Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152230 | XP_003623293.1 | 98.214 | 168 | 3 | 0 | 1 | 168 | 1 | 168 | 9.05e-109 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152230 | sp|O49595|HMGB1_ARATH | 70.548 | 146 | 40 | 1 | 3 | 148 | 5 | 147 | 4.13e-62 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152230 | G7KS90 | 98.214 | 168 | 3 | 0 | 1 | 168 | 1 | 168 | 4.32e-109 | 317 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1152230 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152230 | MtrunA17_Chr7g0242251 | 98.214 | 168 | 3 | 0 | 1 | 168 | 1 | 168 | 8.32e-113 | 317 |
| Msa1152230 | MtrunA17_Chr3g0143991 | 79.221 | 77 | 16 | 0 | 46 | 122 | 40 | 116 | 3.00e-36 | 123 |
| Msa1152230 | MtrunA17_Chr8g0370431 | 56.349 | 126 | 47 | 3 | 16 | 141 | 9 | 126 | 5.13e-35 | 119 |
| Msa1152230 | MtrunA17_Chr5g0407011 | 54.286 | 140 | 48 | 5 | 16 | 154 | 9 | 133 | 3.67e-32 | 112 |
| Msa1152230 | MtrunA17_Chr1g0212341 | 50.000 | 114 | 53 | 2 | 47 | 157 | 98 | 210 | 4.34e-27 | 101 |
| Msa1152230 | MtrunA17_Chr4g0052011 | 48.315 | 89 | 46 | 0 | 38 | 126 | 51 | 139 | 6.67e-22 | 86.3 |
| Msa1152230 | MtrunA17_Chr1g0155251 | 43.820 | 89 | 48 | 2 | 47 | 134 | 554 | 641 | 2.46e-12 | 63.9 |
| Msa1152230 | MtrunA17_Chr8g0387931 | 43.421 | 76 | 40 | 1 | 47 | 122 | 262 | 334 | 2.48e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152230 | AT3G51880.2 | 67.081 | 161 | 50 | 1 | 3 | 163 | 5 | 162 | 1.28e-63 | 194 |
| Msa1152230 | AT3G51880.5 | 70.548 | 146 | 40 | 1 | 3 | 148 | 5 | 147 | 4.19e-63 | 192 |
| Msa1152230 | AT3G51880.1 | 70.548 | 146 | 40 | 1 | 3 | 148 | 5 | 147 | 4.19e-63 | 192 |
| Msa1152230 | AT3G51880.3 | 70.548 | 146 | 40 | 1 | 3 | 148 | 5 | 147 | 4.19e-63 | 192 |
| Msa1152230 | AT3G51880.4 | 69.784 | 139 | 39 | 1 | 3 | 141 | 5 | 140 | 7.54e-59 | 181 |
| Msa1152230 | AT1G20693.2 | 63.866 | 119 | 37 | 1 | 42 | 160 | 29 | 141 | 2.65e-41 | 135 |
| Msa1152230 | AT1G20696.1 | 62.903 | 124 | 42 | 1 | 22 | 141 | 2 | 125 | 6.61e-40 | 132 |
| Msa1152230 | AT1G20693.3 | 68.000 | 100 | 32 | 0 | 42 | 141 | 29 | 128 | 2.81e-38 | 128 |
| Msa1152230 | AT1G20693.1 | 68.000 | 100 | 32 | 0 | 42 | 141 | 29 | 128 | 2.90e-38 | 128 |
| Msa1152230 | AT2G17560.2 | 60.000 | 115 | 42 | 2 | 42 | 155 | 26 | 137 | 9.69e-37 | 124 |
| Msa1152230 | AT2G17560.1 | 60.000 | 115 | 42 | 2 | 42 | 155 | 26 | 137 | 9.69e-37 | 124 |
| Msa1152230 | AT2G17560.3 | 62.162 | 111 | 38 | 2 | 42 | 151 | 26 | 133 | 1.08e-36 | 124 |
| Msa1152230 | AT1G20696.2 | 64.486 | 107 | 34 | 1 | 24 | 126 | 4 | 110 | 3.62e-35 | 120 |
| Msa1152230 | AT1G20696.5 | 66.667 | 102 | 30 | 1 | 25 | 122 | 5 | 106 | 4.28e-35 | 120 |
| Msa1152230 | AT1G20696.3 | 63.636 | 88 | 32 | 0 | 59 | 146 | 1 | 88 | 3.72e-29 | 103 |
| Msa1152230 | AT1G20696.4 | 63.855 | 83 | 30 | 0 | 59 | 141 | 1 | 83 | 6.09e-27 | 98.2 |
| Msa1152230 | AT4G35570.1 | 50.000 | 94 | 43 | 1 | 43 | 132 | 26 | 119 | 6.00e-26 | 96.3 |
| Msa1152230 | AT4G35570.2 | 50.000 | 94 | 43 | 1 | 43 | 132 | 26 | 119 | 6.00e-26 | 96.3 |
| Msa1152230 | AT2G34450.4 | 44.944 | 89 | 49 | 0 | 51 | 139 | 63 | 151 | 1.10e-21 | 86.3 |
| Msa1152230 | AT2G34450.3 | 44.944 | 89 | 49 | 0 | 51 | 139 | 63 | 151 | 1.10e-21 | 86.3 |
| Msa1152230 | AT2G34450.1 | 44.944 | 89 | 49 | 0 | 51 | 139 | 63 | 151 | 1.10e-21 | 86.3 |
| Msa1152230 | AT5G23420.1 | 54.651 | 86 | 38 | 1 | 31 | 116 | 95 | 179 | 3.26e-21 | 87.0 |
| Msa1152230 | AT2G34450.2 | 44.444 | 90 | 49 | 1 | 51 | 139 | 63 | 152 | 2.68e-20 | 82.8 |
Find 65 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTCCTTCTTAGTCTT+TGG | 0.199866 | 7_4:-37523069 | None:intergenic |
| TGGTTTGTTGGGATCTTTCT+TGG | 0.220642 | 7_4:-37523094 | None:intergenic |
| GCTGATACGGCCTTCACATT+AGG | 0.277113 | 7_4:-37523262 | None:intergenic |
