AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1149790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1149790 MtrunA17_Chr7g0238921 95.608 296 13 0 1 296 1 296 0.0 592
Msa1149790 MtrunA17_Chr5g0418781 41.509 159 74 5 124 273 124 272 7.97e-26 103
Msa1149790 MtrunA17_Chr4g0051881 71.930 57 16 0 124 180 178 234 1.90e-23 98.2
Msa1149790 MtrunA17_Chr2g0294231 52.941 85 29 1 124 197 203 287 7.08e-23 97.1
Msa1149790 MtrunA17_Chr7g0270191 38.217 157 72 5 124 268 145 288 1.10e-22 95.1
Msa1149790 MtrunA17_Chr1g0194481 66.667 57 19 0 124 180 158 214 2.66e-22 94.7
Msa1149790 MtrunA17_Chr1g0150801 64.912 57 20 0 124 180 102 158 6.57e-22 90.1
Msa1149790 MtrunA17_Chr5g0443131 66.667 57 19 0 124 180 157 213 1.66e-21 92.4
Msa1149790 MtrunA17_Chr8g0383351 64.912 57 20 0 124 180 160 216 2.78e-21 90.1
Msa1149790 MtrunA17_Chr3g0106491 64.912 57 20 0 124 180 365 421 5.86e-21 92.8
Msa1149790 MtrunA17_Chr3g0106491 59.649 57 22 1 124 180 198 253 7.40e-15 74.7
Msa1149790 MtrunA17_Chr3g0129321 61.404 57 22 0 124 180 118 174 5.99e-21 88.6
Msa1149790 MtrunA17_Chr7g0224801 61.404 57 22 0 124 180 93 149 7.36e-21 87.4
Msa1149790 MtrunA17_Chr5g0445311 63.158 57 21 0 124 180 364 420 8.74e-21 92.4
Msa1149790 MtrunA17_Chr5g0445311 57.895 57 23 1 124 180 200 255 1.57e-13 70.9
Msa1149790 MtrunA17_Chr5g0418191 62.712 59 22 0 122 180 318 376 1.01e-20 91.7
Msa1149790 MtrunA17_Chr5g0418191 59.322 59 23 1 123 181 150 207 5.72e-15 74.7
Msa1149790 MtrunA17_Chr3g0129361 64.912 57 20 0 124 180 144 200 1.04e-20 88.2
Msa1149790 MtrunA17_Chr3g0101131 63.158 57 21 0 124 180 415 471 1.25e-20 92.0
Msa1149790 MtrunA17_Chr3g0101131 45.882 85 38 2 103 180 215 298 7.19e-14 71.6
Msa1149790 MtrunA17_Chr4g0068541 61.017 59 23 0 124 182 208 266 3.85e-20 89.7
Msa1149790 MtrunA17_Chr5g0432161 63.158 57 21 0 124 180 421 477 7.82e-20 89.4
Msa1149790 MtrunA17_Chr5g0432161 63.158 57 20 1 124 180 244 299 3.47e-16 78.6
Msa1149790 MtrunA17_Chr3g0079691 46.226 106 44 3 124 223 495 593 8.26e-20 89.7
Msa1149790 MtrunA17_Chr3g0079691 51.429 70 33 1 115 184 271 339 1.98e-14 73.6
Msa1149790 MtrunA17_Chr7g0218081 61.017 59 23 0 122 180 408 466 8.49e-20 89.4
Msa1149790 MtrunA17_Chr7g0218081 56.667 60 21 2 123 180 227 283 2.30e-13 70.1
Msa1149790 MtrunA17_Chr4g0042831 59.322 59 24 0 122 180 276 334 2.61e-19 87.0
Msa1149790 MtrunA17_Chr4g0042831 30.667 150 90 5 34 180 63 201 8.77e-15 73.9
Msa1149790 MtrunA17_Chr8g0383251 55.932 59 26 0 122 180 106 164 3.24e-19 83.2
Msa1149790 MtrunA17_Chr8g0335811 49.438 89 41 1 96 180 122 210 4.07e-19 84.0
Msa1149790 MtrunA17_Chr5g0447701 57.377 61 26 0 120 180 248 308 5.40e-19 86.3
Msa1149790 MtrunA17_Chr4g0074001 48.684 76 38 1 106 180 340 415 1.26e-18 85.9
Msa1149790 MtrunA17_Chr1g0188941 57.895 57 24 0 124 180 51 107 1.36e-18 79.7
Msa1149790 MtrunA17_Chr3g0136961 33.918 171 92 6 41 208 72 224 1.62e-18 83.6
Msa1149790 MtrunA17_Chr7g0263531 60.714 56 22 0 125 180 362 417 2.35e-18 84.7
Msa1149790 MtrunA17_Chr7g0263531 58.929 56 22 1 125 180 190 244 9.35e-14 71.2
Msa1149790 MtrunA17_Chr1g0147881 50.667 75 33 2 110 180 245 319 2.69e-18 84.0
Msa1149790 MtrunA17_Chr7g0243891 59.649 57 23 0 124 180 374 430 2.97e-18 84.7
Msa1149790 MtrunA17_Chr7g0243891 59.649 57 22 1 124 180 216 271 7.34e-16 77.8
Msa1149790 MtrunA17_Chr7g0248721 61.404 57 21 1 124 180 141 196 5.18e-18 80.9
Msa1149790 MtrunA17_Chr1g0184691 49.367 79 36 2 110 184 276 354 5.52e-18 83.2
Msa1149790 MtrunA17_Chr4g0004911 59.649 57 23 0 124 180 336 392 9.71e-18 83.2
Msa1149790 MtrunA17_Chr4g0004911 59.649 57 23 0 124 180 184 240 2.48e-17 82.0
Msa1149790 MtrunA17_Chr7g0249301 57.895 57 24 0 124 180 292 348 1.42e-17 82.0
Msa1149790 MtrunA17_Chr7g0249301 53.571 56 25 1 125 180 63 117 1.07e-11 64.7
Msa1149790 MtrunA17_Chr7g0270051 57.576 66 27 1 116 180 45 110 1.48e-17 80.5
Msa1149790 MtrunA17_Chr7g0249311 57.895 57 24 0 124 180 392 448 1.54e-17 82.8
Msa1149790 MtrunA17_Chr7g0249311 54.839 62 27 1 119 180 174 234 1.56e-13 70.9
Msa1149790 MtrunA17_Chr1g0150281 49.333 75 37 1 125 198 141 215 2.81e-17 80.1
Msa1149790 MtrunA17_Chr4g0071521 36.220 127 69 4 64 180 178 302 3.03e-17 80.5
Msa1149790 MtrunA17_Chr7g0228941 43.750 80 39 3 107 180 30 109 3.23e-17 76.3
Msa1149790 MtrunA17_Chr8g0386241 50.877 57 28 0 124 180 103 159 4.30e-17 77.4
Msa1149790 MtrunA17_Chr8g0379461 50.633 79 37 2 107 184 59 136 7.38e-17 78.2
Msa1149790 MtrunA17_Chr3g0139021 43.373 83 43 2 106 184 293 375 7.79e-17 80.1
Msa1149790 MtrunA17_Chr8g0348311 48.718 78 37 2 106 182 139 214 1.05e-16 79.3
Msa1149790 MtrunA17_Chr5g0401821 45.570 79 39 2 106 180 178 256 2.31e-16 77.4
Msa1149790 MtrunA17_Chr4g0053281 45.570 79 39 2 106 180 245 323 2.48e-16 78.2
Msa1149790 MtrunA17_Chr8g0387981 32.000 150 90 5 36 178 45 189 2.96e-16 78.2
Msa1149790 MtrunA17_Chr2g0333851 52.632 57 26 1 125 180 170 226 3.25e-16 77.4
