AlfalfaGEDB | Msa1147840

M. sativa cultivar zhongmu-4 / Msa1147840

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1147840	AES79096.1	66.355	107	9	2	1	107	1	80	1.05e-37	132

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1147840	sp\|Q9FJK3\|AGL80_ARATH	52.830	106	49	1	1	105	1	106	9.42e-27	103

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1147840	G7L067	66.355	107	9	2	1	107	1	80	5.01e-38	132

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TFs/TRs:

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Gene ID	Type	Classification
Msa1147840	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1147840	MtrunA17_Chr4g0014321	59.259	108	43	1	1	107	1	108	1.40e-36	124
Msa1147840	MtrunA17_Chr8g0351751	61.386	101	36	1	1	98	1	101	4.62e-36	122
Msa1147840	MtrunA17_Chr4g0014031	62.037	108	40	1	1	107	1	108	1.42e-35	121
Msa1147840	MtrunA17_Chr2g0296831	63.889	108	38	1	1	107	1	108	2.51e-35	117
Msa1147840	MtrunA17_Chr3g0107381	52.778	108	50	1	1	107	1	108	2.59e-34	117
Msa1147840	MtrunA17_Chr3g0110131	54.630	108	48	1	1	107	1	108	5.18e-32	112
Msa1147840	MtrunA17_Chr4g0013041	51.852	108	49	2	1	107	1	106	6.29e-30	106
Msa1147840	MtrunA17_Chr4g0014121	58.333	108	44	1	1	107	29	136	2.94e-29	103
Msa1147840	MtrunA17_Chr4g0014131	58.333	108	44	1	1	107	1	108	4.52e-29	104
Msa1147840	MtrunA17_Chr3g0107331	45.283	106	57	1	3	107	2	107	2.99e-28	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1147840	AT5G48670.1	52.830	106	49	1	1	105	1	106	9.58e-28	103
Msa1147840	AT3G05860.2	43.617	94	52	1	1	93	1	94	2.59e-23	89.4
Msa1147840	AT3G05860.3	43.617	94	52	1	1	93	1	94	1.04e-22	89.0
Msa1147840	AT3G05860.1	43.617	94	52	1	1	93	1	94	1.41e-22	88.6
Msa1147840	AT5G27810.1	46.250	80	42	1	29	107	1	80	2.25e-21	82.0
Msa1147840	AT1G65300.1	42.453	106	60	1	3	107	2	107	5.68e-21	84.7
Msa1147840	AT1G65330.1	40.566	106	62	1	3	107	2	107	8.52e-20	81.6
Msa1147840	AT5G27960.1	41.414	99	57	1	4	101	2	100	1.68e-18	79.0
Msa1147840	AT5G26650.1	41.414	99	57	1	4	101	2	100	5.43e-18	77.8
Msa1147840	AT5G26630.1	42.593	108	61	1	1	107	1	108	1.91e-17	74.3

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Find 20 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAACAAGTTAAGAAGCCA+AGG	0.574148	7_4:+27359012	Msa1147840:CDS
AATCCAGACTATACATGAGT+TGG	0.520722	7_4:+27358929	Msa1147840:CDS
ACAAGCTTCAATTCCACAAA+GGG	0.520783	7_4:-27358832	None:intergenic
ACTAGCATCATTTACATTAG+AGG	0.304340	7_4:-27358748	None:intergenic
ATAGCACTTTGAACTTCCTT+TGG	0.406725	7_4:-27358903	None:intergenic
ATCTCAAGTTGTGGTTCATA+AGG	0.360688	7_4:-27358870	None:intergenic
ATGAACCACAACTTGAGATT+TGG	0.331935	7_4:+27358874	Msa1147840:CDS
CACAAGCTTCAATTCCACAA+AGG	0.628500	7_4:-27358833	None:intergenic
CATGAAACATAGTGTTATGA+TGG	0.436074	7_4:+27358986	Msa1147840:CDS
CTTTGAACTTCCTTTGGCGA+TGG	0.511371	7_4:-27358897	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTAGCATCATTTACATTAG+AGG	-	chr7_4:27358751-27358770	None:intergenic	30.0%
GTTGGATAGTTACAAGAAAA+TGG	+	chr7_4:27358947-27358966	Msa1147840:CDS	30.0%
TATGTTTCATGAAAGTCTCT+TGG	-	chr7_4:27358977-27358996	None:intergenic	30.0%
CATGAAACATAGTGTTATGA+TGG	+	chr7_4:27358986-27359005	Msa1147840:CDS	30.0%
ACAAGCTTCAATTCCACAAA+GGG	-	chr7_4:27358835-27358854	None:intergenic	35.0%
ATGAACCACAACTTGAGATT+TGG	+	chr7_4:27358874-27358893	Msa1147840:CDS	35.0%
ATAGCACTTTGAACTTCCTT+TGG	-	chr7_4:27358906-27358925	None:intergenic	35.0%
AATCCAGACTATACATGAGT+TGG	+	chr7_4:27358929-27358948	Msa1147840:CDS	35.0%
TATCCAACTCATGTATAGTC+TGG	-	chr7_4:27358935-27358954	None:intergenic	35.0%
AAGAACAAGTTAAGAAGCCA+AGG	+	chr7_4:27359012-27359031	Msa1147840:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	27358723	27359049	27358723	ID=Msa1147840;Name=Msa1147840
chr7_4	mRNA	27358723	27359049	27358723	ID=Msa1147840-mRNA-1;Parent=Msa1147840;Name=Msa1147840-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|108
chr7_4	exon	27358723	27359049	27358723	ID=Msa1147840-mRNA-1:exon:6708;Parent=Msa1147840-mRNA-1
chr7_4	CDS	27358723	27359049	27358723	ID=Msa1147840-mRNA-1:cds;Parent=Msa1147840-mRNA-1

Gene Sequence	>Msa1147840 ATGACTAGAAAAAAGGTGAAACTTTCCTCTAATGTAAATGATGCTAGTGTAAAAGCAACATACAAGAAAAGGAAGAATTGTGTATTGAATAAAGTTGATGAAATAAGCACCCTTTGTGGAATTGAAGCTTGTGCTATAGTGTATGGCCCTTATGAACCACAACTTGAGATTTGGCCATCGCCAAAGGAAGTTCAAAGTGCTATCGAAATCCAGACTATACATGAGTTGGATAGTTACAAGAAAATGGTGAACCAAGAGACTTTCATGAAACATAGTGTTATGATGGCTAAAGAACAAGTTAAGAAGCCAAGGAAATACAATATGTAG
Protein sequence	>Msa1147840 MTRKKVKLSSNVNDASVKATYKKRKNCVLNKVDEISTLCGIEACAIVYGPYEPQLEIWPSPKEVQSAIEIQTIHELDSYKKMVNQETFMKHSVMMAKEQVKKPRKYNM*