGG | 0.615050 | 7_4:+24589657 | Msa1146670:CDS |
| AGACTCCAAATGGTGCAAAG+TGG | 0.616755 | 7_4:+24588600 | Msa1146670:CDS |
| CTACTGCTTCCAATTTCATG+CGG | 0.623346 | 7_4:-24588917 | None:intergenic |
| TGGATGGAAGGCATTTGCAG+AGG | 0.673309 | 7_4:+24589673 | Msa1146670:CDS |
| AAAGCTAATAGGGTCTCCAA+TGG | 0.675111 | 7_4:+24588815 | Msa1146670:CDS |
| CGGTTGATGAAGTTCAAAGG+AGG | 0.683641 | 7_4:-24588897 | None:intergenic |
| TGTCTATTACCAAACATACG+TGG | 0.737084 | 7_4:-24589533 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTAAATTTAAA+CGG | + | chr7_4:24589169-24589188 | Msa1146670:intron | 0.0% |
| !!! | TTTTTTTTTTTAAATTTAAA+CGG | + | chr7_4:24589169-24589188 | Msa1146670:intron | 0.0% |
| !! | AATATTAAAAAAATTGGAGA+AGG | - | chr7_4:24589140-24589159 | None:intergenic | 15.0% |
| !! | AAATATGTATTAATCAAGAT+CGG | - | chr7_4:24589271-24589290 | None:intergenic | 15.0% |
| !!! | TTTTAAACCATTTAATATGA+AGG | - | chr7_4:24589438-24589457 | None:intergenic | 15.0% |
| !! | AATATTAAAAAAATTGGAGA+AGG | - | chr7_4:24589140-24589159 | None:intergenic | 15.0% |
| !! | AAATATGTATTAATCAAGAT+CGG | - | chr7_4:24589271-24589290 | None:intergenic | 15.0% |
| !!! | TTTTAAACCATTTAATATGA+AGG | - | chr7_4:24589438-24589457 | None:intergenic | 15.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | + | chr7_4:24588626-24588645 | Msa1146670:CDS | 20.0% |
| !! | TAAATTACATGAGTTGTTAA+TGG | + | chr7_4:24589042-24589061 | Msa1146670:intron | 20.0% |
| !! | TTAATTAAAAGTTGCACAAA+TGG | - | chr7_4:24589105-24589124 | None:intergenic | 20.0% |
| !!! | ACATTGTCTTTTCTTTTAAT+TGG | + | chr7_4:24589501-24589520 | Msa1146670:intron | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | + | chr7_4:24588626-24588645 | Msa1146670:CDS | 20.0% |
| !! | TAAATTACATGAGTTGTTAA+TGG | + | chr7_4:24589042-24589061 | Msa1146670:intron | 20.0% |
| !! | TTAATTAAAAGTTGCACAAA+TGG | - | chr7_4:24589105-24589124 | None:intergenic | 20.0% |
| !!! | ACATTGTCTTTTCTTTTAAT+TGG | + | chr7_4:24589501-24589520 | Msa1146670:intron | 20.0% |
| !! | GTCTTTAGATATATAGCTTT+TGG | - | chr7_4:24588584-24588603 | None:intergenic | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | + | chr7_4:24588590-24588609 | Msa1146670:CDS | 25.0% |
| ! | TGCAAAGTGGAAATTAAATT+TGG | + | chr7_4:24588613-24588632 | Msa1146670:CDS | 25.0% |
| ! | TAAAAAGTGATGGCAAAATA+TGG | + | chr7_4:24588636-24588655 | Msa1146670:CDS | 25.0% |
| ! | GATATTTGAAAAGTAGAAGA+TGG | - | chr7_4:24588712-24588731 | None:intergenic | 25.0% |
| ! | TACAGTTGGAAAATTTCAAA+AGG | + | chr7_4:24588946-24588965 | Msa1146670:CDS | 25.0% |
| ! | TGTTCTACAATAATTCTGAA+GGG | - | chr7_4:24589081-24589100 | None:intergenic | 25.0% |