Msa1149790 MtrunA17_Chr2g0293481 42.268 97 49 2 91 180 228 324 3.76e-16 78.6
Msa1149790 MtrunA17_Chr1g0202461 53.968 63 28 1 119 180 256 318 5.52e-16 77.4
Msa1149790 MtrunA17_Chr1g0189391 56.897 58 24 1 124 180 97 154 5.77e-16 77.0
Msa1149790 MtrunA17_Chr6g0485431 55.172 58 25 1 124 180 154 211 7.07e-16 77.0
Msa1149790 MtrunA17_Chr4g0060271 58.621 58 23 1 124 180 255 312 1.56e-15 76.6
Msa1149790 MtrunA17_Chr2g0322391 54.839 62 27 1 124 184 349 410 1.56e-15 76.6
Msa1149790 MtrunA17_Chr2g0284321 54.098 61 27 1 125 184 36 96 1.57e-15 73.9
Msa1149790 MtrunA17_Chr7g0216891 48.611 72 35 2 110 180 206 276 1.85e-15 76.6
Msa1149790 MtrunA17_Chr3g0099641 54.098 61 27 1 125 184 252 312 2.23e-15 76.3
Msa1149790 MtrunA17_Chr4g0051181 47.222 72 36 2 110 180 230 300 3.81e-15 75.5
Msa1149790 MtrunA17_Chr8g0387501 53.226 62 28 1 120 180 125 186 4.08e-15 73.9
Msa1149790 MtrunA17_Chr7g0270831 45.556 90 33 2 92 180 199 273 5.51e-15 74.7
Msa1149790 MtrunA17_Chr7g0248691 39.130 115 65 3 122 231 152 266 5.90e-15 73.9
Msa1149790 MtrunA17_Chr2g0319961 57.895 57 23 1 125 180 81 137 6.20e-15 73.2
Msa1149790 MtrunA17_Chr4g0075201 56.897 58 24 1 124 180 267 324 6.65e-15 74.7
Msa1149790 MtrunA17_Chr2g0288871 38.938 113 52 3 70 180 265 362 7.25e-15 74.7
Msa1149790 MtrunA17_Chr3g0126391 57.377 61 23 1 121 178 130 190 9.24e-15 73.6
Msa1149790 MtrunA17_Chr4g0001361 52.632 57 26 1 125 180 163 219 2.01e-14 72.4
Msa1149790 MtrunA17_Chr1g0150271 50.877 57 27 1 125 180 102 158 4.93e-14 70.5
Msa1149790 MtrunA17_Chr2g0289181 53.333 60 27 1 122 180 12 71 5.02e-14 70.1
Msa1149790 MtrunA17_Chr2g0302391 52.632 57 26 1 125 180 212 268 2.76e-13 69.7
Msa1149790 MtrunA17_Chr7g0275531 49.275 69 28 2 117 178 107 175 7.35e-13 67.8
Msa1149790 MtrunA17_Chr8g0347251 44.737 76 35 2 110 178 118 193 2.23e-12 66.6
Msa1149790 MtrunA17_Chr5g0432071 50.000 58 28 1 124 181 104 160 2.55e-12 65.1
Msa1149790 MtrunA17_Chr4g0025051 50.877 57 27 1 125 180 336 392 1.03e-11 65.1
Msa1149790 MtrunA17_Chr8g0334541 53.448 58 24 1 124 178 103 160 1.44e-11 63.5
Msa1149790 MtrunA17_Chr8g0350621 51.724 58 25 1 124 178 111 168 1.97e-11 63.2
Msa1149790 MtrunA17_Chr2g0315381 49.231 65 30 1 122 183 142 206 3.44e-11 62.8
Msa1149790 MtrunA17_Chr7g0244981 51.724 58 25 1 124 178 122 179 5.54e-11 62.0
Msa1149790 MtrunA17_Chr3g0128671 52.632 57 24 1 125 178 128 184 6.20e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1149790 AT5G43290.1 42.857 259 122 11 30 275 21 266 4.32e-52 172
Msa1149790 AT1G69310.4 41.558 154 74 4 124 274 147 287 1.39e-28 111
Msa1149790 AT1G69310.2 41.558 154 74 4 124 274 147 287 1.39e-28 111
Msa1149790 AT1G69310.1 41.558 154 74 4 124 274 147 287 1.39e-28 111
Msa1149790 AT5G49520.1 32.597 181 100 3 124 285 221 398 1.88e-24 102
Msa1149790 AT1G69310.3 38.961 154 74 5 124 274 147 283 4.44e-23 96.7
Msa1149790 AT2G47260.1 66.102 59 20 0 124 182 174 232 8.22e-23 96.7
Msa1149790 AT4G39410.1 55.844 77 34 0 124 200 223 299 8.84e-23 96.3
Msa1149790 AT1G29860.1 68.421 57 18 0 124 180 136 192 1.76e-22 94.7
Msa1149790 AT4G18170.1 68.421 57 18 0 124 180 172 228 3.64e-22 94.7
Msa1149790 AT1G64000.1 64.912 57 20 0 124 180 114 170 7.16e-22 91.3
Msa1149790 AT2G25000.1 33.702 181 101 7 13 180 29 203 7.50e-22 92.8
Msa1149790 AT5G46350.1 66.667 57 19 0 124 180 183 239 2.37e-21 92.4
Msa1149790 AT1G13960.2 62.712 59 22 0 122 180 254 312 3.10e-21 92.8
Msa1149790 AT1G13960.2 62.069 58 21 1 123 180 75 131 2.37e-15 75.9
Msa1149790 AT2G03340.1 62.712 59 22 0 122 180 413 471 3.33e-21 94.0
Msa1149790 AT2G03340.1 45.833 96 40 3 93 180 214 305 6.12e-15 75.1
Msa1149790 AT2G04880.2 63.077 65 24 0 124 188 283 347 3.44e-21 93.6
Msa1149790 AT2G04880.2 67.500 40 13 0 124 163 111 150 1.16e-11 65.5
Msa1149790 AT1G13960.1 62.712 59 22 0 122 180 407 465 4.15e-21 93.6
Msa1149790 AT1G13960.1 62.069 58 21 1 123 180 228 284 2.07e-15 76.6
Msa1149790 AT2G04880.1 63.077 65 24 0 124 188 307 371 4.78e-21 93.2
Msa1149790 AT2G04880.1 67.500 40 13 0 124 163 111 150 1.06e-11 65.5
Msa1149790 AT5G41570.1 63.158 57 21 0 124 180 98 154 6.60e-21 88.2
Msa1149790 AT5G13080.1 61.404 57 22 0 124 180 67 123 1.95e-20 85.9
Msa1149790 AT2G25000.3 34.132 167 92 6 27 180 21 182 2.24e-20 88.6
Msa1149790 AT3G62340.1 64.912 57 20 0 124 180 118 174 2.48e-20 89.0
Msa1149790 AT5G07100.2 63.158 57 21 0 124 180 141 197 2.70e-20 87.4
Msa1149790 AT5G07100.2 39.450 109 48 2 120 228 20 110 1.12e-14 72.0
Msa1149790 AT5G07100.4 63.158 57 21 0 124 180 141 197 2.70e-20 87.4
Msa1149790 AT5G07100.4 39.450 109 48 2 120 228 20 110 1.12e-14 72.0
Msa1149790 AT5G07100.5 63.158 57 21 0 124 180 141 197 2.70e-20 87.4
Msa1149790 AT5G07100.5 39.450 109 48 2 120 228 20 110 1.12e-14 72.0
Msa1149790 AT5G07100.3 63.158 57 21 0 124 180 141 197 2.70e-20 87.4
Msa1149790 AT5G07100.3 39.450 109 48 2 120 228 20 110 1.12e-14 72.0