| TTTGCAGCCTTGGCTTCATA+TGG | 0.316878 | 7_4:-37523693 | None:intergenic |
| TTAGTCTTTGGCACCTTCTC+AGG | 0.326317 | 7_4:-37523057 | None:intergenic |
| CTGATACGGCCTTCACATTA+GGG | 0.334691 | 7_4:-37523261 | None:intergenic |
| CTTGAACTTCCCTCAGTTGT+TGG | 0.336610 | 7_4:+37524503 | Msa1152230:three_prime_UTR |
| CTTGAAATATAATGTTTCAT+TGG | 0.346567 | 7_4:+37524380 | Msa1152230:three_prime_UTR |
| TTCTCTTCTTGCTGTGTCTT+CGG | 0.353067 | 7_4:+37521158 | Msa1152230:five_prime_UTR |
| CAAACTACTCAAACTAAGTT+TGG | 0.361366 | 7_4:-37524656 | None:intergenic |
| GAATATTTATCTCTTATTGC+TGG | 0.368858 | 7_4:+37524461 | Msa1152230:three_prime_UTR |
| AAGATCCCAACAAACCAAAA+AGG | 0.405230 | 7_4:+37523100 | Msa1152230:CDS |
| ATGAAGCCAAGGCTGCAAAA+AGG | 0.405842 | 7_4:+37523697 | Msa1152230:CDS |
| TCTGTTGTTTACAGAAAAGT+AGG | 0.423191 | 7_4:+37523012 | Msa1152230:intron |
| TGATTGTAGGTTGGAAAGGC+TGG | 0.424093 | 7_4:+37523366 | Msa1152230:intron |
| CGTCCTCTTCCTCATCATCT+TGG | 0.438258 | 7_4:-37524301 | None:intergenic |
| TCATCATCGTCCGCTGAACT+TGG | 0.443915 | 7_4:-37523847 | None:intergenic |
| GAAAGGCTGGAGGAGAGAAA+TGG | 0.460200 | 7_4:+37523379 | Msa1152230:CDS |
| GAAACTAACCGGTCATCAAC+TGG | 0.469423 | 7_4:-37521988 | None:intergenic |
| AGGGAACAGCAAAGACTTCA+AGG | 0.490288 | 7_4:+37521953 | Msa1152230:CDS |
| GAAATATAATGTTTCATTGG+TGG | 0.492483 | 7_4:+37524383 | Msa1152230:three_prime_UTR |
| CATGTAACTTACAGCTGATA+CGG | 0.500809 | 7_4:-37523275 | None:intergenic |
| ATATAATGTTTCATTGGTGG+AGG | 0.501168 | 7_4:+37524386 | Msa1152230:three_prime_UTR |
| GAAATGGAAATCCTTGACTA+AGG | 0.502988 | 7_4:+37523395 | Msa1152230:CDS |
| CAGAAAAGTAGGAAAGAGAA+AGG | 0.505983 | 7_4:+37523023 | Msa1152230:intron |
| GAATCAAAGAGACAAAGGTT+AGG | 0.506969 | 7_4:-37521138 | None:intergenic |
| CCTCTTCCTCATCATCTTGG+TGG | 0.513999 | 7_4:-37524298 | None:intergenic |
| AGAACGAAGACGATGACAAA+GGG | 0.518815 | 7_4:+37521928 | Msa1152230:exon |
| CTGAGGGAAGTTCAAGTGGC+TGG | 0.523259 | 7_4:-37524496 | None:intergenic |
| AAAGACTAAGAAGGAGAAGA+AGG | 0.533667 | 7_4:+37523071 | Msa1152230:CDS |
| AATGTTTCATTGGTGGAGGG+AGG | 0.535007 | 7_4:+37524390 | Msa1152230:three_prime_UTR |
| CAGGAAGACGAAGAAAGCGC+TGG | 0.539312 | 7_4:-37523127 | None:intergenic |
| CCACCAAGATGATGAGGAAG+AGG | 0.540543 | 7_4:+37524298 | Msa1152230:CDS |
| GGATTTCAGAAAGACTTTCA+AGG | 0.542513 | 7_4:+37523231 | Msa1152230:CDS |
| GAAGGTGCCAAAGACTAAGA+AGG | 0.548134 | 7_4:+37523062 | Msa1152230:CDS |
| GAAGAGAATCAAAGAGACAA+AGG | 0.548401 | 7_4:-37521143 | None:intergenic |
| AATAATGAAGATGAAGCAAG+TGG | 0.555668 | 7_4:+37523901 | Msa1152230:CDS |
| GGCTGCTGCTAAACCTGAGA+AGG | 0.556201 | 7_4:+37523044 | Msa1152230:CDS |
| TGAAGATGAAGCAAGTGGAG+AGG | 0.558529 | 7_4:+37523906 | Msa1152230:CDS |
| ATGGATGAAGGGTTGAAGAG+AGG | 0.560174 | 7_4:-37521206 | None:intergenic |
| ACTTTGATTGTAGGTTGGAA+AGG | 0.560820 | 7_4:+37523362 | Msa1152230:intron |
| GCATTGTGCCTCAAATGTGT+TGG | 0.591610 | 7_4:+37524551 | Msa1152230:three_prime_UTR |
| GGCAGAGAACCCTAATGTGA+AGG | 0.592629 | 7_4:+37523252 | Msa1152230:CDS |
| AAGTTCAGCGGACGATGATG+AGG | 0.594191 | 7_4:+37523849 | Msa1152230:CDS |
| GAAGACGATGACAAAGGGCA+AGG | 0.595311 | 7_4:+37521933 | Msa1152230:exon |
| AAAAGCTCCATATGAAGCCA+AGG | 0.600500 | 7_4:+37523686 | Msa1152230:CDS |
| TATAATGTTTCATTGGTGGA+GGG | 0.601363 | 7_4:+37524387 | Msa1152230:three_prime_UTR |
| TTGTAGGTTGGAAAGGCTGG+AGG | 0.616392 | 7_4:+37523369 | Msa1152230:intron |
| TTCAGCGGACGATGATGAGG+AGG | 0.617699 | 7_4:+37523852 | Msa1152230:CDS |
| AAGACGATGACAAAGGGCAA+GGG | 0.619855 | 7_4:+37521934 | Msa1152230:exon |
| ACAACTGAGGGAAGTTCAAG+TGG | 0.622358 | 7_4:-37524500 | None:intergenic |
| ATTGCTTACAGCCTTAGTCA+AGG | 0.624911 | 7_4:-37523406 | None:intergenic |
