Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148490 | XP_003617186.1 | 93.478 | 46 | 3 | 0 | 34 | 79 | 130 | 175 | 6.24e-17 | 87.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148490 | sp|O04193|WLI2A_ARATH | 77.143 | 35 | 8 | 0 | 3 | 37 | 12 | 46 | 1.07e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148490 | G7KCS4 | 93.478 | 46 | 3 | 0 | 34 | 79 | 130 | 175 | 2.98e-17 | 87.8 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1148490 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148490 | MtrunA17_Chr5g0441271 | 93.478 | 46 | 3 | 0 | 34 | 79 | 130 | 175 | 5.74e-21 | 87.8 |
| Msa1148490 | MtrunA17_Chr3g0113051 | 97.143 | 35 | 1 | 0 | 3 | 37 | 12 | 46 | 2.41e-18 | 77.4 |
| Msa1148490 | MtrunA17_Chr1g0152431 | 71.429 | 35 | 10 | 0 | 3 | 37 | 12 | 46 | 4.30e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148490 | AT2G39900.1 | 77.143 | 35 | 8 | 0 | 3 | 37 | 12 | 46 | 1.08e-12 | 62.8 |
| Msa1148490 | AT1G10200.1 | 74.286 | 35 | 9 | 0 | 3 | 37 | 12 | 46 | 7.29e-12 | 60.5 |
| Msa1148490 | AT3G55770.6 | 65.714 | 35 | 12 | 0 | 3 | 37 | 12 | 46 | 7.00e-11 | 57.0 |
| Msa1148490 | AT3G55770.4 | 65.714 | 35 | 12 | 0 | 3 | 37 | 12 | 46 | 7.81e-11 | 56.6 |
Find 35 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTGCAAAGGAACTTTAA+AGG | 0.270879 | 7_4:-28572392 | Msa1148490:intron |
| AGCATCTGAAACAAGCTTTA+TGG | 0.273670 | 7_4:+28572416 | None:intergenic |
| GTGCCCACAAATGGATTTCT+TGG | 0.317699 | 7_4:+28570188 | None:intergenic |
| CTTTAGGCATCATTATGTTA+TGG | 0.349945 | 7_4:-28570232 | Msa1148490:intron |
| CACTGAGTAACTTCATTCTC+AGG | 0.377098 | 7_4:+28570144 | None:intergenic |
| TTTGAAACTTCTAGATGCTT+AGG | 0.384878 | 7_4:-28570612 | Msa1148490:CDS |
| TAGTTTCTTAAGACGTTCAT+TGG | 0.410981 | 7_4:-28571505 | Msa1148490:CDS |
| TTCTTGGCAGCAGTTGTAGC+CGG | 0.420446 | 7_4:+28570204 | None:intergenic |
| GAGATCTTGGAGGCTTTCTT+CGG | 0.443047 | 7_4:-28570652 | Msa1148490:CDS |
| TCCTGGAGGGTGCCCACAAA+TGG | 0.455718 | 7_4:+28570179 | None:intergenic |
| TCCATTTGTGGGCACCCTCC+AGG | 0.459365 | 7_4:-28570180 | Msa1148490:CDS |
| TCAGCAGAAATCTGATCAAC+GGG | 0.460544 | 7_4:+28572451 | None:intergenic |
| ATTGGCGATATTCTTAGCTC+AGG | 0.462898 | 7_4:-28571487 | Msa1148490:intron |
| ACTTCTAGATGCTTAGGTTG+TGG | 0.474247 | 7_4:-28570606 | Msa1148490:CDS |
| TCAGGGTTACTAGTGGCTCC+TGG | 0.477466 | 7_4:+28570162 | None:intergenic |
| ATGCAAGGCTTGTGAGAAAA+CGG | 0.479151 | 7_4:-28572479 | Msa1148490:intron |
| TCTTGGCAGCAGTTGTAGCC+GGG | 0.496117 | 7_4:+28570205 | None:intergenic |
| AGGCTTTCTTCGGTACCTAT+CGG | 0.511783 | 7_4:-28570642 | Msa1148490:CDS |
| CTGCCAAGAAATCCATTTGT+GGG | 0.523460 | 7_4:-28570191 | Msa1148490:CDS |
| GGTTACTAGTGGCTCCTGGA+GGG | 0.524341 | 7_4:+28570166 | None:intergenic |
| TGTGGAGGATCCTTCGTACA+TGG | 0.525637 | 7_4:-28570588 | Msa1148490:CDS |
| TGATTGACATATATTCTGTA+AGG | 0.531811 | 7_4:+28571563 | None:intergenic |
| TCATTATGTTATGGTTAGCC+CGG | 0.531861 | 7_4:-28570223 | Msa1148490:CDS |
| GCTGCCAAGAAATCCATTTG+TGG | 0.536165 | 7_4:-28570192 | Msa1148490:CDS |
| GTTGATCAGATTTCTGCTGA+TGG | 0.537601 | 7_4:-28572448 | Msa1148490:CDS |
| ATCAGCAGAAATCTGATCAA+CGG | 0.553893 | 7_4:+28572450 | None:intergenic |
| TTCAGATGCTCTCACTGCAA+AGG | 0.579144 | 7_4:-28572403 | Msa1148490:CDS |
| GGGTTACTAGTGGCTCCTGG+AGG | 0.583676 | 7_4:+28570165 | None:intergenic |
| TCTAGATGCTTAGGTTGTGG+AGG | 0.586160 | 7_4:-28570603 | Msa1148490:CDS |
| ACTGAGTAACTTCATTCTCA+GGG | 0.594611 | 7_4:+28570145 | None:intergenic |
| TTCATTCTCAGGGTTACTAG+TGG | 0.609555 | 7_4:+28570155 | None:intergenic |
| GAGACTGTTAAGTTGTTGCG+TGG | 0.634290 | 7_4:-28571606 | Msa1148490:intron |