Msa1149790 AT2G46130.1 63.158 57 21 0 124 180 30 86 5.30e-20 83.6
Msa1149790 AT2G25000.2 36.111 144 76 5 50 180 20 160 5.59e-20 87.0
Msa1149790 AT2G25000.4 36.111 144 76 5 50 180 20 160 5.59e-20 87.0
Msa1149790 AT3G01970.1 59.649 57 23 0 124 180 65 121 5.88e-20 84.7
Msa1149790 AT5G07100.1 63.158 57 21 0 124 180 234 290 8.00e-20 88.2
Msa1149790 AT5G07100.1 39.450 109 48 2 120 228 113 203 1.20e-14 73.6
Msa1149790 AT5G56270.1 63.158 57 21 0 124 180 487 543 9.44e-20 89.7
Msa1149790 AT5G56270.1 57.576 66 27 1 119 184 268 332 1.59e-16 80.1
Msa1149790 AT3G01080.1 61.017 59 23 0 122 180 304 362 2.18e-19 88.2
Msa1149790 AT3G01080.1 58.621 58 23 1 123 180 166 222 1.63e-13 70.9
Msa1149790 AT3G01080.2 61.017 59 23 0 122 180 342 400 2.29e-19 88.2
Msa1149790 AT3G01080.2 59.649 57 22 1 124 180 205 260 1.48e-13 70.9
Msa1149790 AT5G26170.1 57.895 57 24 0 124 180 113 169 3.28e-19 83.6
Msa1149790 AT2G44745.1 63.793 58 21 0 124 181 145 202 3.49e-19 84.3
Msa1149790 AT4G26640.7 61.404 57 22 0 124 180 341 397 4.51e-19 87.4
Msa1149790 AT4G26640.7 59.322 59 23 1 122 180 169 226 3.23e-14 73.2
Msa1149790 AT4G26640.5 61.404 57 22 0 124 180 205 261 4.58e-19 86.7
Msa1149790 AT4G26640.5 59.322 59 23 1 122 180 33 90 3.99e-14 72.4
Msa1149790 AT4G26640.6 61.404 57 22 0 124 180 205 261 4.58e-19 86.7
Msa1149790 AT4G26640.6 59.322 59 23 1 122 180 33 90 3.99e-14 72.4
Msa1149790 AT4G26640.4 61.404 57 22 0 124 180 205 261 4.58e-19 86.7
Msa1149790 AT4G26640.4 59.322 59 23 1 122 180 33 90 3.99e-14 72.4
Msa1149790 AT4G26640.3 61.404 57 22 0 124 180 205 261 4.58e-19 86.7
Msa1149790 AT4G26640.3 59.322 59 23 1 122 180 33 90 3.99e-14 72.4
Msa1149790 AT4G26640.2 61.404 57 22 0 124 180 381 437 4.92e-19 87.4
Msa1149790 AT4G26640.2 59.322 59 23 1 122 180 209 266 3.28e-14 73.2
Msa1149790 AT4G26640.1 61.404 57 22 0 124 180 309 365 4.95e-19 87.4
Msa1149790 AT4G26640.1 59.322 59 23 1 122 180 137 194 3.58e-14 72.8
Msa1149790 AT2G38470.1 61.404 57 22 0 124 180 362 418 3.08e-18 85.1
Msa1149790 AT2G38470.1 62.069 58 21 1 123 180 183 239 5.77e-16 78.2
Msa1149790 AT5G64810.1 54.386 57 26 0 124 180 110 166 4.88e-18 80.9
Msa1149790 AT4G30935.1 46.835 79 41 1 103 180 309 387 5.32e-18 84.3
Msa1149790 AT4G30935.1 53.571 56 25 1 125 180 169 223 1.25e-11 65.1
Msa1149790 AT4G31800.2 54.237 59 26 1 125 182 112 170 6.82e-18 81.6
Msa1149790 AT4G31550.2 50.667 75 33 2 110 180 228 302 7.21e-18 82.8
Msa1149790 AT4G31550.1 50.667 75 33 2 110 180 229 303 7.36e-18 82.8
Msa1149790 AT1G55600.1 54.098 61 28 0 124 184 307 367 7.49e-18 84.0
Msa1149790 AT2G21900.1 54.386 57 26 0 124 180 109 165 7.55e-18 80.5
Msa1149790 AT2G30250.1 62.500 56 21 0 125 180 329 384 8.95e-18 83.2
Msa1149790 AT2G30250.1 56.140 57 24 1 124 180 166 221 1.00e-12 68.2
Msa1149790 AT4G31800.1 54.237 59 26 1 125 182 177 235 1.17e-17 82.0
Msa1149790 AT2G34830.1 34.254 181 90 7 21 180 100 272 1.65e-17 82.8
Msa1149790 AT2G23320.1 46.835 79 38 2 106 180 219 297 1.70e-17 81.6
Msa1149790 AT2G34830.2 34.254 181 90 7 21 180 109 281 2.14e-17 82.4
Msa1149790 AT2G37260.2 57.895 57 24 0 124 180 267 323 2.54e-17 81.6
Msa1149790 AT2G37260.2 58.929 56 22 1 125 180 84 138 2.65e-14 72.8
Msa1149790 AT2G37260.3 57.895 57 24 0 124 180 269 325 2.73e-17 81.3
Msa1149790 AT2G37260.3 58.929 56 22 1 125 180 86 140 2.65e-14 72.8
Msa1149790 AT2G37260.1 57.895 57 24 0 124 180 349 405 3.01e-17 82.0
Msa1149790 AT2G37260.1 58.929 56 22 1 125 180 166 220 2.55e-14 73.2
Msa1149790 AT4G26440.1 56.897 58 25 0 124 181 372 429 3.29e-17 82.0
Msa1149790 AT4G26440.1 46.154 91 33 2 124 214 178 252 2.35e-16 79.7
Msa1149790 AT5G28650.1 49.367 79 36 2 106 180 241 319 3.54e-17 80.9
Msa1149790 AT2G30590.1 42.708 96 49 3 93 184 281 374 6.01e-17 80.9
Msa1149790 AT5G52830.1 60.000 60 23 1 122 180 163 222 8.08e-17 80.1
Msa1149790 AT3G04670.1 48.101 79 37 2 106 180 241 319 1.10e-16 79.3
Msa1149790 AT1G30650.1 44.643 112 52 4 78 180 164 274 1.86e-16 79.7
Msa1149790 AT2G24570.1 49.333 75 34 2 110 180 226 300 2.73e-16 78.2
Msa1149790 AT1G68150.1 44.578 83 44 2 99 180 211 292 4.88e-16 78.2
Msa1149790 AT1G80840.1 54.386 57 25 1 125 180 147 203 5.28e-16 77.0
Msa1149790 AT4G01250.1 48.718 78 37 2 106 182 112 187 8.48e-16 76.6
Msa1149790 AT1G29280.1 57.895 57 23 1 125 180 75 131 8.70e-16 75.9
Msa1149790 AT1G62300.1 40.206 97 56 2 86 180 273 369 1.24e-15 77.4
Msa1149790 AT4G24240.1 41.758 91 47 3 94 180 250 338 1.93e-15 76.3
Msa1149790 AT5G15130.1 56.897 58 24 1 124 180 227 284 3.22e-15 76.3
Msa1149790 AT5G15130.2 56.897 58 24 1 124 180 185 242 3.31e-15 76.3
Msa1149790 AT2G46400.1 48.148 81 34 2 106 178 81 161 3.53e-15 74.7
Msa1149790 AT3G58710.1 59.649 57 22 1 125 180 72 128 5.84e-15 73.9
Msa1149790 AT3G58710.2 59.649 57 22 1 125 180 71 127 6.12e-15 73.6
Msa1149790 AT2G46130.2 56.140 57 21 1 124 180 30 82 1.08e-14 69.3
Msa1149790 AT5G45050.2 46.429 84 42 2 100 180 1126 1209 1.11e-14 75.1