| TTGGTGCATACATAGTGTGT+AGG | 0.626919 | 7_4:-37524637 | None:intergenic |
| AGGAAGACGAAGAAAGCGCT+GGG | 0.627394 | 7_4:-37523126 | None:intergenic |
| GGATGACCACCAAGATGATG+AGG | 0.630902 | 7_4:+37524292 | Msa1152230:intron |
| ATGTTGACAGCCAAGTTCAG+CGG | 0.635286 | 7_4:+37523837 | Msa1152230:intron |
| GGGAACAGCAAAGACTTCAA+GGG | 0.641543 | 7_4:+37521954 | Msa1152230:CDS |
| GTACAATAACCAACAACTGA+GGG | 0.647202 | 7_4:-37524512 | None:intergenic |
| TAGAACGAAGACGATGACAA+AGG | 0.648840 | 7_4:+37521927 | Msa1152230:exon |
| AGTACAATAACCAACAACTG+AGG | 0.654621 | 7_4:-37524513 | None:intergenic |
| TATGAATGCTTATAATAACA+AGG | 0.656932 | 7_4:+37523740 | Msa1152230:CDS |
| TGATGAGGAGGAATCAGACA+AGG | 0.693157 | 7_4:+37523864 | Msa1152230:CDS |
| ATTTGAGGCACAATGCACAA+AGG | 0.700540 | 7_4:-37524544 | None:intergenic |
| TGATGAGGAAGAGGACGACG+AGG | 0.702863 | 7_4:+37524307 | Msa1152230:CDS |
| AAGACGAAGAAAGCGCTGGG+AGG | 0.711277 | 7_4:-37523123 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAAAGAAAAATATG+CGG | - | chr7_4:37524204-37524223 | None:intergenic | 10.0% |
| !!! | TAAGGTTTATGTTTTTTTTT+AGG | + | chr7_4:37521314-37521333 | Msa1152230:intron | 15.0% |
| !! | ATAACCATTAATCATAAAAA+GGG | - | chr7_4:37521576-37521595 | None:intergenic | 15.0% |
| !! | AATAACCATTAATCATAAAA+AGG | - | chr7_4:37521577-37521596 | None:intergenic | 15.0% |
| !! | TATATATCTATCTATTAAAG+AGG | - | chr7_4:37522223-37522242 | None:intergenic | 15.0% |
| !! | GAAATTAGAAATAAGAAAAA+AGG | - | chr7_4:37522572-37522591 | None:intergenic | 15.0% |
| !!! | TTTTTATTCAAAAAATGTTC+TGG | + | chr7_4:37522599-37522618 | Msa1152230:intron | 15.0% |
| !! | AAGTTAGAAATATGAAAAAA+AGG | - | chr7_4:37522767-37522786 | None:intergenic | 15.0% |
| !!! | TTTTTATTCTAAAAATGTTC+TGG | + | chr7_4:37522795-37522814 | Msa1152230:intron | 15.0% |
| !! | ACATTCAAAATAATAAAGTT+AGG | - | chr7_4:37523660-37523679 | None:intergenic | 15.0% |
| !!! | CTTTATTATTTTGAATGTAA+AGG | + | chr7_4:37523662-37523681 | Msa1152230:intron | 15.0% |
| !! | CCTAATTTATTCTTAAAAAT+TGG | - | chr7_4:37524076-37524095 | None:intergenic | 15.0% |
| !!! | CCAATTTTTAAGAATAAATT+AGG | + | chr7_4:37524073-37524092 | Msa1152230:intron | 15.0% |
| !!! | TTCTTTGTTTTTTGTGTTTA+AGG | + | chr7_4:37521296-37521315 | Msa1152230:intron | 20.0% |
| !!! | TTTGTTTTGTTTTGTGTTTA+AGG | + | chr7_4:37521401-37521420 | Msa1152230:intron | 20.0% |
| !! | TAACCATTAATCATAAAAAG+GGG | - | chr7_4:37521575-37521594 | None:intergenic | 20.0% |
| !! | TACTTTGATATTATGTGATA+TGG | + | chr7_4:37521596-37521615 | Msa1152230:intron | 20.0% |
| !! | TGATTATAGATACTTTATAG+CGG | + | chr7_4:37522141-37522160 | Msa1152230:intron | 20.0% |
| !! | ATACAATAGAAATACGAAAA+AGG | - | chr7_4:37522370-37522389 | None:intergenic | 20.0% |
| !!! | TTTTGATTCAAAAAATGTTC+TGG | + | chr7_4:37522389-37522408 | Msa1152230:intron | 20.0% |
| !! | AACTGTTACAAATCATTAAT+TGG | - | chr7_4:37522877-37522896 | None:intergenic | 20.0% |
| !!! | TAAGTCAGAAAACTTTAAAA+AGG | - | chr7_4:37523190-37523209 | None:intergenic | 20.0% |
| !! | TATGAATGCTTATAATAACA+AGG | + | chr7_4:37523740-37523759 | Msa1152230:CDS | 20.0% |
| !! | CTTGAAATATAATGTTTCAT+TGG | + | chr7_4:37524380-37524399 | Msa1152230:three_prime_UTR | 20.0% |
| ! | TTACCTTAAAAATGGATGAA+GGG | - | chr7_4:37521220-37521239 | None:intergenic | 25.0% |
| ! | AAAAAGGGTTACCTTAAAAA+TGG | - | chr7_4:37521228-37521247 | None:intergenic | 25.0% |
| !!! | AAGGTTTGTGGTTTTTTTTA+AGG | + | chr7_4:37521420-37521439 | Msa1152230:intron | 25.0% |
| !! | ATACCCCTTTTTATGATTAA+TGG | + | chr7_4:37521569-37521588 | Msa1152230:intron | 25.0% |
| ! | ATGTGATATGGAAAAATTGA+AGG | + | chr7_4:37521608-37521627 | Msa1152230:intron | 25.0% |