| GTTTCAAAATCACATCCGAT+AGG | 0.634694 | 7_4:+28570627 | None:intergenic |
| AACATTGTGGACTACAAACG+CGG | 0.674819 | 7_4:+28570564 | None:intergenic |
| CAAACGCGGTCCATGTACGA+AGG | 0.695333 | 7_4:+28570578 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTTTTTTTATTGG+AGG | + | chr7_4:28570789-28570808 | None:intergenic | 10.0% |
| !!! | ATTTTTTATGTTTATGATAT+TGG | - | chr7_4:28571054-28571073 | Msa1148490:intron | 10.0% |
| !!! | TTTTTTATGTTTATGATATT+GGG | - | chr7_4:28571055-28571074 | Msa1148490:intron | 10.0% |
| !! | AAATAGTTTCTCAAAGAAAT+GGG | + | chr7_4:28570519-28570538 | None:intergenic | 20.0% |
| !! | GAAAAGATACAAAATAAACA+GGG | + | chr7_4:28570649-28570668 | None:intergenic | 20.0% |
| !!! | GGGTATAAATTTTTTTTTTG+AGG | + | chr7_4:28570752-28570771 | None:intergenic | 20.0% |
| !!! | CAACTTTATTTGATATAAGT+TGG | - | chr7_4:28571159-28571178 | Msa1148490:intron | 20.0% |
| !! | TATATTTAGACACATAAAAG+TGG | - | chr7_4:28571202-28571221 | Msa1148490:intron | 20.0% |
| !! | ATATTTAGACACATAAAAGT+GGG | - | chr7_4:28571203-28571222 | Msa1148490:intron | 20.0% |
| !! | CTTTAATGATATAGATAGAT+CGG | - | chr7_4:28571249-28571268 | Msa1148490:intron | 20.0% |
| !! | ATGCTTTCAACAATTTAAAT+AGG | + | chr7_4:28571277-28571296 | None:intergenic | 20.0% |
| !! | AAAATAGATTGATAGAGATT+TGG | - | chr7_4:28571551-28571570 | Msa1148490:CDS | 20.0% |
| !! | TTAAAATTTCTCTTGGATAA+AGG | + | chr7_4:28572153-28572172 | None:intergenic | 20.0% |
| !! | TTACTTTCATGATGAAATTA+TGG | - | chr7_4:28572343-28572362 | Msa1148490:intron | 20.0% |
| !! | TACTTTCATGATGAAATTAT+GGG | - | chr7_4:28572344-28572363 | Msa1148490:intron | 20.0% |
| !!! | TTCTAAAATAAATCGTCTTA+AGG | - | chr7_4:28572890-28572909 | Msa1148490:intron | 20.0% |
| ! | TACAAAACACATTGATATCA+GGG | + | chr7_4:28570273-28570292 | None:intergenic | 25.0% |
| !! | TATCAATGTGTTTTGTAGAA+TGG | - | chr7_4:28570276-28570295 | Msa1148490:intron | 25.0% |
| !! | ATCAATGTGTTTTGTAGAAT+GGG | - | chr7_4:28570277-28570296 | Msa1148490:intron | 25.0% |
| ! | CAAATAGTTTCTCAAAGAAA+TGG | + | chr7_4:28570520-28570539 | None:intergenic | 25.0% |
| !!! | TTTGAGAAACTATTTGTTGT+GGG | - | chr7_4:28570524-28570543 | Msa1148490:intron | 25.0% |
| ! | GGAAAAGATACAAAATAAAC+AGG | + | chr7_4:28570650-28570669 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTATTGGAGGATC+AGG | + | chr7_4:28570783-28570802 | None:intergenic | 25.0% |
| ! | ATTATCAATGTACTACTGAA+TGG | + | chr7_4:28571036-28571055 | None:intergenic | 25.0% |
| ! | TTCACCATCGAAATAAAATT+GGG | - | chr7_4:28571132-28571151 | Msa1148490:intron | 25.0% |
| !!! | TTATCCCAATTTTATTTCGA+TGG | + | chr7_4:28571139-28571158 | None:intergenic | 25.0% |
| !! | ACATAAAAGTGGGAATTTTA+TGG | - | chr7_4:28571213-28571232 | Msa1148490:intron | 25.0% |
| !! | CATAAAAGTGGGAATTTTAT+GGG | - | chr7_4:28571214-28571233 | Msa1148490:intron | 25.0% |
| !! | TTAAATTGTTGAAAGCATGT+TGG | - | chr7_4:28571279-28571298 | Msa1148490:intron | 25.0% |
| ! | ACACTGTTTCAAATTTCAAT+CGG | - | chr7_4:28571481-28571500 | Msa1148490:intron | 25.0% |
| ! | GTGTTCAGAAATAAGATAAT+AGG | - | chr7_4:28571679-28571698 | Msa1148490:intron | 25.0% |
| ! | TAATAGGAAAGCTTATTTCA+TGG | - | chr7_4:28571695-28571714 | Msa1148490:intron | 25.0% |
| ! | TGATTGACATATATTCTGTA+AGG | + | chr7_4:28571796-28571815 | None:intergenic | 25.0% |
| !! | TTACTTGTGTTTTGTGATTA+GGG | - | chr7_4:28571931-28571950 | Msa1148490:intron | 25.0% |
| ! | TCTTGGATTAAAATTTCTCT+TGG | + | chr7_4:28572160-28572179 | None:intergenic | 25.0% |
| !!! | AAACGTTTTGATTTTATCAC+TGG | - | chr7_4:28572262-28572281 | Msa1148490:intron | 25.0% |
| ! | AAAATAAAGGAACAACATTG+TGG | + | chr7_4:28572808-28572827 | None:intergenic | 25.0% |