Msa1149790 AT5G45050.1 46.429 84 42 2 100 180 1154 1237 1.14e-14 75.1
Msa1149790 AT5G45050.4 46.429 84 42 2 100 180 1015 1098 1.44e-14 74.7
Msa1149790 AT4G23550.1 56.140 57 24 1 125 180 141 197 1.51e-14 73.2
Msa1149790 AT4G04450.2 53.125 64 29 1 125 187 199 262 2.09e-14 73.6
Msa1149790 AT1G18860.1 45.783 83 42 3 99 180 216 296 2.18e-14 73.6
Msa1149790 AT2G40740.1 54.098 61 25 1 124 181 173 233 2.44e-14 72.4
Msa1149790 AT2G40740.3 54.098 61 25 1 124 181 182 242 2.96e-14 72.0
Msa1149790 AT4G04450.1 53.125 64 29 1 125 187 293 356 3.18e-14 73.2
Msa1149790 AT4G22070.4 57.895 57 23 1 125 180 298 354 4.45e-14 72.8
Msa1149790 AT4G22070.3 57.895 57 23 1 125 180 298 354 4.45e-14 72.8
Msa1149790 AT4G22070.2 57.895 57 23 1 125 180 298 354 4.45e-14 72.8
Msa1149790 AT4G22070.1 57.895 57 23 1 125 180 298 354 4.45e-14 72.8
Msa1149790 AT3G01080.3 59.649 57 22 1 124 180 205 260 7.65e-14 71.2
Msa1149790 AT4G01720.1 55.172 58 25 1 124 180 239 296 3.25e-13 70.1
Msa1149790 AT5G24110.1 35.897 117 58 4 79 178 54 170 1.21e-12 67.4
Msa1149790 AT4G11070.2 52.459 61 26 1 121 178 106 166 1.95e-12 66.6
Msa1149790 AT4G11070.1 52.459 61 26 1 121 178 138 198 2.14e-12 67.0
Msa1149790 AT1G66560.1 49.153 59 27 1 124 179 103 161 2.72e-12 65.9
Msa1149790 AT4G23810.1 50.820 61 27 1 121 178 155 215 1.22e-11 64.7
Msa1149790 AT5G01900.1 41.121 107 48 5 125 216 111 217 1.26e-11 63.9
Msa1149790 AT1G69810.1 49.153 59 28 2 124 180 203 261 1.45e-11 64.7
Msa1149790 AT2G40750.1 50.000 58 26 1 124 178 152 209 1.71e-11 64.3
Msa1149790 AT1G69810.2 49.153 59 28 2 124 180 145 203 1.85e-11 64.3
Msa1149790 AT1G66550.2 44.444 63 32 1 124 183 103 165 3.61e-11 62.8
Msa1149790 AT1G66550.1 44.444 63 32 1 124 183 108 170 3.94e-11 62.4

Find 78 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCAGCATAATGGATTTC+TGG 0.092646 7_4:-32269780 Msa1149790:exon
CATGAACTTCACTTGCTTTA+TGG 0.118410 7_4:+32270018 None:intergenic
TATAATTGAAATATGAATTT+AGG 0.224485 7_4:+32272582 None:intergenic
TTGTGTACGGTCCAATAAAA+TGG 0.226460 7_4:+32269932 None:intergenic
CTTCACTTGCTTTATGGTCT+TGG 0.238976 7_4:+32270024 None:intergenic
TTCATTTCAAATATTTATTC+AGG 0.250036 7_4:-32272346 Msa1149790:CDS
TTGATGAAAATTGTTGAAAT+TGG 0.253295 7_4:+32272272 None:intergenic
TGAAGAGTTTACCTAGGATT+TGG 0.255247 7_4:+32271996 None:intergenic
AGCCCAATCTAGTAATTCTT+TGG 0.285857 7_4:-32269967 Msa1149790:CDS
AGAAAATAATGTCTTCTAAT+TGG 0.303170 7_4:-32272498 Msa1149790:CDS
ATTGTTGAAATTGGTTACTA+TGG 0.305605 7_4:+32272281 None:intergenic
AATTACTAGATTGGGCTTCA+TGG 0.316924 7_4:+32269973 None:intergenic
GATTGTCCCACTATGAAATA+AGG 0.327297 7_4:+32270110 None:intergenic
TTCACTTGCTTTATGGTCTT+GGG 0.328292 7_4:+32270025 None:intergenic
GGATATAGGTGGAGGAAGTA+TGG 0.340368 7_4:-32272041 Msa1149790:CDS
ACTTTGAAAATCAAATGTTT+TGG 0.341685 7_4:-32272083 Msa1149790:CDS
TTCCAAAGAATTACTAGATT+GGG 0.346671 7_4:+32269965 None:intergenic
ACCTTTCTCCTCCAGCATAA+TGG 0.348390 7_4:-32269788 Msa1149790:exon
TCACTATCAACATTGTTTGT+AGG 0.350268 7_4:+32269840 None:intergenic
GAAGAGTTTACCTAGGATTT+GGG 0.355592 7_4:+32271997 None:intergenic
AGGATTTGGGCTATTCTTGA+TGG 0.375798 7_4:+32272010 None:intergenic
AGAAGGGTTGCTTGAAGATA+TGG 0.390745 7_4:-32269883 Msa1149790:CDS
TGCTTATCCTTATTTCATAG+TGG 0.391267 7_4:-32270117 Msa1149790:CDS
AAATGAACCTATTAAAAGCT+TGG 0.401637 7_4:+32272362 None:intergenic
TGGACTTCTTCATTGGTGGA+TGG 0.401908 7_4:+32270072 None:intergenic
GTTCCAAAGAATTACTAGAT+TGG 0.406024 7_4:+32269964 None:intergenic
GCTTCTTAGCACCACACCTT+GGG 0.406138 7_4:+32270207 None:intergenic
CTCCATCATTGTCTTTGACA+TGG 0.406707 7_4:+32272519 None:intergenic
CACTATCAACATTGTTTGTA+GGG 0.407829 7_4:+32269841 None:intergenic
TAAGTGATTATGAGAGTGTC+AGG 0.409746 7_4:+32270161 None:intergenic
GCCTTGGACTTCTTCATTGG+TGG 0.411270 7_4:+32270068 None:intergenic
TGAAGAATCATGACTTAAGT+TGG 0.411681 7_4:+32272390 None:intergenic
GATTGGGTGATGATGGATAT+AGG 0.412049 7_4:-32272055 Msa1149790:CDS
GTAGCCTTGGACTTCTTCAT+TGG 0.412428 7_4:+32270065 None:intergenic
GATACGGTCCAAGAAAATTT+CGG 0.416624 7_4:-32269909 Msa1149790:CDS
GGCAATGGATTGGGTGATGA+TGG 0.417116 7_4:-32272062 Msa1149790:CDS
AGGAGAAAGGTGTGAGGAGA+AGG 0.422919 7_4:+32269800 None:intergenic
GGACTTCTTCATTGGTGGAT+GGG 0.423548 7_4:+32270073 None:intergenic
GAGAGTGTCAGGGTCTTCAT+TGG 0.440141 7_4:+32270172 None:intergenic
TGAAGATATGGTGCCATTCA+TGG 0.441742 7_4:-32269871 Msa1149790:CDS
TCCACCTCTTGTTATGCAGT+TGG 0.445677 7_4:-32269747 Msa1149790:three_prime_UTR
TCCTTGTGAAGAGGTAGCCT+TGG 0.445914 7_4:+32270052 None:intergenic
TCAGAGTTTCTATATTAGAA+AGG 0.451303 7_4:-32272133 Msa1149790:intron
CAAGAAAATTTCGGCTCAGA+AGG 0.452520 7_4:-32269900 Msa1149790:CDS
GTAGGGTTTCTAACCATGAA+TGG 0.482456 7_4:+32269858 None:intergenic
TGTGTACGGTCCAATAAAAT+GGG 0.485883 7_4:+32269933 None:intergenic
TTAAAGCATAATAAATATGA+TGG 0.486724 7_4:-32272548 Msa1149790:exon
