Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149030 | XP_039683995.1 | 96.392 | 776 | 21 | 4 | 1 | 775 | 1 | 770 | 0.0 | 1550 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149030 | sp|Q01593|ABI3_ARATH | 46.718 | 777 | 284 | 27 | 19 | 762 | 32 | 711 | 3.86e-162 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149030 | A0A072U0Z8 | 96.392 | 776 | 21 | 4 | 1 | 775 | 1 | 770 | 0.0 | 1550 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1149030 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149030 | MtrunA17_Chr7g0237841 | 96.392 | 776 | 21 | 4 | 1 | 775 | 1 | 770 | 0.0 | 1550 |
| Msa1149030 | MtrunA17_Chr7g0251891 | 51.695 | 118 | 57 | 0 | 622 | 739 | 11 | 128 | 1.94e-34 | 130 |
| Msa1149030 | MtrunA17_Chr4g0047031 | 44.211 | 95 | 52 | 1 | 622 | 716 | 172 | 265 | 1.42e-19 | 91.3 |
| Msa1149030 | MtrunA17_Chr7g0244871 | 40.909 | 88 | 51 | 1 | 627 | 714 | 12 | 98 | 3.45e-18 | 80.5 |
| Msa1149030 | MtrunA17_Chr3g0107701 | 37.255 | 102 | 62 | 2 | 627 | 728 | 338 | 437 | 2.27e-16 | 84.0 |
| Msa1149030 | MtrunA17_Chr2g0281191 | 38.235 | 102 | 61 | 2 | 627 | 728 | 352 | 451 | 1.25e-15 | 81.3 |
| Msa1149030 | MtrunA17_Chr5g0432721 | 38.235 | 102 | 61 | 2 | 627 | 728 | 321 | 420 | 2.11e-15 | 80.5 |
| Msa1149030 | MtrunA17_Chr4g0012861 | 35.714 | 98 | 62 | 1 | 627 | 724 | 314 | 410 | 4.54e-15 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149030 | AT3G24650.1 | 46.718 | 777 | 284 | 27 | 19 | 762 | 32 | 711 | 3.92e-163 | 489 |
| Msa1149030 | AT3G26790.1 | 50.000 | 146 | 59 | 3 | 588 | 733 | 66 | 197 | 2.27e-38 | 145 |
| Msa1149030 | AT1G28300.1 | 50.413 | 121 | 59 | 1 | 622 | 741 | 165 | 285 | 1.55e-32 | 130 |
| Msa1149030 | AT2G30470.1 | 40.566 | 106 | 61 | 2 | 623 | 728 | 290 | 393 | 1.82e-17 | 87.8 |
| Msa1149030 | AT4G32010.1 | 37.755 | 98 | 60 | 1 | 627 | 724 | 285 | 381 | 6.72e-16 | 82.4 |
| Msa1149030 | AT4G32010.2 | 37.755 | 98 | 60 | 1 | 627 | 724 | 281 | 377 | 7.17e-16 | 82.4 |
| Msa1149030 | AT4G21550.2 | 37.255 | 102 | 60 | 3 | 627 | 728 | 327 | 424 | 1.31e-14 | 77.8 |
| Msa1149030 | AT4G21550.1 | 37.255 | 102 | 60 | 3 | 627 | 728 | 327 | 424 | 1.71e-14 | 77.8 |
| Msa1149030 | AT4G21550.3 | 37.255 | 102 | 60 | 3 | 627 | 728 | 327 | 424 | 2.03e-14 | 77.4 |
Find 160 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCTCATGGTATGAATTT+TGG | 0.145459 | 7_4:-29828408 | Msa1149030:CDS |
| CCATCTCTTGCCTCCAATTC+TGG | 0.191237 | 7_4:+29827284 | None:intergenic |
| GAAATTTAGCAGAAGAAAAT+TGG | 0.230877 | 7_4:-29829763 | Msa1149030:CDS |
| GAAACAGAACAAGTTGGTTT+TGG | 0.246821 | 7_4:-29829785 | Msa1149030:CDS |
| CATGGATGATGTTAACATTA+TGG | 0.261818 | 7_4:-29829315 | Msa1149030:CDS |
| TTCTTCCTCTGCAGCATCTT+GGG | 0.270856 | 7_4:-29829534 | Msa1149030:CDS |
| CAAAAGTGTTTGCTGTGTTT+TGG | 0.290697 | 7_4:+29828712 | None:intergenic |
| CTTCTTCCTCTGCAGCATCT+TGG | 0.298416 | 7_4:-29829535 | Msa1149030:CDS |
| TCACTATGAAATCTCCTTCT+TGG | 0.299122 | 7_4:+29826923 | None:intergenic |
| TTTGTCATCAACTGCTTCTA+TGG | 0.302150 | 7_4:-29829408 | Msa1149030:CDS |
| ACATTGGAACTTCTCGAGTT+TGG | 0.314913 | 7_4:-29827241 | Msa1149030:CDS |
| AATTCTTATCAGTTGTTTCC+TGG | 0.316637 | 7_4:-29828366 | Msa1149030:CDS |
| GAGTTTGGAATATGCGTTAC+AGG | 0.324294 | 7_4:-29827226 | Msa1149030:intron |
| AGTATTCAAGGAGATGAATT+AGG | 0.332563 | 7_4:-29829038 | Msa1149030:CDS |
| AGAAACACATTTGCCAGAAT+TGG | 0.333835 | 7_4:-29827297 | Msa1149030:CDS |
| TTCGTGTGTGATGGTGTAAA+TGG | 0.334610 | 7_4:-29829068 | Msa1149030:CDS |
| GTTAACATTATGGATACTTT+TGG | 0.334842 | 7_4:-29829305 | Msa1149030:CDS |
| TGTTTCCTGGTCCTGGTGAT+AGG | 0.335577 | 7_4:-29828353 | Msa1149030:CDS |
| TTCCTTGGCACCTGTTGTTC+CGG | 0.343972 | 7_4:-29828091 | Msa1149030:CDS |
| TATCAGTTGTTTCCTGGTCC+TGG | 0.347158 | 7_4:-29828360 | Msa1149030:CDS |
| TGTTGAAGCTTATTCTTGAA+TGG | 0.366685 | 7_4:-29828848 | Msa1149030:CDS |
| GCAAAGTGATGTGGGAAGTC+TGG | 0.373169 | 7_4:-29827437 | Msa1149030:CDS |
| TGATGAAGAAAACCCTTTAG+TGG | 0.375000 | 7_4:-29829225 | Msa1149030:CDS |
| TGGTGGGACAGCAGCTTCCT+TGG | 0.379291 | 7_4:-29828106 | Msa1149030:CDS |
| TCTGCAGGGTGGGGCGGTCA+CGG | 0.383655 | 7_4:+29828043 | None:intergenic |
| TCGTGTGTGATGGTGTAAAT+GGG | 0.396277 | 7_4:-29829067 | Msa1149030:CDS |
| ACAAATGATTGATTGTAGTT+TGG | 0.399774 | 7_4:+29828453 | None:intergenic |
| TCTGATCCACTTGCGAGATT+AGG | 0.400014 | 7_4:-29828210 | Msa1149030:CDS |
| TTTGATCTAACCATGATGTT+TGG | 0.403522 | 7_4:+29828664 | None:intergenic |
| GAAACAGAACCATTTGTGTA+AGG | 0.406123 | 7_4:+29828570 | None:intergenic |
| GGTGAGAACTCTGTGTCTGC+AGG | 0.408549 | 7_4:+29828028 | None:intergenic |
| GAACTCTGTGTCTGCAGGGT+GGG | 0.414584 | 7_4:+29828033 | None:intergenic |
| TGTTGGAATCAAATCATTCA+TGG | 0.419898 | 7_4:-29828500 | Msa1149030:CDS |
| TCGAATAATGATGTTGTTGT+TGG | 0.421700 | 7_4:-29829350 | Msa1149030:CDS |