| ! | TAAAATAAATCGTCTTAAGG+TGG | - | chr7_4:28572893-28572912 | Msa1148490:intron | 25.0% |
| !!! | GTAAAGAAAGGTTTTAACAT+AGG | + | chr7_4:28572997-28573016 | None:intergenic | 25.0% |
| !! | TTGTGAATGGAACATTTTAA+AGG | + | chr7_4:28573104-28573123 | None:intergenic | 25.0% |
| ATGCCAGTAAAATAATAACG+GGG | - | chr7_4:28570143-28570162 | Msa1148490:CDS | 30.0% | |
| !! | TTTCCCCGTTATTATTTTAC+TGG | + | chr7_4:28570149-28570168 | None:intergenic | 30.0% |
| ! | AGTAAAATAATAACGGGGAA+AGG | - | chr7_4:28570148-28570167 | Msa1148490:CDS | 30.0% |
| ! | GTAAAATAATAACGGGGAAA+GGG | - | chr7_4:28570149-28570168 | Msa1148490:CDS | 30.0% |
| AATGTAACCAATTTACGATG+TGG | - | chr7_4:28570178-28570197 | Msa1148490:CDS | 30.0% | |
| !! | TTTGATGATGATGATCGATT+AGG | - | chr7_4:28570233-28570252 | Msa1148490:intron | 30.0% |
| CTACAAAACACATTGATATC+AGG | + | chr7_4:28570274-28570293 | None:intergenic | 30.0% | |
| TAATAAATGCTAAGAACCTG+AGG | + | chr7_4:28570342-28570361 | None:intergenic | 30.0% | |
| TCAGGTTCTTAGCATTTATT+AGG | - | chr7_4:28570341-28570360 | Msa1148490:intron | 30.0% | |
| ATAAAAGTCACAATTCACCA+TGG | - | chr7_4:28570375-28570394 | Msa1148490:intron | 30.0% | |
| TAAAAGTCACAATTCACCAT+GGG | - | chr7_4:28570376-28570395 | Msa1148490:intron | 30.0% | |
| AGTCATAATTCACTAACATG+TGG | + | chr7_4:28570437-28570456 | None:intergenic | 30.0% | |
| ATTGTCTAACCTCTTTCTTA+GGG | + | chr7_4:28570491-28570510 | None:intergenic | 30.0% | |
| AATTGTCTAACCTCTTTCTT+AGG | + | chr7_4:28570492-28570511 | None:intergenic | 30.0% | |
| AAGAAAGAGGTTAGACAATT+TGG | - | chr7_4:28570492-28570511 | Msa1148490:intron | 30.0% | |
| ! | CTTTGAGAAACTATTTGTTG+TGG | - | chr7_4:28570523-28570542 | Msa1148490:intron | 30.0% |
| ! | AAAGTTGCTCAAGTAGTTTT+AGG | + | chr7_4:28570626-28570645 | None:intergenic | 30.0% |
| !!! | ACTTGTTTTGTTTTCTGCAA+TGG | - | chr7_4:28571010-28571029 | Msa1148490:intron | 30.0% |
| !! | CAATTTTATTTCGATGGTGA+AGG | + | chr7_4:28571133-28571152 | None:intergenic | 30.0% |
| CTTCACCATCGAAATAAAAT+TGG | - | chr7_4:28571131-28571150 | Msa1148490:intron | 30.0% | |
| !!! | AAACAGTGTTGTTTTGGAAA+GGG | + | chr7_4:28571512-28571531 | None:intergenic | 30.0% |
| !!! | TTCAACAAACAGTGTTGTTT+TGG | + | chr7_4:28571518-28571537 | None:intergenic | 30.0% |
| !! | TTGATAGAGATTTGGTGATA+TGG | - | chr7_4:28571559-28571578 | Msa1148490:CDS | 30.0% |
| !! | GATTTGGTGATATGGATAAA+AGG | - | chr7_4:28571567-28571586 | Msa1148490:CDS | 30.0% |
| TAAATTGTCAGTGCTATGTA+TGG | - | chr7_4:28571611-28571630 | Msa1148490:intron | 30.0% | |
| !! | TATTTCATGGTTTTTGAGAG+AGG | - | chr7_4:28571708-28571727 | Msa1148490:intron | 30.0% |
| TAGTTTCTTAAGACGTTCAT+TGG | - | chr7_4:28571851-28571870 | Msa1148490:intron | 30.0% | |
| ! | GTTACTTGTGTTTTGTGATT+AGG | - | chr7_4:28571930-28571949 | Msa1148490:intron | 30.0% |
| CAATAAACAATGATCACACA+AGG | + | chr7_4:28571970-28571989 | None:intergenic | 30.0% | |
| ATTTCTCTTGGATAAAGGAT+TGG | + | chr7_4:28572148-28572167 | None:intergenic | 30.0% | |
| ACAATGTCTAGTTAAGACTA+TGG | + | chr7_4:28572206-28572225 | None:intergenic | 30.0% | |
| TAACTAGACATTGTGTGATA+TGG | - | chr7_4:28572212-28572231 | Msa1148490:intron | 30.0% | |
| AGTAAACTCTTTCTTTGTAC+TGG | - | chr7_4:28572533-28572552 | Msa1148490:intron | 30.0% | |
| ! | TCTTTGTACTGGTCTAATAT+TGG | - | chr7_4:28572544-28572563 | Msa1148490:intron | 30.0% |
| !! | TAATATTGGCCTCCTTTTTA+TGG | - | chr7_4:28572558-28572577 | Msa1148490:intron | 30.0% |
| ACATCTCTGATGATTTGAAT+AGG | - | chr7_4:28572581-28572600 | Msa1148490:intron | 30.0% | |
| AAGATTTCATCACTCATCAA+AGG | + | chr7_4:28572664-28572683 | None:intergenic | 30.0% | |
| TGATGAGTGATGAAATCTTT+AGG | - | chr7_4:28572665-28572684 | Msa1148490:intron | 30.0% | |