| ! | TGTGATATGGAAAAATTGAA+GGG | + | chr7_4:37521609-37521628 | Msa1152230:intron | 25.0% |
| !! | ATGAATTATGCTTGTTACTT+AGG | + | chr7_4:37521664-37521683 | Msa1152230:intron | 25.0% |
| !!! | TAAGCTTGTGAAATTGATTT+TGG | + | chr7_4:37521862-37521881 | Msa1152230:intron | 25.0% |
| !!! | ATTGATAGCACTTTTATACA+TGG | - | chr7_4:37522118-37522137 | None:intergenic | 25.0% |
| ! | CTAACTGTCCAAAAAAATAT+CGG | - | chr7_4:37522177-37522196 | None:intergenic | 25.0% |
| !! | TTAAAGAGGAAAAACTTTTG+CGG | - | chr7_4:37522209-37522228 | None:intergenic | 25.0% |
| ! | ATACACATTTATTACTCTCT+AGG | - | chr7_4:37522455-37522474 | None:intergenic | 25.0% |
| ! | AAATCCTCACTATAAAAGAA+TGG | - | chr7_4:37523217-37523236 | None:intergenic | 25.0% |
| ! | TAATTCGTGTCTGAAAAATT+TGG | + | chr7_4:37523336-37523355 | Msa1152230:intron | 25.0% |
| ! | GGATTTATTCTGTTGAATAA+TGG | + | chr7_4:37523611-37523630 | Msa1152230:intron | 25.0% |
| ! | ATAATAAAGTTAGGATCAGA+TGG | - | chr7_4:37523651-37523670 | None:intergenic | 25.0% |
| ! | AAACAACAAAACTAGAAACA+CGG | - | chr7_4:37523776-37523795 | None:intergenic | 25.0% |
| !!! | TTCTTAAAAATTGGCTTGTA+AGG | - | chr7_4:37524067-37524086 | None:intergenic | 25.0% |
| !!! | TCTAAATTTTTGGGAAGATA+AGG | - | chr7_4:37524142-37524161 | None:intergenic | 25.0% |
| !! | AACGTGTCATCTAAATTTTT+GGG | - | chr7_4:37524151-37524170 | None:intergenic | 25.0% |
| ! | TATGAAAACAAACCTTCATT+TGG | + | chr7_4:37524231-37524250 | Msa1152230:intron | 25.0% |
| ! | GAAATATAATGTTTCATTGG+TGG | + | chr7_4:37524383-37524402 | Msa1152230:three_prime_UTR | 25.0% |
| ! | GAATATTTATCTCTTATTGC+TGG | + | chr7_4:37524461-37524480 | Msa1152230:three_prime_UTR | 25.0% |
| GTTACCTTAAAAATGGATGA+AGG | - | chr7_4:37521221-37521240 | None:intergenic | 30.0% | |
| CAGAGGAAAAAAGAGAAAAA+GGG | - | chr7_4:37521243-37521262 | None:intergenic | 30.0% | |
| ATGATGTTTGATGAGTTATG+AGG | + | chr7_4:37521353-37521372 | Msa1152230:intron | 30.0% | |
| !! | TGTTTTGTGTTTAAGGTTTG+TGG | + | chr7_4:37521408-37521427 | Msa1152230:intron | 30.0% |
| TTGGTCAAATATCTGAATTG+AGG | + | chr7_4:37521509-37521528 | Msa1152230:intron | 30.0% | |
| !!! | TAGGTTTTAAATCACAGTCA+TGG | + | chr7_4:37521683-37521702 | Msa1152230:intron | 30.0% |
| TTTAAATCACAGTCATGGTT+TGG | + | chr7_4:37521688-37521707 | Msa1152230:intron | 30.0% | |
| !!! | TGATCACTGACTTTTTTTGT+TGG | + | chr7_4:37521812-37521831 | Msa1152230:intron | 30.0% |
| TTAAAAATCCTTTGCTTACG+CGG | - | chr7_4:37522515-37522534 | None:intergenic | 30.0% | |
| !! | AAATAAGAAAAAAGGTGCCT+CGG | - | chr7_4:37522564-37522583 | None:intergenic | 30.0% |
| !!! | TGTTTTAAAAATCCTTCCCT+TGG | - | chr7_4:37522714-37522733 | None:intergenic | 30.0% |
| !! | AATATGAAAAAAAGGTGCCT+TGG | - | chr7_4:37522759-37522778 | None:intergenic | 30.0% |
| ! | CTATTCATTCTATGCCTTTT+TGG | + | chr7_4:37522912-37522931 | Msa1152230:intron | 30.0% |
| ! | TCTGTTGTTTACAGAAAAGT+AGG | + | chr7_4:37523012-37523031 | Msa1152230:intron | 30.0% |
| ! | TCTTCCATTCTTTTATAGTG+AGG | + | chr7_4:37523210-37523229 | Msa1152230:intron | 30.0% |
| !! | ATTTGGTGTACTTTGATTGT+AGG | + | chr7_4:37523353-37523372 | Msa1152230:intron | 30.0% |
| ACACAGATATGTTAATACAG+TGG | - | chr7_4:37523565-37523584 | None:intergenic | 30.0% | |
| GACATCATTATACTGAAAAG+AGG | + | chr7_4:37523590-37523609 | Msa1152230:intron | 30.0% | |
| AACAACAAAACTAGAAACAC+GGG | - | chr7_4:37523775-37523794 | None:intergenic | 30.0% | |
| AATAATGAAGATGAAGCAAG+TGG | + | chr7_4:37523901-37523920 | Msa1152230:CDS | 30.0% | |
| ! | TTGTCCATCAAACTCTAAAA+GGG | + | chr7_4:37524032-37524051 | Msa1152230:intron | 30.0% |
| ! | GAACGTGTCATCTAAATTTT+TGG | - | chr7_4:37524152-37524171 | None:intergenic | 30.0% |
| ! | ACACATTTTATGCCAAATGA+AGG | - | chr7_4:37524246-37524265 | None:intergenic | 30.0% |