| GTTGAAGCTTATTCTTGAAT+GGG | 0.421780 | 7_4:-29828847 | Msa1149030:CDS |
| CTCATGCAAATCCAGGTAAC+TGG | 0.422437 | 7_4:-29828149 | Msa1149030:CDS |
| CTTGAGGTTCCTTCTACAAA+AGG | 0.425157 | 7_4:-29827467 | Msa1149030:CDS |
| AACCTTGAATATTCTGATGA+TGG | 0.426625 | 7_4:+29828232 | None:intergenic |
| GATGACATGCATGGAAAATC+AGG | 0.429831 | 7_4:+29829647 | None:intergenic |
| CAAAAGCAGGATGTATTTGC+TGG | 0.433484 | 7_4:-29827068 | Msa1149030:CDS |
| CAAAGTGATGTGGGAAGTCT+GGG | 0.435116 | 7_4:-29827436 | Msa1149030:CDS |
| AACTCTGTGTCTGCAGGGTG+GGG | 0.436581 | 7_4:+29828034 | None:intergenic |
| TGTTGGTGGTGGTGATTGCA+TGG | 0.439533 | 7_4:-29829333 | Msa1149030:CDS |
| AACCATCATCAGAATATTCA+AGG | 0.441107 | 7_4:-29828234 | Msa1149030:CDS |
| AGATTAGGTGGTGGAAAAGA+AGG | 0.441852 | 7_4:-29828882 | Msa1149030:CDS |
| GAAAGTGCTGCTAAGAGATT+AGG | 0.444298 | 7_4:-29828897 | Msa1149030:CDS |
| GTTGCTGATCCTTACACAAA+TGG | 0.448875 | 7_4:-29828579 | Msa1149030:CDS |
| ATCCAGGTAACTGGATGTAT+TGG | 0.449670 | 7_4:-29828140 | Msa1149030:CDS |
| CTTGTGTGAAATCCACTAAA+GGG | 0.453109 | 7_4:+29829213 | None:intergenic |
| CCAATGGTTGGAGTTGGAGT+TGG | 0.454100 | 7_4:-29828606 | Msa1149030:CDS |
| CTAGTCATCTTCAAAACAAA+AGG | 0.455119 | 7_4:-29828818 | Msa1149030:CDS |
| GGAGGCTGCGTCGGCTCGGC+CGG | 0.455345 | 7_4:+29828072 | None:intergenic |
| GCAGTTGATGACAAAGTTGT+TGG | 0.458355 | 7_4:+29829416 | None:intergenic |
| TTAGATCTTGTTATGGAGTG+TGG | 0.458680 | 7_4:-29829836 | None:intergenic |
| TGTTGAGGAACAAGATTTGA+AGG | 0.459544 | 7_4:+29828762 | None:intergenic |
| TTGCTGCATTATTCCCATGC+TGG | 0.461065 | 7_4:+29826370 | None:intergenic |
| CAACAACAGCAACAAGATCT+TGG | 0.467069 | 7_4:-29829377 | Msa1149030:CDS |
| TTAGTAGCAGCAGGTTGGTA+AGG | 0.468267 | 7_4:+29828534 | None:intergenic |
| GGAACTGCAGTGGATAATAA+TGG | 0.468390 | 7_4:-29826339 | Msa1149030:CDS |
| CACAGGAGGCTGCGTCGGCT+CGG | 0.469916 | 7_4:+29828068 | None:intergenic |
| AGATGCTGAGGAAGAAGAAG+AGG | 0.470142 | 7_4:+29829556 | None:intergenic |
| GGCGGTTCATGTCTCATCAT+AGG | 0.470887 | 7_4:-29828269 | Msa1149030:CDS |
| AATGGGGAAGAGAGTATTCA+AGG | 0.474011 | 7_4:-29829050 | Msa1149030:CDS |
| AATGATGTTGTTGTTGGTGG+TGG | 0.475401 | 7_4:-29829344 | Msa1149030:CDS |
| TGTAAGTGATGAAATGAGTA+TGG | 0.477564 | 7_4:-29829003 | Msa1149030:CDS |
| AATAATGATGTTGTTGTTGG+TGG | 0.478444 | 7_4:-29829347 | Msa1149030:CDS |
| GGTGATAGGTTGATGAGGTT+AGG | 0.481801 | 7_4:-29828339 | Msa1149030:CDS |
| GGTGACTTTGTGAAAGCTAA+TGG | 0.483912 | 7_4:-29826949 | Msa1149030:CDS |
| AACACATTTGCCAGAATTGG+AGG | 0.485525 | 7_4:-29827294 | Msa1149030:CDS |
| TCCTCGATATTCACTTGTTG+CGG | 0.491769 | 7_4:+29829107 | None:intergenic |
| TGATATTCATTAGTAGCAGC+AGG | 0.496130 | 7_4:+29828525 | None:intergenic |
| TCCACAAACCTGTCTCCTAT+CGG | 0.498147 | 7_4:+29827990 | None:intergenic |
| CCACAAACCTGTCTCCTATC+GGG | 0.499467 | 7_4:+29827991 | None:intergenic |
| AAACTACAATCAATCATTTG+TGG | 0.501306 | 7_4:-29828451 | Msa1149030:CDS |
| TCTTGTGTGAAATCCACTAA+AGG | 0.501764 | 7_4:+29829212 | None:intergenic |
| TCACAACCAATGGTTGGAGT+TGG | 0.514632 | 7_4:-29828612 | Msa1149030:CDS |
| GGCCGGAACAACAGGTGCCA+AGG | 0.516233 | 7_4:+29828089 | None:intergenic |
| CCAGAATTGGAGGCAAGAGA+TGG | 0.521085 | 7_4:-29827284 | Msa1149030:CDS |
| TCGATTACAATGGAAGACAT+TGG | 0.521875 | 7_4:-29827257 | Msa1149030:CDS |
| TGCCAATACATCCAGTTACC+TGG | 0.522443 | 7_4:+29828138 | None:intergenic |
| TTTAGATCTGCATGCAAAGT+TGG | 0.524550 | 7_4:-29829813 | Msa1149030:CDS |
| GTGTCTCGGCGAATGATTTG+AGG | 0.525939 | 7_4:-29828947 | Msa1149030:CDS |
| CATGTATTAGATTATCATCA+TGG | 0.526970 | 7_4:-29829446 | Msa1149030:CDS |
| AGAACTCTGTGTCTGCAGGG+TGG | 0.529491 | 7_4:+29828032 | None:intergenic |
| GATTAGGTGGTGGAAAAGAA+GGG | 0.531409 | 7_4:-29828881 | Msa1149030:CDS |
| TTGAAACACGCGTTCGACTC+AGG | 0.532743 | 7_4:+29828687 | None:intergenic |
| AATAATGCAGCAAATTCAGC+TGG | 0.533401 | 7_4:-29826360 | Msa1149030:CDS |
| GTTGGAATCAAATCATTCAT+GGG | 0.534566 | 7_4:-29828499 | Msa1149030:CDS |
| TGCACCAATGTTGCTGCTGG+TGG | 0.534906 | 7_4:-29828174 | Msa1149030:CDS |
| GATCCACTTGCGAGATTAGG+TGG | 0.536385 | 7_4:-29828207 | Msa1149030:CDS |
| AGAAGAGGATGGCTCGGCAA+CGG | 0.537506 | 7_4:-29828290 | Msa1149030:CDS |
| AAGTGCACCCGATAGGAGAC+AGG | 0.539885 | 7_4:-29827998 | Msa1149030:intron |
| GTGAATGAAACAGAACAAGT+TGG | 0.541250 | 7_4:-29829791 | Msa1149030:CDS |
| AGGTATTATTGTGTTAATGT+TGG | 0.545897 | 7_4:+29828782 | None:intergenic |
| GGTGGTTCTCATGCAAATCC+AGG | 0.547601 | 7_4:-29828156 | Msa1149030:CDS |
| TCTGTGTCTGCAGGGTGGGG+CGG | 0.552994 | 7_4:+29828037 | None:intergenic |
| GTGAGAACTCTGTGTCTGCA+GGG | 0.554437 | 7_4:+29828029 | None:intergenic |
| ATGCATGGAAAATCAGGTAA+AGG | 0.554838 | 7_4:+29829653 | None:intergenic |
| CGTGTTTCAACCAAACATCA+TGG | 0.556011 | 7_4:-29828674 | Msa1149030:CDS |