| ! | TTTGAAACTTCTAGATGCTT+AGG | - | chr7_4:28572744-28572763 | Msa1148490:intron | 30.0% |
| GACACACTCATACAAAATAA+AGG | + | chr7_4:28572821-28572840 | None:intergenic | 30.0% | |
| CAAAGTACACAACTGATATA+GGG | + | chr7_4:28572919-28572938 | None:intergenic | 30.0% | |
| ACAAAGTACACAACTGATAT+AGG | + | chr7_4:28572920-28572939 | None:intergenic | 30.0% | |
| AACATGGAAGATGTAAAGAA+AGG | + | chr7_4:28573009-28573028 | None:intergenic | 30.0% | |
| TTTACATCTTCCATGTTCAA+TGG | - | chr7_4:28573012-28573031 | Msa1148490:intron | 30.0% | |
| !!! | TTTTAAAGGCTCTAAACACT+AGG | + | chr7_4:28573090-28573109 | None:intergenic | 30.0% |
| AATGTTCCATTCACAACTTT+AGG | - | chr7_4:28573108-28573127 | Msa1148490:intron | 30.0% | |
| CTTTAGGCATCATTATGTTA+TGG | - | chr7_4:28573124-28573143 | Msa1148490:intron | 30.0% | |
| TGAGAGACAAAACAGATGTA+AGG | - | chr7_4:28570209-28570228 | Msa1148490:CDS | 35.0% | |
| GAGAGACAAAACAGATGTAA+GGG | - | chr7_4:28570210-28570229 | Msa1148490:CDS | 35.0% | |
| AAAACACATTGATATCAGGG+AGG | + | chr7_4:28570270-28570289 | None:intergenic | 35.0% | |
| GCATTTATTAGGTCTGTCTA+CGG | - | chr7_4:28570352-28570371 | Msa1148490:intron | 35.0% | |
| ATATGATTCGTTTCATGCGT+TGG | - | chr7_4:28570461-28570480 | Msa1148490:intron | 35.0% | |
| TATGATTCGTTTCATGCGTT+GGG | - | chr7_4:28570462-28570481 | Msa1148490:intron | 35.0% | |
| !!! | CTCAAGTAGTTTTAGGAAAC+CGG | + | chr7_4:28570619-28570638 | None:intergenic | 35.0% |
| ! | ACAAGCCTTGCATTTTTGTT+GGG | + | chr7_4:28570870-28570889 | None:intergenic | 35.0% |
| ATCAGCAGAAATCTGATCAA+CGG | + | chr7_4:28570909-28570928 | None:intergenic | 35.0% | |
| ! | AGCATCTGAAACAAGCTTTA+TGG | + | chr7_4:28570943-28570962 | None:intergenic | 35.0% |
| TCACTGCAAAGGAACTTTAA+AGG | - | chr7_4:28570964-28570983 | Msa1148490:intron | 35.0% | |
| ! | TTGTTGAAAGCATGTTGGAT+CGG | - | chr7_4:28571284-28571303 | Msa1148490:intron | 35.0% |
| !!! | AACAGTGTTGTTTTGGAAAG+GGG | + | chr7_4:28571511-28571530 | None:intergenic | 35.0% |
| !!! | CAAACAGTGTTGTTTTGGAA+AGG | + | chr7_4:28571513-28571532 | None:intergenic | 35.0% |
| TGATATGGATAAAAGGCTCT+TGG | - | chr7_4:28571574-28571593 | Msa1148490:CDS | 35.0% | |
| ACAAGTAACACTCGAAAACA+AGG | + | chr7_4:28571919-28571938 | None:intergenic | 35.0% | |
| TTTGCGACTCTGATGTTATT+AGG | - | chr7_4:28572000-28572019 | Msa1148490:intron | 35.0% | |
| AAGCTCTCTAATTCTTGGAA+AGG | + | chr7_4:28572113-28572132 | None:intergenic | 35.0% | |
| TTTCCAAGAATTAGAGAGCT+TGG | - | chr7_4:28572112-28572131 | Msa1148490:intron | 35.0% | |
| ! | TCTTGGATAAAGGATTGGTA+GGG | + | chr7_4:28572143-28572162 | None:intergenic | 35.0% |
| ! | GCAACTACAAGGAGTATAAA+AGG | + | chr7_4:28572184-28572203 | None:intergenic | 35.0% |
| TTAAGACTATGGCAACTACA+AGG | + | chr7_4:28572195-28572214 | None:intergenic | 35.0% | |
| AAACATTGTCCCTGAGAATT+CGG | + | chr7_4:28572315-28572334 | None:intergenic | 35.0% | |
| GAACGATATGTGGTCATAAT+TGG | + | chr7_4:28572463-28572482 | None:intergenic | 35.0% | |
| CATCAGAGATGTCCATAAAA+AGG | + | chr7_4:28572573-28572592 | None:intergenic | 35.0% | |
| TGAAACCAAGTAGGGATAAT+GGG | + | chr7_4:28572631-28572650 | None:intergenic | 35.0% | |
| TTGAAACCAAGTAGGGATAA+TGG | + | chr7_4:28572632-28572651 | None:intergenic | 35.0% | |
| !! | ACTAGCTTTGAAACCAAGTA+GGG | + | chr7_4:28572639-28572658 | None:intergenic | 35.0% |
| !! | AACTAGCTTTGAAACCAAGT+AGG | + | chr7_4:28572640-28572659 | None:intergenic | 35.0% |
| ! | CCAAGATCTCTGAAAATTGA+AGG | + | chr7_4:28572694-28572713 | None:intergenic | 35.0% |
| ! | CCTTCAATTTTCAGAGATCT+TGG | - | chr7_4:28572691-28572710 | Msa1148490:intron | 35.0% |