| !!! | TATTTTCAGGTGTTAAATGA+AGG | + | chr7_4:24589587-24589606 | Msa1146670:CDS | 25.0% |
| !! | GTCTTTAGATATATAGCTTT+TGG | - | chr7_4:24588584-24588603 | None:intergenic | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | + | chr7_4:24588590-24588609 | Msa1146670:CDS | 25.0% |
| ! | TGCAAAGTGGAAATTAAATT+TGG | + | chr7_4:24588613-24588632 | Msa1146670:CDS | 25.0% |
| ! | TAAAAAGTGATGGCAAAATA+TGG | + | chr7_4:24588636-24588655 | Msa1146670:CDS | 25.0% |
| ! | GATATTTGAAAAGTAGAAGA+TGG | - | chr7_4:24588712-24588731 | None:intergenic | 25.0% |
| ! | TACAGTTGGAAAATTTCAAA+AGG | + | chr7_4:24588946-24588965 | Msa1146670:CDS | 25.0% |
| ! | TGTTCTACAATAATTCTGAA+GGG | - | chr7_4:24589081-24589100 | None:intergenic | 25.0% |
| !!! | TATTTTCAGGTGTTAAATGA+AGG | + | chr7_4:24589587-24589606 | Msa1146670:CDS | 25.0% |
| TATTTCTCCACAAACTTTCT+TGG | - | chr7_4:24588548-24588567 | None:intergenic | 30.0% | |
| AGAAAGTTTGTGGAGAAATA+TGG | + | chr7_4:24588548-24588567 | Msa1146670:CDS | 30.0% | |
| GAAAGGGTAATTTATCTCTA+AGG | - | chr7_4:24588777-24588796 | None:intergenic | 30.0% | |
| AGATAAATTACCCTTTCCAA+AGG | + | chr7_4:24588780-24588799 | Msa1146670:CDS | 30.0% | |
| GATAAATTACCCTTTCCAAA+GGG | + | chr7_4:24588781-24588800 | Msa1146670:CDS | 30.0% | |
| ATGACACAATCTTATACCTT+TGG | - | chr7_4:24589002-24589021 | None:intergenic | 30.0% | |
| TGTCATCAAAGTTTCAAAAG+TGG | + | chr7_4:24589016-24589035 | Msa1146670:intron | 30.0% | |
| CTGTTCTACAATAATTCTGA+AGG | - | chr7_4:24589082-24589101 | None:intergenic | 30.0% | |
| ! | TAATCATGATGTCACTTGTT+AGG | - | chr7_4:24589375-24589394 | None:intergenic | 30.0% |
| GCATAGTCCTTCATATTAAA+TGG | + | chr7_4:24589428-24589447 | Msa1146670:intron | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | + | chr7_4:24589544-24589563 | Msa1146670:CDS | 30.0% | |
| !! | TTTGATTTGGATAAGAAGAG+AGG | + | chr7_4:24589557-24589576 | Msa1146670:CDS | 30.0% |
| !! | GAGAGGAGATATTTATTTTC+AGG | + | chr7_4:24589574-24589593 | Msa1146670:CDS | 30.0% |
| TCTATCAGGAAGATGATTAA+CGG | + | chr7_4:24589629-24589648 | Msa1146670:CDS | 30.0% | |
| TATTTCTCCACAAACTTTCT+TGG | - | chr7_4:24588548-24588567 | None:intergenic | 30.0% | |
| AGAAAGTTTGTGGAGAAATA+TGG | + | chr7_4:24588548-24588567 | Msa1146670:CDS | 30.0% | |
| GAAAGGGTAATTTATCTCTA+AGG | - | chr7_4:24588777-24588796 | None:intergenic | 30.0% | |
| AGATAAATTACCCTTTCCAA+AGG | + | chr7_4:24588780-24588799 | Msa1146670:CDS | 30.0% | |
| GATAAATTACCCTTTCCAAA+GGG | + | chr7_4:24588781-24588800 | Msa1146670:CDS | 30.0% | |
| ATGACACAATCTTATACCTT+TGG | - | chr7_4:24589002-24589021 | None:intergenic | 30.0% | |
| TGTCATCAAAGTTTCAAAAG+TGG | + | chr7_4:24589016-24589035 | Msa1146670:intron | 30.0% | |