| TAGTAGCAGCAGGTTGGTAA+GGG | 0.556194 | 7_4:+29828535 | None:intergenic |
| ATTGGTTGTGAAAATTGTTG+TGG | 0.556322 | 7_4:+29828624 | None:intergenic |
| GCAGACACAGAGTTCTCACC+AGG | 0.557068 | 7_4:-29828025 | Msa1149030:CDS |
| ATTGGCCAAACAACAAAAGC+AGG | 0.559048 | 7_4:-29827081 | Msa1149030:CDS |
| TTTGTGATACAGATGATAAG+AGG | 0.559171 | 7_4:-29826459 | Msa1149030:intron |
| AACAATGTGCTACAACCTCA+TGG | 0.560848 | 7_4:-29828420 | Msa1149030:CDS |
| CGGTCCACAGGAGGCTGCGT+CGG | 0.567206 | 7_4:+29828063 | None:intergenic |
| CAAAAGAAGCTAGAAAGAAG+AGG | 0.568012 | 7_4:-29828305 | Msa1149030:CDS |
| ATCTAACAAAGATAGTGTCT+CGG | 0.568134 | 7_4:-29828961 | Msa1149030:CDS |
| GCAACAAGTTCAAGTGCAAG+AGG | 0.568536 | 7_4:-29829189 | Msa1149030:CDS |
| CTATCATCATGCACTATCAT+CGG | 0.568658 | 7_4:+29829140 | None:intergenic |
| AGATGGAATTTCGATTACAA+TGG | 0.569089 | 7_4:-29827267 | Msa1149030:CDS |
| AAAGCTAATGGTCTCCAAGA+AGG | 0.570893 | 7_4:-29826937 | Msa1149030:CDS |
| TCTTGAAACTGTTGTTGTTG+AGG | 0.572652 | 7_4:+29828747 | None:intergenic |
| ATGTATTGGCAGACTATGAC+TGG | 0.575203 | 7_4:-29828126 | Msa1149030:CDS |
| CAACAAGTTCAAGTGCAAGA+GGG | 0.577061 | 7_4:-29829188 | Msa1149030:CDS |
| CTAGAAAGAAGAGGATGGCT+CGG | 0.580461 | 7_4:-29828296 | Msa1149030:CDS |
| AGAACCACCAGCAGCAACAT+TGG | 0.585844 | 7_4:+29828170 | None:intergenic |
| AATACTACAAATGATCAAGA+TGG | 0.586104 | 7_4:-29829734 | Msa1149030:CDS |
| AATTGCACCAATGTTGCTGC+TGG | 0.589434 | 7_4:-29828177 | Msa1149030:CDS |
| TGCAGAGGAAGAAGATGCTG+AGG | 0.590449 | 7_4:+29829544 | None:intergenic |
| CCAACTCCAACTCCAACCAT+TGG | 0.593836 | 7_4:+29828606 | None:intergenic |
| CCACCACCTAATCTCGCAAG+TGG | 0.597223 | 7_4:+29828204 | None:intergenic |
| ATTCATTAGTAGCAGCAGGT+TGG | 0.599869 | 7_4:+29828529 | None:intergenic |
| AACAGCCCAAGATGCTGCAG+AGG | 0.599950 | 7_4:+29829529 | None:intergenic |
| TACTAATGAATATCACATGT+TGG | 0.601457 | 7_4:-29828517 | Msa1149030:CDS |
| CATGGAAAATCAGGTAAAGG+AGG | 0.601465 | 7_4:+29829656 | None:intergenic |
| AACCTCATCAACCTATCACC+AGG | 0.601661 | 7_4:+29828342 | None:intergenic |
| GATGTTGAAGTAGATCATCA+AGG | 0.604610 | 7_4:-29829497 | Msa1149030:CDS |
| GGAAGCCTGAAAAGAACTTG+AGG | 0.606267 | 7_4:-29827483 | Msa1149030:CDS |
| GTTGATGACAAAGTTGTTGG+AGG | 0.610564 | 7_4:+29829419 | None:intergenic |
| AGAAGCTAGAAAGAAGAGGA+TGG | 0.610747 | 7_4:-29828301 | Msa1149030:CDS |
| AGGGTCGAAGTGCACCCGAT+AGG | 0.612569 | 7_4:-29828005 | Msa1149030:CDS |
| AACAAGTTCAAGTGCAAGAG+GGG | 0.612587 | 7_4:-29829187 | Msa1149030:CDS |
| CGTGTGTGATGGTGTAAATG+GGG | 0.613786 | 7_4:-29829066 | Msa1149030:CDS |
| AGAGGATGGCTCGGCAACGG+CGG | 0.616260 | 7_4:-29828287 | Msa1149030:CDS |
| GGTTGTGAAAATTGTTGTGG+AGG | 0.618026 | 7_4:+29828627 | None:intergenic |
| TGTAGTTGAAGTACATGCAA+TGG | 0.622529 | 7_4:+29829586 | None:intergenic |
| CGAGCCGACGCAGCCTCCTG+TGG | 0.623393 | 7_4:-29828067 | Msa1149030:CDS |
| ATCAACCTATCACCAGGACC+AGG | 0.632824 | 7_4:+29828348 | None:intergenic |
| GAGGATGATGATGACATGCA+TGG | 0.637958 | 7_4:+29829638 | None:intergenic |
| TGTTGAAGATGATGAAGATG+AGG | 0.638543 | 7_4:+29829619 | None:intergenic |
| TGTTGTGGAGGTACAATGAG+AGG | 0.642005 | 7_4:+29828639 | None:intergenic |
| TGATAAGAGGAGTTAAAGTG+AGG | 0.643871 | 7_4:-29826446 | Msa1149030:CDS |
| ACAACAAGGAACAAAACCAG+AGG | 0.652056 | 7_4:-29826421 | Msa1149030:CDS |
| AAATTCAGCTGGAACTGCAG+TGG | 0.653260 | 7_4:-29826349 | Msa1149030:CDS |
| ATGTATTTGCTGGAGAACAC+TGG | 0.655741 | 7_4:-29827058 | Msa1149030:intron |
| GTCCTGGTGATAGGTTGATG+AGG | 0.656286 | 7_4:-29828344 | Msa1149030:CDS |
| GCTGCTAAGAGATTAGGTGG+TGG | 0.661001 | 7_4:-29828891 | Msa1149030:CDS |
| CCTCCAAAATTCATACCATG+AGG | 0.677157 | 7_4:+29828405 | None:intergenic |
| TTGGAATCAAATCATTCATG+GGG | 0.679978 | 7_4:-29828498 | Msa1149030:CDS |
| GATGAATTAGGTGCATGTGA+TGG | 0.687203 | 7_4:-29829026 | Msa1149030:CDS |
| ATTGGCAGACTATGACTGGT+GGG | 0.691493 | 7_4:-29828122 | Msa1149030:CDS |
| AGTGCTGCTAAGAGATTAGG+TGG | 0.692120 | 7_4:-29828894 | Msa1149030:CDS |
| GTTAAAGTGAGGCAACAACA+AGG | 0.696223 | 7_4:-29826435 | Msa1149030:CDS |
| TATTGGCAGACTATGACTGG+TGG | 0.706224 | 7_4:-29828123 | Msa1149030:CDS |
| CCACTTGCGAGATTAGGTGG+TGG | 0.706417 | 7_4:-29828204 | Msa1149030:CDS |
| ACCGCAACAAGTGAATATCG+AGG | 0.707077 | 7_4:-29829108 | Msa1149030:CDS |
| ATATATTCTGATGTGAAGTG+TGG | 0.723007 | 7_4:-29826901 | Msa1149030:CDS |
| AAAGTGATGTGGGAAGTCTG+GGG | 0.734540 | 7_4:-29827435 | Msa1149030:CDS |
| CAGACACAGAGTTCTCACCA+GGG | 0.785474 | 7_4:-29828024 | Msa1149030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAATTATAAGAGA+AGG | + | chr7_4:29829271-29829290 | None:intergenic | 10.0% |
| !!! | TTTTTTCACTTATATTTTTA+TGG | - | chr7_4:29829287-29829306 | Msa1149030:CDS | 10.0% |
| !!! | AGAAAATCAATAATTACTTT+TGG | + | chr7_4:29828735-29828754 | None:intergenic | 15.0% |