| ! | TCAATTTTCAGAGATCTTGG+AGG | - | chr7_4:28572694-28572713 | Msa1148490:intron | 35.0% |
| GTTTCAAAATCACATCCGAT+AGG | + | chr7_4:28572732-28572751 | None:intergenic | 35.0% | |
| CCATCTCAGTAGACAAAAAA+GGG | + | chr7_4:28572867-28572886 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTGTCTACTGAGAT+GGG | - | chr7_4:28572865-28572884 | Msa1148490:intron | 35.0% |
| CTACATGAATGCCTTTGTTA+TGG | - | chr7_4:28572947-28572966 | Msa1148490:intron | 35.0% | |
| ACATTGGTGTACCATAACAA+AGG | + | chr7_4:28572961-28572980 | None:intergenic | 35.0% | |
| ! | GCTAGATTTTCCATTGAACA+TGG | + | chr7_4:28573025-28573044 | None:intergenic | 35.0% |
| TGTTCAATGGAAAATCTAGC+AGG | - | chr7_4:28573025-28573044 | Msa1148490:intron | 35.0% | |
| GTTCAATGGAAAATCTAGCA+GGG | - | chr7_4:28573026-28573045 | Msa1148490:intron | 35.0% | |
| TTCAATGGAAAATCTAGCAG+GGG | - | chr7_4:28573027-28573046 | Msa1148490:intron | 35.0% | |
| TAAATGACACGATTCCTTGA+CGG | + | chr7_4:28573058-28573077 | None:intergenic | 35.0% | |
| ATGATGCCTAAAGTTGTGAA+TGG | + | chr7_4:28573117-28573136 | None:intergenic | 35.0% | |
| ! | TCATTATGTTATGGTTAGCC+CGG | - | chr7_4:28573133-28573152 | Msa1148490:intron | 35.0% |
| ACTGAGTAACTTCATTCTCA+GGG | + | chr7_4:28573214-28573233 | None:intergenic | 35.0% | |
| GAGACATCCACATCGTAAAT+TGG | + | chr7_4:28570188-28570207 | None:intergenic | 40.0% | |
| TGTTGTGGGATTGTAACTGT+AGG | - | chr7_4:28570538-28570557 | Msa1148490:intron | 40.0% | |
| ! | GGCATTTGTTGGATCTTATG+CGG | - | chr7_4:28570587-28570606 | Msa1148490:CDS | 40.0% |
| !!! | TTTTTTTGAGGCCCATCCTT+GGG | + | chr7_4:28570740-28570759 | None:intergenic | 40.0% |
| !!! | TTTTTTTTGAGGCCCATCCT+TGG | + | chr7_4:28570741-28570760 | None:intergenic | 40.0% |
| TACCATTGATGAGTGATGAG+CGG | + | chr7_4:28570847-28570866 | None:intergenic | 40.0% | |
| TGGTACCCAACAAAAATGCA+AGG | - | chr7_4:28570862-28570881 | Msa1148490:intron | 40.0% | |
| ! | CACAAGCCTTGCATTTTTGT+TGG | + | chr7_4:28570871-28570890 | None:intergenic | 40.0% |
| ATGCAAGGCTTGTGAGAAAA+CGG | - | chr7_4:28570877-28570896 | Msa1148490:intron | 40.0% | |
| TCAGCAGAAATCTGATCAAC+GGG | + | chr7_4:28570908-28570927 | None:intergenic | 40.0% | |
| GTTGATCAGATTTCTGCTGA+TGG | - | chr7_4:28570908-28570927 | Msa1148490:intron | 40.0% | |
| GCTTATTTGAGCTTATCCAC+TGG | - | chr7_4:28571306-28571325 | Msa1148490:intron | 40.0% | |
| ! | GCACTGACAATTTAGACCAA+AGG | + | chr7_4:28571605-28571624 | None:intergenic | 40.0% |
| ! | AGAGGTCTGTGTGCTTTTAT+TGG | - | chr7_4:28571726-28571745 | Msa1148490:intron | 40.0% |
| ATTGGCGATATTCTTAGCTC+AGG | - | chr7_4:28571869-28571888 | Msa1148490:intron | 40.0% | |
| TTCCCGAGAAATTTGAGTCT+CGG | - | chr7_4:28572081-28572100 | Msa1148490:intron | 40.0% | |
| AGACCAAGCTCTCTAATTCT+TGG | + | chr7_4:28572118-28572137 | None:intergenic | 40.0% | |
| ! | CTCTTGGATAAAGGATTGGT+AGG | + | chr7_4:28572144-28572163 | None:intergenic | 40.0% |
| ! | CAAGGAGTATAAAAGGCTCT+TGG | + | chr7_4:28572177-28572196 | None:intergenic | 40.0% |
| TGTGATATGGCTAACTCATG+TGG | - | chr7_4:28572225-28572244 | Msa1148490:intron | 40.0% | |
| !! | GTGTCTGGTTCTTAGACTTT+AGG | - | chr7_4:28572509-28572528 | Msa1148490:intron | 40.0% |
| CAGAGATGTCCATAAAAAGG+AGG | + | chr7_4:28572570-28572589 | None:intergenic | 40.0% | |
| ! | ACTTCTAGATGCTTAGGTTG+TGG | - | chr7_4:28572750-28572769 | Msa1148490:intron | 40.0% |
| ! | AACATTGTGGACTACAAACG+CGG | + | chr7_4:28572795-28572814 | None:intergenic | 40.0% |
| !!! | CCCTTTTTTGTCTACTGAGA+TGG | - | chr7_4:28572864-28572883 | Msa1148490:intron | 40.0% |
| CCCATCTCAGTAGACAAAAA+AGG | + | chr7_4:28572868-28572887 | None:intergenic | 40.0% | |
| ACACCAATGTTACGACATTG+AGG | - | chr7_4:28572971-28572990 | Msa1148490:intron | 40.0% | |