| ATATAATGTTTCATTGGTGG+AGG | + | chr7_4:37524386-37524405 | Msa1152230:three_prime_UTR | 30.0% | |
| TATAATGTTTCATTGGTGGA+GGG | + | chr7_4:37524387-37524406 | Msa1152230:three_prime_UTR | 30.0% | |
| !!! | TATTTTAGCCAACACATTTG+AGG | - | chr7_4:37524562-37524581 | None:intergenic | 30.0% |
| !! | TTTCATTTTGATCGATGCTT+TGG | + | chr7_4:37524591-37524610 | Msa1152230:three_prime_UTR | 30.0% |
| CAAACTACTCAAACTAAGTT+TGG | - | chr7_4:37524659-37524678 | None:intergenic | 30.0% | |
| GAATCAAAGAGACAAAGGTT+AGG | - | chr7_4:37521141-37521160 | None:intergenic | 35.0% | |
| GAAGAGAATCAAAGAGACAA+AGG | - | chr7_4:37521146-37521165 | None:intergenic | 35.0% | |
| !! | CAACCCTTCATCCATTTTTA+AGG | + | chr7_4:37521214-37521233 | Msa1152230:five_prime_UTR | 35.0% |
| GCAGAGGAAAAAAGAGAAAA+AGG | - | chr7_4:37521244-37521263 | None:intergenic | 35.0% | |
| CAAAAGAGATATTGAAGCAG+AGG | - | chr7_4:37521260-37521279 | None:intergenic | 35.0% | |
| GAGAAAAGATGCTGAATTGT+TGG | + | chr7_4:37521490-37521509 | Msa1152230:intron | 35.0% | |
| CCATAATACAACTGTCATTG+AGG | - | chr7_4:37521751-37521770 | None:intergenic | 35.0% | |
| CCTCAATGACAGTTGTATTA+TGG | + | chr7_4:37521748-37521767 | Msa1152230:intron | 35.0% | |
| CTCCAAGACGAAAAAAACTT+TGG | + | chr7_4:37521772-37521791 | Msa1152230:intron | 35.0% | |
| !!! | CACCAAAGTTTTTTTCGTCT+TGG | - | chr7_4:37521777-37521796 | None:intergenic | 35.0% |
| !!! | ACTTTTTTTGTTGGAAACCC+TGG | + | chr7_4:37521821-37521840 | Msa1152230:intron | 35.0% |
| !! | GCTTGTGAAATTGATTTTGG+TGG | + | chr7_4:37521865-37521884 | Msa1152230:intron | 35.0% |
| ! | TTTTCAACTGTAGATCGTCT+TGG | + | chr7_4:37521901-37521920 | Msa1152230:intron | 35.0% |
| !!! | TTTTGAAACCAGTTGATGAC+CGG | + | chr7_4:37521980-37521999 | Msa1152230:CDS | 35.0% |
| TTGTATGTCATTGTCCGTAA+AGG | + | chr7_4:37522074-37522093 | Msa1152230:intron | 35.0% | |
| GTAAATCACCAACACCTTTA+CGG | - | chr7_4:37522091-37522110 | None:intergenic | 35.0% | |
| !!! | GCAAAGGCTTTTAAAACATG+AGG | + | chr7_4:37522319-37522338 | Msa1152230:intron | 35.0% |
| TAAAACATGAGGTTGTGAGT+TGG | + | chr7_4:37522330-37522349 | Msa1152230:intron | 35.0% | |
| ATTTATTACTCTCTAGGCGA+AGG | - | chr7_4:37522637-37522656 | None:intergenic | 35.0% | |
| !!! | GGAAGGATTTTTAAAACACG+AGG | + | chr7_4:37522716-37522735 | Msa1152230:intron | 35.0% |
| TTGCTCGAATATTACTCTCT+AGG | - | chr7_4:37522840-37522859 | None:intergenic | 35.0% | |
| CAAATCATTAATTGGTGCAG+TGG | - | chr7_4:37522869-37522888 | None:intergenic | 35.0% | |
| !! | ACTTTTTAGCAGTGCCAAAA+AGG | - | chr7_4:37522929-37522948 | None:intergenic | 35.0% |
| CAGAAAAGTAGGAAAGAGAA+AGG | + | chr7_4:37523023-37523042 | Msa1152230:intron | 35.0% | |
| ! | TTCTTCTCCTTCTTAGTCTT+TGG | - | chr7_4:37523072-37523091 | None:intergenic | 35.0% |
| AAAGACTAAGAAGGAGAAGA+AGG | + | chr7_4:37523071-37523090 | Msa1152230:CDS | 35.0% | |
| AAGATCCCAACAAACCAAAA+AGG | + | chr7_4:37523100-37523119 | Msa1152230:CDS | 35.0% | |
| GGATTTCAGAAAGACTTTCA+AGG | + | chr7_4:37523231-37523250 | Msa1152230:CDS | 35.0% | |
| CATGTAACTTACAGCTGATA+CGG | - | chr7_4:37523278-37523297 | None:intergenic | 35.0% | |
| AGATACATCACGATACACAA+CGG | - | chr7_4:37523311-37523330 | None:intergenic | 35.0% | |
| ! | ACTTTGATTGTAGGTTGGAA+AGG | + | chr7_4:37523362-37523381 | Msa1152230:intron | 35.0% |
| GAAATGGAAATCCTTGACTA+AGG | + | chr7_4:37523395-37523414 | Msa1152230:CDS | 35.0% | |
| GTTGTCCATCAAACTCTAAA+AGG | + | chr7_4:37524031-37524050 | Msa1152230:intron | 35.0% | |
| GCTCAATTCAAAACCTAAGA+CGG | + | chr7_4:37524095-37524114 | Msa1152230:intron | 35.0% | |
| TATGAAGAATGAACCGTCTT+AGG | - | chr7_4:37524111-37524130 | None:intergenic | 35.0% | |