| !! | AGAATGTAAAATATGAAAAT+CGG | + | chr7_4:29829440-29829459 | None:intergenic | 15.0% |
| !! | AAAATTTGAGAATTAATTAG+TGG | - | chr7_4:29829642-29829661 | Msa1149030:CDS | 15.0% |
| !! | AAATTTGAGAATTAATTAGT+GGG | - | chr7_4:29829643-29829662 | Msa1149030:CDS | 15.0% |
| !!! | TATATTCCTTTTCATTTTGT+AGG | - | chr7_4:29829162-29829181 | Msa1149030:CDS | 20.0% |
| !!! | CACTTATATTTTTATGGATT+TGG | - | chr7_4:29829293-29829312 | Msa1149030:CDS | 20.0% |
| !!! | TAGTCTGGTTTATAAAAATT+CGG | + | chr7_4:29829356-29829375 | None:intergenic | 20.0% |
| ! | GAAATTTAGCAGAAGAAAAT+TGG | - | chr7_4:29826369-29826388 | Msa1149030:CDS | 25.0% |
| ! | AATACTACAAATGATCAAGA+TGG | - | chr7_4:29826398-29826417 | Msa1149030:CDS | 25.0% |
| ! | AGTAACATGCATCAAAAAAA+TGG | - | chr7_4:29826662-29826681 | Msa1149030:intron | 25.0% |
| ! | CATGTATTAGATTATCATCA+TGG | - | chr7_4:29826686-29826705 | Msa1149030:intron | 25.0% |
| !! | GTTAACATTATGGATACTTT+TGG | - | chr7_4:29826827-29826846 | Msa1149030:intron | 25.0% |
| ! | AGGTATTATTGTGTTAATGT+TGG | + | chr7_4:29827353-29827372 | None:intergenic | 25.0% |
| ! | TACTAATGAATATCACATGT+TGG | - | chr7_4:29827615-29827634 | Msa1149030:intron | 25.0% |
| ! | ACAAATGATTGATTGTAGTT+TGG | + | chr7_4:29827682-29827701 | None:intergenic | 25.0% |
| ! | AAACTACAATCAATCATTTG+TGG | - | chr7_4:29827681-29827700 | Msa1149030:intron | 25.0% |
| !! | GTCACACATTTTTAATAATC+TGG | + | chr7_4:29828570-29828589 | None:intergenic | 25.0% |
| ! | TGTTGATGTATTTGATTGAT+AGG | - | chr7_4:29828623-29828642 | Msa1149030:CDS | 25.0% |
| ! | GTTGATGTATTTGATTGATA+GGG | - | chr7_4:29828624-29828643 | Msa1149030:CDS | 25.0% |
| !!! | TCTTTTCGATTATTTCTTCT+TGG | - | chr7_4:29829018-29829037 | Msa1149030:CDS | 25.0% |
| ! | GAGTTATTCTTCTTATTCAT+TGG | - | chr7_4:29829098-29829117 | Msa1149030:CDS | 25.0% |
| !!! | TTATTCATTGGTCTTTTTGT+AGG | - | chr7_4:29829110-29829129 | Msa1149030:CDS | 25.0% |
| ! | TCACAATTCAATTAGTTGAT+CGG | + | chr7_4:29829387-29829406 | None:intergenic | 25.0% |
| !! | TTTTACTGTTGCAATTTAGA+CGG | + | chr7_4:29829588-29829607 | None:intergenic | 25.0% |
| TCGAATAATGATGTTGTTGT+TGG | - | chr7_4:29826782-29826801 | Msa1149030:intron | 30.0% | |
| ! | AATAATGATGTTGTTGTTGG+TGG | - | chr7_4:29826785-29826804 | Msa1149030:intron | 30.0% |
| CATGGATGATGTTAACATTA+TGG | - | chr7_4:29826817-29826836 | Msa1149030:intron | 30.0% | |
| !! | TATGGATACTTTTGGTTACA+TGG | - | chr7_4:29826835-29826854 | Msa1149030:intron | 30.0% |
| !! | CATTTTGAAAAATCGAAGCA+GGG | + | chr7_4:29826889-29826908 | None:intergenic | 30.0% |
| !! | TCATTTTGAAAAATCGAAGC+AGG | + | chr7_4:29826890-29826909 | None:intergenic | 30.0% |
| AGTATTCAAGGAGATGAATT+AGG | - | chr7_4:29827094-29827113 | Msa1149030:intron | 30.0% | |
| TGTAAGTGATGAAATGAGTA+TGG | - | chr7_4:29827129-29827148 | Msa1149030:intron | 30.0% | |
| ! | TGAAATGAGTATGGTTTTCT+TGG | - | chr7_4:29827138-29827157 | Msa1149030:intron | 30.0% |
| ATCTAACAAAGATAGTGTCT+CGG | - | chr7_4:29827171-29827190 | Msa1149030:intron | 30.0% | |
| TGTTGAAGCTTATTCTTGAA+TGG | - | chr7_4:29827284-29827303 | Msa1149030:CDS | 30.0% | |
| GTTGAAGCTTATTCTTGAAT+GGG | - | chr7_4:29827285-29827304 | Msa1149030:CDS | 30.0% | |
| CTAGTCATCTTCAAAACAAA+AGG | - | chr7_4:29827314-29827333 | Msa1149030:intron | 30.0% | |
| TTTGATCTAACCATGATGTT+TGG | + | chr7_4:29827471-29827490 | None:intergenic | 30.0% | |
| ATTGGTTGTGAAAATTGTTG+TGG | + | chr7_4:29827511-29827530 | None:intergenic | 30.0% | |
| ! | ACAACAATTTTCACAACCAA+TGG | - | chr7_4:29827510-29827529 | Msa1149030:intron | 30.0% |
| TGTTGGAATCAAATCATTCA+TGG | - | chr7_4:29827632-29827651 | Msa1149030:intron | 30.0% | |
| GTTGGAATCAAATCATTCAT+GGG | - | chr7_4:29827633-29827652 | Msa1149030:intron | 30.0% | |
| TTGGAATCAAATCATTCATG+GGG | - | chr7_4:29827634-29827653 | Msa1149030:intron | 30.0% | |
| ! | AATTCTTATCAGTTGTTTCC+TGG | - | chr7_4:29827766-29827785 | Msa1149030:intron | 30.0% |
| AACCATCATCAGAATATTCA+AGG | - | chr7_4:29827898-29827917 | Msa1149030:intron | 30.0% | |
| AACCTTGAATATTCTGATGA+TGG | + | chr7_4:29827903-29827922 | None:intergenic | 30.0% | |
| !!! | CTGCAATATAATGGTTTTAG+AGG | - | chr7_4:29828322-29828341 | Msa1149030:CDS | 30.0% |
| GATAAATATGACCACAATTG+TGG | + | chr7_4:29828368-29828387 | None:intergenic | 30.0% | |
| CATATTTATCCATTTGTCTG+CGG | - | chr7_4:29828378-29828397 | Msa1149030:CDS | 30.0% | |
| CATTATTGTAACCACAATTG+TGG | - | chr7_4:29828425-29828444 | Msa1149030:CDS | 30.0% | |
| GATAAATATGACCACAATTG+TGG | + | chr7_4:29828368-29828387 | None:intergenic | 30.0% | |
| CATATTTATCCATTTGTCTG+CGG | - | chr7_4:29828378-29828397 | Msa1149030:CDS | 30.0% | |
| ATAATTGATCGATCGGATAA+TGG | + | chr7_4:29828542-29828561 | None:intergenic | 30.0% | |
| GGCAATTATAATTGATCGAT+CGG | + | chr7_4:29828549-29828568 | None:intergenic | 30.0% | |