| !! | AAAGGCTCTAAACACTAGGT+AGG | + | chr7_4:28573086-28573105 | None:intergenic | 40.0% |
| CTGCCAAGAAATCCATTTGT+GGG | - | chr7_4:28573165-28573184 | Msa1148490:intron | 40.0% | |
| TTCATTCTCAGGGTTACTAG+TGG | + | chr7_4:28573204-28573223 | None:intergenic | 40.0% | |
| CACTGAGTAACTTCATTCTC+AGG | + | chr7_4:28573215-28573234 | None:intergenic | 40.0% | |
| !! | GTTTTGTAGAATGGGCTCCT+TGG | - | chr7_4:28570285-28570304 | Msa1148490:intron | 45.0% |
| AACTGATAGAAGCTGGACCA+AGG | + | chr7_4:28570305-28570324 | None:intergenic | 45.0% | |
| TTGGTCCAGCTTCTATCAGT+TGG | - | chr7_4:28570304-28570323 | Msa1148490:intron | 45.0% | |
| AGAAGCCAACTGATAGAAGC+TGG | + | chr7_4:28570312-28570331 | None:intergenic | 45.0% | |
| ! | TTGGCTTCTCTTTTGTCCTC+AGG | - | chr7_4:28570323-28570342 | Msa1148490:intron | 45.0% |
| GTTGGGTTTCCCTAAGAAAG+AGG | - | chr7_4:28570479-28570498 | Msa1148490:intron | 45.0% | |
| CCAACACGAGAAGCTGAAAA+GGG | + | chr7_4:28570569-28570588 | None:intergenic | 45.0% | |
| ! | CTTCTCGTGTTGGCATTTGT+TGG | - | chr7_4:28570576-28570595 | Msa1148490:intron | 45.0% |
| GGATCTTATGCGGTTTCAAC+CGG | - | chr7_4:28570597-28570616 | Msa1148490:CDS | 45.0% | |
| CTGGGAAGAAGAAGACAATG+TGG | + | chr7_4:28570671-28570690 | None:intergenic | 45.0% | |
| CACATTGTCTTCTTCTTCCC+AGG | - | chr7_4:28570669-28570688 | Msa1148490:intron | 45.0% | |
| !!! | TTTTTTGAGGCCCATCCTTG+GGG | + | chr7_4:28570739-28570758 | None:intergenic | 45.0% |
| TGGAGGATCAGGATAGTACT+GGG | + | chr7_4:28570772-28570791 | None:intergenic | 45.0% | |
| TTGGAGGATCAGGATAGTAC+TGG | + | chr7_4:28570773-28570792 | None:intergenic | 45.0% | |
| TTCAGATGCTCTCACTGCAA+AGG | - | chr7_4:28570953-28570972 | Msa1148490:intron | 45.0% | |
| ! | GAGACTGTTAAGTTGTTGCG+TGG | - | chr7_4:28571750-28571769 | Msa1148490:intron | 45.0% |
| ! | TAGCTCAGGTTTGCTTCACT+TGG | - | chr7_4:28571883-28571902 | Msa1148490:intron | 45.0% |
| TCCCGAGAAATTTGAGTCTC+GGG | - | chr7_4:28572082-28572101 | Msa1148490:intron | 45.0% | |
| ACCCGAGACTCAAATTTCTC+GGG | + | chr7_4:28572086-28572105 | None:intergenic | 45.0% | |
| GACCCGAGACTCAAATTTCT+CGG | + | chr7_4:28572087-28572106 | None:intergenic | 45.0% | |
| AGTTCTTCGTACTGCTTGGT+GGG | - | chr7_4:28572369-28572388 | Msa1148490:intron | 45.0% | |
| AATGTTCTTCATCGCCAACG+CGG | - | chr7_4:28572396-28572415 | Msa1148490:CDS | 45.0% | |
| CTAGATTCTAGGCTTGTGTC+TGG | - | chr7_4:28572494-28572513 | Msa1148490:intron | 45.0% | |
| AGGAAGATGAGTTACCCTAG+AGG | - | chr7_4:28572601-28572620 | Msa1148490:intron | 45.0% | |
| GAGATCTTGGAGGCTTTCTT+CGG | - | chr7_4:28572704-28572723 | Msa1148490:intron | 45.0% | |
| AGGCTTTCTTCGGTACCTAT+CGG | - | chr7_4:28572714-28572733 | Msa1148490:intron | 45.0% | |
| ! | TCTAGATGCTTAGGTTGTGG+AGG | - | chr7_4:28572753-28572772 | Msa1148490:intron | 45.0% |
| TGTATGAGTGTGTCCTCTTC+TGG | - | chr7_4:28572827-28572846 | Msa1148490:intron | 45.0% | |
| AGTGTGTCCTCTTCTGGATT+GGG | - | chr7_4:28572833-28572852 | Msa1148490:intron | 45.0% | |
| AGGCCTCAATGTCGTAACAT+TGG | + | chr7_4:28572977-28572996 | None:intergenic | 45.0% | |
| GCTGCCAAGAAATCCATTTG+TGG | - | chr7_4:28573164-28573183 | Msa1148490:intron | 45.0% | |
| ! | GTGCCCACAAATGGATTTCT+TGG | + | chr7_4:28573171-28573190 | None:intergenic | 45.0% |
| !!! | ATGAAATATTTTTTTTTTAT+TGG | + | chr7_4:28570792-28570811 | None:intergenic | 5.0% |
| !! | ATATATAATTATAATTACAA+TGG | - | chr7_4:28572057-28572076 | Msa1148490:intron | 5.0% |
| !! | TATATAATTATAATTACAAT+GGG | - | chr7_4:28572058-28572077 | Msa1148490:intron | 5.0% |
| GAAGATGCCTCCTGACCAAA+AGG | + | chr7_4:28570408-28570427 | None:intergenic | 50.0% | |
| ! | CCCTTTTCAGCTTCTCGTGT+TGG | - | chr7_4:28570566-28570585 | Msa1148490:intron | 50.0% |