| TGACACGTTCCAAAGTTTAA+AGG | + | chr7_4:37524162-37524181 | Msa1152230:intron | 35.0% | |
| GACACGTTCCAAAGTTTAAA+GGG | + | chr7_4:37524163-37524182 | Msa1152230:intron | 35.0% | |
| ACACGTTCCAAAGTTTAAAG+GGG | + | chr7_4:37524164-37524183 | Msa1152230:intron | 35.0% | |
| TTGTATGCCCCTTTAAACTT+TGG | - | chr7_4:37524174-37524193 | None:intergenic | 35.0% | |
| !! | TTTTCTAGTAGAGCAACTCT+TGG | + | chr7_4:37524423-37524442 | Msa1152230:three_prime_UTR | 35.0% |
| GTACAATAACCAACAACTGA+GGG | - | chr7_4:37524515-37524534 | None:intergenic | 35.0% | |
| AGTACAATAACCAACAACTG+AGG | - | chr7_4:37524516-37524535 | None:intergenic | 35.0% | |
| ! | TTCTCTTCTTGCTGTGTCTT+CGG | + | chr7_4:37521158-37521177 | Msa1152230:five_prime_UTR | 40.0% |
| TAGAACGAAGACGATGACAA+AGG | + | chr7_4:37521927-37521946 | Msa1152230:exon | 40.0% | |
| AGAACGAAGACGATGACAAA+GGG | + | chr7_4:37521928-37521947 | Msa1152230:exon | 40.0% | |
| GCGATGATACAGAAACTAAC+CGG | - | chr7_4:37522002-37522021 | None:intergenic | 40.0% | |
| ! | TACTTTATAGCGGAAGTCAG+AGG | + | chr7_4:37522151-37522170 | Msa1152230:intron | 40.0% |
| !!! | GTCAGAGGCCGATATTTTTT+TGG | + | chr7_4:37522166-37522185 | Msa1152230:intron | 40.0% |
| !!! | TTTTTTTGGACAGTTAGCCG+TGG | + | chr7_4:37522180-37522199 | Msa1152230:intron | 40.0% |
| ! | AAAAACTTTTGCGGTAGCCA+CGG | - | chr7_4:37522200-37522219 | None:intergenic | 40.0% |
| !! | GAAATACGAAAAAGGTGCCA+CGG | - | chr7_4:37522362-37522381 | None:intergenic | 40.0% |
| !! | ATGAAAAAAAGGTGCCTTGG+CGG | - | chr7_4:37522756-37522775 | None:intergenic | 40.0% |
| AATATTACTCTCTAGGCGAG+GGG | - | chr7_4:37522833-37522852 | None:intergenic | 40.0% | |
| GAATATTACTCTCTAGGCGA+GGG | - | chr7_4:37522834-37522853 | None:intergenic | 40.0% | |
| !! | TGGTTTGTTGGGATCTTTCT+TGG | - | chr7_4:37523097-37523116 | None:intergenic | 40.0% |
| TGACAGACAGAGATACTAAC+AGG | - | chr7_4:37523149-37523168 | None:intergenic | 40.0% | |
| GGTGTACTTTGATTGTAGGT+TGG | + | chr7_4:37523357-37523376 | Msa1152230:intron | 40.0% | |
| ATTGCTTACAGCCTTAGTCA+AGG | - | chr7_4:37523409-37523428 | None:intergenic | 40.0% | |
| AAAAGCTCCATATGAAGCCA+AGG | + | chr7_4:37523686-37523705 | Msa1152230:CDS | 40.0% | |
| ! | AACTTTCCTTTTTGCAGCCT+TGG | - | chr7_4:37523706-37523725 | None:intergenic | 40.0% |
| ACAACTATAACACCGTTGTG+GGG | - | chr7_4:37524016-37524035 | None:intergenic | 40.0% | |
| GACAACTATAACACCGTTGT+GGG | - | chr7_4:37524017-37524036 | None:intergenic | 40.0% | |
| !!! | GGTACCCTTTTAGAGTTTGA+TGG | - | chr7_4:37524039-37524058 | None:intergenic | 40.0% |
| !! | AAATTGGCTTGTAAGGTGAG+CGG | - | chr7_4:37524060-37524079 | None:intergenic | 40.0% |
| ! | ATTTGAGGCACAATGCACAA+AGG | - | chr7_4:37524547-37524566 | None:intergenic | 40.0% |
| TTGGTGCATACATAGTGTGT+AGG | - | chr7_4:37524640-37524659 | None:intergenic | 40.0% | |
| ATGGATGAAGGGTTGAAGAG+AGG | - | chr7_4:37521209-37521228 | None:intergenic | 45.0% | |
| ! | GTGTTTTGTAGTCACAGCCA+GGG | - | chr7_4:37521841-37521860 | None:intergenic | 45.0% |
| ! | AGTGTTTTGTAGTCACAGCC+AGG | - | chr7_4:37521842-37521861 | None:intergenic | 45.0% |
| AAGACGATGACAAAGGGCAA+GGG | + | chr7_4:37521934-37521953 | Msa1152230:exon | 45.0% | |
| AGGGAACAGCAAAGACTTCA+AGG | + | chr7_4:37521953-37521972 | Msa1152230:CDS | 45.0% | |
| GGGAACAGCAAAGACTTCAA+GGG | + | chr7_4:37521954-37521973 | Msa1152230:CDS | 45.0% | |
| GAAACTAACCGGTCATCAAC+TGG | - | chr7_4:37521991-37522010 | None:intergenic | 45.0% | |
| ! | GTCATTGTCCGTAAAGGTGT+TGG | + | chr7_4:37522080-37522099 | Msa1152230:intron | 45.0% |
| TCTGGTCAAGATCTGAAGAC+TGG | + | chr7_4:37522407-37522426 | Msa1152230:intron | 45.0% | |
| TTGTTAAGCCGCGTAAGCAA+AGG | + | chr7_4:37522504-37522523 | Msa1152230:intron | 45.0% | |
| !! | TAAGAAAAAAGGTGCCTCGG+CGG | - | chr7_4:37522561-37522580 | None:intergenic | 45.0% |
