AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1147050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147050 MtrunA17_Chr7g0233911 93.182 176 12 0 1 176 38 213 5.07e-121 340
Msa1147050 MtrunA17_Chr3g0078041 52.695 167 78 1 1 166 54 220 1.51e-59 185
Msa1147050 MtrunA17_Chr2g0329361 39.227 181 93 5 1 166 65 243 2.57e-37 129
Msa1147050 MtrunA17_Chr2g0329421 37.143 175 94 4 2 167 32 199 8.35e-29 105
Msa1147050 MtrunA17_Chr4g0033611 36.095 169 95 4 2 162 81 244 2.94e-28 105
Msa1147050 MtrunA17_Chr5g0448761 51.456 103 47 3 1 100 64 166 5.15e-21 89.4
Msa1147050 MtrunA17_Chr6g0458391 41.584 101 58 1 1 101 229 328 2.88e-18 81.3
Msa1147050 MtrunA17_Chr6g0458391 35.593 118 74 1 1 118 95 210 1.94e-16 76.3
Msa1147050 MtrunA17_Chr2g0329031 34.932 146 87 3 1 145 18 156 9.45e-18 80.1
Msa1147050 MtrunA17_Chr2g0287061 41.414 99 44 1 1 99 33 117 1.76e-16 76.3
Msa1147050 MtrunA17_Chr2g0287061 40.816 98 44 2 2 99 188 271 1.68e-14 70.5
Msa1147050 MtrunA17_Chr1g0203721 30.464 151 91 2 3 153 69 205 7.98e-16 74.3
Msa1147050 MtrunA17_Chr1g0207551 35.185 108 66 2 1 107 38 142 7.73e-15 71.6
Msa1147050 MtrunA17_Chr3g0082121 39.604 101 57 3 1 99 47 145 9.32e-13 65.5
Msa1147050 MtrunA17_Chr5g0440451 35.354 99 50 2 1 99 47 131 1.26e-12 65.1
Msa1147050 MtrunA17_Chr1g0202341 33.000 100 65 2 1 99 55 153 8.53e-12 62.8
Msa1147050 MtrunA17_Chr5g0401121 34.862 109 67 3 1 107 60 166 1.39e-11 59.7
Msa1147050 MtrunA17_Chr3g0080351 31.034 116 58 2 1 99 80 190 3.49e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147050 AT4G12850.1 59.064 171 65 2 1 170 15 181 6.55e-68 205
Msa1147050 AT2G43280.1 50.909 165 80 1 3 166 28 192 2.99e-58 181
Msa1147050 AT2G43280.2 50.641 156 76 1 12 166 2 157 7.01e-55 171
Msa1147050 AT4G12850.2 68.627 102 28 1 1 102 15 112 2.03e-44 144
Msa1147050 AT4G12850.4 68.627 102 28 1 1 102 15 112 3.13e-44 143
Msa1147050 AT3G07500.1 42.614 176 93 2 1 169 37 211 1.29e-40 137
Msa1147050 AT3G59470.3 41.279 172 89 3 2 166 75 241 3.20e-36 126
Msa1147050 AT3G59470.1 41.279 172 89 3 2 166 75 241 3.20e-36 126
Msa1147050 AT3G59470.2 41.279 172 89 3 2 166 87 253 5.59e-36 126
Msa1147050 AT4G38180.1 52.941 102 46 2 1 100 77 178 2.15e-23 96.7
Msa1147050 AT5G18960.2 43.434 99 42 1 1 99 47 131 2.56e-17 79.0
Msa1147050 AT5G18960.2 41.414 99 44 2 1 99 215 299 1.09e-15 74.3
Msa1147050 AT5G18960.1 43.434 99 42 1 1 99 47 131 2.56e-17 79.0
Msa1147050 AT5G18960.1 41.414 99 44 2 1 99 215 299 1.09e-15 74.3
Msa1147050 AT3G06250.2 42.424 99 43 1 1 99 32 116 7.91e-17 77.8
Msa1147050 AT3G06250.2 42.424 99 43 2 1 99 194 278 1.93e-16 76.6
Msa1147050 AT3G06250.1 42.424 99 43 1 1 99 32 116 7.91e-17 77.8
Msa1147050 AT3G06250.1 42.424 99 43 2 1 99 194 278 1.93e-16 76.6
Msa1147050 AT3G06250.3 42.424 99 43 1 1 99 32 116 7.91e-17 77.8
Msa1147050 AT3G06250.3 42.424 99 43 2 1 99 194 278 1.93e-16 76.6
Msa1147050 AT2G32250.5 36.364 99 59 1 1 99 42 136 9.06e-15 71.6
Msa1147050 AT2G32250.6 36.364 99 59 1 1 99 42 136 9.87e-15 71.6
Msa1147050 AT2G32250.1 36.364 99 59 1 1 99 42 136 9.87e-15 71.6
Msa1147050 AT2G32250.3 36.364 99 59 1 1 99 42 136 9.87e-15 71.6
Msa1147050 AT2G32250.2 36.364 99 59 1 1 99 42 136 1.04e-14 71.6
Msa1147050 AT2G32250.4 36.364 99 59 1 1 99 42 136 1.04e-14 71.6