| GCCAACACGAGAAGCTGAAA+AGG | + | chr7_4:28570570-28570589 | None:intergenic | 50.0% | |
| TGCAAACAGCTCAAACGAGC+TGG | - | chr7_4:28570708-28570727 | Msa1148490:intron | 50.0% | |
| GCAAACAGCTCAAACGAGCT+GGG | - | chr7_4:28570709-28570728 | Msa1148490:intron | 50.0% | |
| !!! | TTTTTGAGGCCCATCCTTGG+GGG | + | chr7_4:28570738-28570757 | None:intergenic | 50.0% |
| GGCAGCGTCAAACAAAAGCA+AGG | + | chr7_4:28571112-28571131 | None:intergenic | 50.0% | |
| TCCACTGGTATGCACTAGTG+AGG | - | chr7_4:28571321-28571340 | Msa1148490:intron | 50.0% | |
| CCACTGGTATGCACTAGTGA+GGG | - | chr7_4:28571322-28571341 | Msa1148490:intron | 50.0% | |
| TGCACTAGTGAGGGACTGTA+TGG | - | chr7_4:28571331-28571350 | Msa1148490:intron | 50.0% | |
| AAGGCTCTTGGACATGCCTT+TGG | - | chr7_4:28571586-28571605 | Msa1148490:CDS | 50.0% | |
| !! | TCGGCTCGGGAAATGAAAAG+AGG | + | chr7_4:28572288-28572307 | None:intergenic | 50.0% |
| CATTGTCCCTGAGAATTCGG+AGG | + | chr7_4:28572312-28572331 | None:intergenic | 50.0% | |
| GGTGAGTTCTTCGTACTGCT+TGG | - | chr7_4:28572365-28572384 | Msa1148490:intron | 50.0% | |
| GAGTTCTTCGTACTGCTTGG+TGG | - | chr7_4:28572368-28572387 | Msa1148490:intron | 50.0% | |
| CTGGTGATTTCGATCTCGCT+GGG | - | chr7_4:28572427-28572446 | Msa1148490:CDS | 50.0% | |
| ACCACATATCGTTCGAGCGT+TGG | - | chr7_4:28572469-28572488 | Msa1148490:CDS | 50.0% | |
| CCACATATCGTTCGAGCGTT+GGG | - | chr7_4:28572470-28572489 | Msa1148490:CDS | 50.0% | |
| ! | CACATATCGTTCGAGCGTTG+GGG | - | chr7_4:28572471-28572490 | Msa1148490:CDS | 50.0% |
| AGATGAGTTACCCTAGAGGC+AGG | - | chr7_4:28572605-28572624 | Msa1148490:intron | 50.0% | |
| TGTGGAGGATCCTTCGTACA+TGG | - | chr7_4:28572768-28572787 | Msa1148490:intron | 50.0% | |
| GAGTGTGTCCTCTTCTGGAT+TGG | - | chr7_4:28572832-28572851 | Msa1148490:intron | 50.0% | |
| GTGTGTCCTCTTCTGGATTG+GGG | - | chr7_4:28572834-28572853 | Msa1148490:intron | 50.0% | |
| GTATCACCCCAATCCAGAAG+AGG | + | chr7_4:28572843-28572862 | None:intergenic | 50.0% | |
| ! | GCTCTAAACACTAGGTAGGC+TGG | + | chr7_4:28573082-28573101 | None:intergenic | 50.0% |
| TTCTTGGCAGCAGTTGTAGC+CGG | + | chr7_4:28573155-28573174 | None:intergenic | 50.0% | |
| ! | CACCATGGGTCTCGACCTTT+TGG | - | chr7_4:28570390-28570409 | Msa1148490:intron | 55.0% |
| GACCAAAAGGTCGAGACCCA+TGG | + | chr7_4:28570395-28570414 | None:intergenic | 55.0% | |
| ! | TGGGTCTCGACCTTTTGGTC+AGG | - | chr7_4:28570395-28570414 | Msa1148490:intron | 55.0% |
| ! | GTCTCGACCTTTTGGTCAGG+AGG | - | chr7_4:28570398-28570417 | Msa1148490:intron | 55.0% |
| TGTCTTCTTCTTCCCAGGCC+CGG | - | chr7_4:28570674-28570693 | Msa1148490:intron | 55.0% | |
| CGCCGCTCATCACTCATCAA+TGG | - | chr7_4:28570842-28570861 | Msa1148490:intron | 55.0% | |
| CCCTCACTAGTGCATACCAG+TGG | + | chr7_4:28571325-28571344 | None:intergenic | 55.0% | |
| TCCCTGAGAATTCGGAGGCT+CGG | + | chr7_4:28572307-28572326 | None:intergenic | 55.0% | |
| CACCAGCATCAAAACCGCGT+TGG | + | chr7_4:28572413-28572432 | None:intergenic | 55.0% | |
| GCTGGTGATTTCGATCTCGC+TGG | - | chr7_4:28572426-28572445 | Msa1148490:CDS | 55.0% | |
| CCCAACGCTCGAACGATATG+TGG | + | chr7_4:28572473-28572492 | None:intergenic | 55.0% | |
| !! | GAGCGTTGGGGCTAGATTCT+AGG | - | chr7_4:28572483-28572502 | Msa1148490:intron | 55.0% |
| !! | GGATAATGGGCCTGCCTCTA+GGG | + | chr7_4:28572618-28572637 | None:intergenic | 55.0% |
| GCAGGCCCATTATCCCTACT+TGG | - | chr7_4:28572623-28572642 | Msa1148490:intron | 55.0% | |
| CAAACGCGGTCCATGTACGA+AGG | + | chr7_4:28572781-28572800 | None:intergenic | 55.0% | |
| TCTTGGCAGCAGTTGTAGCC+GGG | + | chr7_4:28573154-28573173 | None:intergenic | 55.0% | |