| CGAATATTACTCTCTAGGCG+AGG | - | chr7_4:37522835-37522854 | None:intergenic | 45.0% | |
| ! | TTAGTCTTTGGCACCTTCTC+AGG | - | chr7_4:37523060-37523079 | None:intergenic | 45.0% |
| !! | GAAGGTGCCAAAGACTAAGA+AGG | + | chr7_4:37523062-37523081 | Msa1152230:CDS | 45.0% |
| !!! | GGAGGCCTTTTTGGTTTGTT+GGG | - | chr7_4:37523108-37523127 | None:intergenic | 45.0% |
| CTGATACGGCCTTCACATTA+GGG | - | chr7_4:37523264-37523283 | None:intergenic | 45.0% | |
| ! | TGATTGTAGGTTGGAAAGGC+TGG | + | chr7_4:37523366-37523385 | Msa1152230:intron | 45.0% |
| TTTGCAGCCTTGGCTTCATA+TGG | - | chr7_4:37523696-37523715 | None:intergenic | 45.0% | |
| ATGAAGCCAAGGCTGCAAAA+AGG | + | chr7_4:37523697-37523716 | Msa1152230:CDS | 45.0% | |
| ATGTTGACAGCCAAGTTCAG+CGG | + | chr7_4:37523837-37523856 | Msa1152230:intron | 45.0% | |
| TGATGAGGAGGAATCAGACA+AGG | + | chr7_4:37523864-37523883 | Msa1152230:CDS | 45.0% | |
| TGAAGATGAAGCAAGTGGAG+AGG | + | chr7_4:37523906-37523925 | Msa1152230:CDS | 45.0% | |
| TAACGATTGCTACCCCACAA+CGG | + | chr7_4:37524001-37524020 | Msa1152230:intron | 45.0% | |
| GGACAACTATAACACCGTTG+TGG | - | chr7_4:37524018-37524037 | None:intergenic | 45.0% | |
| ! | ACCATCTCTCCTTGTTGTAC+AGG | + | chr7_4:37524271-37524290 | Msa1152230:intron | 45.0% |
| TCCTGTACAACAAGGAGAGA+TGG | - | chr7_4:37524275-37524294 | None:intergenic | 45.0% | |
| AATGTTTCATTGGTGGAGGG+AGG | + | chr7_4:37524390-37524409 | Msa1152230:three_prime_UTR | 45.0% | |
| ACAACTGAGGGAAGTTCAAG+TGG | - | chr7_4:37524503-37524522 | None:intergenic | 45.0% | |
| CTTGAACTTCCCTCAGTTGT+TGG | + | chr7_4:37524503-37524522 | Msa1152230:three_prime_UTR | 45.0% | |
| GCATTGTGCCTCAAATGTGT+TGG | + | chr7_4:37524551-37524570 | Msa1152230:three_prime_UTR | 45.0% | |
| GAAGACGATGACAAAGGGCA+AGG | + | chr7_4:37521933-37521952 | Msa1152230:exon | 50.0% | |
| !! | ATACGAAAAAGGTGCCACGG+TGG | - | chr7_4:37522359-37522378 | None:intergenic | 50.0% |
| AGTTATTCAAGCTCCGCCAC+CGG | + | chr7_4:37522946-37522965 | Msa1152230:intron | 50.0% | |
| CACCGGTGGAAGTCGTATTA+CGG | + | chr7_4:37522963-37522982 | Msa1152230:intron | 50.0% | |
| ACCGGTGGAAGTCGTATTAC+GGG | + | chr7_4:37522964-37522983 | Msa1152230:intron | 50.0% | |
| TCCCGTAATACGACTTCCAC+CGG | - | chr7_4:37522968-37522987 | None:intergenic | 50.0% | |
| !!! | GGGAGGCCTTTTTGGTTTGT+TGG | - | chr7_4:37523109-37523128 | None:intergenic | 50.0% |
| !! | AGGAAGACGAAGAAAGCGCT+GGG | - | chr7_4:37523129-37523148 | None:intergenic | 50.0% |
| GGCAGAGAACCCTAATGTGA+AGG | + | chr7_4:37523252-37523271 | Msa1152230:CDS | 50.0% | |
| GCTGATACGGCCTTCACATT+AGG | - | chr7_4:37523265-37523284 | None:intergenic | 50.0% | |
| ! | TTGTAGGTTGGAAAGGCTGG+AGG | + | chr7_4:37523369-37523388 | Msa1152230:intron | 50.0% |
| GAAAGGCTGGAGGAGAGAAA+TGG | + | chr7_4:37523379-37523398 | Msa1152230:CDS | 50.0% | |
| TCATCATCGTCCGCTGAACT+TGG | - | chr7_4:37523850-37523869 | None:intergenic | 50.0% | |
| AAGTTCAGCGGACGATGATG+AGG | + | chr7_4:37523849-37523868 | Msa1152230:CDS | 50.0% | |
| GGTGGTCATCCTGTACAACA+AGG | - | chr7_4:37524283-37524302 | None:intergenic | 50.0% | |
| GGATGACCACCAAGATGATG+AGG | + | chr7_4:37524292-37524311 | Msa1152230:intron | 50.0% | |
| CCTCTTCCTCATCATCTTGG+TGG | - | chr7_4:37524301-37524320 | None:intergenic | 50.0% | |
| CCACCAAGATGATGAGGAAG+AGG | + | chr7_4:37524298-37524317 | Msa1152230:CDS | 50.0% | |
| CGTCCTCTTCCTCATCATCT+TGG | - | chr7_4:37524304-37524323 | None:intergenic | 50.0% | |
| AGCCACGTAGCGACAAGCAA+AGG | + | chr7_4:37522303-37522322 | Msa1152230:intron | 55.0% | |
| AGCCTTTGCTTGTCGCTACG+TGG | - | chr7_4:37522308-37522327 | None:intergenic | 55.0% | |
| ! | TTGTGAGTTGGAGTCCACCG+TGG | + | chr7_4:37522342-37522361 | Msa1152230:intron | 55.0% |