| ATGTATTTGATTGATAGGGT+TGG | - | chr7_4:29828628-29828647 | Msa1149030:CDS | 30.0% | |
| ATTGCAAAAACATCAGAAAG+AGG | - | chr7_4:29828811-29828830 | Msa1149030:CDS | 30.0% | |
| AGATGGAATTTCGATTACAA+TGG | - | chr7_4:29828865-29828884 | Msa1149030:CDS | 30.0% | |
| ! | TACAGGTAAGCAAATTTTCA+TGG | - | chr7_4:29828923-29828942 | Msa1149030:CDS | 30.0% |
| AAGTCACCTACAAAATGAAA+AGG | + | chr7_4:29829171-29829190 | None:intergenic | 30.0% | |
| ATATATTCTGATGTGAAGTG+TGG | - | chr7_4:29829231-29829250 | Msa1149030:CDS | 30.0% | |
| CACAATTCAATTAGTTGATC+GGG | + | chr7_4:29829386-29829405 | None:intergenic | 30.0% | |
| TTTGTGATACAGATGATAAG+AGG | - | chr7_4:29829673-29829692 | Msa1149030:CDS | 30.0% | |
| TTTAGATCTGCATGCAAAGT+TGG | - | chr7_4:29826319-29826338 | Msa1149030:CDS | 35.0% | |
| GTGAATGAAACAGAACAAGT+TGG | - | chr7_4:29826341-29826360 | Msa1149030:CDS | 35.0% | |
| !!! | GAAACAGAACAAGTTGGTTT+TGG | - | chr7_4:29826347-29826366 | Msa1149030:CDS | 35.0% |
| ! | GATCAAGATGGTGATCTTTT+AGG | - | chr7_4:29826410-29826429 | Msa1149030:CDS | 35.0% |
| ATGCATGGAAAATCAGGTAA+AGG | + | chr7_4:29826482-29826501 | None:intergenic | 35.0% | |
| TGTTGAAGATGATGAAGATG+AGG | + | chr7_4:29826516-29826535 | None:intergenic | 35.0% | |
| ! | GTACATGCAATGGTTTTCAA+TGG | + | chr7_4:29826539-29826558 | None:intergenic | 35.0% |
| TGTAGTTGAAGTACATGCAA+TGG | + | chr7_4:29826549-29826568 | None:intergenic | 35.0% | |
| GATGTTGAAGTAGATCATCA+AGG | - | chr7_4:29826635-29826654 | Msa1149030:intron | 35.0% | |
| TTTGTCATCAACTGCTTCTA+TGG | - | chr7_4:29826724-29826743 | Msa1149030:intron | 35.0% | |
| TGATGAAGAAAACCCTTTAG+TGG | - | chr7_4:29826907-29826926 | Msa1149030:CDS | 35.0% | |
| CTTGTGTGAAATCCACTAAA+GGG | + | chr7_4:29826922-29826941 | None:intergenic | 35.0% | |
| TCTTGTGTGAAATCCACTAA+AGG | + | chr7_4:29826923-29826942 | None:intergenic | 35.0% | |
| CTATCATCATGCACTATCAT+CGG | + | chr7_4:29826995-29827014 | None:intergenic | 35.0% | |
| TGTTGAGGAACAAGATTTGA+AGG | + | chr7_4:29827373-29827392 | None:intergenic | 35.0% | |
| ! | TCTTGAAACTGTTGTTGTTG+AGG | + | chr7_4:29827388-29827407 | None:intergenic | 35.0% |
| !!! | CAAAAGTGTTTGCTGTGTTT+TGG | + | chr7_4:29827423-29827442 | None:intergenic | 35.0% |
| ! | CAATTTTCACAACCAATGGT+TGG | - | chr7_4:29827514-29827533 | Msa1149030:intron | 35.0% |
| GAAACAGAACCATTTGTGTA+AGG | + | chr7_4:29827565-29827584 | None:intergenic | 35.0% | |
| TGATATTCATTAGTAGCAGC+AGG | + | chr7_4:29827610-29827629 | None:intergenic | 35.0% | |
| ! | CAACCTCATGGTATGAATTT+TGG | - | chr7_4:29827724-29827743 | Msa1149030:intron | 35.0% |
| !! | GGTATGAATTTTGGAGGTTA+TGG | - | chr7_4:29827733-29827752 | Msa1149030:intron | 35.0% |
| CAAAAGAAGCTAGAAAGAAG+AGG | - | chr7_4:29827827-29827846 | Msa1149030:intron | 35.0% | |
| TTATATTGCAGCCACAATTG+CGG | + | chr7_4:29828313-29828332 | None:intergenic | 35.0% | |
| CAATTGTGGCTGCAATATAA+TGG | - | chr7_4:29828313-29828332 | Msa1149030:CDS | 35.0% | |
| ! | GCTTCAAAACCTTTTGTAGA+AGG | + | chr7_4:29828677-29828696 | None:intergenic | 35.0% |
| !!! | GTTTTGAAGCAAAGTGATGT+GGG | - | chr7_4:29828687-29828706 | Msa1149030:CDS | 35.0% |
| AGAAACACATTTGCCAGAAT+TGG | - | chr7_4:29828835-29828854 | Msa1149030:CDS | 35.0% | |
| TCGATTACAATGGAAGACAT+TGG | - | chr7_4:29828875-29828894 | Msa1149030:CDS | 35.0% | |
| !!! | TACATCCTGCTTTTGTTGTT+TGG | + | chr7_4:29829059-29829078 | None:intergenic | 35.0% |
| TCACTATGAAATCTCCTTCT+TGG | + | chr7_4:29829212-29829231 | None:intergenic | 35.0% | |
| GATCTCAATTCAATTGTGTG+GGG | + | chr7_4:29829330-29829349 | None:intergenic | 35.0% | |
| CGATCTCAATTCAATTGTGT+GGG | + | chr7_4:29829331-29829350 | None:intergenic | 35.0% | |
| TCGATCTCAATTCAATTGTG+TGG | + | chr7_4:29829332-29829351 | None:intergenic | 35.0% | |
| TGATAAGAGGAGTTAAAGTG+AGG | - | chr7_4:29829686-29829705 | Msa1149030:CDS | 35.0% | |
| AAATCACAGAAAAACCAGCA+TGG | - | chr7_4:29829748-29829767 | Msa1149030:CDS | 35.0% | |
| AATCACAGAAAAACCAGCAT+GGG | - | chr7_4:29829749-29829768 | Msa1149030:CDS | 35.0% | |
| AATAATGCAGCAAATTCAGC+TGG | - | chr7_4:29829772-29829791 | Msa1149030:CDS | 35.0% | |
| !!! | TTTTTTCGCTTTGGTGAAGA+TGG | + | chr7_4:29829823-29829842 | None:intergenic | 35.0% |
| CATGGAAAATCAGGTAAAGG+AGG | + | chr7_4:29826479-29826498 | None:intergenic | 40.0% | |
| GATGACATGCATGGAAAATC+AGG | + | chr7_4:29826488-29826507 | None:intergenic | 40.0% | |
| !! | GTTGATGACAAAGTTGTTGG+AGG | + | chr7_4:29826716-29826735 | None:intergenic | 40.0% |
| !! | GCAGTTGATGACAAAGTTGT+TGG | + | chr7_4:29826719-29826738 | None:intergenic | 40.0% |
| CAACAACAGCAACAAGATCT+TGG | - | chr7_4:29826755-29826774 | Msa1149030:intron | 40.0% | |
| ! | AATGATGTTGTTGTTGGTGG+TGG | - | chr7_4:29826788-29826807 | Msa1149030:intron | 40.0% |