Msa1147050 AT2G32250.7 37.113 97 57 1 1 97 1 93 1.09e-14 71.6
Msa1147050 AT2G32250.8 37.113 97 57 1 1 97 1 93 1.13e-14 71.6
Msa1147050 AT4G15090.1 33.613 119 75 3 1 118 55 170 3.98e-14 69.7
Msa1147050 AT4G15090.5 33.613 119 75 3 1 118 55 170 3.98e-14 69.7
Msa1147050 AT4G15090.3 33.613 119 75 3 1 118 55 170 3.98e-14 69.7
Msa1147050 AT4G15090.2 33.613 119 75 3 1 118 55 170 3.98e-14 69.7
Msa1147050 AT4G15090.4 33.613 119 75 3 1 118 55 170 3.98e-14 69.7
Msa1147050 AT1G76320.3 36.364 99 59 1 1 99 1 95 6.82e-14 69.3
Msa1147050 AT1G76320.2 36.364 99 59 1 1 99 1 95 8.97e-14 68.9
Msa1147050 AT1G76320.1 36.364 99 59 1 1 99 1 95 9.06e-14 68.9
Msa1147050 AT1G76320.4 36.364 99 59 1 1 99 1 95 9.06e-14 68.9
Msa1147050 AT4G19990.7 33.636 110 61 2 2 99 40 149 1.45e-11 62.4
Msa1147050 AT4G19990.5 33.636 110 61 2 2 99 26 135 1.53e-11 62.4
Msa1147050 AT4G19990.3 33.636 110 61 2 2 99 26 135 1.61e-11 62.4
Msa1147050 AT4G19990.4 33.636 110 61 2 2 99 26 135 1.61e-11 62.4
Msa1147050 AT4G19990.6 33.636 110 61 2 2 99 26 135 1.85e-11 62.0
Msa1147050 AT4G19990.2 33.636 110 61 2 2 99 26 135 1.85e-11 62.0

Find 34 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAATGTTCCCTTGCTATT+TGG 0.143180 7_4:+25485065 None:intergenic
CCTCTAACTGCCATAGTTAA+TGG 0.164800 7_4:-25484927 Msa1147050:CDS
CTGCCATAGTTAATGGTTTC+AGG 0.184902 7_4:-25484920 Msa1147050:CDS
AGGTTGCATGGCAACAATTT+TGG 0.264590 7_4:-25485009 Msa1147050:CDS
AACTAATTATTGAAAATATA+AGG 0.316887 7_4:-25481916 Msa1147050:CDS
GAAAATCGCTGAACTTACTA+TGG 0.338806 7_4:-25482041 Msa1147050:CDS
CCTTCTCGTGCACTAGGCCT+TGG 0.392893 7_4:+25485029 None:intergenic
ATATTCAGCATAAAACTTCC+TGG 0.428965 7_4:+25485193 None:intergenic
CCATTAACTATGGCAGTTAG+AGG 0.431747 7_4:+25484927 None:intergenic
AATAATTAGTTGAACTCTTG+TGG 0.435384 7_4:+25481928 None:intergenic
TGTCCTGAAACCATTAACTA+TGG 0.437750 7_4:+25484917 None:intergenic
ACCAAATAGCAAGGGAACAT+TGG 0.440465 7_4:-25485066 Msa1147050:CDS
CCAAATAGCAAGGGAACATT+GGG 0.442775 7_4:-25485065 Msa1147050:CDS
CGCTGAACTTACTATGGAGT+TGG 0.458925 7_4:-25482035 Msa1147050:CDS
TGTAGACGATCTGGAATTGA+TGG 0.483144 7_4:-25485134 Msa1147050:CDS
AGGACTCTTGCTCGTCGACT+TGG 0.484621 7_4:-25485110 Msa1147050:CDS
AAACAATATTGAGGAGGAAA+CGG 0.496048 7_4:-25481960 Msa1147050:CDS
ATGCAACCTTCTCGTGCACT+AGG 0.514269 7_4:+25485023 None:intergenic
TTGATTCTGAAGAAGCTGCC+AGG 0.517746 7_4:-25485211 Msa1147050:CDS
TTATGCTGAATATGCTAGAC+GGG 0.518296 7_4:-25485183 Msa1147050:CDS
GTTATGCAATGTAGACGATC+TGG 0.541831 7_4:-25485143 Msa1147050:CDS
CAGCTTCATAAACAATATTG+AGG 0.558820 7_4:-25481969 Msa1147050:CDS
GACGATCTGGAATTGATGGC+AGG 0.564371 7_4:-25485130 Msa1147050:CDS
GCTGAATATGCTAGACGGGT+AGG 0.564964 7_4:-25485179 Msa1147050:CDS
TAACTATGGCAGTTAGAGGA+TGG 0.578331 7_4:+25484931 None:intergenic
AGGATTCTCACCAAATAGCA+AGG 0.586863 7_4:-25485075 Msa1147050:CDS
CGACTTGGATGTAACAAACA+AGG 0.598498 7_4:-25485095 Msa1147050:CDS
TTTATGCTGAATATGCTAGA+CGG 0.611450 7_4:-25485184 Msa1147050:CDS
CTTCATAAACAATATTGAGG+AGG 0.629613 7_4:-25481966 Msa1147050:CDS
CCAAGGCCTAGTGCACGAGA+AGG 0.635511 7_4:-25485029 Msa1147050:CDS
CAATATTGAGGAGGAAACGG+AGG 0.639576 7_4:-25481957 Msa1147050:CDS
AGTTAATGGTTTCAGGACAG+AGG 0.640431 7_4:-25484913 Msa1147050:intron
