AlfalfaGEDB | Msa1149510

M. sativa cultivar zhongmu-4 / Msa1149510

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1149510	XP_024626395.1	94.393	428	3	1	1	428	1	407	0.0	825

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1149510	sp\|P43293\|PBL11_ARATH	62.559	422	123	3	1	422	1	387	0.0	547

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1149510	I3SLM4	94.393	428	3	1	1	428	1	407	0.0	825

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1149510	MtrunA17_Chr7g0238671	94.393	428	3	1	1	428	1	407	0.0	825
Msa1149510	MtrunA17_Chr2g0328171	65.287	435	116	4	1	428	1	407	0.0	573
Msa1149510	MtrunA17_Chr5g0435211	66.754	382	104	3	1	380	1	361	0.0	536
Msa1149510	MtrunA17_Chr3g0111631	65.803	386	108	3	1	384	3	366	0.0	517
Msa1149510	MtrunA17_Chr4g0031541	57.576	429	146	6	1	426	9	404	5.51e-173	490
Msa1149510	MtrunA17_Chr2g0328211	61.842	380	110	4	1	379	1	346	5.53e-170	480
Msa1149510	MtrunA17_Chr5g0416311	59.744	390	131	2	1	387	1	367	2.95e-169	481
Msa1149510	MtrunA17_Chr4g0031561	57.143	441	139	6	1	426	9	414	5.29e-164	468
Msa1149510	MtrunA17_Chr4g0031571	55.305	443	146	7	1	426	9	416	8.40e-163	464
Msa1149510	MtrunA17_Chr4g0031591	55.000	440	147	7	1	425	9	412	1.11e-162	464

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1149510	AT5G02290.2	62.559	422	123	3	1	422	1	387	0.0	547
Msa1149510	AT5G02290.1	62.559	422	123	3	1	422	1	387	0.0	547
Msa1149510	AT2G28930.3	62.471	437	133	4	1	428	1	415	0.0	541
Msa1149510	AT2G28930.2	62.471	437	130	5	1	428	1	412	0.0	538
Msa1149510	AT1G07570.1	61.785	437	131	5	1	428	1	410	0.0	532
Msa1149510	AT1G07570.5	61.785	437	131	5	1	428	1	410	0.0	532
Msa1149510	AT1G07570.2	61.785	437	131	5	1	428	1	410	0.0	532
Msa1149510	AT2G28930.1	64.899	396	109	3	42	428	49	423	0.0	526
Msa1149510	AT1G07570.3	63.855	415	120	4	23	428	28	421	0.0	525
Msa1149510	AT2G39660.1	60.367	381	124	2	1	381	1	354	1.04e-166	474