| CAACAAGTTCAAGTGCAAGA+GGG | - | chr7_4:29826944-29826963 | Msa1149030:CDS | 40.0% | |
| AACAAGTTCAAGTGCAAGAG+GGG | - | chr7_4:29826945-29826964 | Msa1149030:CDS | 40.0% | |
| ! | TCCTCGATATTCACTTGTTG+CGG | + | chr7_4:29827028-29827047 | None:intergenic | 40.0% |
| ! | TTCGTGTGTGATGGTGTAAA+TGG | - | chr7_4:29827064-29827083 | Msa1149030:CDS | 40.0% |
| ! | TCGTGTGTGATGGTGTAAAT+GGG | - | chr7_4:29827065-29827084 | Msa1149030:CDS | 40.0% |
| !! | AATGGGGAAGAGAGTATTCA+AGG | - | chr7_4:29827082-29827101 | Msa1149030:CDS | 40.0% |
| GATGAATTAGGTGCATGTGA+TGG | - | chr7_4:29827106-29827125 | Msa1149030:intron | 40.0% | |
| ! | TGAGTATGGTTTTCTTGGAG+TGG | - | chr7_4:29827143-29827162 | Msa1149030:intron | 40.0% |
| !! | GAAAGTGCTGCTAAGAGATT+AGG | - | chr7_4:29827235-29827254 | Msa1149030:CDS | 40.0% |
| !! | AGATTAGGTGGTGGAAAAGA+AGG | - | chr7_4:29827250-29827269 | Msa1149030:CDS | 40.0% |
| !! | GATTAGGTGGTGGAAAAGAA+GGG | - | chr7_4:29827251-29827270 | Msa1149030:CDS | 40.0% |
| CGTGTTTCAACCAAACATCA+TGG | - | chr7_4:29827458-29827477 | Msa1149030:CDS | 40.0% | |
| GGTTGTGAAAATTGTTGTGG+AGG | + | chr7_4:29827508-29827527 | None:intergenic | 40.0% | |
| GTTGCTGATCCTTACACAAA+TGG | - | chr7_4:29827553-29827572 | Msa1149030:intron | 40.0% | |
| ATTCATTAGTAGCAGCAGGT+TGG | + | chr7_4:29827606-29827625 | None:intergenic | 40.0% | |
| AACAATGTGCTACAACCTCA+TGG | - | chr7_4:29827712-29827731 | Msa1149030:intron | 40.0% | |
| CCTCCAAAATTCATACCATG+AGG | + | chr7_4:29827730-29827749 | None:intergenic | 40.0% | |
| ! | CCTCATGGTATGAATTTTGG+AGG | - | chr7_4:29827727-29827746 | Msa1149030:intron | 40.0% |
| ! | CTAGCTTCTTTTGTAGCAGA+AGG | + | chr7_4:29827820-29827839 | None:intergenic | 40.0% |
| AGAAGCTAGAAAGAAGAGGA+TGG | - | chr7_4:29827831-29827850 | Msa1149030:intron | 40.0% | |
| ATCCAGGTAACTGGATGTAT+TGG | - | chr7_4:29827992-29828011 | Msa1149030:intron | 40.0% | |
| ! | ATGTATTGGCAGACTATGAC+TGG | - | chr7_4:29828006-29828025 | Msa1149030:CDS | 40.0% |
| ATCCATTTGTCTGCGGATAT+CGG | - | chr7_4:29828385-29828404 | Msa1149030:CDS | 40.0% | |
| CTGCGGATATCGTAGTATAA+TGG | - | chr7_4:29828485-29828504 | Msa1149030:CDS | 40.0% | |
| ! | AGGAACCTCAAGTTCTTTTC+AGG | + | chr7_4:29828657-29828676 | None:intergenic | 40.0% |
| CTTGAGGTTCCTTCTACAAA+AGG | - | chr7_4:29828665-29828684 | Msa1149030:CDS | 40.0% | |
| !!! | GGTTTTGAAGCAAAGTGATG+TGG | - | chr7_4:29828686-29828705 | Msa1149030:CDS | 40.0% |
| AACACATTTGCCAGAATTGG+AGG | - | chr7_4:29828838-29828857 | Msa1149030:CDS | 40.0% | |
| ACATTGGAACTTCTCGAGTT+TGG | - | chr7_4:29828891-29828910 | Msa1149030:CDS | 40.0% | |
| ! | GAGTTTGGAATATGCGTTAC+AGG | - | chr7_4:29828906-29828925 | Msa1149030:CDS | 40.0% |
| ! | CTTCTTGGAGCATCAGATAT+TGG | - | chr7_4:29829033-29829052 | Msa1149030:CDS | 40.0% |
| ATTGGCCAAACAACAAAAGC+AGG | - | chr7_4:29829051-29829070 | Msa1149030:CDS | 40.0% | |
| CAAAAGCAGGATGTATTTGC+TGG | - | chr7_4:29829064-29829083 | Msa1149030:CDS | 40.0% | |
| ! | ATGTATTTGCTGGAGAACAC+TGG | - | chr7_4:29829074-29829093 | Msa1149030:CDS | 40.0% |
| GGTGACTTTGTGAAAGCTAA+TGG | - | chr7_4:29829183-29829202 | Msa1149030:CDS | 40.0% | |
| AAAGCTAATGGTCTCCAAGA+AGG | - | chr7_4:29829195-29829214 | Msa1149030:CDS | 40.0% | |
| ATTCAATTGTGTGGGGAACT+AGG | + | chr7_4:29829323-29829342 | None:intergenic | 40.0% | |
| TTCAATTAGTTGATCGGGCT+TGG | + | chr7_4:29829381-29829400 | None:intergenic | 40.0% | |
| TGAACCAACCACGGTTTAAT+CGG | + | chr7_4:29829415-29829434 | None:intergenic | 40.0% | |
| !! | AAATCGGTTTGAACCAACCA+CGG | + | chr7_4:29829424-29829443 | None:intergenic | 40.0% |
| TCAACCATGGTTGAACAAGA+CGG | + | chr7_4:29829498-29829517 | None:intergenic | 40.0% | |
| ! | TGGTTGAATCGATTCAACCA+TGG | + | chr7_4:29829511-29829530 | None:intergenic | 40.0% |
| TCGATTCAACCAATTAACCG+TGG | - | chr7_4:29829519-29829538 | Msa1149030:CDS | 40.0% | |
| ! | AGAACAAACGACTCGAGTTT+TGG | + | chr7_4:29829557-29829576 | None:intergenic | 40.0% |
| ACTGTTGCAATTTAGACGGT+TGG | + | chr7_4:29829584-29829603 | None:intergenic | 40.0% | |
| GTTAAAGTGAGGCAACAACA+AGG | - | chr7_4:29829697-29829716 | Msa1149030:CDS | 40.0% | |
| ACAACAAGGAACAAAACCAG+AGG | - | chr7_4:29829711-29829730 | Msa1149030:CDS | 40.0% | |
| AAACCAGAGGCAAAAAAAGC+TGG | - | chr7_4:29829724-29829743 | Msa1149030:CDS | 40.0% | |
| !!! | TTTCCAGCTTTTTTTGCCTC+TGG | + | chr7_4:29829730-29829749 | None:intergenic | 40.0% |
| GGAACTGCAGTGGATAATAA+TGG | - | chr7_4:29829793-29829812 | Msa1149030:CDS | 40.0% | |
| ! | GAGGATGATGATGACATGCA+TGG | + | chr7_4:29826497-29826516 | None:intergenic | 45.0% |
| AGATGCTGAGGAAGAAGAAG+AGG | + | chr7_4:29826579-29826598 | None:intergenic | 45.0% | |
| TTCTTCCTCTGCAGCATCTT+GGG | - | chr7_4:29826598-29826617 | Msa1149030:intron | 45.0% | |
| GCAACAAGTTCAAGTGCAAG+AGG | - | chr7_4:29826943-29826962 | Msa1149030:CDS | 45.0% | |