TAGTGCACGAGAAGGTTGCA+TGG 0.650503 7_4:-25485021 Msa1147050:CDS
GGATTCTCACCAAATAGCAA+GGG 0.654395 7_4:-25485074 Msa1147050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTAAATTTTCTGT+TGG + chr7_4:25483861-25483880 None:intergenic 10.0%
!!! AAATATATCTTATTTTAAGT+AGG - chr7_4:25483913-25483932 Msa1147050:intron 10.0%
!! AACTAATTATTGAAAATATA+AGG - chr7_4:25485176-25485195 Msa1147050:CDS 10.0%
!! AACAAAATGAAATAACATAT+GGG - chr7_4:25483336-25483355 Msa1147050:intron 15.0%
!! TAAAAATTGAAAAGTGAAAA+TGG + chr7_4:25483394-25483413 None:intergenic 15.0%
!!! ATTGATTTTATATTAAGGAT+CGG + chr7_4:25483433-25483452 None:intergenic 15.0%
!! TTGAAAAATATATTTAGTTG+AGG + chr7_4:25483509-25483528 None:intergenic 15.0%
!!! AGTTGTATATTGTTTTAATT+AGG - chr7_4:25483940-25483959 Msa1147050:intron 15.0%
!! TATGTATTTGTGTTATAAAT+AGG - chr7_4:25483987-25484006 Msa1147050:intron 15.0%
!! ATGTTCTATTACATTAAATT+AGG - chr7_4:25484834-25484853 Msa1147050:intron 15.0%
!!! ATTTTGATTTTGCATAACTA+AGG - chr7_4:25482509-25482528 Msa1147050:intron 20.0%
!! GTCTTAGAAACTAATAAAAA+AGG - chr7_4:25482591-25482610 Msa1147050:intron 20.0%
!!! TGAGAATTTTAATACTTAGT+TGG - chr7_4:25482831-25482850 Msa1147050:intron 20.0%
!!! GAGAATTTTAATACTTAGTT+GGG - chr7_4:25482832-25482851 Msa1147050:intron 20.0%
!! TAGTTGAAAAAAAGGAAAAA+GGG - chr7_4:25483053-25483072 Msa1147050:intron 20.0%
!! GAAATGAAAGAAAATAATAG+TGG - chr7_4:25483137-25483156 Msa1147050:intron 20.0%
!!! CTTTTTTGTTTTTTGTTAGT+TGG + chr7_4:25483297-25483316 None:intergenic 20.0%
!! GAACAAAATGAAATAACATA+TGG - chr7_4:25483335-25483354 Msa1147050:intron 20.0%
!!! ATTTTTAAATTTTCTGTTGG+AGG + chr7_4:25483858-25483877 None:intergenic 20.0%
!!! TATATCTTATTTTAAGTAGG+AGG - chr7_4:25483916-25483935 Msa1147050:intron 20.0%
!!! ATATCTTATTTTAAGTAGGA+GGG - chr7_4:25483917-25483936 Msa1147050:intron 20.0%
!! CTTTATTGTTCTTTGATTAT+TGG - chr7_4:25484653-25484672 Msa1147050:intron 20.0%
!! ATTACATTAAATTAGGTGTT+TGG - chr7_4:25484841-25484860 Msa1147050:intron 20.0%
!! AAAAGTAAATTGAAACAGTA+AGG + chr7_4:25485003-25485022 None:intergenic 20.0%
! ATAACTTTAATTGCTGGATA+TGG - chr7_4:25482412-25482431 Msa1147050:intron 25.0%
! CTAGTTGAAAAAAAGGAAAA+AGG - chr7_4:25483052-25483071 Msa1147050:intron 25.0%
! AGTTGAAAAAAAGGAAAAAG+GGG - chr7_4:25483054-25483073 Msa1147050:intron 25.0%
! TAACAAAAAACAAAAAAGCG+AGG - chr7_4:25483299-25483318 Msa1147050:intron 25.0%
!!! TGTTTTAATTAGGACAGTTA+TGG - chr7_4:25483950-25483969 Msa1147050:intron 25.0%
! TCAGTTATTTGGTAAAGTAT+TGG - chr7_4:25484038-25484057 Msa1147050:intron 25.0%
!! CAGTTATTTGGTAAAGTATT+GGG - chr7_4:25484039-25484058 Msa1147050:intron 25.0%
! TACAAAACATTGTGAAATAG+CGG + chr7_4:25484482-25484501 None:intergenic 25.0%
! GTACCAGACATATATAATAT+GGG + chr7_4:25484568-25484587 None:intergenic 25.0%
! AGTACCAGACATATATAATA+TGG + chr7_4:25484569-25484588 None:intergenic 25.0%
! ACTGTTATTGGAGTTATATT+TGG - chr7_4:25484791-25484810 Msa1147050:intron 25.0%
! CTGTTATTGGAGTTATATTT+GGG - chr7_4:25484792-25484811 Msa1147050:intron 25.0%
! TATATTTGGGAACTGATAAA+TGG - chr7_4:25484805-25484824 Msa1147050:intron 25.0%
!! TAGAATTGATTCTTATGTTG+AGG - chr7_4:25484917-25484936 Msa1147050:CDS 25.0%