CTTGCTTTATGGTCTTGGGT+TGG 0.490234 7_4:+32270029 None:intergenic
GCTTATCCTTATTTCATAGT+GGG 0.490566 7_4:-32270116 Msa1149790:CDS
CTTGGACCGTATCTTGTGTA+CGG 0.501432 7_4:+32269919 None:intergenic
AAACCAGAAATCCATTATGC+TGG 0.504021 7_4:+32269777 None:intergenic
TCAAGAATAGCCCAAATCCT+AGG 0.505398 7_4:-32272007 Msa1149790:intron
TGCATAACAAGAGGTGGAAG+TGG 0.506302 7_4:+32269752 None:intergenic
TCCATTATGCTGGAGGAGAA+AGG 0.508409 7_4:+32269787 None:intergenic
GAACAAACAGGAGTTACTAT+AGG 0.514245 7_4:-32270238 Msa1149790:intron
ACTCTCATAATCACTTATGA+AGG 0.527480 7_4:-32270155 Msa1149790:CDS
ATTGGACCGTACACAAGATA+CGG 0.536511 7_4:-32269925 Msa1149790:CDS
TGCTTCTTAGCACCACACCT+TGG 0.538042 7_4:+32270206 None:intergenic
ATCCATGTCAAAGACAATGA+TGG 0.541467 7_4:-32272521 Msa1149790:CDS
TTGGGTTGGTCCTTGTGAAG+AGG 0.546121 7_4:+32270043 None:intergenic
AAGGTGTGGTGCTAAGAAGC+AGG 0.570713 7_4:-32270204 Msa1149790:CDS
AAGGATAAGCAAAGTGCAAG+TGG 0.571322 7_4:+32270129 None:intergenic
GCCAACTGCATAACAAGAGG+TGG 0.583245 7_4:+32269746 None:intergenic
AAGAAAATTTCGGCTCAGAA+GGG 0.589966 7_4:-32269899 Msa1149790:CDS
TGCTGGAGGAGAAAGGTGTG+AGG 0.602724 7_4:+32269794 None:intergenic
CCAGAAATCCATTATGCTGG+AGG 0.607098 7_4:+32269780 None:intergenic
AAAGCAAGTGAAGTTCATGA+AGG 0.612429 7_4:-32270014 Msa1149790:CDS
TCATGTGGCAACATAAGAAG+AGG 0.619719 7_4:+32272430 None:intergenic
TCCAAGGCTACCTCTTCACA+AGG 0.631287 7_4:-32270053 Msa1149790:CDS
AATGTCTTCTAATTGGTCAG+AGG 0.638714 7_4:-32272491 Msa1149790:CDS
AGGTGCACCAACCCAAGGTG+TGG 0.643144 7_4:-32270218 Msa1149790:CDS
ACTATAGGTGCACCAACCCA+AGG 0.643448 7_4:-32270223 Msa1149790:CDS
TAAGCCAACTGCATAACAAG+AGG 0.657613 7_4:+32269743 None:intergenic
GTGATGATGGATATAGGTGG+AGG 0.658043 7_4:-32272049 Msa1149790:CDS
TGGGTGATGATGGATATAGG+TGG 0.674806 7_4:-32272052 Msa1149790:CDS
ACTTCAGATACTCTCTCATG+TGG 0.678108 7_4:+32272415 None:intergenic
TCCACCAATGAAGAAGTCCA+AGG 0.685535 7_4:-32270069 Msa1149790:CDS
AAGTGATTATGAGAGTGTCA+GGG 0.690845 7_4:+32270162 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTGAAATATGAATTT+AGG + chr7_4:32269748-32269767 None:intergenic 10.0%
!! TTAAAGCATAATAAATATGA+TGG - chr7_4:32269779-32269798 Msa1149790:exon 15.0%
!! TTCATTTCAAATATTTATTC+AGG - chr7_4:32269981-32270000 Msa1149790:CDS 15.0%
!! AAAAAAGAGTTAAAATTCTA+AGG - chr7_4:32271060-32271079 Msa1149790:intron 15.0%
!!! TTTTATAGTTGAATATCAAT+TGG - chr7_4:32271178-32271197 Msa1149790:intron 15.0%
!!! GATAAATAGTTGAATATTTT+AGG + chr7_4:32271261-32271280 None:intergenic 15.0%
!!! TTTTGCACTTTTATTTTTAA+GGG + chr7_4:32271852-32271871 None:intergenic 15.0%
!!! ATTTTGCACTTTTATTTTTA+AGG + chr7_4:32271853-32271872 None:intergenic 15.0%
!! AGAAAATAATGTCTTCTAAT+TGG - chr7_4:32269829-32269848 Msa1149790:CDS 20.0%
!! TTGATGAAAATTGTTGAAAT+TGG + chr7_4:32270058-32270077 None:intergenic 20.0%
!!! ACTTTGAAAATCAAATGTTT+TGG - chr7_4:32270244-32270263 Msa1149790:intron 20.0%
!! TACTATATATATGCATTAAC+AGG + chr7_4:32270432-32270451 None:intergenic 20.0%
!! AATGCATATATATAGTACTT+TGG - chr7_4:32270435-32270454 Msa1149790:intron 20.0%
!! AACATCGTATAAGATTTATA+AGG + chr7_4:32270851-32270870 None:intergenic 20.0%
!!! CATTTTAAGATAACAAAATG+AGG + chr7_4:32270926-32270945 None:intergenic 20.0%
!! TTACTCATTAATCATATAGT+CGG + chr7_4:32271149-32271168 None:intergenic 20.0%
!!! ATATTCAACTATAAAAGTGT+GGG + chr7_4:32271174-32271193 None:intergenic 20.0%
!!! TATAAAATTTGAAACTTGCA+AGG + chr7_4:32271288-32271307 None:intergenic 20.0%
!!! ATTAATGGAATTGTCAATTT+TGG + chr7_4:32271599-32271618 None:intergenic 20.0%
!! AATGAGTTATACATACAAAA+GGG - chr7_4:32271878-32271897 Msa1149790:intron 20.0%
!!! TTTTTAAACCAATCATACTA+TGG + chr7_4:32271921-32271940 None:intergenic 20.0%
! AAATGAACCTATTAAAAGCT+TGG + chr7_4:32269968-32269987 None:intergenic 25.0%
! ATTGTTGAAATTGGTTACTA+TGG + chr7_4:32270049-32270068 None:intergenic 25.0%
!! TTCAACAATTTTCATCAACA+AGG - chr7_4:32270060-32270079 Msa1149790:CDS 25.0%
!!! CATTTTTTTGTTAACTTGCA+TGG - chr7_4:32270097-32270116 Msa1149790:CDS 25.0%
!! ACTTGCATGGTAATTTTATT+AGG - chr7_4:32270110-32270129 Msa1149790:CDS 25.0%
! ATTAGACACATCAAATAAGT+TGG + chr7_4:32270155-32270174 None:intergenic 25.0%
! TCAGAGTTTCTATATTAGAA+AGG - chr7_4:32270194-32270213 Msa1149790:CDS 25.0%
!!! AAAATCAAATGTTTTGGCAA+TGG - chr7_4:32270250-32270269 Msa1149790:intron 25.0%
! TATATATGCATTAACAGGAT+TGG + chr7_4:32270427-32270446 None:intergenic 25.0%
!! CTAGACACTATCAATTTTAT+AGG + chr7_4:32270548-32270567 None:intergenic 25.0%
!! CATCAATAATGCTTCAATTT+TGG + chr7_4:32270668-32270687 None:intergenic 25.0%
!!! TCAAACGACTAACATTTTTT+AGG - chr7_4:32270887-32270906 Msa1149790:intron 25.0%
! TGGAAAAATTTACTACTTGT+GGG + chr7_4:32270982-32271001 None:intergenic 25.0%
! TTGGAAAAATTTACTACTTG+TGG + chr7_4:32270983-32271002 None:intergenic 25.0%
! GAGAATGAATGACTATTTAA+AGG + chr7_4:32271120-32271139 None:intergenic 25.0%