| ACCGCAACAAGTGAATATCG+AGG | - | chr7_4:29827024-29827043 | Msa1149030:intron | 45.0% | |
| ! | GACGATGTTTTCGTGTGTGA+TGG | - | chr7_4:29827055-29827074 | Msa1149030:intron | 45.0% |
| ! | CGTGTGTGATGGTGTAAATG+GGG | - | chr7_4:29827066-29827085 | Msa1149030:CDS | 45.0% |
| ! | AGTGCTGCTAAGAGATTAGG+TGG | - | chr7_4:29827238-29827257 | Msa1149030:CDS | 45.0% |
| !!! | GCTGTGTTTTGGTTCTGACA+TGG | + | chr7_4:29827412-29827431 | None:intergenic | 45.0% |
| ! | TGTTGTGGAGGTACAATGAG+AGG | + | chr7_4:29827496-29827515 | None:intergenic | 45.0% |
| TCACAACCAATGGTTGGAGT+TGG | - | chr7_4:29827520-29827539 | Msa1149030:intron | 45.0% | |
| !! | TAGTAGCAGCAGGTTGGTAA+GGG | + | chr7_4:29827600-29827619 | None:intergenic | 45.0% |
| !! | TTAGTAGCAGCAGGTTGGTA+AGG | + | chr7_4:29827601-29827620 | None:intergenic | 45.0% |
| ! | TATCAGTTGTTTCCTGGTCC+TGG | - | chr7_4:29827772-29827791 | Msa1149030:intron | 45.0% |
| AACCTCATCAACCTATCACC+AGG | + | chr7_4:29827793-29827812 | None:intergenic | 45.0% | |
| !! | GGTGATAGGTTGATGAGGTT+AGG | - | chr7_4:29827793-29827812 | Msa1149030:intron | 45.0% |
| CTAGAAAGAAGAGGATGGCT+CGG | - | chr7_4:29827836-29827855 | Msa1149030:intron | 45.0% | |
| TCTGATCCACTTGCGAGATT+AGG | - | chr7_4:29827922-29827941 | Msa1149030:intron | 45.0% | |
| AATTGCACCAATGTTGCTGC+TGG | - | chr7_4:29827955-29827974 | Msa1149030:intron | 45.0% | |
| CTCATGCAAATCCAGGTAAC+TGG | - | chr7_4:29827983-29828002 | Msa1149030:intron | 45.0% | |
| TGCCAATACATCCAGTTACC+TGG | + | chr7_4:29827997-29828016 | None:intergenic | 45.0% | |
| TATTGGCAGACTATGACTGG+TGG | - | chr7_4:29828009-29828028 | Msa1149030:CDS | 45.0% | |
| ATTGGCAGACTATGACTGGT+GGG | - | chr7_4:29828010-29828029 | Msa1149030:CDS | 45.0% | |
| TCCACAAACCTGTCTCCTAT+CGG | + | chr7_4:29828145-29828164 | None:intergenic | 45.0% | |
| ATGGTCAACTACCGCAATTG+TGG | - | chr7_4:29828299-29828318 | Msa1149030:CDS | 45.0% | |
| !!! | GGTTTTAGAGGTCTCTGCAA+CGG | - | chr7_4:29828334-29828353 | Msa1149030:CDS | 45.0% |
| CTGCGGATATCGGAGTATAA+TGG | - | chr7_4:29828395-29828414 | Msa1149030:CDS | 45.0% | |
| GTGGTTGCAAACCACAATTG+TGG | + | chr7_4:29828439-29828458 | None:intergenic | 45.0% | |
| ! | GTGGTTTGCAACCACAATTG+TGG | - | chr7_4:29828444-29828463 | Msa1149030:CDS | 45.0% |
| CTACGATATCCGCAGACAAA+TGG | + | chr7_4:29828480-29828499 | None:intergenic | 45.0% | |
| GGAAGCCTGAAAAGAACTTG+AGG | - | chr7_4:29828649-29828668 | Msa1149030:CDS | 45.0% | |
| CAAAGTGATGTGGGAAGTCT+GGG | - | chr7_4:29828696-29828715 | Msa1149030:CDS | 45.0% | |
| AAAGTGATGTGGGAAGTCTG+GGG | - | chr7_4:29828697-29828716 | Msa1149030:CDS | 45.0% | |
| TGAATCCTCCGATTAAACCG+TGG | - | chr7_4:29829404-29829423 | Msa1149030:CDS | 45.0% | |
| TTGCTGCATTATTCCCATGC+TGG | + | chr7_4:29829765-29829784 | None:intergenic | 45.0% | |
| AAATTCAGCTGGAACTGCAG+TGG | - | chr7_4:29829783-29829802 | Msa1149030:CDS | 45.0% | |
| !!! | TTTGTATAATTTTTAAATTA+TGG | - | chr7_4:29828280-29828299 | Msa1149030:CDS | 5.0% |
| TGCAGAGGAAGAAGATGCTG+AGG | + | chr7_4:29826591-29826610 | None:intergenic | 50.0% | |
| CTTCTTCCTCTGCAGCATCT+TGG | - | chr7_4:29826597-29826616 | Msa1149030:intron | 50.0% | |
| !! | TGTTGGTGGTGGTGATTGCA+TGG | - | chr7_4:29826799-29826818 | Msa1149030:intron | 50.0% |
| GTGTCTCGGCGAATGATTTG+AGG | - | chr7_4:29827185-29827204 | Msa1149030:intron | 50.0% | |
| GCTGCTAAGAGATTAGGTGG+TGG | - | chr7_4:29827241-29827260 | Msa1149030:CDS | 50.0% | |
| TTGAAACACGCGTTCGACTC+AGG | + | chr7_4:29827448-29827467 | None:intergenic | 50.0% | |
| CCAACTCCAACTCCAACCAT+TGG | + | chr7_4:29827529-29827548 | None:intergenic | 50.0% | |
| CCAATGGTTGGAGTTGGAGT+TGG | - | chr7_4:29827526-29827545 | Msa1149030:intron | 50.0% | |
| TGTTTCCTGGTCCTGGTGAT+AGG | - | chr7_4:29827779-29827798 | Msa1149030:intron | 50.0% | |
| ATCAACCTATCACCAGGACC+AGG | + | chr7_4:29827787-29827806 | None:intergenic | 50.0% | |
| !! | GTCCTGGTGATAGGTTGATG+AGG | - | chr7_4:29827788-29827807 | Msa1149030:intron | 50.0% |
| GGCGGTTCATGTCTCATCAT+AGG | - | chr7_4:29827863-29827882 | Msa1149030:intron | 50.0% | |
| GATCCACTTGCGAGATTAGG+TGG | - | chr7_4:29827925-29827944 | Msa1149030:intron | 50.0% | |
| AGAACCACCAGCAGCAACAT+TGG | + | chr7_4:29827965-29827984 | None:intergenic | 50.0% | |
| GGTGGTTCTCATGCAAATCC+AGG | - | chr7_4:29827976-29827995 | Msa1149030:intron | 50.0% | |
| TTCCTTGGCACCTGTTGTTC+CGG | - | chr7_4:29828041-29828060 | Msa1149030:CDS | 50.0% | |
| GTGAGAACTCTGTGTCTGCA+GGG | + | chr7_4:29828106-29828125 | None:intergenic | 50.0% | |
| CAGACACAGAGTTCTCACCA+GGG | - | chr7_4:29828108-29828127 | Msa1149030:CDS | 50.0% | |
| CCACAAACCTGTCTCCTATC+GGG | + | chr7_4:29828144-29828163 | None:intergenic | 50.0% | |
| CGGCATAGCAACCACAATTG+TGG | - | chr7_4:29828354-29828373 | Msa1149030:CDS | 50.0% | |
| CTCCGATATCCGCAGACAAA+TGG | + | chr7_4:29828390-29828409 | None:intergenic | 50.0% | |