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Find 139 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTGCGTTTGTTGGAT+AGG	0.440029	7_4:-31190312	None:intergenic
AAACTGTAGTGTTGTCTATG+TGG	0.602569	7_4:+31190819	Msa1149510:three_prime_UTR
AAATCACTGATAAAAGTTTA+AGG	0.206739	7_4:-31187034	None:intergenic
AACCTCGGCCACAATGCATC+CGG	0.455051	7_4:+31190532	Msa1149510:CDS
AAGACATTGTGAAGCAAGGG+CGG	0.635211	7_4:-31190395	None:intergenic
AAGAGAAAGTTTGTTAATGG+AGG	0.525010	7_4:-31186851	None:intergenic
AAGAGCGATGTATATAGTTT+TGG	0.325980	7_4:+31190196	Msa1149510:CDS
AAGGCTTGGCCCATTCGACT+AGG	0.571185	7_4:-31190288	None:intergenic
AAGTCACGGTATATGACTTT+AGG	0.287225	7_4:-31189290	None:intergenic
AATAAGGCCAAATATGGACG+AGG	0.672932	7_4:+31190432	Msa1149510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCATGAAATGGGTACAAAA+GGG	-	chr7_4:31186982-31187001	None:intergenic	30.0%
ATTCATGAAATGGGTACAAA+AGG	-	chr7_4:31186983-31187002	None:intergenic	30.0%
CAAGAATATTCCATAGATTC+AGG	-	chr7_4:31187252-31187271	None:intergenic	30.0%
TGGAATATTCTTGAGATCTT+TGG	+	chr7_4:31187259-31187278	Msa1149510:intron	30.0%
TGTGAGAGTTTATGTGAATT+TGG	+	chr7_4:31187623-31187642	Msa1149510:intron	30.0%
GTGAGAGTTTATGTGAATTT+GGG	+	chr7_4:31187624-31187643	Msa1149510:intron	30.0%
TGTGAGTGTTAATGTGAATT+TGG	+	chr7_4:31187731-31187750	Msa1149510:intron	30.0%
TTGTTCTCCTTTGATCTTAT+TGG	+	chr7_4:31188753-31188772	Msa1149510:intron	30.0%
ACGTTTGTATTAGAACATAG+AGG	-	chr7_4:31189151-31189170	None:intergenic	30.0%
GAAATCATCATCTTCAATAC+AGG	+	chr7_4:31189176-31189195	Msa1149510:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	31186830	31191109	31186830	ID=Msa1149510;Name=Msa1149510
chr7_4	mRNA	31186830	31191109	31186830	ID=Msa1149510-mRNA-1;Parent=Msa1149510;Name=Msa1149510-mRNA-1;_AED=0.05;_eAED=0.07;_QI=235\|0.8\|0.66\|1\|1\|1\|6\|482\|428
chr7_4	exon	31186830	31187116	31186830	ID=Msa1149510-mRNA-1:exon:7565;Parent=Msa1149510-mRNA-1
chr7_4	exon	31188096	31188418	31188096	ID=Msa1149510-mRNA-1:exon:7566;Parent=Msa1149510-mRNA-1
chr7_4	exon	31188921	31189060	31188921	ID=Msa1149510-mRNA-1:exon:7567;Parent=Msa1149510-mRNA-1
chr7_4	exon	31189139	31189340	31189139	ID=Msa1149510-mRNA-1:exon:7568;Parent=Msa1149510-mRNA-1
chr7_4	exon	31189438	31189561	31189438	ID=Msa1149510-mRNA-1:exon:7569;Parent=Msa1149510-mRNA-1
chr7_4	exon	31190182	31191109	31190182	ID=Msa1149510-mRNA-1:exon:7570;Parent=Msa1149510-mRNA-1
chr7_4	five_prime_UTR	31186830	31187064	31186830	ID=Msa1149510-mRNA-1:five_prime_utr;Parent=Msa1149510-mRNA-1
chr7_4	CDS	31187065	31187116	31187065	ID=Msa1149510-mRNA-1:cds;Parent=Msa1149510-mRNA-1
chr7_4	CDS	31188096	31188418	31188096	ID=Msa1149510-mRNA-1:cds;Parent=Msa1149510-mRNA-1
chr7_4	CDS	31188921	31189060	31188921	ID=Msa1149510-mRNA-1:cds;Parent=Msa1149510-mRNA-1
chr7_4	CDS	31189139	31189340	31189139	ID=Msa1149510-mRNA-1:cds;Parent=Msa1149510-mRNA-1
chr7_4	CDS	31189438	31189561	31189438	ID=Msa1149510-mRNA-1:cds;Parent=Msa1149510-mRNA-1
chr7_4	CDS	31190182	31190627	31190182	ID=Msa1149510-mRNA-1:cds;Parent=Msa1149510-mRNA-1
chr7_4	three_prime_UTR	31190628	31191109	31190628	ID=Msa1149510-mRNA-1:three_prime_utr;Parent=Msa1149510-mRNA-1