| CTGTTCTACAATAATTCTGA+AGG | - | chr7_4:24589082-24589101 | None:intergenic | 30.0% | |
| ! | TAATCATGATGTCACTTGTT+AGG | - | chr7_4:24589375-24589394 | None:intergenic | 30.0% |
| GCATAGTCCTTCATATTAAA+TGG | + | chr7_4:24589428-24589447 | Msa1146670:intron | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | + | chr7_4:24589544-24589563 | Msa1146670:CDS | 30.0% | |
| !! | TTTGATTTGGATAAGAAGAG+AGG | + | chr7_4:24589557-24589576 | Msa1146670:CDS | 30.0% |
| !! | GAGAGGAGATATTTATTTTC+AGG | + | chr7_4:24589574-24589593 | Msa1146670:CDS | 30.0% |
| TCTATCAGGAAGATGATTAA+CGG | + | chr7_4:24589629-24589648 | Msa1146670:CDS | 30.0% | |
| TTTGTGGAGAAATATGGAGA+AGG | + | chr7_4:24588554-24588573 | Msa1146670:CDS | 35.0% | |
| AATTTCCACTTTGCACCATT+TGG | - | chr7_4:24588608-24588627 | None:intergenic | 35.0% | |
| TGGCAAAATATGGCTAGAAA+AGG | + | chr7_4:24588646-24588665 | Msa1146670:CDS | 35.0% | |
| GGCAAAATATGGCTAGAAAA+GGG | + | chr7_4:24588647-24588666 | Msa1146670:CDS | 35.0% | |
| AAATATGGCTAGAAAAGGGT+TGG | + | chr7_4:24588651-24588670 | Msa1146670:CDS | 35.0% | |
| AGGTTTATTTCCTTGACCAT+TGG | - | chr7_4:24588834-24588853 | None:intergenic | 35.0% | |
| CAAGGAAATAAACCTCCAAA+TGG | + | chr7_4:24588839-24588858 | Msa1146670:CDS | 35.0% | |
| ! | CTACAATTTTCACCATTTGG+AGG | - | chr7_4:24588854-24588873 | None:intergenic | 35.0% |
| ! | GCTCTACAATTTTCACCATT+TGG | - | chr7_4:24588857-24588876 | None:intergenic | 35.0% |
| !! | AGCAGTAGTTGTTTTACAGT+TGG | + | chr7_4:24588932-24588951 | Msa1146670:CDS | 35.0% |
| CAGAATATACCACGTATGTT+TGG | + | chr7_4:24589524-24589543 | Msa1146670:intron | 35.0% | |
| TGTCTATTACCAAACATACG+TGG | - | chr7_4:24589536-24589555 | None:intergenic | 35.0% | |
| AGGTGTTAAATGAAGGAGTT+TGG | + | chr7_4:24589594-24589613 | Msa1146670:CDS | 35.0% | |
| ! | TTCCTGATAGAGTAATTTGC+AGG | - | chr7_4:24589620-24589639 | None:intergenic | 35.0% |
| CTACAATTTGAACTCACAAG+TGG | + | chr7_4:24589653-24589672 | Msa1146670:CDS | 35.0% | |
| AATTTGAACTCACAAGTGGA+TGG | + | chr7_4:24589657-24589676 | Msa1146670:CDS | 35.0% | |
| GAGGACAATAACTTGAAAGT+TGG | + | chr7_4:24589692-24589711 | Msa1146670:CDS | 35.0% | |
| !! | ACTTTGAGATGCTGAACAAT+TGG | - | chr7_4:24589801-24589820 | None:intergenic | 35.0% |
| ATTGTTCAGCATCTCAAAGT+AGG | + | chr7_4:24589801-24589820 | Msa1146670:CDS | 35.0% | |
| TTTGTGGAGAAATATGGAGA+AGG | + | chr7_4:24588554-24588573 | Msa1146670:CDS | 35.0% | |
| AATTTCCACTTTGCACCATT+TGG | - | chr7_4:24588608-24588627 | None:intergenic | 35.0% | |
| TGGCAAAATATGGCTAGAAA+AGG | + | chr7_4:24588646-24588665 | Msa1146670:CDS | 35.0% | |
| GGCAAAATATGGCTAGAAAA+GGG | + | chr7_4:24588647-24588666 | Msa1146670:CDS | 35.0% | |