! ATCAACATATCAAGTAGATT+TGG + chr7_4:25484980-25484999 None:intergenic 25.0%
! AATAATTAGTTGAACTCTTG+TGG + chr7_4:25485167-25485186 None:intergenic 25.0%
ATATTCAGCATAAAACTTCC+TGG + chr7_4:25481902-25481921 None:intergenic 30.0%
TTTATGCTGAATATGCTAGA+CGG - chr7_4:25481908-25481927 Msa1147050:CDS 30.0%
TTGGTTAAGATGGAAAAATC+TGG - chr7_4:25482102-25482121 Msa1147050:intron 30.0%
AGATGGAAAAATCTGGAAAA+TGG - chr7_4:25482109-25482128 Msa1147050:intron 30.0%
GATGGAAAAATCTGGAAAAT+GGG - chr7_4:25482110-25482129 Msa1147050:intron 30.0%
ATGAAAATAAGGAAACAGAC+AGG + chr7_4:25482330-25482349 None:intergenic 30.0%
AAGGCAGATACATGAAAATA+AGG + chr7_4:25482341-25482360 None:intergenic 30.0%
CAATCACAAACTCACTTATA+AGG + chr7_4:25482360-25482379 None:intergenic 30.0%
CTGGATATGGTAATTTCAAT+AGG - chr7_4:25482425-25482444 Msa1147050:intron 30.0%
TCAACTACTTCTGATGTATA+TGG + chr7_4:25482680-25482699 None:intergenic 30.0%
! ATGAACAACTCGGAAAATTT+TGG - chr7_4:25482743-25482762 Msa1147050:intron 30.0%
! TGAACAACTCGGAAAATTTT+GGG - chr7_4:25482744-25482763 Msa1147050:intron 30.0%
!! GAAAATTTTGGGTAAGTAGA+GGG - chr7_4:25482755-25482774 Msa1147050:intron 30.0%
TATGTTATCAAAAGCGACTA+TGG - chr7_4:25482893-25482912 Msa1147050:intron 30.0%
!!! CCTTTTTTTCAACTAGAAAG+CGG + chr7_4:25483048-25483067 None:intergenic 30.0%
AAAAAAGGAAAAAGGGGAAT+AGG - chr7_4:25483060-25483079 Msa1147050:intron 30.0%
! AGAAAATAATAGTGGAGAGA+AGG - chr7_4:25483145-25483164 Msa1147050:intron 30.0%
TTATCCTGTGTTATCAATCT+CGG + chr7_4:25483598-25483617 None:intergenic 30.0%
TATTGTGAAGAATCATGTGA+AGG + chr7_4:25483767-25483786 None:intergenic 30.0%
AATAGGAAAGTTATGAGACA+AGG - chr7_4:25484004-25484023 Msa1147050:intron 30.0%
ATAGGAAAGTTATGAGACAA+GGG - chr7_4:25484005-25484024 Msa1147050:intron 30.0%
! CCATTTTAGACTGTTTAACA+AGG + chr7_4:25484201-25484220 None:intergenic 30.0%
CCTTGTTAAACAGTCTAAAA+TGG - chr7_4:25484198-25484217 Msa1147050:intron 30.0%
CAAGGTATGGAATGTAATAA+AGG + chr7_4:25484228-25484247 None:intergenic 30.0%
!!! CTGAACTTTTTTACAAGGTA+TGG + chr7_4:25484241-25484260 None:intergenic 30.0%
!!! TGATGCTGAACTTTTTTACA+AGG + chr7_4:25484246-25484265 None:intergenic 30.0%
AGACTAATTCACTGATAAAC+TGG - chr7_4:25484284-25484303 Msa1147050:intron 30.0%
TCAGAGCTTAAACTACAATA+GGG + chr7_4:25484356-25484375 None:intergenic 30.0%
ATCAGAGCTTAAACTACAAT+AGG + chr7_4:25484357-25484376 None:intergenic 30.0%
TGATATCAATCATCTTCCTT+TGG - chr7_4:25484373-25484392 Msa1147050:intron 30.0%
TTGTATTTAATAGCGTATCG+AGG - chr7_4:25484497-25484516 Msa1147050:intron 30.0%
TTCAAATTCCGTTATGCAAT+AGG - chr7_4:25484535-25484554 Msa1147050:intron 30.0%
TCAAATTCCGTTATGCAATA+GGG - chr7_4:25484536-25484555 Msa1147050:intron 30.0%
TAGCCCATATTATATATGTC+TGG - chr7_4:25484562-25484581 Msa1147050:intron 30.0%
ATATATGTCTGGTACTTATC+TGG - chr7_4:25484573-25484592 Msa1147050:intron 30.0%
AATTGATACAGATATCTGCA+TGG - chr7_4:25484614-25484633 Msa1147050:intron 30.0%
TTAGTGTTCACTACTGTTAT+TGG - chr7_4:25484779-25484798 Msa1147050:intron 30.0%
ATTAGGTGTTTGGTACATAA+AGG - chr7_4:25484851-25484870 Msa1147050:intron 30.0%
TTTATCATCCTACAAGTAGA+GGG + chr7_4:25485026-25485045 None:intergenic 30.0%
CAGCTTCATAAACAATATTG+AGG - chr7_4:25485123-25485142 Msa1147050:CDS 30.0%