!! TATTCAACTATAAAAGTGTG+GGG + chr7_4:32271173-32271192 None:intergenic 25.0%
! GATATTCAACTATAAAAGTG+TGG + chr7_4:32271175-32271194 None:intergenic 25.0%
!! GCAAGTTTCAAATTTTATAG+TGG - chr7_4:32271289-32271308 Msa1149790:intron 25.0%
!! TCTAAAAAATGCTGCTTAAA+AGG - chr7_4:32271335-32271354 Msa1149790:intron 25.0%
!! TTTTTGTACGGAAAATACTT+GGG - chr7_4:32271650-32271669 Msa1149790:intron 25.0%
!!! TTTTAAGGGTATGTACAAAA+GGG + chr7_4:32271838-32271857 None:intergenic 25.0%
!!! TTTTTAAGGGTATGTACAAA+AGG + chr7_4:32271839-32271858 None:intergenic 25.0%
! CAATGAGTTATACATACAAA+AGG - chr7_4:32271877-32271896 Msa1149790:intron 25.0%
! AATCTTCTCAAATTAGCTAA+GGG + chr7_4:32272019-32272038 None:intergenic 25.0%
! TAATCTTCTCAAATTAGCTA+AGG + chr7_4:32272020-32272039 None:intergenic 25.0%
!!! ATCACAAATTTTTTATGCCA+TGG - chr7_4:32272067-32272086 Msa1149790:CDS 25.0%
! TTCCAAAGAATTACTAGATT+GGG + chr7_4:32272365-32272384 None:intergenic 25.0%
TGAAGAATCATGACTTAAGT+TGG + chr7_4:32269940-32269959 None:intergenic 30.0%
! CAAAAGACCAAGCTTTTAAT+AGG - chr7_4:32269958-32269977 Msa1149790:CDS 30.0%
!! TTTTCAATATCTGAGATGGT+AGG + chr7_4:32270008-32270027 None:intergenic 30.0%
! AGCATTTTCAATATCTGAGA+TGG + chr7_4:32270012-32270031 None:intergenic 30.0%
TTAGGTTTAGTTGCATGAAT+TGG - chr7_4:32270128-32270147 Msa1149790:CDS 30.0%
!!! AAATGTTTTGGCAATGGATT+GGG - chr7_4:32270256-32270275 Msa1149790:intron 30.0%
!! TAAATCAGCTTTGTTTGAGA+AGG + chr7_4:32270477-32270496 None:intergenic 30.0%
!! GCACTTGTAAGTATTTTAGA+AGG + chr7_4:32270815-32270834 None:intergenic 30.0%
! AAGATTTGGAATGTCAACAT+TGG + chr7_4:32271002-32271021 None:intergenic 30.0%
GCAAGTATTTAGGAAAGATT+TGG + chr7_4:32271016-32271035 None:intergenic 30.0%
!! AGTTGAGTTGATACATGTTA+TGG + chr7_4:32271094-32271113 None:intergenic 30.0%
GGTATTATAGTCATTCAGTT+AGG + chr7_4:32271395-32271414 None:intergenic 30.0%
!!! TTTTTTTCGGAAGTTTGGTT+GGG - chr7_4:32271494-32271513 Msa1149790:intron 30.0%
ATTCCATTAATGTGTACCTA+AGG - chr7_4:32271608-32271627 Msa1149790:intron 30.0%
AAAAAGCTACTACTAGCATT+GGG + chr7_4:32271635-32271654 None:intergenic 30.0%
! CTTTTTGTACGGAAAATACT+TGG - chr7_4:32271649-32271668 Msa1149790:intron 30.0%
! TTTAAGGGTATGTACAAAAG+GGG + chr7_4:32271837-32271856 None:intergenic 30.0%
TTTATCCACCATAGTATGAT+TGG - chr7_4:32271910-32271929 Msa1149790:intron 30.0%
TTAAACCAATCATACTATGG+TGG + chr7_4:32271918-32271937 None:intergenic 30.0%
ACTCTCATAATCACTTATGA+AGG - chr7_4:32272172-32272191 Msa1149790:intron 30.0%
! TGCTTATCCTTATTTCATAG+TGG - chr7_4:32272210-32272229 Msa1149790:intron 30.0%
! GCTTATCCTTATTTCATAGT+GGG - chr7_4:32272211-32272230 Msa1149790:intron 30.0%
GTTCCAAAGAATTACTAGAT+TGG + chr7_4:32272366-32272385 None:intergenic 30.0%
! ACTCATTTCACCCATTTTAT+TGG - chr7_4:32272384-32272403 Msa1149790:CDS 30.0%
CACTATCAACATTGTTTGTA+GGG + chr7_4:32272489-32272508 None:intergenic 30.0%
TCACTATCAACATTGTTTGT+AGG + chr7_4:32272490-32272509 None:intergenic 30.0%
ATCCATGTCAAAGACAATGA+TGG - chr7_4:32269806-32269825 Msa1149790:CDS 35.0%
AATGTCTTCTAATTGGTCAG+AGG - chr7_4:32269836-32269855 Msa1149790:CDS 35.0%
!!! CAAATGTTTTGGCAATGGAT+TGG - chr7_4:32270255-32270274 Msa1149790:intron 35.0%
GAAGAGTTTACCTAGGATTT+GGG + chr7_4:32270333-32270352 None:intergenic 35.0%
TGAAGAGTTTACCTAGGATT+TGG + chr7_4:32270334-32270353 None:intergenic 35.0%
AGAAAGTGAAGAGTTTACCT+AGG + chr7_4:32270340-32270359 None:intergenic 35.0%
!! GCATTAACAGGATTGGTTTA+AGG + chr7_4:32270420-32270439 None:intergenic 35.0%
GATGAAAGACAAGCATTTAG+AGG - chr7_4:32270684-32270703 Msa1149790:intron 35.0%
ACTCAAATTGCACGATTAGT+AGG - chr7_4:32270763-32270782 Msa1149790:intron 35.0%
CAATACACGTGCAAGTATTT+AGG + chr7_4:32271026-32271045 None:intergenic 35.0%
!!! AGTCAGTTTTAGGTGATTGA+AGG + chr7_4:32271209-32271228 None:intergenic 35.0%
! ACTGTACGATAGTCAGTTTT+AGG + chr7_4:32271219-32271238 None:intergenic 35.0%
!!! AAGCAGCATTTTTTAGAAGC+TGG + chr7_4:32271332-32271351 None:intergenic 35.0%
!!! AGGAATGAGCATTTTTGGTT+GGG + chr7_4:32271375-32271394 None:intergenic 35.0%
!!! TAGGAATGAGCATTTTTGGT+TGG + chr7_4:32271376-32271395 None:intergenic 35.0%
! CAGTTAGGAATGAGCATTTT+TGG + chr7_4:32271380-32271399 None:intergenic 35.0%
!!! GTTTTTTTCGGAAGTTTGGT+TGG - chr7_4:32271493-32271512 Msa1149790:intron 35.0%
AAGAGCAGAATTCGCTTAAA+AGG - chr7_4:32271539-32271558 Msa1149790:intron 35.0%
CAAAAAGCTACTACTAGCAT+TGG + chr7_4:32271636-32271655 None:intergenic 35.0%
! GCTAGTAGTAGCTTTTTGTA+CGG - chr7_4:32271638-32271657 Msa1149790:intron 35.0%
ACAACACATACAACACATCT+GGG + chr7_4:32271734-32271753 None:intergenic 35.0%
GTTACCGTGACATTAAATCT+GGG + chr7_4:32271794-32271813 None:intergenic 35.0%
TGTTACCGTGACATTAAATC+TGG + chr7_4:32271795-32271814 None:intergenic 35.0%
! TTTTATGCCATGGAACAAAC+AGG - chr7_4:32272077-32272096 Msa1149790:CDS 35.0%
GAACAAACAGGAGTTACTAT+AGG - chr7_4:32272089-32272108 Msa1149790:CDS 35.0%