| GCAAAGTGATGTGGGAAGTC+TGG | - | chr7_4:29828695-29828714 | Msa1149030:CDS | 50.0% | |
| CCATCTCTTGCCTCCAATTC+TGG | + | chr7_4:29828851-29828870 | None:intergenic | 50.0% | |
| CCAGAATTGGAGGCAAGAGA+TGG | - | chr7_4:29828848-29828867 | Msa1149030:CDS | 50.0% | |
| ! | TGATCGGGCTTGGTTTAGTC+TGG | + | chr7_4:29829371-29829390 | None:intergenic | 50.0% |
| TCCTCCGATTAAACCGTGGT+TGG | - | chr7_4:29829408-29829427 | Msa1149030:CDS | 50.0% | |
| ACCAACCACGGTTTAATCGG+AGG | + | chr7_4:29829412-29829431 | None:intergenic | 50.0% | |
| ! | TTCGCCGTCTTGTTCAACCA+TGG | - | chr7_4:29829491-29829510 | Msa1149030:CDS | 50.0% |
| AACCAATTAACCGTGGCTCG+AGG | - | chr7_4:29829526-29829545 | Msa1149030:CDS | 50.0% | |
| AACAGCCCAAGATGCTGCAG+AGG | + | chr7_4:29826606-29826625 | None:intergenic | 55.0% | |
| ! | AGAAGAGGATGGCTCGGCAA+CGG | - | chr7_4:29827842-29827861 | Msa1149030:intron | 55.0% |
| CCACCACCTAATCTCGCAAG+TGG | + | chr7_4:29827931-29827950 | None:intergenic | 55.0% | |
| CCACTTGCGAGATTAGGTGG+TGG | - | chr7_4:29827928-29827947 | Msa1149030:intron | 55.0% | |
| TGCACCAATGTTGCTGCTGG+TGG | - | chr7_4:29827958-29827977 | Msa1149030:intron | 55.0% | |
| AACTCTGTGTCTGCAGGGTG+GGG | + | chr7_4:29828101-29828120 | None:intergenic | 55.0% | |
| GAACTCTGTGTCTGCAGGGT+GGG | + | chr7_4:29828102-29828121 | None:intergenic | 55.0% | |
| AGAACTCTGTGTCTGCAGGG+TGG | + | chr7_4:29828103-29828122 | None:intergenic | 55.0% | |
| GGTGAGAACTCTGTGTCTGC+AGG | + | chr7_4:29828107-29828126 | None:intergenic | 55.0% | |
| GCAGACACAGAGTTCTCACC+AGG | - | chr7_4:29828107-29828126 | Msa1149030:CDS | 55.0% | |
| AAGTGCACCCGATAGGAGAC+AGG | - | chr7_4:29828134-29828153 | Msa1149030:CDS | 55.0% | |
| CCCGATAGGAGACAGGTTTG+TGG | - | chr7_4:29828141-29828160 | Msa1149030:CDS | 55.0% | |
| GACCTCGAGCCACGGTTAAT+TGG | + | chr7_4:29829531-29829550 | None:intergenic | 55.0% | |
| TTTGGTGAGACCTCGAGCCA+CGG | + | chr7_4:29829539-29829558 | None:intergenic | 55.0% | |
| TGGTGGGACAGCAGCTTCCT+TGG | - | chr7_4:29828026-29828045 | Msa1149030:CDS | 60.0% | |
| TATCGGGTGCACTTCGACCC+TGG | + | chr7_4:29828128-29828147 | None:intergenic | 60.0% | |
| AGGGTCGAAGTGCACCCGAT+AGG | - | chr7_4:29828127-29828146 | Msa1149030:CDS | 60.0% | |
| ! | AGAGGATGGCTCGGCAACGG+CGG | - | chr7_4:29827845-29827864 | Msa1149030:intron | 65.0% |
| GGCCGGAACAACAGGTGCCA+AGG | + | chr7_4:29828046-29828065 | None:intergenic | 65.0% | |
| TCTGTGTCTGCAGGGTGGGG+CGG | + | chr7_4:29828098-29828117 | None:intergenic | 65.0% | |
| !! | GTCGGCTCGGCCGGAACAAC+AGG | + | chr7_4:29828054-29828073 | None:intergenic | 70.0% |
| !! | CACAGGAGGCTGCGTCGGCT+CGG | + | chr7_4:29828067-29828086 | None:intergenic | 70.0% |
| CGGTCCACAGGAGGCTGCGT+CGG | + | chr7_4:29828072-29828091 | None:intergenic | 70.0% | |
| TCTGCAGGGTGGGGCGGTCA+CGG | + | chr7_4:29828092-29828111 | None:intergenic | 70.0% | |
| CGAGCCGACGCAGCCTCCTG+TGG | - | chr7_4:29828065-29828084 | Msa1149030:CDS | 75.0% | |
| GGGCGGTCACGGTCCACAGG+AGG | + | chr7_4:29828081-29828100 | None:intergenic | 75.0% | |
| GTGGGGCGGTCACGGTCCAC+AGG | + | chr7_4:29828084-29828103 | None:intergenic | 75.0% | |
| !!! | GGAGGCTGCGTCGGCTCGGC+CGG | + | chr7_4:29828063-29828082 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 29826308 | 29829846 | 29826308 | ID=Msa1149030;Name=Msa1149030 |
| chr7_4 | mRNA | 29826308 | 29829846 | 29826308 | ID=Msa1149030-mRNA-1;Parent=Msa1149030;Name=Msa1149030-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|6|0|775 |
| chr7_4 | exon | 29827999 | 29829846 | 29827999 | ID=Msa1149030-mRNA-1:exon:7329;Parent=Msa1149030-mRNA-1 |
| chr7_4 | exon | 29827417 | 29827509 | 29827417 | ID=Msa1149030-mRNA-1:exon:7328;Parent=Msa1149030-mRNA-1 |
| chr7_4 | exon | 29827227 | 29827327 | 29827227 | ID=Msa1149030-mRNA-1:exon:7327;Parent=Msa1149030-mRNA-1 |
| chr7_4 | exon | 29827059 | 29827105 | 29827059 | ID=Msa1149030-mRNA-1:exon:7326;Parent=Msa1149030-mRNA-1 |
| chr7_4 | exon | 29826894 | 29826970 | 29826894 | ID=Msa1149030-mRNA-1:exon:7325;Parent=Msa1149030-mRNA-1 |
| chr7_4 | exon | 29826308 | 29826469 | 29826308 | ID=Msa1149030-mRNA-1:exon:7324;Parent=Msa1149030-mRNA-1 |
| chr7_4 | CDS | 29827999 | 29829846 | 29827999 | ID=Msa1149030-mRNA-1:cds;Parent=Msa1149030-mRNA-1 |
| chr7_4 | CDS | 29827417 | 29827509 | 29827417 | ID=Msa1149030-mRNA-1:cds;Parent=Msa1149030-mRNA-1 |
| chr7_4 | CDS | 29827227 | 29827327 | 29827227 | ID=Msa1149030-mRNA-1:cds;Parent=Msa1149030-mRNA-1 |
| chr7_4 | CDS | 29827059 | 29827105 | 29827059 | ID=Msa1149030-mRNA-1:cds;Parent=Msa1149030-mRNA-1 |
| chr7_4 | CDS | 29826894 | 29826970 | 29826894 | ID=Msa1149030-mRNA-1:cds;Parent=Msa1149030-mRNA-1 |
| chr7_4 | CDS | 29826308 | 29826469 | 29826308 | ID=Msa1149030-mRNA-1:cds;Parent=Msa1149030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