| GGTTACTAGTGGCTCCTGGA+GGG | + | chr7_4:28573193-28573212 | None:intergenic | 55.0% | |
| TCAGGGTTACTAGTGGCTCC+TGG | + | chr7_4:28573197-28573216 | None:intergenic | 55.0% | |
| GAGCTGTTTGCACCCCCTCA+GGG | + | chr7_4:28570700-28570719 | None:intergenic | 60.0% | |
| TGAGCTGTTTGCACCCCCTC+AGG | + | chr7_4:28570701-28570720 | None:intergenic | 60.0% | |
| AGAATTCGGAGGCTCGGCTC+GGG | + | chr7_4:28572301-28572320 | None:intergenic | 60.0% | |
| GAGAATTCGGAGGCTCGGCT+CGG | + | chr7_4:28572302-28572321 | None:intergenic | 60.0% | |
| AGCCGAGCCTCCGAATTCTC+AGG | - | chr7_4:28572302-28572321 | Msa1148490:intron | 60.0% | |
| GCCGAGCCTCCGAATTCTCA+GGG | - | chr7_4:28572303-28572322 | Msa1148490:intron | 60.0% | |
| !! | CGCCAACGCGGTTTTGATGC+TGG | - | chr7_4:28572408-28572427 | Msa1148490:CDS | 60.0% |
| !! | GGGATAATGGGCCTGCCTCT+AGG | + | chr7_4:28572619-28572638 | None:intergenic | 60.0% |
| TCCATTTGTGGGCACCCTCC+AGG | - | chr7_4:28573176-28573195 | Msa1148490:intron | 60.0% | |
| !! | TCCTGGAGGGTGCCCACAAA+TGG | + | chr7_4:28573180-28573199 | None:intergenic | 60.0% |
| GGGTTACTAGTGGCTCCTGG+AGG | + | chr7_4:28573194-28573213 | None:intergenic | 60.0% | |
| TGTTTGCACCCCCTCAGGGC+CGG | + | chr7_4:28570696-28570715 | None:intergenic | 65.0% | |
| TTGAGGCCCATCCTTGGGGG+AGG | + | chr7_4:28570735-28570754 | None:intergenic | 65.0% | |
| TAGCAGGGGACTCGCCGTCA+AGG | - | chr7_4:28573041-28573060 | Msa1148490:intron | 65.0% | |
| GTTTGCACCCCCTCAGGGCC+GGG | + | chr7_4:28570695-28570714 | None:intergenic | 70.0% | |
| AACGAGCTGGGCCTCCCCCA+AGG | - | chr7_4:28570721-28570740 | Msa1148490:intron | 70.0% | |
| AGCTGGGCCTCCCCCAAGGA+TGG | - | chr7_4:28570725-28570744 | Msa1148490:intron | 70.0% | |
| GCTGGGCCTCCCCCAAGGAT+GGG | - | chr7_4:28570726-28570745 | Msa1148490:intron | 70.0% | |
| TCTTCCCAGGCCCGGCCCTG+AGG | - | chr7_4:28570682-28570701 | Msa1148490:intron | 75.0% | |
| CTTCCCAGGCCCGGCCCTGA+GGG | - | chr7_4:28570683-28570702 | Msa1148490:intron | 75.0% | |
| TTCCCAGGCCCGGCCCTGAG+GGG | - | chr7_4:28570684-28570703 | Msa1148490:intron | 75.0% | |
| ! | TCCCAGGCCCGGCCCTGAGG+GGG | - | chr7_4:28570685-28570704 | Msa1148490:intron | 80.0% |
| ! | ACCCCCTCAGGGCCGGGCCT+GGG | + | chr7_4:28570689-28570708 | None:intergenic | 80.0% |
| ! | CACCCCCTCAGGGCCGGGCC+TGG | + | chr7_4:28570690-28570709 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 28570143 | 28573235 | 28570143 | ID=Msa1148490;Name=Msa1148490 |
| chr7_4 | mRNA | 28570143 | 28573235 | 28570143 | ID=Msa1148490-mRNA-1;Parent=Msa1148490;Name=Msa1148490-mRNA-1;_AED=0.67;_eAED=0.67;_QI=0|0|0|0.4|0|0.2|5|0|145 |
| chr7_4 | exon | 28573230 | 28573235 | 28573230 | ID=Msa1148490-mRNA-1:exon:7060;Parent=Msa1148490-mRNA-1 |
| chr7_4 | exon | 28572393 | 28572494 | 28572393 | ID=Msa1148490-mRNA-1:exon:7059;Parent=Msa1148490-mRNA-1 |
| chr7_4 | exon | 28571488 | 28571616 | 28571488 | ID=Msa1148490-mRNA-1:exon:7058;Parent=Msa1148490-mRNA-1 |
| chr7_4 | exon | 28570579 | 28570673 | 28570579 | ID=Msa1148490-mRNA-1:exon:7057;Parent=Msa1148490-mRNA-1 |
| chr7_4 | exon | 28570143 | 28570248 | 28570143 | ID=Msa1148490-mRNA-1:exon:7056;Parent=Msa1148490-mRNA-1 |
| chr7_4 | CDS | 28573230 | 28573235 | 28573230 | ID=Msa1148490-mRNA-1:cds;Parent=Msa1148490-mRNA-1 |
| chr7_4 | CDS | 28572393 | 28572494 | 28572393 | ID=Msa1148490-mRNA-1:cds;Parent=Msa1148490-mRNA-1 |
| chr7_4 | CDS | 28571488 | 28571616 | 28571488 | ID=Msa1148490-mRNA-1:cds;Parent=Msa1148490-mRNA-1 |
| chr7_4 | CDS | 28570579 | 28570673 | 28570579 | ID=Msa1148490-mRNA-1:cds;Parent=Msa1148490-mRNA-1 |
| chr7_4 | CDS | 28570143 | 28570248 | 28570143 | ID=Msa1148490-mRNA-1:cds;Parent=Msa1148490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