CTTCATAAACAATATTGAGG+AGG - chr7_4:25485126-25485145 Msa1147050:CDS 30.0%
AAACAATATTGAGGAGGAAA+CGG - chr7_4:25485132-25485151 Msa1147050:CDS 30.0%
TTATGCTGAATATGCTAGAC+GGG - chr7_4:25481909-25481928 Msa1147050:CDS 35.0%
TGGGAAAAGAAAAAAGACCA+AGG - chr7_4:25482046-25482065 Msa1147050:CDS 35.0%
!!! GGCAACAATTTTGGTTAAGA+TGG - chr7_4:25482092-25482111 Msa1147050:intron 35.0%
TGTCCTGAAACCATTAACTA+TGG + chr7_4:25482178-25482197 None:intergenic 35.0%
CGAAGATCTACTTAAACAAG+TGG + chr7_4:25482249-25482268 None:intergenic 35.0%
!! GTAGATCTTCGTTGTTTCTT+AGG - chr7_4:25482258-25482277 Msa1147050:intron 35.0%
TTGTATGCATACAAGAACTG+TGG - chr7_4:25482377-25482396 Msa1147050:intron 35.0%
CTGCTGATAACTTTAATTGC+TGG - chr7_4:25482406-25482425 Msa1147050:intron 35.0%
AATGTATCATGTCATGTCTC+AGG + chr7_4:25482474-25482493 None:intergenic 35.0%
! CTTTCACTATGTCTTTTGTG+TGG - chr7_4:25482714-25482733 Msa1147050:intron 35.0%
GTGGTAATCAATGAACAACT+CGG - chr7_4:25482733-25482752 Msa1147050:intron 35.0%
!! GGAAAATTTTGGGTAAGTAG+AGG - chr7_4:25482754-25482773 Msa1147050:intron 35.0%
AGGGAATAAAAGGATGAAGA+GGG - chr7_4:25482774-25482793 Msa1147050:intron 35.0%
AGAAACAGGTTTGATGAAGA+GGG - chr7_4:25482804-25482823 Msa1147050:intron 35.0%
GACATTTAGATGTTGTGCAT+TGG - chr7_4:25482862-25482881 Msa1147050:intron 35.0%
!! CCGCTTTCTAGTTGAAAAAA+AGG - chr7_4:25483045-25483064 Msa1147050:intron 35.0%
!! AGCCTTGTCTCTTTTTGTTT+TGG - chr7_4:25483250-25483269 Msa1147050:intron 35.0%
GGACTACAGTTAACTTATGT+TGG + chr7_4:25483276-25483295 None:intergenic 35.0%
AAGACCCAGTATTAACTTAG+AGG + chr7_4:25483362-25483381 None:intergenic 35.0%
CGACACATTCTACAAATCAT+GGG + chr7_4:25483629-25483648 None:intergenic 35.0%
ACGACACATTCTACAAATCA+TGG + chr7_4:25483630-25483649 None:intergenic 35.0%
! ATGATTTGTAGAATGTGTCG+TGG - chr7_4:25483629-25483648 Msa1147050:intron 35.0%
CTAAAGCTCGTATTCTTCTA+TGG - chr7_4:25483678-25483697 Msa1147050:intron 35.0%
TGAAGAATCATGTGAAGGAA+TGG + chr7_4:25483762-25483781 None:intergenic 35.0%
TCACATTACATGCAGAAAAG+AGG + chr7_4:25483795-25483814 None:intergenic 35.0%
GTTCATTTGCAGCAAAATCA+CGG - chr7_4:25483817-25483836 Msa1147050:intron 35.0%
TTCATTTGCAGCAAAATCAC+GGG - chr7_4:25483818-25483837 Msa1147050:intron 35.0%
TAGGAAAGTTATGAGACAAG+GGG - chr7_4:25484006-25484025 Msa1147050:intron 35.0%
TTCCCAAATGTTCAAGTGTT+GGG + chr7_4:25484070-25484089 None:intergenic 35.0%
AACACTTGAACATTTGGGAA+GGG - chr7_4:25484070-25484089 Msa1147050:intron 35.0%
CAAGGATCATAGGCTAAAAT+TGG + chr7_4:25484183-25484202 None:intergenic 35.0%
GACTGTTTAACAAGGATCAT+AGG + chr7_4:25484193-25484212 None:intergenic 35.0%
ATAAACTGGAAATTGCAGTG+TGG - chr7_4:25484298-25484317 Msa1147050:intron 35.0%
AGGGTTCTGTGATGTTTAAA+TGG + chr7_4:25484337-25484356 None:intergenic 35.0%
!!! TCATCTTCCTTTGGTTTTTC+TGG - chr7_4:25484382-25484401 Msa1147050:intron 35.0%
ACTACTACCAGAAAAACCAA+AGG + chr7_4:25484392-25484411 None:intergenic 35.0%
GTGCATGTATAGTTCAAGAA+CGG - chr7_4:25484729-25484748 Msa1147050:intron 35.0%
AGCATATGAACTCAACTTCT+TGG - chr7_4:25484888-25484907 Msa1147050:intron 35.0%
!! TTACTTTTCCCTCTACTTGT+AGG - chr7_4:25485015-25485034 Msa1147050:CDS 35.0%
CTTTATCATCCTACAAGTAG+AGG + chr7_4:25485027-25485046 None:intergenic 35.0%