| AAATATGGCTAGAAAAGGGT+TGG | + | chr7_4:24588651-24588670 | Msa1146670:CDS | 35.0% | |
| AGGTTTATTTCCTTGACCAT+TGG | - | chr7_4:24588834-24588853 | None:intergenic | 35.0% | |
| CAAGGAAATAAACCTCCAAA+TGG | + | chr7_4:24588839-24588858 | Msa1146670:CDS | 35.0% | |
| ! | CTACAATTTTCACCATTTGG+AGG | - | chr7_4:24588854-24588873 | None:intergenic | 35.0% |
| ! | GCTCTACAATTTTCACCATT+TGG | - | chr7_4:24588857-24588876 | None:intergenic | 35.0% |
| !! | AGCAGTAGTTGTTTTACAGT+TGG | + | chr7_4:24588932-24588951 | Msa1146670:CDS | 35.0% |
| CAGAATATACCACGTATGTT+TGG | + | chr7_4:24589524-24589543 | Msa1146670:intron | 35.0% | |
| TGTCTATTACCAAACATACG+TGG | - | chr7_4:24589536-24589555 | None:intergenic | 35.0% | |
| AGGTGTTAAATGAAGGAGTT+TGG | + | chr7_4:24589594-24589613 | Msa1146670:CDS | 35.0% | |
| ! | TTCCTGATAGAGTAATTTGC+AGG | - | chr7_4:24589620-24589639 | None:intergenic | 35.0% |
| CTACAATTTGAACTCACAAG+TGG | + | chr7_4:24589653-24589672 | Msa1146670:CDS | 35.0% | |
| AATTTGAACTCACAAGTGGA+TGG | + | chr7_4:24589657-24589676 | Msa1146670:CDS | 35.0% | |
| GAGGACAATAACTTGAAAGT+TGG | + | chr7_4:24589692-24589711 | Msa1146670:CDS | 35.0% | |
| !! | ACTTTGAGATGCTGAACAAT+TGG | - | chr7_4:24589801-24589820 | None:intergenic | 35.0% |
| ATTGTTCAGCATCTCAAAGT+AGG | + | chr7_4:24589801-24589820 | Msa1146670:CDS | 35.0% | |
| TTGCAGCAGCTAAAGCTAAT+AGG | + | chr7_4:24588804-24588823 | Msa1146670:CDS | 40.0% | |
| TGCAGCAGCTAAAGCTAATA+GGG | + | chr7_4:24588805-24588824 | Msa1146670:CDS | 40.0% | |
| AAAGCTAATAGGGTCTCCAA+TGG | + | chr7_4:24588815-24588834 | Msa1146670:CDS | 40.0% | |
| !! | ATGCGGTTGATGAAGTTCAA+AGG | - | chr7_4:24588903-24588922 | None:intergenic | 40.0% |
| CTTCATCAACCGCATGAAAT+TGG | + | chr7_4:24588908-24588927 | Msa1146670:CDS | 40.0% | |
| CTACTGCTTCCAATTTCATG+CGG | - | chr7_4:24588920-24588939 | None:intergenic | 40.0% | |
| TACGCATGCACCTCATATTT+AGG | + | chr7_4:24589193-24589212 | Msa1146670:intron | 40.0% | |
| ATGCACCTCATATTTAGGAG+AGG | + | chr7_4:24589198-24589217 | Msa1146670:intron | 40.0% | |
| TGCACCTCATATTTAGGAGA+GGG | + | chr7_4:24589199-24589218 | Msa1146670:intron | 40.0% | |
| TATCCCCTCTCCTAAATATG+AGG | - | chr7_4:24589206-24589225 | None:intergenic | 40.0% | |
| TTGCAGCAGCTAAAGCTAAT+AGG | + | chr7_4:24588804-24588823 | Msa1146670:CDS | 40.0% | |
| TGCAGCAGCTAAAGCTAATA+GGG | + | chr7_4:24588805-24588824 | Msa1146670:CDS | 40.0% | |
| AAAGCTAATAGGGTCTCCAA+TGG | + | chr7_4:24588815-24588834 | Msa1146670:CDS | 40.0% | |
| !! | ATGCGGTTGATGAAGTTCAA+AGG | - | chr7_4:24588903-24588922 | None:intergenic | 40.0% |
| CTTCATCAACCGCATGAAAT+TGG | + | chr7_4:24588908-24588927 | Msa1146670:CDS | 40.0% | |