!! AAGTGATTATGAGAGTGTCA+GGG + chr7_4:32272168-32272187 None:intergenic 35.0%
!! TAAGTGATTATGAGAGTGTC+AGG + chr7_4:32272169-32272188 None:intergenic 35.0%
GATTGTCCCACTATGAAATA+AGG + chr7_4:32272220-32272239 None:intergenic 35.0%
TTCACTTGCTTTATGGTCTT+GGG + chr7_4:32272305-32272324 None:intergenic 35.0%
CATGAACTTCACTTGCTTTA+TGG + chr7_4:32272312-32272331 None:intergenic 35.0%
AAAGCAAGTGAAGTTCATGA+AGG - chr7_4:32272313-32272332 Msa1149790:CDS 35.0%
AATTACTAGATTGGGCTTCA+TGG + chr7_4:32272357-32272376 None:intergenic 35.0%
AGCCCAATCTAGTAATTCTT+TGG - chr7_4:32272360-32272379 Msa1149790:CDS 35.0%
TGTGTACGGTCCAATAAAAT+GGG + chr7_4:32272397-32272416 None:intergenic 35.0%
TTGTGTACGGTCCAATAAAA+TGG + chr7_4:32272398-32272417 None:intergenic 35.0%
GATACGGTCCAAGAAAATTT+CGG - chr7_4:32272418-32272437 Msa1149790:CDS 35.0%
AAGAAAATTTCGGCTCAGAA+GGG - chr7_4:32272428-32272447 Msa1149790:CDS 35.0%
AAACCAGAAATCCATTATGC+TGG + chr7_4:32272553-32272572 None:intergenic 35.0%
CTCCATCATTGTCTTTGACA+TGG + chr7_4:32269811-32269830 None:intergenic 40.0%
TCATGTGGCAACATAAGAAG+AGG + chr7_4:32269900-32269919 None:intergenic 40.0%
ACTTCAGATACTCTCTCATG+TGG + chr7_4:32269915-32269934 None:intergenic 40.0%
!! GATTGGGTGATGATGGATAT+AGG - chr7_4:32270272-32270291 Msa1149790:intron 40.0%
AGGATTTGGGCTATTCTTGA+TGG + chr7_4:32270320-32270339 None:intergenic 40.0%
TCAAGAATAGCCCAAATCCT+AGG - chr7_4:32270320-32270339 Msa1149790:intron 40.0%
GTAAGCCGTTTAGTTGAGAT+CGG - chr7_4:32270945-32270964 Msa1149790:intron 40.0%
GTCATCCGATCTCAACTAAA+CGG + chr7_4:32270953-32270972 None:intergenic 40.0%
!!! AAGTCACGCAGGGTTTTTTT+CGG - chr7_4:32271481-32271500 Msa1149790:intron 40.0%
!!! CAGGGTTTTTTTCGGAAGTT+TGG - chr7_4:32271489-32271508 Msa1149790:intron 40.0%
GGTCCTTAGGTACACATTAA+TGG + chr7_4:32271614-32271633 None:intergenic 40.0%
TGTCACCGTGACATTAAATC+TGG - chr7_4:32271681-32271700 Msa1149790:intron 40.0%
GTCACCGTGACATTAAATCT+GGG - chr7_4:32271682-32271701 Msa1149790:intron 40.0%
ATTAAATCTGGGCCACACAA+AGG - chr7_4:32271693-32271712 Msa1149790:intron 40.0%
CACAACACATACAACACATC+TGG + chr7_4:32271735-32271754 None:intergenic 40.0%
GATGTGTTGTATGTGTTGTG+TGG - chr7_4:32271735-32271754 Msa1149790:intron 40.0%
CACATTGCCACATAACATCT+GGG + chr7_4:32271761-32271780 None:intergenic 40.0%
ACACATTGCCACATAACATC+TGG + chr7_4:32271762-32271781 None:intergenic 40.0%
AGTAACTCCTGTTTGTTCCA+TGG + chr7_4:32272087-32272106 None:intergenic 40.0%
AAGGATAAGCAAAGTGCAAG+TGG + chr7_4:32272201-32272220 None:intergenic 40.0%
CTTCACTTGCTTTATGGTCT+TGG + chr7_4:32272306-32272325 None:intergenic 40.0%
ATTGGACCGTACACAAGATA+CGG - chr7_4:32272402-32272421 Msa1149790:CDS 40.0%
! CTTCTGAGCCGAAATTTTCT+TGG + chr7_4:32272429-32272448 None:intergenic 40.0%
CAAGAAAATTTCGGCTCAGA+AGG - chr7_4:32272427-32272446 Msa1149790:CDS 40.0%
AGAAGGGTTGCTTGAAGATA+TGG - chr7_4:32272444-32272463 Msa1149790:CDS 40.0%
!! TGAAGATATGGTGCCATTCA+TGG - chr7_4:32272456-32272475 Msa1149790:CDS 40.0%
GTAGGGTTTCTAACCATGAA+TGG + chr7_4:32272472-32272491 None:intergenic 40.0%
TAAGCCAACTGCATAACAAG+AGG + chr7_4:32272587-32272606 None:intergenic 40.0%
!! TGGGTGATGATGGATATAGG+TGG - chr7_4:32270275-32270294 Msa1149790:intron 45.0%
!! GTGATGATGGATATAGGTGG+AGG - chr7_4:32270278-32270297 Msa1149790:intron 45.0%
GGATATAGGTGGAGGAAGTA+TGG - chr7_4:32270286-32270305 Msa1149790:intron 45.0%
AACGTGAGTTAACTCACGCA+GGG + chr7_4:32271416-32271435 None:intergenic 45.0%
TAACGTGAGTTAACTCACGC+AGG + chr7_4:32271417-32271436 None:intergenic 45.0%
!! TGGGAGCGAGCATTTTAAGT+TGG - chr7_4:32271513-32271532 Msa1149790:intron 45.0%
!!! GGGAGCGAGCATTTTAAGTT+GGG - chr7_4:32271514-32271533 Msa1149790:intron 45.0%
ACCTTGCCTAGTGAATCCTT+TGG - chr7_4:32271567-32271586 Msa1149790:intron 45.0%
CCTTGCCTAGTGAATCCTTT+GGG - chr7_4:32271568-32271587 Msa1149790:intron 45.0%
! CCTAGTGAATCCTTTGGGTT+GGG - chr7_4:32271573-32271592 Msa1149790:intron 45.0%
!! TCAATTTTGGCCCAACCCAA+AGG + chr7_4:32271586-32271605 None:intergenic 45.0%
! ACTACTAGCATTGGGTCCTT+AGG + chr7_4:32271627-32271646 None:intergenic 45.0%
GTGGCCCAGATTTAATGTCA+CGG + chr7_4:32271787-32271806 None:intergenic 45.0%
CACAACACAACACCTTTGTG+TGG + chr7_4:32271708-32271727 None:intergenic 45.0%
!! CACAAAGGTGTTGTGTTGTG+TGG - chr7_4:32271708-32271727 Msa1149790:intron 45.0%
ATGTGGCAATGTGTGTTGTG+TGG - chr7_4:32271768-32271787 Msa1149790:intron 45.0%
GTGGCCCAGATTTAATGTCA+CGG - chr7_4:32271787-32271806 Msa1149790:intron 45.0%
!! GTACAAAAGGGGAAGCACTT+GGG + chr7_4:32271826-32271845 None:intergenic 45.0%
!! TGTACAAAAGGGGAAGCACT+TGG + chr7_4:32271827-32271846 None:intergenic 45.0%
! GGACTTCTTCATTGGTGGAT+GGG + chr7_4:32272257-32272276 None:intergenic 45.0%
TGGACTTCTTCATTGGTGGA+TGG + chr7_4:32272258-32272277 None:intergenic 45.0%
TCCACCAATGAAGAAGTCCA+AGG - chr7_4:32272258-32272277 Msa1149790:intron 45.0%