GAAAATCGCTGAACTTACTA+TGG - chr7_4:25485051-25485070 Msa1147050:CDS 35.0%
GTTATGCAATGTAGACGATC+TGG - chr7_4:25481949-25481968 Msa1147050:CDS 40.0%
! TGTAGACGATCTGGAATTGA+TGG - chr7_4:25481958-25481977 Msa1147050:CDS 40.0%
! CGACTTGGATGTAACAAACA+AGG - chr7_4:25481997-25482016 Msa1147050:CDS 40.0%
AGGATTCTCACCAAATAGCA+AGG - chr7_4:25482017-25482036 Msa1147050:CDS 40.0%
GGATTCTCACCAAATAGCAA+GGG - chr7_4:25482018-25482037 Msa1147050:CDS 40.0%
ACCAAATAGCAAGGGAACAT+TGG - chr7_4:25482026-25482045 Msa1147050:CDS 40.0%
CCAAATAGCAAGGGAACATT+GGG - chr7_4:25482027-25482046 Msa1147050:CDS 40.0%
! AGGTTGCATGGCAACAATTT+TGG - chr7_4:25482083-25482102 Msa1147050:intron 40.0%
TAACTATGGCAGTTAGAGGA+TGG + chr7_4:25482164-25482183 None:intergenic 40.0%
CCATTAACTATGGCAGTTAG+AGG + chr7_4:25482168-25482187 None:intergenic 40.0%
CCTCTAACTGCCATAGTTAA+TGG - chr7_4:25482165-25482184 Msa1147050:intron 40.0%
CTGCCATAGTTAATGGTTTC+AGG - chr7_4:25482172-25482191 Msa1147050:intron 40.0%
AGTTAATGGTTTCAGGACAG+AGG - chr7_4:25482179-25482198 Msa1147050:intron 40.0%
!! TTTGATTTGATGCGCGCTAA+GGG - chr7_4:25482634-25482653 Msa1147050:intron 40.0%
GGGTAAGTAGAGGGAATAAA+AGG - chr7_4:25482764-25482783 Msa1147050:intron 40.0%
GAGGGAATAAAAGGATGAAG+AGG - chr7_4:25482773-25482792 Msa1147050:intron 40.0%
GAGAAACAGGTTTGATGAAG+AGG - chr7_4:25482803-25482822 Msa1147050:intron 40.0%
AGAGAAGGATGATCGAAGAA+GGG - chr7_4:25483160-25483179 Msa1147050:intron 40.0%
!!! GCACTGTGTTTTGGTCATTA+GGG - chr7_4:25483206-25483225 Msa1147050:intron 40.0%
CAAAAAGAGACAAGGCTACA+AGG + chr7_4:25483247-25483266 None:intergenic 40.0%
GGCCAAAACAAAAAGAGACA+AGG + chr7_4:25483255-25483274 None:intergenic 40.0%
ATGGGCCTCTAAGTTAATAC+TGG - chr7_4:25483354-25483373 Msa1147050:intron 40.0%
TGGGCCTCTAAGTTAATACT+GGG - chr7_4:25483355-25483374 Msa1147050:intron 40.0%
GTGTTATCAATCTCGGATAG+CGG + chr7_4:25483591-25483610 None:intergenic 40.0%
! CTATCCGAGATTGATAACAC+AGG - chr7_4:25483591-25483610 Msa1147050:intron 40.0%
TTGTAGAATGTGTCGTGGAT+AGG - chr7_4:25483634-25483653 Msa1147050:intron 40.0%
GTATTCTTCTATGGCAACAC+AGG - chr7_4:25483687-25483706 Msa1147050:intron 40.0%
AGAAGGACACATCTCTTAGA+CGG + chr7_4:25483733-25483752 None:intergenic 40.0%
TGAAGGAATGGAAGCAAAGA+AGG + chr7_4:25483750-25483769 None:intergenic 40.0%
TCATTTGCAGCAAAATCACG+GGG - chr7_4:25483819-25483838 Msa1147050:intron 40.0%
AGGACAGTTATGGTTATGTG+TGG - chr7_4:25483960-25483979 Msa1147050:intron 40.0%
AAAGTTATGAGACAAGGGGA+AGG - chr7_4:25484010-25484029 Msa1147050:intron 40.0%
AAGTTATGAGACAAGGGGAA+GGG - chr7_4:25484011-25484030 Msa1147050:intron 40.0%
AGACCCAACACTTGAACATT+TGG - chr7_4:25484064-25484083 Msa1147050:intron 40.0%
GACCCAACACTTGAACATTT+GGG - chr7_4:25484065-25484084 Msa1147050:intron 40.0%
CTTCCCAAATGTTCAAGTGT+TGG + chr7_4:25484071-25484090 None:intergenic 40.0%
CAACACTTGAACATTTGGGA+AGG - chr7_4:25484069-25484088 Msa1147050:intron 40.0%
TCCAAGACTCTCGAATATCT+TGG - chr7_4:25484098-25484117 Msa1147050:intron 40.0%
CCAAGACTCTCGAATATCTT+GGG - chr7_4:25484099-25484118 Msa1147050:intron 40.0%
TTGCAGACTGCAGAAAATAG+CGG - chr7_4:25484420-25484439 Msa1147050:intron 40.0%
GCTATAGCCCTATTGCATAA+CGG + chr7_4:25484546-25484565 None:intergenic 40.0%
TGGTACTTATCTGGAAGACA+GGG - chr7_4:25484582-25484601 Msa1147050:intron 40.0%