| CTACTGCTTCCAATTTCATG+CGG | - | chr7_4:24588920-24588939 | None:intergenic | 40.0% | |
| TACGCATGCACCTCATATTT+AGG | + | chr7_4:24589193-24589212 | Msa1146670:intron | 40.0% | |
| ATGCACCTCATATTTAGGAG+AGG | + | chr7_4:24589198-24589217 | Msa1146670:intron | 40.0% | |
| TGCACCTCATATTTAGGAGA+GGG | + | chr7_4:24589199-24589218 | Msa1146670:intron | 40.0% | |
| TATCCCCTCTCCTAAATATG+AGG | - | chr7_4:24589206-24589225 | None:intergenic | 40.0% | |
| AGACTCCAAATGGTGCAAAG+TGG | + | chr7_4:24588600-24588619 | Msa1146670:CDS | 45.0% | |
| ! | GAGTATGACTCTCTAGCTCA+TGG | + | chr7_4:24588686-24588705 | Msa1146670:CDS | 45.0% |
| AATAGGGTCTCCAATGGTCA+AGG | + | chr7_4:24588821-24588840 | Msa1146670:CDS | 45.0% | |
| !! | CGGTTGATGAAGTTCAAAGG+AGG | - | chr7_4:24588900-24588919 | None:intergenic | 45.0% |
| GTAGCATCTATGCATCATGC+TGG | + | chr7_4:24588968-24588987 | Msa1146670:intron | 45.0% | |
| GCACCTCATATTTAGGAGAG+GGG | + | chr7_4:24589200-24589219 | Msa1146670:intron | 45.0% | |
| !! | CAGGGACTAGTTGGTATCAA+CGG | - | chr7_4:24589320-24589339 | None:intergenic | 45.0% |
| ! | ATTGCTCAACAGGGACTAGT+TGG | - | chr7_4:24589329-24589348 | None:intergenic | 45.0% |
| TAGGATTGTCCCTTTGAGCT+GGG | - | chr7_4:24589356-24589375 | None:intergenic | 45.0% | |
| TTAGGATTGTCCCTTTGAGC+TGG | - | chr7_4:24589357-24589376 | None:intergenic | 45.0% | |
| GGCCTGCAAATTACTCTATC+AGG | + | chr7_4:24589615-24589634 | Msa1146670:CDS | 45.0% | |
| TGAACTCACAAGTGGATGGA+AGG | + | chr7_4:24589661-24589680 | Msa1146670:CDS | 45.0% | |
| AGACTCCAAATGGTGCAAAG+TGG | + | chr7_4:24588600-24588619 | Msa1146670:CDS | 45.0% | |
| ! | GAGTATGACTCTCTAGCTCA+TGG | + | chr7_4:24588686-24588705 | Msa1146670:CDS | 45.0% |
| AATAGGGTCTCCAATGGTCA+AGG | + | chr7_4:24588821-24588840 | Msa1146670:CDS | 45.0% | |
| !! | CGGTTGATGAAGTTCAAAGG+AGG | - | chr7_4:24588900-24588919 | None:intergenic | 45.0% |
| GTAGCATCTATGCATCATGC+TGG | + | chr7_4:24588968-24588987 | Msa1146670:intron | 45.0% | |
| GCACCTCATATTTAGGAGAG+GGG | + | chr7_4:24589200-24589219 | Msa1146670:intron | 45.0% | |
| !! | CAGGGACTAGTTGGTATCAA+CGG | - | chr7_4:24589320-24589339 | None:intergenic | 45.0% |
| ! | ATTGCTCAACAGGGACTAGT+TGG | - | chr7_4:24589329-24589348 | None:intergenic | 45.0% |
| TAGGATTGTCCCTTTGAGCT+GGG | - | chr7_4:24589356-24589375 | None:intergenic | 45.0% | |
| TTAGGATTGTCCCTTTGAGC+TGG | - | chr7_4:24589357-24589376 | None:intergenic | 45.0% | |
| GGCCTGCAAATTACTCTATC+AGG | + | chr7_4:24589615-24589634 | Msa1146670:CDS | 45.0% | |
| TGAACTCACAAGTGGATGGA+AGG | + | chr7_4:24589661-24589680 | Msa1146670:CDS | 45.0% | |