Gene Sequence

>Msa1149510

ATGGGTGCTTGTTGGAGTAATAAGGTTAAGTCTGTGAGTCCTTCAAACACAGGGTTCACTTCAAGAAGTGTAAGCAGAAGTGGCCATGACATCAGCTCAACTAGCAGGAACTCATCAGCCTCTATATCAGTCACTTCTCGAAGTGAGGGTGAAATCTTGCAGTCTTCCAACTTGAAAAGCTTCAGCTACAATGAAGTCAGAGCGGCTACGAGAAATTTCCGGCCAGACAGTGTCTTAGGGGAAGGTGGTTTTGGTTCAGTTTTTAAAGGCTGGATTGATGAGCATTCACATGCTGCAACCAAACCAGGAATGGGTATTATTGTTGCTGTGAAGAGGCTTAACCAAGATGGGCATCAGGGTCACAGAGAATGGTTGGCTGAAATCAACTATCTAGGGCAACTTCAGCATCCTAATCTTGTCAAATTAATAGGATACTGCTTTGAAGATGAACATCGGCTCCTCGTTTACGAGTTTATGCCAAAGGGAAGCATGGAAAATCATCTTTTTAGGCGTGATGACTTAATCCTCTATGTTCTAATACAAACGTTGCTTGAAATCATCATCTTCAATACAGGAGGTTCTTATTTTCAACCATTCTCTTGGAGTTTGAGAATGAAAATCGCCCTCGGAGCTGCAAAAGGCCTTGCTTTTCTCCATAGTACAGAACCTAAAGTCATATACCGTGACTTCAAAACTTCGAATATACTGCTCGATTCTAACTATGATGCTAAACTTTCTGATTTTGGGTTGGCTAGAGATGGACCAACTGGAGATAAAAGCCATGTCTCTACTCGGGTCATGGGAACCCGTGGATATGCAGCACCAGAGTATCTAGCAACAGGCCATCTTACTGCAAAGAGCGATGTATATAGTTTTGGAGTAGTTCTTCTAGAAATTATATCAGGAAGACGTGCCATAGACAAAAACCTGCCATCCGGAGAACACAACCTAGTCGAATGGGCCAAGCCTTACCTATCCAACAAACGCAGAGTTTTTCGTGTAATGGATCCACGACTCGAAGGTCAATATTCACACAGCCGAGCTCATGCTGCAGCCGCCCTTGCTTCACAATGTCTTTCTGTGGAACCCAGAATAAGGCCAAATATGGACGAGGTTGTTAAAACATTGGAGCAGCTTCAGGAACCAAAGGATGCTCAGAAGAAAGGTTCTGATCACCGCGCACGCAATTCCAACCTCGGCCACAATGCATCCGGCAAAGGTAATGCGGATGCTACTAGAAAGGCTTCTGCTTATCCTAGACCGTCTGCTTCTCTCCTTCATGTTTGA

Protein sequence

>Msa1149510

MGACWSNKVKSVSPSNTGFTSRSVSRSGHDISSTSRNSSASISVTSRSEGEILQSSNLKSFSYNEVRAATRNFRPDSVLGEGGFGSVFKGWIDEHSHAATKPGMGIIVAVKRLNQDGHQGHREWLAEINYLGQLQHPNLVKLIGYCFEDEHRLLVYEFMPKGSMENHLFRRDDLILYVLIQTLLEIIIFNTGGSYFQPFSWSLRMKIALGAAKGLAFLHSTEPKVIYRDFKTSNILLDSNYDAKLSDFGLARDGPTGDKSHVSTRVMGTRGYAAPEYLATGHLTAKSDVYSFGVVLLEIISGRRAIDKNLPSGEHNLVEWAKPYLSNKRRVFRVMDPRLEGQYSHSRAHAAAALASQCLSVEPRIRPNMDEVVKTLEQLQEPKDAQKKGSDHRARNSNLGHNASGKGNADATRKASAYPRPSASLLHV*