! TTGATTCTGAAGAAGCTGCC+AGG - chr7_4:25481881-25481900 Msa1147050:CDS 45.0%
!! CCCAATGTTCCCTTGCTATT+TGG + chr7_4:25482030-25482049 None:intergenic 45.0%
TCATGTCATGTCTCAGGCTA+GGG + chr7_4:25482468-25482487 None:intergenic 45.0%
ATCATGTCATGTCTCAGGCT+AGG + chr7_4:25482469-25482488 None:intergenic 45.0%
CATAACTAAGGCCTCACTCA+CGG - chr7_4:25482521-25482540 Msa1147050:intron 45.0%
ATGCAAAAGATCCGTGAGTG+AGG + chr7_4:25482535-25482554 None:intergenic 45.0%
!! CTTTGATTTGATGCGCGCTA+AGG - chr7_4:25482633-25482652 Msa1147050:intron 45.0%
AAGAGGGTTGAGAGAGAAAC+AGG - chr7_4:25482790-25482809 Msa1147050:intron 45.0%
AGCAGCACAGAAGGATAATG+TGG - chr7_4:25482968-25482987 Msa1147050:intron 45.0%
AGCACAGAAGGATAATGTGG+TGG - chr7_4:25482971-25482990 Msa1147050:intron 45.0%
GCACAGAAGGATAATGTGGT+GGG - chr7_4:25482972-25482991 Msa1147050:intron 45.0%
CACAGAAGGATAATGTGGTG+GGG - chr7_4:25482973-25482992 Msa1147050:intron 45.0%
ACAGAAGGATAATGTGGTGG+GGG - chr7_4:25482974-25482993 Msa1147050:intron 45.0%
!!! AGTAGCCAGAGCCTTGTTTT+GGG + chr7_4:25483021-25483040 None:intergenic 45.0%
!!! AAGTAGCCAGAGCCTTGTTT+TGG + chr7_4:25483022-25483041 None:intergenic 45.0%
AGAGAGTAGCGACAGAAGAA+AGG - chr7_4:25483100-25483119 Msa1147050:intron 45.0%
GAGAGAAGGATGATCGAAGA+AGG - chr7_4:25483159-25483178 Msa1147050:intron 45.0%
AAGATGACACACTGTTGCAG+TGG - chr7_4:25483184-25483203 Msa1147050:intron 45.0%
!!! GGCACTGTGTTTTGGTCATT+AGG - chr7_4:25483205-25483224 Msa1147050:intron 45.0%
GTCATTAGGGTTACTGCTGA+AGG - chr7_4:25483219-25483238 Msa1147050:intron 45.0%
TTCTATGGCAACACAGGTCA+CGG - chr7_4:25483693-25483712 Msa1147050:intron 45.0%
AGTTATGAGACAAGGGGAAG+GGG - chr7_4:25484012-25484031 Msa1147050:intron 45.0%
ACTTGAACATTTGGGAAGGG+AGG - chr7_4:25484073-25484092 Msa1147050:intron 45.0%
CTTGAACATTTGGGAAGGGA+GGG - chr7_4:25484074-25484093 Msa1147050:intron 45.0%
CCCAAGATATTCGAGAGTCT+TGG + chr7_4:25484102-25484121 None:intergenic 45.0%
AGCGTATCGAGGAACGATAT+TGG - chr7_4:25484508-25484527 Msa1147050:intron 45.0%
CTGGTACTTATCTGGAAGAC+AGG - chr7_4:25484581-25484600 Msa1147050:intron 45.0%
CGCTGAACTTACTATGGAGT+TGG - chr7_4:25485057-25485076 Msa1147050:CDS 45.0%
CAATATTGAGGAGGAAACGG+AGG - chr7_4:25485135-25485154 Msa1147050:CDS 45.0%
!!! AATTAATTGATTTTATATTA+AGG + chr7_4:25483438-25483457 None:intergenic 5.0%
!!! ATTAATATTAATTTGTATTT+TGG - chr7_4:25484135-25484154 Msa1147050:intron 5.0%
GCTGAATATGCTAGACGGGT+AGG - chr7_4:25481913-25481932 Msa1147050:CDS 50.0%
! GACGATCTGGAATTGATGGC+AGG - chr7_4:25481962-25481981 Msa1147050:CDS 50.0%
ATGCAACCTTCTCGTGCACT+AGG + chr7_4:25482072-25482091 None:intergenic 50.0%
TAGTGCACGAGAAGGTTGCA+TGG - chr7_4:25482071-25482090 Msa1147050:intron 50.0%
! ATTTTGCCACTCCGCGATAG+AGG + chr7_4:25482922-25482941 None:intergenic 50.0%
ATCGCGGAGTGGCAAAATTG+AGG - chr7_4:25482924-25482943 Msa1147050:intron 50.0%
AAACCCCCAAAACAAGGCTC+TGG - chr7_4:25483013-25483032 Msa1147050:intron 50.0%
!!! TAGCCAGAGCCTTGTTTTGG+GGG + chr7_4:25483019-25483038 None:intergenic 50.0%
!!! GTAGCCAGAGCCTTGTTTTG+GGG + chr7_4:25483020-25483039 None:intergenic 50.0%
! GTTGCAGTGGCACTGTGTTT+TGG - chr7_4:25483197-25483216 Msa1147050:intron 50.0%