| !! | AAAACTAATATTAAAAAAAT+TGG | - | chr7_4:24589146-24589165 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTAAATTTAAAC+GGG | + | chr7_4:24589170-24589189 | Msa1146670:intron | 5.0% |
| !! | AAAACTAATATTAAAAAAAT+TGG | - | chr7_4:24589146-24589165 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTAAATTTAAAC+GGG | + | chr7_4:24589170-24589189 | Msa1146670:intron | 5.0% |
| ! | CTGCTGCAACCCTTTGGAAA+GGG | - | chr7_4:24588793-24588812 | None:intergenic | 50.0% |
| CTTTAGCTGCTGCAACCCTT+TGG | - | chr7_4:24588799-24588818 | None:intergenic | 50.0% | |
| CTGGGCACAATTGCTCAACA+GGG | - | chr7_4:24589338-24589357 | None:intergenic | 50.0% | |
| AGCAATTGTGCCCAGCTCAA+AGG | + | chr7_4:24589343-24589362 | Msa1146670:intron | 50.0% | |
| GCAATTGTGCCCAGCTCAAA+GGG | + | chr7_4:24589344-24589363 | Msa1146670:intron | 50.0% | |
| !! | TGGATGGAAGGCATTTGCAG+AGG | + | chr7_4:24589673-24589692 | Msa1146670:CDS | 50.0% |
| ! | CTGCTGCAACCCTTTGGAAA+GGG | - | chr7_4:24588793-24588812 | None:intergenic | 50.0% |
| CTTTAGCTGCTGCAACCCTT+TGG | - | chr7_4:24588799-24588818 | None:intergenic | 50.0% | |
| CTGGGCACAATTGCTCAACA+GGG | - | chr7_4:24589338-24589357 | None:intergenic | 50.0% | |
| AGCAATTGTGCCCAGCTCAA+AGG | + | chr7_4:24589343-24589362 | Msa1146670:intron | 50.0% | |
| GCAATTGTGCCCAGCTCAAA+GGG | + | chr7_4:24589344-24589363 | Msa1146670:intron | 50.0% | |
| !! | TGGATGGAAGGCATTTGCAG+AGG | + | chr7_4:24589673-24589692 | Msa1146670:CDS | 50.0% |
| ! | GCTGCTGCAACCCTTTGGAA+AGG | - | chr7_4:24588794-24588813 | None:intergenic | 55.0% |
| CATGCTGGCAGAGAGTCCAA+AGG | + | chr7_4:24588983-24589002 | Msa1146670:intron | 55.0% | |
| GCTGGGCACAATTGCTCAAC+AGG | - | chr7_4:24589339-24589358 | None:intergenic | 55.0% | |
| ! | GCTGCTGCAACCCTTTGGAA+AGG | - | chr7_4:24588794-24588813 | None:intergenic | 55.0% |
| CATGCTGGCAGAGAGTCCAA+AGG | + | chr7_4:24588983-24589002 | Msa1146670:intron | 55.0% | |
| GCTGGGCACAATTGCTCAAC+AGG | - | chr7_4:24589339-24589358 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 24588539 | 24589832 | 24588539 | ID=Msa1146670;Name=Msa1146670 |
| chr7_4 | mRNA | 24588539 | 24589832 | 24588539 | ID=Msa1146670-mRNA-1;Parent=Msa1146670;Name=Msa1146670-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|2|0|244 |
| chr7_4 | exon | 24588539 | 24588967 | 24588539 | ID=Msa1146670-mRNA-1:exon:6137;Parent=Msa1146670-mRNA-1 |
| chr7_4 | exon | 24589527 | 24589832 | 24589527 | ID=Msa1146670-mRNA-1:exon:6138;Parent=Msa1146670-mRNA-1 |
| chr7_4 | CDS | 24588539 | 24588967 | 24588539 | ID=Msa1146670-mRNA-1:cds;Parent=Msa1146670-mRNA-1 |
| chr7_4 | CDS | 24589527 | 24589832 | 24589527 | ID=Msa1146670-mRNA-1:cds;Parent=Msa1146670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