| TGTTAAGCCGCGTAGTGCCA+AGG | + | chr7_4:37522694-37522713 | Msa1152230:intron | 55.0% | |
| GTTAAGCCGCGTAGTGCCAA+GGG | + | chr7_4:37522695-37522714 | Msa1152230:intron | 55.0% | |
| ATCCTTCCCTTGGCACTACG+CGG | - | chr7_4:37522704-37522723 | None:intergenic | 55.0% | |
| TTGTGAGTTCGAGTCCGCCA+AGG | + | chr7_4:37522739-37522758 | Msa1152230:intron | 55.0% | |
| AATACGACTTCCACCGGTGG+CGG | - | chr7_4:37522962-37522981 | None:intergenic | 55.0% | |
| CGTAATACGACTTCCACCGG+TGG | - | chr7_4:37522965-37522984 | None:intergenic | 55.0% | |
| GGCTGCTGCTAAACCTGAGA+AGG | + | chr7_4:37523044-37523063 | Msa1152230:CDS | 55.0% | |
| !!! | AAAGCGCTGGGAGGCCTTTT+TGG | - | chr7_4:37523117-37523136 | None:intergenic | 55.0% |
| !! | AAGACGAAGAAAGCGCTGGG+AGG | - | chr7_4:37523126-37523145 | None:intergenic | 55.0% |
| ! | CAGGAAGACGAAGAAAGCGC+TGG | - | chr7_4:37523130-37523149 | None:intergenic | 55.0% |
| TTCAGCGGACGATGATGAGG+AGG | + | chr7_4:37523852-37523871 | Msa1152230:CDS | 55.0% | |
| TGATGAGGAAGAGGACGACG+AGG | + | chr7_4:37524307-37524326 | Msa1152230:CDS | 55.0% | |
| CTGAGGGAAGTTCAAGTGGC+TGG | - | chr7_4:37524499-37524518 | None:intergenic | 55.0% | |
| TTGTGAGTTCGAGTCCGCCG+AGG | + | chr7_4:37522544-37522563 | Msa1152230:intron | 60.0% | |
| TATTCAAGCTCCGCCACCGG+TGG | + | chr7_4:37522949-37522968 | Msa1152230:intron | 60.0% | |
| AGCCGCGTAGTGCCAAGGGA+AGG | + | chr7_4:37522699-37522718 | Msa1152230:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 37521132 | 37524688 | 37521132 | ID=Msa1152230;Name=Msa1152230 |
| chr7_4 | mRNA | 37521132 | 37524688 | 37521132 | ID=Msa1152230-mRNA-1;Parent=Msa1152230;Name=Msa1152230-mRNA-1;_AED=0.08;_eAED=0.08;_QI=130|1|1|1|0.85|0.87|8|324|172 |
| chr7_4 | exon | 37521132 | 37521235 | 37521132 | ID=Msa1152230-mRNA-1:exon:8881;Parent=Msa1152230-mRNA-1 |
| chr7_4 | exon | 37521914 | 37522001 | 37521914 | ID=Msa1152230-mRNA-1:exon:8882;Parent=Msa1152230-mRNA-1 |
| chr7_4 | exon | 37523026 | 37523148 | 37523026 | ID=Msa1152230-mRNA-1:exon:8883;Parent=Msa1152230-mRNA-1 |
| chr7_4 | exon | 37523228 | 37523285 | 37523228 | ID=Msa1152230-mRNA-1:exon:8884;Parent=Msa1152230-mRNA-1 |
| chr7_4 | exon | 37523375 | 37523419 | 37523375 | ID=Msa1152230-mRNA-1:exon:8885;Parent=Msa1152230-mRNA-1 |
| chr7_4 | exon | 37523684 | 37523761 | 37523684 | ID=Msa1152230-mRNA-1:exon:8886;Parent=Msa1152230-mRNA-1 |
| chr7_4 | exon | 37523847 | 37523927 | 37523847 | ID=Msa1152230-mRNA-1:exon:8887;Parent=Msa1152230-mRNA-1 |
| chr7_4 | exon | 37524293 | 37524688 | 37524293 | ID=Msa1152230-mRNA-1:exon:8888;Parent=Msa1152230-mRNA-1 |
| chr7_4 | five_prime_UTR | 37521132 | 37521235 | 37521132 | ID=Msa1152230-mRNA-1:five_prime_utr;Parent=Msa1152230-mRNA-1 |
| chr7_4 | five_prime_UTR | 37521914 | 37521939 | 37521914 | ID=Msa1152230-mRNA-1:five_prime_utr;Parent=Msa1152230-mRNA-1 |
| chr7_4 | CDS | 37521940 | 37522001 | 37521940 | ID=Msa1152230-mRNA-1:cds;Parent=Msa1152230-mRNA-1 |
| chr7_4 | CDS | 37523026 | 37523148 | 37523026 | ID=Msa1152230-mRNA-1:cds;Parent=Msa1152230-mRNA-1 |
| chr7_4 | CDS | 37523228 | 37523285 | 37523228 | ID=Msa1152230-mRNA-1:cds;Parent=Msa1152230-mRNA-1 |
| chr7_4 | CDS | 37523375 | 37523419 | 37523375 | ID=Msa1152230-mRNA-1:cds;Parent=Msa1152230-mRNA-1 |
| chr7_4 | CDS | 37523684 | 37523761 | 37523684 | ID=Msa1152230-mRNA-1:cds;Parent=Msa1152230-mRNA-1 |
| chr7_4 | CDS | 37523847 | 37523927 | 37523847 | ID=Msa1152230-mRNA-1:cds;Parent=Msa1152230-mRNA-1 |
| chr7_4 | CDS | 37524293 | 37524364 | 37524293 | ID=Msa1152230-mRNA-1:cds;Parent=Msa1152230-mRNA-1 |
| chr7_4 | three_prime_UTR | 37524365 | 37524688 | 37524365 | ID=Msa1152230-mRNA-1:three_prime_utr;Parent=Msa1152230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