AGAGCGGTGCAGACGTTATT+TGG + chr7_4:25483549-25483568 None:intergenic 50.0%
!!! GTCTGCACCGCTCTAGTTTT+GGG - chr7_4:25483555-25483574 Msa1147050:intron 50.0%
!!! TCTGCACCGCTCTAGTTTTG+GGG - chr7_4:25483556-25483575 Msa1147050:intron 50.0%
AGCCAACCCCAAAACTAGAG+CGG + chr7_4:25483565-25483584 None:intergenic 50.0%
GGATAGGCTGTGACAAGCTT+TGG - chr7_4:25483650-25483669 Msa1147050:intron 50.0%
GTTATGAGACAAGGGGAAGG+GGG - chr7_4:25484013-25484032 Msa1147050:intron 50.0%
TTATGAGACAAGGGGAAGGG+GGG - chr7_4:25484014-25484033 Msa1147050:intron 50.0%
GGAAGGGGGGATCAGTTATT+TGG - chr7_4:25484027-25484046 Msa1147050:intron 50.0%
! AGGACTCTTGCTCGTCGACT+TGG - chr7_4:25481982-25482001 Msa1147050:CDS 55.0%
GACTATGGCAGCCTCTATCG+CGG - chr7_4:25482908-25482927 Msa1147050:intron 55.0%
! TAATGTGGTGGGGGCCAGTT+TGG - chr7_4:25482983-25483002 Msa1147050:intron 55.0%
GCGGTGAAACCCCCAAAACA+AGG - chr7_4:25483007-25483026 Msa1147050:intron 55.0%
GCGGTGCAGACGTTATTTGG+TGG + chr7_4:25483546-25483565 None:intergenic 55.0%
!! CGTCTGCACCGCTCTAGTTT+TGG - chr7_4:25483554-25483573 Msa1147050:intron 55.0%
!!! CACCGCTCTAGTTTTGGGGT+TGG - chr7_4:25483560-25483579 Msa1147050:intron 55.0%
CCTTCTCGTGCACTAGGCCT+TGG + chr7_4:25482066-25482085 None:intergenic 60.0%
CCAAGGCCTAGTGCACGAGA+AGG - chr7_4:25482063-25482082 Msa1147050:intron 60.0%
!! CTGTGCTGCTTAGCGCAGCT+GGG + chr7_4:25482958-25482977 None:intergenic 60.0%
!! TCTGTGCTGCTTAGCGCAGC+TGG + chr7_4:25482959-25482978 None:intergenic 60.0%
GCTGCGCTAAGCAGCACAGA+AGG - chr7_4:25482959-25482978 Msa1147050:intron 60.0%
GGGGTTTCACCGCTCCAAAC+TGG + chr7_4:25483000-25483019 None:intergenic 60.0%
GGCGCTATAGCACTGTTGCG+TGG + chr7_4:25484461-25484480 None:intergenic 60.0%
TGGCAGCCTCTATCGCGGAG+TGG - chr7_4:25482913-25482932 Msa1147050:intron 65.0%
TGGTGGGGGCCAGTTTGGAG+CGG - chr7_4:25482988-25483007 Msa1147050:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 25481874 25485240 25481874 ID=Msa1147050;Name=Msa1147050
chr7_4 mRNA 25481874 25485240 25481874 ID=Msa1147050-mRNA-1;Parent=Msa1147050;Name=Msa1147050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|176
chr7_4 exon 25484914 25485240 25484914 ID=Msa1147050-mRNA-1:exon:6315;Parent=Msa1147050-mRNA-1
chr7_4 exon 25481874 25482077 25481874 ID=Msa1147050-mRNA-1:exon:6314;Parent=Msa1147050-mRNA-1
chr7_4 CDS 25484914 25485240 25484914 ID=Msa1147050-mRNA-1:cds;Parent=Msa1147050-mRNA-1
chr7_4 CDS 25481874 25482077 25481874 ID=Msa1147050-mRNA-1:cds;Parent=Msa1147050-mRNA-1
Gene Sequence

>Msa1147050

ATGGAGTTTGATTCTGAAGAAGCTGCCAGGAAGTTTTATGCTGAATATGCTAGACGGGTAGGATTTGTTGTACGCGTTATGCAATGTAGACGATCTGGAATTGATGGCAGGACTCTTGCTCGTCGACTTGGATGTAACAAACAAGGATTCTCACCAAATAGCAAGGGAACATTGGGAAAAGAAAAAAGACCAAGGCCTAGTGCACGAGAAGGTTGCATGGCAACAATTTTGGTTAAGATGGAAAAATCTGGAAAATGGGTTGTCACAAGATTTATAAAAGATCACAACCATCCTCTAACTGCCATAGTTAATGGTTTCAGGACAGAGGATGATAAAGATAAGAAAATCGCTGAACTTACTATGGAGTTGGAGCGACAAGATGAACTATGTGCTGCGTATAGAGAAAAACTACTCAGCTTCATAAACAATATTGAGGAGGAAACGGAGGAAATGTCCACAAGAGTTCAACTAATTATTGAAAATATAAGGAGAGCTGAGTGTCATGCAAAAAAGCTCACAGAAAGTGTATAA

Protein sequence

>Msa1147050

MEFDSEEAARKFYAEYARRVGFVVRVMQCRRSGIDGRTLARRLGCNKQGFSPNSKGTLGKEKRPRPSAREGCMATILVKMEKSGKWVVTRFIKDHNHPLTAIVNGFRTEDDKDKKIAELTMELERQDELCAAYREKLLSFINNIEEETEEMSTRVQLIIENIRRAECHAKKLTESV*