! GTAGCCTTGGACTTCTTCAT+TGG + chr7_4:32272265-32272284 None:intergenic 45.0%
! CTTGCTTTATGGTCTTGGGT+TGG + chr7_4:32272301-32272320 None:intergenic 45.0%
CTTGGACCGTATCTTGTGTA+CGG + chr7_4:32272411-32272430 None:intergenic 45.0%
ACCTTTCTCCTCCAGCATAA+TGG - chr7_4:32272539-32272558 Msa1149790:exon 45.0%
TCCATTATGCTGGAGGAGAA+AGG + chr7_4:32272543-32272562 None:intergenic 45.0%
CCAGAAATCCATTATGCTGG+AGG + chr7_4:32272550-32272569 None:intergenic 45.0%
!! CCTCCAGCATAATGGATTTC+TGG - chr7_4:32272547-32272566 Msa1149790:exon 45.0%
TGCATAACAAGAGGTGGAAG+TGG + chr7_4:32272578-32272597 None:intergenic 45.0%
! TCCACCTCTTGTTATGCAGT+TGG - chr7_4:32272580-32272599 Msa1149790:five_prime_UTR 45.0%
!! GGCAATGGATTGGGTGATGA+TGG - chr7_4:32270265-32270284 Msa1149790:intron 50.0%
CTGCGTGAGTTAACTCACGT+AGG - chr7_4:32271415-32271434 Msa1149790:intron 50.0%
TTGCGTGACTTAAGTCACGC+AGG - chr7_4:32271470-32271489 Msa1149790:intron 50.0%
TGCGTGACTTAAGTCACGCA+GGG - chr7_4:32271471-32271490 Msa1149790:intron 50.0%
GGATTCACTAGGCAAGGTGA+GGG + chr7_4:32271565-32271584 None:intergenic 50.0%
AGGATTCACTAGGCAAGGTG+AGG + chr7_4:32271566-32271585 None:intergenic 50.0%
CCCAAAGGATTCACTAGGCA+AGG + chr7_4:32271571-32271590 None:intergenic 50.0%
GCCTAGTGAATCCTTTGGGT+TGG - chr7_4:32271572-32271591 Msa1149790:intron 50.0%
CCCAACCCAAAGGATTCACT+AGG + chr7_4:32271576-32271595 None:intergenic 50.0%
TGTGTGGCCCAGATGTTATG+TGG - chr7_4:32271751-32271770 Msa1149790:intron 50.0%
ACTATAGGTGCACCAACCCA+AGG - chr7_4:32272104-32272123 Msa1149790:CDS 50.0%
GCTTCTTAGCACCACACCTT+GGG + chr7_4:32272123-32272142 None:intergenic 50.0%
TGCTTCTTAGCACCACACCT+TGG + chr7_4:32272124-32272143 None:intergenic 50.0%
! AAGGTGTGGTGCTAAGAAGC+AGG - chr7_4:32272123-32272142 Msa1149790:CDS 50.0%
!! GAGAGTGTCAGGGTCTTCAT+TGG + chr7_4:32272158-32272177 None:intergenic 50.0%
GCCTTGGACTTCTTCATTGG+TGG + chr7_4:32272262-32272281 None:intergenic 50.0%
TCCAAGGCTACCTCTTCACA+AGG - chr7_4:32272274-32272293 Msa1149790:CDS 50.0%
TCCTTGTGAAGAGGTAGCCT+TGG + chr7_4:32272278-32272297 None:intergenic 50.0%
!! TTGGGTTGGTCCTTGTGAAG+AGG + chr7_4:32272287-32272306 None:intergenic 50.0%
! AGGAGAAAGGTGTGAGGAGA+AGG + chr7_4:32272530-32272549 None:intergenic 50.0%
GCCAACTGCATAACAAGAGG+TGG + chr7_4:32272584-32272603 None:intergenic 50.0%
CTTAGCACCACACCTTGGGT+TGG + chr7_4:32272119-32272138 None:intergenic 55.0%
! TGCTGGAGGAGAAAGGTGTG+AGG + chr7_4:32272536-32272555 None:intergenic 55.0%
AGGTGCACCAACCCAAGGTG+TGG - chr7_4:32272109-32272128 Msa1149790:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 32269735 32272614 32269735 ID=Msa1149790;Name=Msa1149790
chr7_4 mRNA 32269735 32272614 32269735 ID=Msa1149790-mRNA-1;Parent=Msa1149790;Name=Msa1149790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=60|1|1|1|1|1|3|56|296
chr7_4 exon 32269735 32270250 32269735 ID=Msa1149790-mRNA-1:exon:7683;Parent=Msa1149790-mRNA-1
chr7_4 exon 32272008 32272151 32272008 ID=Msa1149790-mRNA-1:exon:7682;Parent=Msa1149790-mRNA-1
chr7_4 exon 32272268 32272614 32272268 ID=Msa1149790-mRNA-1:exon:7681;Parent=Msa1149790-mRNA-1
chr7_4 five_prime_UTR 32272555 32272614 32272555 ID=Msa1149790-mRNA-1:five_prime_utr;Parent=Msa1149790-mRNA-1
chr7_4 CDS 32272268 32272554 32272268 ID=Msa1149790-mRNA-1:cds;Parent=Msa1149790-mRNA-1
chr7_4 CDS 32272008 32272151 32272008 ID=Msa1149790-mRNA-1:cds;Parent=Msa1149790-mRNA-1
chr7_4 CDS 32269791 32270250 32269791 ID=Msa1149790-mRNA-1:cds;Parent=Msa1149790-mRNA-1
chr7_4 three_prime_UTR 32269735 32269790 32269735 ID=Msa1149790-mRNA-1:three_prime_utr;Parent=Msa1149790-mRNA-1
Gene Sequence

>Msa1149790

ATGATGGACTCATCCATGTCAAAGACAATGATGGAGAAAATAATGTCTTCTAATTGGTCAGAGGATGATGAACTTTTAAGAGAGCTTTTAGTTGATGAGTCTCCTCTTCTTATGTTGCCACATGAGAGAGTATCTGAAGTAACCAACTTAAGTCATGATTCTTCAAAAGACCAAGCTTTTAATAGGTTCATTTCAAATATTTATTCAGGTCCTACCATCTCAGATATTGAAAATGCTTTGTTAGTTACTAACCATAGTAACCAATTTCAACAATTTTCATCAACAAGAGTTTCTATATTAGAAAGGAGTTTGAGTAAGATTGAGAATAAGTATACTTTGAAAATCAAATGTTTTGGCAATGGATTGGGTGATGATGGATATAGGTGGAGGAAGTATGGTCAGAAATCCATCAAGAATAGCCCAAATCCTAGGAGTTACTATAGGTGCACCAACCCAAGGTGTGGTGCTAAGAAGCAGGTTGAGAGATCCAATGAAGACCCTGACACTCTCATAATCACTTATGAAGGACTCCACTTGCACTTTGCTTATCCTTATTTCATAGTGGGACAATCACATCAATCTCATTCCCATCCACCAATGAAGAAGTCCAAGGCTACCTCTTCACAAGGACCAACCCAAGACCATAAAGCAAGTGAAGTTCATGAAGGTCAGAATATACAAGAAGTCCATGAAGCCCAATCTAGTAATTCTTTGGAACTCATTTCACCCATTTTATTGGACCGTACACAAGATACGGTCCAAGAAAATTTCGGCTCAGAAGGGTTGCTTGAAGATATGGTGCCATTCATGGTTAGAAACCCTACAAACAATGTTGATAGTGATGATTACTCAAAATTTTCCTTCTCCTCACACCTTTCTCCTCCAGCATAA
Protein sequence

>Msa1149790

MMDSSMSKTMMEKIMSSNWSEDDELLRELLVDESPLLMLPHERVSEVTNLSHDSSKDQAFNRFISNIYSGPTISDIENALLVTNHSNQFQQFSSTRVSILERSLSKIENKYTLKIKCFGNGLGDDGYRWRKYGQKSIKNSPNPRSYYRCTNPRCGAKKQVERSNEDPDTLIITYEGLHLHFAYPYFIVGQSHQSHSHPPMKKSKATSSQGPTQDHKASEVHEGQNIQEVHEAQSSNSLELISPILLDRTQDTVQENFGSEGLLEDMVPFMVRNPTNNVDSDDYSKFSFSSHLSPPA*